Autism Spectrum Disorder Methylation analysis - blood analysis
Namitha Mohandras, Mark Ziemann
2023-01-19
Source: https://github.com/markziemann/asd_meth
Introduction
Here we are analysing blood methylation in 9 twin pairs.
baseDir=getwd()
dataDir=paste(baseDir,"/ASD_EPIC_DATA",sep="")
suppressPackageStartupMessages({
library("missMethyl")
library("limma")
library("minfi")
library("IlluminaHumanMethylation450kanno.ilmn12.hg19")
library("IlluminaHumanMethylationEPICanno.ilm10b2.hg19")
library("ruv")
library("RColorBrewer")
library("matrixStats")
library("gplots")
library("WGCNA")
library("FlowSorted.Blood.450k")
library("reshape2")
library("ggplot2")
library("missMethyl")
library("DMRcate")
library("FlowSorted.Blood.EPIC")
library("mitch")
library("kableExtra")
})Load data
Load the annotation data and the Epic methylation data.
This analysis is to be conducted on Ubuntu with R4.
ann = getAnnotation(IlluminaHumanMethylationEPICanno.ilm10b2.hg19)
targets_gen = read.metharray.sheet(dataDir, pattern = "ASD_blood_summarysheet.csv")## [read.metharray.sheet] Found the following CSV files:## [1] "/home/mdz/projects/asd_meth/ASD_EPIC_DATA/ASD_blood_summarysheet.csv"#targets$ID = paste(targets$Sample_Group,targets_gen$Sample_Name,sep=".")
rgSet = read.metharray.exp(targets = targets_gen)
sampleNames(rgSet) = targets_gen$SampleIDTesting MZ status
snpBetas = getSnpBeta(rgSet)## Loading required package: IlluminaHumanMethylationEPICmanifestd = dist(t(snpBetas))
hr = hclust(d, method = "complete", members=NULL)
plot(hr)
Quality control
detP = detectionP(rgSet)
qcReport(rgSet, sampNames = targets_gen$Sample_Name,
pdf="qc-report_ASD_blood_nov27.pdf")## Warning in type.convert.default(X[[i]], ...): 'as.is' should be specified by the
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## 2cols=brewer.pal(4,"Set1")
barplot(apply(detP,2,mean),
col=as.numeric(factor(targets_gen$Sample_Name)),
las=2,cex.names= 0.8, cex.axis=0.75,
main="Mean detection p-values of probe signals",
ylab="Mean detection p-value")
barplot(apply(detP,2,mean),
col=as.numeric(factor(targets_gen$Sample_Name)),
las=2,cex.names= 0.8, cex.axis=0.75,ylim=c(0,0.010),
main="Mean detection p-values of probe signals",
ylab="Mean detection p-value")
Preprocessing
mset.raw = preprocessRaw(rgSet)Data exploration
Using Multi-dimensional scaling (MDS) plots before filtering.
mdsPlot(mset.raw, sampGroups = targets_gen$Sample_Name,
sampNames=targets_gen$Social_interaction_on_ADOS,legendPos="bottom")
mdsPlot(mset.raw, sampGroups = targets_gen$Sex,
sampNames=targets_gen$SampleID,legendPos="bottom")
Normalisation
SQN is used as it gave a more stable result.
#SQN method
mSetSq = preprocessQuantile(rgSet)## [preprocessQuantile] Mapping to genome.## [preprocessQuantile] Fixing outliers.## [preprocessQuantile] Quantile normalizing.densityPlot(rgSet, sampGroups = targets_gen$Social_interaction_on_ADOS,
main="Raw", legend = FALSE)
densityPlot(getBeta(mSetSq),
sampGroups = targets_gen$Social_interaction_on_ADOS,main="SQN",
legend = FALSE)
Cell type composition analysis
Need to consider using estimatecellcounts2.
rgSet$Slide <- as.numeric(rgSet$Slide)
rgSet$Sex<- as.character(rgSet$Sex)
rgSet$Sample_Name<- as.character(rgSet$Sample_Name)
cellCounts_new <- estimateCellCounts(rgSet, compositeCellType = "Blood",
processMethod = "auto", probeSelect = "auto",
cellTypes = c("CD8T","CD4T", "NK","Bcell","Mono","Gran"),
referencePlatform = c("IlluminaHumanMethylation450k"),
returnAll = FALSE, meanPlot = TRUE)## Loading required package: IlluminaHumanMethylation450kmanifest## [estimateCellCounts] Combining user data with reference (flow sorted) data.## Warning in DataFrame(sampleNames = c(colnames(rgSet),
## colnames(referenceRGset)), : 'stringsAsFactors' is ignored## [estimateCellCounts] Processing user and reference data together.## [preprocessQuantile] Mapping to genome.## [preprocessQuantile] Fixing outliers.## [preprocessQuantile] Quantile normalizing.## [estimateCellCounts] Picking probes for composition estimation.## [estimateCellCounts] Estimating composition.
#plot cell type composition by sample group
a = cellCounts_new[targets_gen$Diagnosis == "0",]
b = cellCounts_new[targets_gen$Diagnosis == "1",]
c = cellCounts_new[targets_gen$Diagnosis == "2",]
age.pal <- brewer.pal(8,"Set1")
cellCounts_long <- melt(cellCounts_new, id = "celltype")
cellCounts_long$Var1 <- targets_gen[match(cellCounts_long$Var1,
targets_gen$SampleID),"Diagnosis"]
colnames(cellCounts_long) <- c("diagnosis","celltype","value")
ggplot(cellCounts_long, aes(x = factor(celltype), y = value, fill = factor(diagnosis))) +
geom_boxplot() 
wx <- lapply(1:ncol(cellCounts_new) , function(i) {
wilcox.test(a[,i],c[,i], paired=FALSE)
} )## Warning in wilcox.test.default(a[, i], c[, i], paired = FALSE): cannot compute
## exact p-value with tiesnames(wx) <- colnames(cellCounts_new)
wx## $CD8T
##
## Wilcoxon rank sum exact test
##
## data: a[, i] and c[, i]
## W = 12, p-value = 0.6923
## alternative hypothesis: true location shift is not equal to 0
##
##
## $CD4T
##
## Wilcoxon rank sum exact test
##
## data: a[, i] and c[, i]
## W = 13, p-value = 0.8112
## alternative hypothesis: true location shift is not equal to 0
##
##
## $NK
##
## Wilcoxon rank sum test with continuity correction
##
## data: a[, i] and c[, i]
## W = 16, p-value = 0.9317
## alternative hypothesis: true location shift is not equal to 0
##
##
## $Bcell
##
## Wilcoxon rank sum exact test
##
## data: a[, i] and c[, i]
## W = 18, p-value = 0.6923
## alternative hypothesis: true location shift is not equal to 0
##
##
## $Mono
##
## Wilcoxon rank sum exact test
##
## data: a[, i] and c[, i]
## W = 23, p-value = 0.2168
## alternative hypothesis: true location shift is not equal to 0
##
##
## $Gran
##
## Wilcoxon rank sum exact test
##
## data: a[, i] and c[, i]
## W = 15, p-value = 1
## alternative hypothesis: true location shift is not equal to 0Try estimatecellcounts2.
cells <- estimateCellCounts2(rgSet, referencePlatform= "IlluminaHumanMethylationEPIC",
returnAll = TRUE)## snapshotDate(): 2022-10-31
## snapshotDate(): 2022-10-31## see ?FlowSorted.Blood.EPIC and browseVignettes('FlowSorted.Blood.EPIC') for documentation## loading from cache## [estimateCellCounts2] Combining user data with reference (flow sorted) data.## Warning in asMethod(object): NAs introduced by coercion## [estimateCellCounts2] Processing user and reference data together.## [estimateCellCounts2] Using IDOL L-DMR probes for composition estimation.## [estimateCellCounts2] Estimating proportion composition (prop), if you provide cellcounts those will be provided as counts in the composition estimation.mset <- cells$normalizedData
cellCounts_new <- cells[[1]]
#plot cell type composition by sample group
a = cellCounts_new[targets_gen$Diagnosis == "0",]
b = cellCounts_new[targets_gen$Diagnosis == "1",]
c = cellCounts_new[targets_gen$Diagnosis == "2",]
age.pal <- brewer.pal(8,"Set1")
cellCounts_long <- melt(cellCounts_new, id = "celltype")
cellCounts_long$Var1 <- targets_gen[match(cellCounts_long$Var1, targets_gen$SampleID),"Diagnosis"]
colnames(cellCounts_long) <- c("diagnosis","celltype","value")
ggplot(cellCounts_long, aes(x = factor(celltype), y = value, fill = factor(diagnosis))) +
geom_boxplot()
pdf("cells_blood.pdf")
par(mar=c(3,8,2,2))
ggplot(cellCounts_long, aes(x = factor(celltype), y = value, fill = factor(diagnosis))) +
geom_boxplot()
dev.off()## png
## 2wx <- lapply(1:ncol(cellCounts_new) , function(i) {
wilcox.test(a[,i],c[,i], paired=FALSE)
} )
names(wx) <- colnames(cellCounts_new)
wx## $CD8T
##
## Wilcoxon rank sum exact test
##
## data: a[, i] and c[, i]
## W = 14, p-value = 0.9371
## alternative hypothesis: true location shift is not equal to 0
##
##
## $CD4T
##
## Wilcoxon rank sum exact test
##
## data: a[, i] and c[, i]
## W = 13, p-value = 0.8112
## alternative hypothesis: true location shift is not equal to 0
##
##
## $NK
##
## Wilcoxon rank sum exact test
##
## data: a[, i] and c[, i]
## W = 17, p-value = 0.8112
## alternative hypothesis: true location shift is not equal to 0
##
##
## $Bcell
##
## Wilcoxon rank sum exact test
##
## data: a[, i] and c[, i]
## W = 18, p-value = 0.6923
## alternative hypothesis: true location shift is not equal to 0
##
##
## $Mono
##
## Wilcoxon rank sum exact test
##
## data: a[, i] and c[, i]
## W = 26, p-value = 0.07692
## alternative hypothesis: true location shift is not equal to 0
##
##
## $Neu
##
## Wilcoxon rank sum exact test
##
## data: a[, i] and c[, i]
## W = 14, p-value = 0.9371
## alternative hypothesis: true location shift is not equal to 0#densityByProbeType(mSetSq, main = "Raw")
#densityByProbeType(mset[,1], main = "estimateCellCounts2")
#mset_reduced <- mset[which(rownames(mset) %in% names(keep[keep==TRUE])),]
#meth <- getMeth(mset_reduced)
#unmeth <- getUnmeth(mset_reduced)
#Mval <- log2((meth + 100)/(unmeth + 100))
#beta <- getBeta(mset_reduced)
#dim(Mval)Filtering
None of the p-values are less than 0.05.
Now filter for high detection p-value and overlap with SNP.
Need to get a copy of the Xreact probes from Namitha. In the mean time I have downloaded from github - link below.
detP <- detectionP(rgSet)
keep <- rowSums(detP < 0.01) == ncol(rgSet)
mset <- mset[keep,]
gmset <- mapToGenome(mset)
#remove SNPs
gmset_flt = dropLociWithSnps(gmset, snps = c("CpG", "SBE"))
#Removing cross-reactive probes
XURL="https://raw.githubusercontent.com/sirselim/illumina450k_filtering/master/EPIC/13059_2016_1066_MOESM1_ESM.csv"
Xreact <- read.csv(XURL)
#Xreact = read.csv(file="/group/canc2/puumba/Data/InfiniumData/NamithaData/Rprojects/Autism/Analysis_Sept11/EPIC_850k_crossreactiveProbes.csv", stringsAsFactors=FALSE)
#Xreact = read.csv(file="~/48639-non-specific-probes-Illumina450k.csv", stringsAsFactors=FALSE)
noXreact <- !(featureNames(gmset) %in% Xreact$X)
gmset <- gmset[noXreact,]
#Removing probes on X and Y chromosomes
autosomes <- !(featureNames(gmset) %in% ann$Name[ann$chr %in% c("chrX","chrY")])
gmset_flt <- gmset[autosomes,]
#Relative log expression (RLE plot)
mvals = getM(gmset_flt)
medSq = apply(mvals, 1, median)
YSq = mvals - medSq
boxplot(YSq,outline=FALSE,ylim=c(-1.5,1.5),
ylab="Relative Log Methylation Value",
cols=as.character(factor(targets_gen$Social_interaction_on_ADOS,)) )
MDS plots generation after filtering
pal = brewer.pal(8, "Dark2")
mds1Sq = plotMDS(mvals, top=1000, gene.selection="common",dim.plot=c(1,2))
mds2Sq = plotMDS(mvals, top=1000, gene.selection="common",dim.plot=c(1,3))
mds3Sq = plotMDS(mvals, top=1000, gene.selection="common",dim.plot=c(2,3))
mds4Sq = plotMDS(mvals, top=1000, gene.selection="common",dim.plot=c(3,4))
plotMDS(mds1Sq, xlab="Dimension 1", ylab="Dimension 2",
col=pal[as.factor(targets_gen$Diagnosis)],
dim=c(1,2), labels=targets_gen$Sample_Name)
legend("bottomright",bg="white",col=pal,cex=.7,pch=1,legend=0:1)
plotMDS(mds2Sq, xlab="Dimension 1", ylab="Dimension 3",
col=pal[as.factor(targets_gen$Diagnosis)],dim=c(1,3),
labels=targets_gen$Sample_Name)
legend("bottomright",bg="white",col=pal,cex=.7,pch=1,legend=0:1)
plotMDS(mds3Sq, xlab="Dimension 2", ylab="Dimension 3",
col=pal[as.factor(targets_gen$Diagnosis)],dim=c(2,3),
labels=targets_gen$Sample_Name)
legend("bottomright",bg="white",col=pal,cex=.7,pch=1,legend=0:1)
plotMDS(mds4Sq, xlab="Dimension 3", ylab="Dimension 4",
col=pal[as.factor(targets_gen$Diagnosis)],dim=c(3,4),
labels=targets_gen$Sample_Name)
legend("bottomright",bg="white",col=pal,cex=.7,pch=1,legend=0:1)
Principal Component Analysis (PCA)
fit <- prcomp(t(mvals),center = TRUE, scale = TRUE,retx=TRUE)
loadings = fit$x
plot(fit,type="lines")
nGenes = nrow(mvals)
nSamples = ncol(mvals)
datTraits = targets_gen[,7:15]
moduleTraitCor = cor(loadings[,1:6], datTraits, use = "p")
moduleTraitPvalue = corPvalueStudent(moduleTraitCor, nSamples)
par(cex=0.75, mar = c(6, 8.5, 3, 3))
textMatrix = paste(signif(moduleTraitCor, 2), "\n(",
signif(moduleTraitPvalue, 1), ")", sep = "");
dim(textMatrix) = dim(moduleTraitCor)
labeledHeatmap(Matrix = t(moduleTraitCor),
xLabels = colnames(loadings)[1:ncol(t(moduleTraitCor))],
yLabels = names(datTraits), colorLabels = FALSE, colors = blueWhiteRed(6),
textMatrix = t(textMatrix), setStdMargins = FALSE, cex.text = 0.5,
cex.lab.y = 0.6, zlim = c(-1,1),
main = paste("PCA-trait relationships: Top principal components"))
pdf("pca_blood.pdf")
par(mar=c(3,8,2,2))
labeledHeatmap(Matrix = t(moduleTraitCor),
xLabels = colnames(loadings)[1:ncol(t(moduleTraitCor))],
yLabels = names(datTraits), colorLabels = FALSE, colors = blueWhiteRed(6),
textMatrix = t(textMatrix), setStdMargins = FALSE, cex.text = 0.5,
cex.lab.y = 0.6, zlim = c(-1,1),
main = paste("PCA-trait relationships: Top principal components"))
dev.off()## png
## 2Regression analysis - within twin pair on ADOS
ADOS is the outcome variable (continuous)
mDat = mvals
Twin_Group <- factor(targets_gen$Family_ID)
ADOS <- targets_gen$Social_interaction_on_ADOS
names(ADOS) <- targets_gen$SampleID
design_tw <- model.matrix(~ Twin_Group + ADOS )
fit_tw <- lmFit(mDat, design_tw)
fit2_tw <- eBayes(fit_tw)
summary(decideTests(fit2_tw))## (Intercept) Twin_Group2 Twin_Group3 Twin_Group4 Twin_Group6 Twin_Group7
## Down 245472 8632 4657 5582 3441 3896
## NotSig 42797 762396 793722 790564 793202 795941
## Up 514378 31619 4268 6501 6004 2810
## Twin_Group8 Twin_Group12 Twin_Group13 ADOS
## Down 2567 3672 7139 0
## NotSig 796786 795931 791579 802647
## Up 3294 3044 3929 0top <- topTable(fit2_tw,coef="ADOS",num=Inf, sort.by = "P")
head(top)## logFC AveExpr t P.Value adj.P.Val B
## cg07655025 -0.08549494 -4.3361600 -6.706650 2.280954e-05 0.8764716 3.048127
## cg18253799 0.10050634 4.6851023 5.976848 6.701452e-05 0.8764716 2.036801
## cg25032595 -0.07058064 -4.5040270 -5.801969 8.770901e-05 0.8764716 1.781884
## cg16956665 0.12289700 0.6660224 5.770673 9.207795e-05 0.8764716 1.735749
## cg06705930 -0.06116458 0.6547421 -5.605520 1.192764e-04 0.8764716 1.489691
## cg18845598 -0.08757818 0.5607065 -5.586211 1.229715e-04 0.8764716 1.460639nsig <- sum(top$adj.P.Val < 0.05)
sum(top$P.Value< 0.05)## [1] 30545ann_sub =
ann[,c("chr","pos","strand","Name","Islands_Name",
"Relation_to_Island","UCSC_RefGene_Name","UCSC_RefGene_Group")]
output <-merge(ann_sub,top,by.x="Name",by.y="row.names")
write.csv(output[order(output$P.Value),],
file="ASD_blood_top_dmps_onADOS_withintw_Nov27_limma.csv",row.names=FALSE)
top1000 <- topTable(fit2_tw,coef="ADOS",num=1000, sort.by = "P")
output_1000 <- merge(ann_sub,top1000,by.x="Name",by.y="row.names")
write.csv(output_1000[order(output_1000$P.Value),],
file="ASD_blood_top_dmps_onADOS_Nov27_withintw_limma_top1k.csv",row.names=FALSE)
saveRDS(design_tw, "bl_design.rds")
saveRDS(mvals, "bl_mvals.rds")
output <- output[order(output$P.Value),]
output <- subset(output,P.Value<1e-4)
output %>% kbl() %>% kable_paper("hover", full_width = F)| Name | chr | pos | strand | Islands_Name | Relation_to_Island | UCSC_RefGene_Name | UCSC_RefGene_Group | logFC | AveExpr | t | P.Value | adj.P.Val | B |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| cg07655025 | chr19 | 12835001 |
|
chr19:12833104-12833574 | S_Shore | TNPO2 | TSS200 | -0.0854949 | -4.3361600 | -6.706650 | 2.28e-05 | 0.8764716 | 3.048127 |
| cg18253799 | chr17 | 78069191 |
|
OpenSea | CCDC40 | Body | 0.1005063 | 4.6851023 | 5.976848 | 6.70e-05 | 0.8764716 | 2.036801 | |
| cg25032595 | chr13 | 96204978 |
|
chr13:96204691-96205496 | Island | CLDN10;CLDN10;CLDN10;CLDN10 | 5’UTR;1stExon;Body;Body | -0.0705806 | -4.5040270 | -5.801969 | 8.77e-05 | 0.8764716 | 1.781885 |
| cg16956665 | chr11 | 125479362 |
|
OpenSea | STT3A | Body | 0.1228970 | 0.6660224 | 5.770674 | 9.21e-05 | 0.8764716 | 1.735749 |
Converting to beta from M values
bDat = ilogit2(mDat)
bDat_new = getBeta(gmset_flt)
#View(bDat)
write.csv(bDat,file="ASD_blood_beta_onADOS_withintw_Nov27.csv",row.names=TRUE)RUV
Extract illumina negative control
#Extract illumina negative control
INCs <- getINCs(rgSet)
head(INCs)## S1 S2 S29 S30 S9 S10
## 10609447 -1.5065914 -1.24236084 -0.59909678 -0.5831328 -1.5189237 -0.76782656
## 10627500 -1.3285460 -1.07038933 -1.72855335 -0.9713172 -1.0464356 -0.44029029
## 10676356 0.1764266 0.08092000 -0.15869775 0.1255309 -1.1634987 -0.51986747
## 10731326 0.4106323 0.06307868 0.03016197 -0.5590839 0.1761570 -0.05690239
## 10732387 -0.4745385 -0.23967041 -0.53923523 -0.3638468 -0.6445865 -0.76411174
## 10740401 -0.9763874 -0.99001591 -0.47974319 -0.4807351 -0.8479969 -1.15094190
## S15 S16 S19 S20 S25
## 10609447 -0.64566471 -0.21626868 -0.86891672 0.05188674 -0.58686203
## 10627500 -0.81072965 -0.71095527 -0.92926549 -0.64519761 -0.44130018
## 10676356 0.04907599 0.18111268 -0.13445020 -0.23606736 0.65802596
## 10731326 0.58814375 0.59560974 0.01849634 0.20945337 0.14201900
## 10732387 -0.16520259 -0.18442457 -0.69187770 -0.07635089 -0.47175189
## 10740401 -0.68352634 -0.03151097 -0.72662365 -0.19513034 -0.00698643
## S26 S5 S6 S37 S38 S33
## 10609447 -0.75754196 -0.5065013 -0.2752577 -0.73515544 -0.6072612 -1.0923936
## 10627500 -1.17338056 -1.0027298 -0.3681837 -0.67384378 -1.5506926 -0.9083254
## 10676356 -0.46284898 0.2925535 -0.1317057 -0.34421616 0.1687877 -0.2043585
## 10731326 -0.02008425 0.1387641 0.4030221 -0.31633263 -0.0489096 0.7004397
## 10732387 -0.52299675 0.3569345 -0.1934058 -0.46588664 -0.3987969 -0.5360529
## 10740401 0.19826963 -0.3289001 -0.7438520 -0.06737544 -0.3243508 -0.9018196
## S34
## 10609447 -1.232429944
## 10627500 -1.019628807
## 10676356 0.006455022
## 10731326 0.198226110
## 10732387 -0.068386975
## 10740401 -1.190016419#add negative control data to M-values
Mc <- rbind(mvals,INCs)
ctl <- rownames(Mc) %in% rownames(INCs)
table(ctl)## ctl
## FALSE TRUE
## 802647 411#old RUV syntax is updated
#rfit1 <- RUVfit(data=Mc, design=design_tw, coef=2, ctl=ctl) # Stage 1 analysis
# this is the updatedcommand - not sure if correct
rfit1 <- RUVfit(Y = Mc, X = design_tw[,"ADOS"] , ctl = ctl) # Stage 1 analysis
rfit2 <- RUVadj(Y = Mc, fit = rfit1)
top1 <- topRUV(rfit2, num=Inf)
head(top1)## F.p F.p.BH p_X1 p.BH_X1 b_X1 sigma2
## cg00572586 1.414441e-05 0.9578812 1.414441e-05 0.9578812 -0.08415467 0.08866704
## cg00803088 1.618145e-05 0.9578812 1.618145e-05 0.9578812 0.10439947 0.13968801
## cg00320749 3.698510e-05 0.9578812 3.698510e-05 0.9578812 0.07541332 0.08445622
## cg14409477 6.030022e-05 0.9578812 6.030022e-05 0.9578812 -0.13385434 0.29123795
## cg11078128 6.182711e-05 0.9578812 6.182711e-05 0.9578812 -0.05875059 0.05636982
## cg00363045 8.638740e-05 0.9578812 8.638740e-05 0.9578812 0.05686123 0.05626600
## var.b_X1 fit.ctl mean
## cg00572586 0.0001889869 FALSE -3.390343
## cg00803088 0.0002977341 FALSE -4.949021
## cg00320749 0.0001800118 FALSE -3.962859
## cg14409477 0.0006207510 FALSE 4.904113
## cg11078128 0.0001201479 FALSE 2.941155
## cg00363045 0.0001199266 FALSE 1.492849#ctl <- rownames(mValsSq) %in% rownames(top1[top1$p.ebayes > 0.5,])
#bottom 80% used as negative controls
ctl <- rownames(mvals) %in% rownames(top1[ceiling(0.2*nrow(top1)):nrow(top1),])
table(ctl)## ctl
## FALSE TRUE
## 160493 642154# Perform RUV adjustment and fit
rfit1 <- RUVfit(Y = mvals, X=design_tw[,"ADOS"], ctl=ctl) # Stage 2 analysis
rfit2 <- RUVadj(Y = mvals, fit=rfit1)
top_ruv <- topRUV(rfit2, number = Inf)
top_ruv_1000 <- topRUV(rfit2, number = 1000)
head(top_ruv_1000)## F.p F.p.BH p_X1 p.BH_X1 b_X1 sigma2
## cg15423357 9.373843e-07 0.1816602 9.373843e-07 0.1816602 0.11681705 0.10649028
## cg19385288 1.151102e-06 0.1816602 1.151102e-06 0.1816602 -0.06093460 0.02995251
## cg06705862 1.360289e-06 0.1816602 1.360289e-06 0.1816602 0.09178861 0.06983344
## cg16245467 2.859827e-06 0.1816602 2.859827e-06 0.1816602 0.11235703 0.11827501
## cg21130286 3.317656e-06 0.1816602 3.317656e-06 0.1816602 0.06665668 0.04267533
## cg14117219 4.551515e-06 0.1816602 4.551515e-06 0.1816602 0.11696344 0.13860443
## var.b_X1 fit.ctl mean
## cg15423357 2.203851e-04 FALSE -3.3222103
## cg19385288 6.198770e-05 FALSE 3.2461306
## cg06705862 1.445226e-04 FALSE -0.5582801
## cg16245467 2.447740e-04 FALSE 2.8173011
## cg21130286 8.831798e-05 FALSE -2.9737341
## cg14117219 2.868464e-04 FALSE -3.7461062#dat_subset_ruv = as.matrix(subset(mValsSq, rownames(mValsSq) %in% rownames(top_ruv_1000)))
#heatmap.2(dat_subset_ruv, cexRow=0.8, cexCol=0.8, col=colorRampPalette(c("Blue","Yellow")), density.info="none", trace="none", scale="row", main="diff meth probes due to epilepsy")
output_ruv = merge(ann,top_ruv,by.x="Name",by.y="row.names")
output_ruv_1000 = merge(ann,top_ruv_1000,by.x="Name",by.y="row.names")
#output_full_epicanno = merge(ann_epic,top,by.x="Name",by.y="row.names")
write.csv(output_ruv[order(output_ruv$F.p),],
file="ASD_blood_topruv80pc_dmps_onADOS_withintw_Nov29.csv",
row.names=FALSE)
write.csv(output_ruv_1000[order(output_ruv_1000$F.p),],
file="ASD_blood_topruv80pc_1kdmps_onADOS_withintw_Nov29.csv",
row.names=FALSE)
output_ruv <- data.frame(output_ruv[order(output_ruv$F.p),])
output_ruv <- output_ruv[order(output_ruv$p_X1),]
output_ruv <- subset(output_ruv,p_X1<1e-4)
output_ruv %>% kbl() %>% kable_paper("hover", full_width = F)| Name | chr | pos | strand | AddressA | AddressB | ProbeSeqA | ProbeSeqB | Type | NextBase | Color | Probe_rs | Probe_maf | CpG_rs | CpG_maf | SBE_rs | SBE_maf | Islands_Name | Relation_to_Island | Forward_Sequence | SourceSeq | UCSC_RefGene_Name | UCSC_RefGene_Accession | UCSC_RefGene_Group | Phantom4_Enhancers | Phantom5_Enhancers | DMR | X450k_Enhancer | HMM_Island | Regulatory_Feature_Name | Regulatory_Feature_Group | GencodeBasicV12_NAME | GencodeBasicV12_Accession | GencodeBasicV12_Group | GencodeCompV12_NAME | GencodeCompV12_Accession | GencodeCompV12_Group | DNase_Hypersensitivity_NAME | DNase_Hypersensitivity_Evidence_Count | OpenChromatin_NAME | OpenChromatin_Evidence_Count | TFBS_NAME | TFBS_Evidence_Count | Methyl27_Loci | Methyl450_Loci | Random_Loci | F.p | F.p.BH | p_X1 | p.BH_X1 | b_X1 | sigma2 | var.b_X1 | fit.ctl | mean |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| cg15423357 | chr2 | 25149977 |
|
21670850 | 48689917 | AAACAACATATAAATACTAAATAATTCCAAAACCTCTACAAAACATCACA | AAACGACATATAAATACTAAATAATTCCGAAACCTCTACGAAACGTCACG | I | T | Red | NA | NA | NA | NA | NA | NA | OpenSea | CCACGGAGCGTGAAACGGCATGTGAATGCTGAGTAATTCCGAGGCCTCTGCGGGACGTCA[CG]TTTCCAAAAGCGCGCGAGCCCTGCCCCTCCGGCAAGAGGCACCATAGAAATGTGTGCTAA | CGTGACGTCCCGCAGAGGCCTCGGAATTACTCAGCATTCACATGCCGTTT | TRUE | 2:25003416-25003797 | chr2:25149445-25150275 | 3 | TRUE | 9.00e-07 | 0.1816602 | 9.00e-07 | 0.1816602 | 0.1168170 | 0.1064903 | 0.0002204 | FALSE | -3.3222103 | |||||||||||||||||||||
| cg19385288 | chr2 | 204884794 |
|
92781897 | ATTTAACACACTACCTATCAACTTTAACAAATTACTTAATTTCTCAATAC | II | rs1427369 | 0.421381 | NA | NA | NA | NA | OpenSea | CATGACAACCCTCCGAGTTAGGCAGTATCATTATCCTCATTTTATAGGTGTAGTAACTAA[CG]TATTGAGAAATTAAGTAACTTGCTAAAGTTGATAGGCAGTGTGTTAAATAATATAGCTCT | TTTAACACACTGCCTATCAACTTTAGCAAGTTACTTAATTTCTCAATACG | chr2:204884276-204884811 | 6 | chr2:204884221-204885319 | 6 | 1.20e-06 | 0.1816602 | 1.20e-06 | 0.1816602 | -0.0609346 | 0.0299525 | 0.0000620 | FALSE | 3.2461306 | ||||||||||||||||||||||||||
| cg06705862 | chr3 | 128151236 |
|
32620243 | 83629880 | AAAAAAAATACTCACTAATCCAAATAAACACAATAACAACAAAACCAACA | AAAAAAAATACTCACTAATCCAAATAAACACGATAACGACGAAACCAACG | I | A | Red | NA | NA | NA | NA | NA | NA | chr3:128151656-128152180 | N_Shore | GCCGCGTACAGGAGGGAGGGTGCTCACTGGTCCAGGTGAGCACGATGGCGGCGGGACCAG[CG]GCCGGAACTGGGAGGGGGAGACGCCTCTGGGGAGACGTCCAAGGTGGAGCCAGCGGAGAG | AGGGAGGGTGCTCACTGGTCCAGGTGAGCACGATGGCGGCGGGACCAGCG | 3:129633908-129634805 | 3:128151133-128152320 | Unclassified_Cell_type_specific | chr3:128151125-128151435 | 3 | TRUE | 1.40e-06 | 0.1816602 | 1.40e-06 | 0.1816602 | 0.0917886 | 0.0698334 | 0.0001445 | FALSE | -0.5582801 | |||||||||||||||||||
| cg16245467 | chr5 | 75903476 |
|
80729191 | CCCCAACCCCCACCTAATAATATTAAACATCTACTCAAATTAAAACTTAC | II | NA | NA | NA | NA | NA | NA | OpenSea | TTAGCTCTTTTCTGATACTTGGCTTGGGAGTTTATGGTTCTTGCCAGACGTTAGTCAAGA[CG]CAAGCTCTAATTTGAGCAGATGTTCAACATCATCAGGTGGGGGTTGGGGGACCACCACTG | CGCAAGCTCTAATTTGAGCAGATGTTCAACATCATCAGGTGGGGGTTGGG | IQGAP2;IQGAP2;IQGAP2;IQGAP2 | NM_001285462;NM_001285461;NM_006633;NM_001285460 | TSS1500;TSS1500;Body;Body | TRUE | CTD-2236F14.1;IQGAP2;IQGAP2 | ENST00000511327.1;ENST00000545384.1;ENST00000502745.1 | 3’UTR;TSS1500;TSS1500 | CTD-2236F14.1;IQGAP2;IQGAP2;IQGAP2;IQGAP2 | ENST00000511327.1;ENST00000514001.1;ENST00000509074.1;ENST00000502745.1;ENST00000504254.1 | 3’UTR;TSS1500;TSS1500;TSS1500;TSS1500 | chr5:75903265-75903530 | 3 | 2.90e-06 | 0.1816602 | 2.90e-06 | 0.1816602 | 0.1123570 | 0.1182750 | 0.0002448 | FALSE | 2.8173011 | ||||||||||||||||||
| cg21130286 | chr3 | 193688638 |
|
8790983 | AAATACATTCTACATTCCTCACAAAACAAAAAACATATCAACTAACAAAC | II | NA | NA | NA | NA | NA | NA | OpenSea | GGGAGGTCATTGTAATTGTCAGGAAATTCATATCAGATTAAGGCCAGTTTTGCCTCCCCA[CG]TCTGTCAGCTGACATGTCTTCTGCCCTGTGAGGAATGCAGAATGCATCTGCTCCCCCTTC | GATGCATTCTGCATTCCTCACAGGGCAGAAGACATGTCAGCTGACAGACG | LOC647323 | NR_033944 | Body | RP11-699L21.1 | ENST00000397645.2 | 3’UTR | RP11-699L21.1 | ENST00000397645.2 | 3’UTR | chr3:193688445-193689035 | 3 | 3.30e-06 | 0.1816602 | 3.30e-06 | 0.1816602 | 0.0666567 | 0.0426753 | 0.0000883 | FALSE | -2.9737341 | |||||||||||||||||||
| cg14117219 | chr9 | 94476689 |
|
48708970 | AAAAAAAAACCCTTTCAAAACAATTTATACTCCTATTCAACCCAAAAAAC | II | NA | NA | NA | NA | NA | NA | OpenSea | GAAAAAAAAAAAAAAAAAAACCCTTTCAGAACAGTTTGTGCTCCTGTTCAGCCCAGGAGA[CG]TCGTTCCTGCTTTTACGCGGCGCCATGTCCTTCTTGGCGTACACTTGGCAAAACAGAATG | AAAAAAAACCCTTTCAGAACAGTTTGTGCTCCTGTTCAGCCCAGGAGACG | DMR | TRUE | 9:93516510-93516827 | chr9:94476565-94477015 | 3 | TRUE | 4.60e-06 | 0.1816602 | 4.60e-06 | 0.1816602 | 0.1169634 | 0.1386044 | 0.0002868 | FALSE | -3.7461062 | ||||||||||||||||||||||||
| cg17380795 | chr3 | 122379686 |
|
91804526 | 31801983 | AACAATTTAAAAAAACCACTCCAATCAATAATAAATTCCCTAACAACCCA | AACGATTTAAAAAAACCGCTCCGATCGATAATAAATTCCCTAACAACCCG | I | T | Red | NA | NA | NA | NA | NA | NA | OpenSea | AACGATGACGATGTGTATAGGGCGCCCCCAGTTGACCGTTCCATCCTTCCCACTGCTCCA[CG]GGCTGCTAGGGAACCCATTATCGACCGGAGCGGTCTTCCCAAATCGCCACCCTACACTGC | CGGGCTGCTAGGGAACCCATTATCGACCGGAGCGGTCTTCCCAAATCGCC | chr3:122379671-122379671 | 3:123862338-123862423 | chr3:122379540-122379730 | 3 | TRUE | 4.80e-06 | 0.1816602 | 4.80e-06 | 0.1816602 | 0.0913391 | 0.0854085 | 0.0001768 | FALSE | 3.6466114 | |||||||||||||||||||||
| cg24749559 | chr5 | 141616065 |
|
87670873 | 71606284 | TTTTATCTACAACTTATCCTACTACAATAAAACTTCCAAACCCAAAAACA | TTTTATCTACGACTTATCCTACTACAATAAAACTTCCGAACCCGAAAACG | I | A | Red | NA | NA | NA | NA | NA | NA | OpenSea | GAGGCAGCAACCGGACTGCATGGCGAGTGGGAGGGTGTGGAGTCTGGCTTCTGTACAGCC[CG]TTTTCGGGCTCGGAAGCTCCACTGTAGCAGGACAAGCCGCAGACAAAACTCCTCAGACAC | TTTTGTCTGCGGCTTGTCCTGCTACAGTGGAGCTTCCGAGCCCGAAAACG | 5:141596249-141596384 | chr5:141615800-141616175 | 3 | TRUE | 5.00e-06 | 0.1816602 | 5.00e-06 | 0.1816602 | 0.0636139 | 0.0416376 | 0.0000862 | FALSE | -2.1206044 | ||||||||||||||||||||||
| cg13076460 | chr3 | 192490624 |
|
67810822 | TTTCAACCCTTAACCRTCTATTATATCCTTAACCTACTATTATATCCATC | II | NA | NA | NA | NA | NA | NA | OpenSea | GGCAGTAATACATGAACCTAGGAGAACAGAATGATGTTTGTCTCTGGGAACAGTTGTAGG[CG]ATGGATATAATAGTAGGTTAAGGATATAATAGACGGTTAAGGGTTGAAACCGTCTCTGCT | TTCAACCCTTAACCGTCTATTATATCCTTAACCTACTATTATATCCATCG | chr3:192490326-192490673 | 6 | chr3:192489872-192490803 | 6 | 6.50e-06 | 0.1816602 | 6.50e-06 | 0.1816602 | 0.0767836 | 0.0634969 | 0.0001314 | FALSE | 1.6326846 | ||||||||||||||||||||||||||
| cg03128972 | chr17 | 19140659 |
|
23799939 | 46711986 | AAAAACATAATCTACAAACATAAAAACAAAACCTCAAAACCTCAAAAACA | AAAAACGTAATCTACGAACGTAAAAACGAAACCTCGAAACCTCGAAAACG | I | A | Red | rs191982618 | 0.012400 | NA | NA | NA | NA | chr17:19140307-19141648 | Island | TGGCGGGGTCGCAGGGGCGTGGTCTGCGGGCGTGGGGGCGGGACCTCGGGGCCTCGGGGG[CG]GGGCCTGAGGGCGCGCGCACGCGTCCGGCGCGCCCCCTCCCGGCCGCCATGTTGGCTGGT | CGCCCCCGAGGCCCCGAGGTCCCGCCCCCACGCCCGCAGACCACGCCCCT | EPN2;EPN2;EPN2 | NM_014964;NM_001102664;NM_148921 | TSS200;TSS200;TSS200 | 17:19080840-19082382 | 17:19140498-19141783 | Promoter_Associated_Cell_type_specific | EPN2;EPN2;EPN2 | ENST00000347697.2;ENST00000395618.3;ENST00000575595.1 | TSS200;TSS200;TSS200 | EPN2;EPN2;EPN2;EPN2 | ENST00000347697.2;ENST00000395618.3;ENST00000395628.2;ENST00000494192.2 | TSS200;TSS200;TSS200;TSS200 | chr17:19140540-19140795 | 3 | TRUE | 6.70e-06 | 0.1816602 | 6.70e-06 | 0.1816602 | -0.0532367 | 0.0307132 | 0.0000636 | FALSE | -2.7291915 | ||||||||||
| cg15138543 | chr4 | 987391 |
|
30697218 | AAAATTAAAACTATATAAACCTCTAAAAAACTCCCAACCTCCCAAAAACC | II | NA | NA | rs3806756 | 0.344262 | NA | NA | chr4:984926-985695 | S_Shore | AGGGGCTTGTAGGAGTTAGAGCTGTGTGGGCCTCTGAGGAGCTCCCAGCCTCCCAGGAGC[CG]CTGCAGCTGTGGCTCTGCGGCCCTGCCGGGGGGGCTTAGGGACCAGCGGGAGGCGGGGGC | CGGCTCCTGGGAGGCTGGGAGCTCCTCAGAGGCCCACACAGCTCTAACTC | IDUA;SLC26A1;SLC26A1;SLC26A1 | NM_000203;NM_134425;NM_213613;NM_022042 | Body;TSS1500;TSS200;TSS1500 | 4:987203-987402 | Unclassified_Cell_type_specific | SLC26A1;SLC26A1;SLC26A1 | ENST00000361661.2;ENST00000398516.2;ENST00000398520.2 | TSS200;TSS200;TSS1500 | SLC26A1;SLC26A1;SLC26A1;IDUA;IDUA;IDUA | ENST00000361661.2;ENST00000398516.2;ENST00000398520.2;ENST00000514698.1;ENST00000508168.1;ENST00000506561.1 | TSS200;TSS200;TSS1500;5’UTR;5’UTR;5’UTR | chr4:987180-987455 | 3 | TRUE | 6.80e-06 | 0.1816602 | 6.80e-06 | 0.1816602 | -0.1593647 | 0.2756434 | 0.0005705 | FALSE | -0.1161192 | |||||||||||||||
| cg00572586 | chr17 | 17109740 |
|
5624140 | CRTAACCTAATACRTAACAATTAACAAAACRTAATAAAACRTAACCTAAC | II | NA | NA | NA | NA | NA | NA | chr17:17109893-17110296 | N_Shore | CCCCCGTCACGCGCCGCCAGCGGCCATGTGCCAGGCCACGCCCAGCCCCCCATGGCCACG[CG]CCAGGCCACGCCCTATCACGTCCTGCCAATTGCCACGCACCAGGCCACGCCCCCGTCACG | CGCCAGGCCACGCCCTATCACGTCCTGCCAATTGCCACGCACCAGGCCAC | PLD6 | NM_178836 | TSS200 | TRUE | 17:17049497-17051315 | 17:17108465-17110453 | Promoter_Associated | PLD6;PLD6 | ENST00000321560.2;ENST00000427497.2 | TSS200;TSS200 | PLD6;PLD6 | ENST00000321560.2;ENST00000427497.2 | TSS200;TSS200 | chr17:17109145-17109955 | 3 | TRUE | 7.20e-06 | 0.1816602 | 7.20e-06 | 0.1816602 | -0.0773688 | 0.0656056 | 0.0001358 | FALSE | -3.3903429 | |||||||||||||
| cg20290983 | chr6 | 43655470 |
|
99779450 | 22743253 | AAAATAACAACCCTCAAAACTCTAATATCCAACTATAAACAACTTCTCCA | AAAATAACGACCCTCAAAACTCTAATATCCGACTATAAACGACTTCTCCG | I | T | Red | NA | NA | NA | NA | NA | NA | chr6:43655271-43655618 | Island | CTGAACCCGCGAGCTGGAAGCCGAGACCAGCTGGTCGCTGCCGGGCCCGCTAGTAGCCCA[CG]GAGAAGCCGCCCACAGCCGGACACCAGAGCCTTGAGGGCCGCCATCTTCAAAAACCTACC | CGGAGAAGCCGCCCACAGCCGGACACCAGAGCCTTGAGGGCCGCCATCTT | MRPS18A | NM_018135 | 1stExon | high-CpG:43763442-43763536 | 6:43763167-43763659 | 6:43655181-43656153 | Promoter_Associated | MRPS18A;MRPS18A | ENST00000372133.3;ENST00000372118.2 | 1stExon;1stExon | MRPS18A;MRPS18A | ENST00000372133.3;ENST00000372118.2 | 1stExon;1stExon | chr6:43655180-43655730 | 3 | TRUE | 8.10e-06 | 0.1816602 | 8.10e-06 | 0.1816602 | 0.1803334 | 0.3635500 | 0.0007524 | FALSE | -4.4947476 | |||||||||
| cg12765123 | chr10 | 132100019 |
|
20750289 | 23642888 | CAAACAACTCAAACTAACAAACCCTACAAACAAAAAAACAAACAAACCCA | CGAACAACTCAAACTAACGAACCCTACAAACAAAAAAACGAACAAACCCG | I | A | Red | NA | NA | NA | NA | NA | NA | OpenSea | CCTGCCTGCAGGGCCTGCAGGCCCGGCTGGGAGGCTCAGCTGGCCCCGGGGACCGCCTGC[CG]GGTCTGCCCGCTCTCCTGCCTGCAGGGCCCGCCAGCCTGAGCTGCTCGCTGTCCTGCCTG | CGAGCAGCTCAGGCTGGCGGGCCCTGCAGGCAGGAGAGCGGGCAGACCCG | 10:131988882-131990058 | chr10:132099640-132100195 | 3 | TRUE | 8.40e-06 | 0.1816602 | 8.40e-06 | 0.1816602 | 0.0762847 | 0.0654654 | 0.0001355 | FALSE | -0.5653133 | ||||||||||||||||||||||
| cg27485649 | chr1 | 165986832 |
|
4686434 | CTAAAAATACAATAAACATTCCAAACCCTCTATAAAATCCTACAAAAAAC | II | rs12089882 | 0.035276 | NA | NA | NA | NA | OpenSea | AGACAGTTCTTCCGTCAGGGTGATGAGTGAGGAGGTCTCTGGGGCCTGTGGACTGCAGTG[CG]CCCCCTGCAGGATTTCACAGAGGGTCTGGAATGCTTACTGCACTCTCAGGGACCCTTGGA | CGCCCCCTGCAGGATTTCACAGAGGGTCTGGAATGCTTACTGCACTCTCA | chr1:165986720-165987055 | 3 | 8.80e-06 | 0.1816602 | 8.80e-06 | 0.1816602 | 0.0623138 | 0.0441015 | 0.0000913 | FALSE | -3.2784110 | ||||||||||||||||||||||||||||
| cg11392858 | chr17 | 17109651 |
|
23607846 | 47769531 | ACTAACAACACATAACAAAAACATAACCTAACAATCTAAAACTAAAAACA | GCTAACGACGCGTAACGAAAACGTAACCTAACGATCTAAAACTAAAAACG | I | C | Grn | NA | NA | NA | NA | NA | NA | chr17:17108771-17109701 | Island | ACCGTCCCATGCCGCCGCTAATCCGGGACCCACAGCCACGCCGCCGCAGCGGAGTCTGCG[CG]CCCCCAGCCCTAGACCGCCAGGCCACGCCCCCGTCACGCGCCGCCAGCGGCCATGTGCCA | CGCCCCCAGCCCTAGACCGCCAGGCCACGCCCCCGTCACGCGCCGCCAGC | PLD6 | NM_178836 | TSS200 | high-CpG:17050238-17050409 | TRUE | 17:17049497-17051315 | 17:17108465-17110453 | Promoter_Associated | PLD6;PLD6 | ENST00000321560.2;ENST00000427497.2 | TSS200;TSS200 | PLD6;PLD6 | ENST00000321560.2;ENST00000427497.2 | TSS200;TSS200 | chr17:17109145-17109955 | 3 | TRUE | 8.90e-06 | 0.1816602 | 8.90e-06 | 0.1816602 | -0.0433909 | 0.0214233 | 0.0000443 | FALSE | -4.2877135 | ||||||||
| cg03534375 | chr3 | 57743163 |
|
26688188 | 20809551 | AAAAAAATAAACTAAAAACTACCAATTAAAAACTTTTTATAATCACAACA | AAAAAAATAAACTAAAAACTACCAATTAAAAACTTTTTATAATCACGACG | I | T | Red | NA | NA | NA | NA | NA | NA | chr3:57741925-57742990 | S_Shore | TTCTTCCCAGAGAAGAAGATGGACTGAAAGCTGCCAGTTGGGGACTTTTTGTGATCACGG[CG]TTGCAGCGTTTTAAAGGAGGTGATGGGGCTTGCGCTGGCTTGTCTTCCCACCCAAGTGAA | CGCCGTGATCACAAAAAGTCCCCAACTGGCAGCTTTCAGTCCATCTTCTT | SLMAP | NM_007159 | TSS200 | 3:57716912-57718238 | SLMAP;SLMAP;SLMAP;SLMAP | ENST00000295951.3;ENST00000416870.1;ENST00000383718.3;ENST00000537224.1 | 5’UTR;TSS200;TSS200;TSS200 | SLMAP;SLMAP;SLMAP;SLMAP;SLMAP;SLMAP | ENST00000295951.3;ENST00000416870.1;ENST00000467901.1;ENST00000383718.3;ENST00000537224.1;ENST00000467901.1 | 5’UTR;TSS200;1stExon;TSS200;TSS200;5’UTR | chr3:57742185-57743275 | 3 | TRUE | 9.50e-06 | 0.1816602 | 9.50e-06 | 0.1816602 | -0.0503278 | 0.0291481 | 0.0000603 | FALSE | 0.3955954 | ||||||||||||
| cg07731336 | chr16 | 20177934 |
|
57657844 | 62703879 | TTACACCTTATACAACATATCCAAATTAACCAAAATCCACCAAACTATCA | TTACACCTTATACGACGTATCCAAATTAACCGAAATCCACCAAACTATCG | I | A | Red | NA | NA | rs11074436 | 0.153328 | NA | NA | OpenSea | GGGTCTGCACATTTACACCTTATGCGACGTGTCCAAATTGACCGGGATCCACCAAGCTAT[CG]GCAGTTAGAAGTCTCTCTCTTCCAGTGAGCAGTTTTCTGCATGTTTGCCCAGGTCTCCCT | TTACACCTTATGCGACGTGTCCAAATTGACCGGGATCCACCAAGCTATCG | TRUE | TRUE | 9.70e-06 | 0.1816602 | 9.70e-06 | 0.1816602 | 0.1748466 | 0.3530873 | 0.0007307 | FALSE | 3.1007038 | ||||||||||||||||||||||||
| cg04123498 | chr8 | 142283564 |
|
46629272 | CAACCTAAAATACCCATAAACCCTAAAATAAACTAAATCTCCTCTAAATC | II | NA | NA | rs13253108 | 0.248082 | rs13253108 | 0.248082 | OpenSea | AGCGCCAGTATCAACCTGAAATGCCCATAAGCCCTAGGATAAACTAGGTCTCCTCTGAGT[CG]CGGTTACTTTAGGAGCAAACGCAGGTACAAACAAACTGAGTCTGTCACCCGCAGCGTGGG | AACCTGAAATGCCCATAAGCCCTAGGATAAACTAGGTCTCCTCTGAGTCG | 8:142352598-142352839 | SLC45A4 | ENST00000521804.1 | 3’UTR | SLC45A4;SLC45A4 | ENST00000520137.1;ENST00000521804.1 | 5’UTR;3’UTR | chr8:142283222-142284000 | 6 | TRUE | 9.80e-06 | 0.1816602 | 9.80e-06 | 0.1816602 | 0.1578351 | 0.2882330 | 0.0005965 | FALSE | 2.7462411 | ||||||||||||||||||||
| cg01246599 | chr19 | 11367088 |
|
23733930 | TCCTATAATACAATCAACTAACTCTATAACTATAATATTACAAACCCRAC | II | NA | NA | NA | NA | NA | NA | OpenSea | GCTGGGCCTCCAGCTTCCTTTTCCCCTTGGCCTTGGAGAGAGGCCCCTGCAGTGGGAAAA[CG]CCGGGTCTGCAACACCACAGCCACAGAGCCAGCTGACTGCATCACAGGACTCTGCACGGA | CGCCGGGTCTGCAACACCACAGCCACAGAGCCAGCTGACTGCATCACAGG | DOCK6 | NM_020812 | Body | chr19:11366840-11367335 | 3 | 1.03e-05 | 0.1816602 | 1.03e-05 | 0.1816602 | 0.0511437 | 0.0305004 | 0.0000631 | FALSE | -3.1483112 | |||||||||||||||||||||||||
| cg09260603 | chr1 | 206809102 |
|
40655247 | 16698138 | AAACACAACTCATAAACCTAAACAAAAAAATACAAAACCACCTAAAACCA | AAACACAACTCGTAAACCTAAACGAAAAAATACGAAACCGCCTAAAACCG | I | A | Red | NA | NA | NA | NA | NA | NA | chr1:206808523-206809187 | Island | CTAGGAGATGGGAGGCACAGCTCGTGGGCCTGGGCGGAAGGATGCGGGGCCGCCTGGGGC[CG]GGCTCCCGCCCCAGCAGCGGAGGTAACGGCGCCACGGGGTAACGGGCTGGAGGCGCCACA | CGGCCCCAGGCGGCCCCGCATCCTTCCGCCCAGGCCCACGAGCTGTGCCT | DYRK3;DYRK3;DYRK3 | NM_001004023;NM_001004023;NM_003582 | 5’UTR;1stExon;1stExon | high-CpG:204875374-204875747 | 1:204875192-204876224 | 1:206807416-206809601 | Promoter_Associated | DYRK3;DYRK3;DYRK3;RP11-343H5.6;DYRK3;DYRK3;DYRK3 | ENST00000367109.2;ENST00000367108.3;ENST00000367108.3;ENST00000425161.1;ENST00000367106.1;ENST00000489878.1;ENST00000489878.1 | 1stExon;1stExon;5’UTR;TSS200;TSS200;1stExon;5’UTR | DYRK3;DYRK3;DYRK3;DYRK3;RP11-343H5.6;DYRK3;DYRK3;DYRK3 | ENST00000367109.2;ENST00000441486.1;ENST00000367108.3;ENST00000367108.3;ENST00000425161.1;ENST00000367106.1;ENST00000489878.1;ENST00000489878.1 | 1stExon;TSS200;1stExon;5’UTR;TSS200;TSS200;1stExon;5’UTR | chr1:206808985-206809775 | 3 | TRUE | 1.04e-05 | 0.1816602 | 1.04e-05 | 0.1816602 | 0.0441312 | 0.0227605 | 0.0000471 | FALSE | -2.6801279 | |||||||||
| cg05238218 | chr7 | 150803765 |
|
66652220 | CACCACACCCAACTAAATTTTATATTCTTAATAACACAAAATTTTACCRC | II | NA | NA | rs10085680 | 0.122040 | NA | NA | OpenSea | CAGGCACGTACCACCACACCCAGCTAAATTTTGTATTCTTAGTAGCACAAAGTTTTGCCG[CG]TTGGCCAGGCTGATCTCGAACTCCTGACCTCAGGTGATTCGCCCGCCTCAGGCTCAGGAT | CGCGGCAAAACTTTGTGCTACTAAGAATACAAAATTTAGCTGGGTGTGGT | AGAP3;AGAP3;AGAP3;AGAP3 | NM_001281300;NM_001308304;NM_001042535;NM_031946 | 5’UTR;Body;Body;Body | AGAP3;AGAP3;AGAP3 | ENST00000463381.1;ENST00000397232.1;ENST00000476375.1 | 5’UTR;5’UTR;5’UTR | AGAP3;AGAP3;AGAP3;AGAP3 | ENST00000490097.1;ENST00000463381.1;ENST00000397232.1;ENST00000476375.1 | 5’UTR;5’UTR;5’UTR;5’UTR | 1.06e-05 | 0.1816602 | 1.06e-05 | 0.1816602 | -0.1842509 | 0.3978781 | 0.0008234 | FALSE | -0.1893455 | |||||||||||||||||||||
| cg18697803 | chr3 | 38823996 |
|
90734309 | TTCCATTCTCTTTCTCTTTATTCTTATATATTTATACTATTCTTTCCCCC | II | NA | NA | NA | NA | NA | NA | OpenSea | TCCTCTGTGTTTTCCATTCTCTTTCTCTTTGTTCTTGTATATTTATACTGTTCTTTCCCC[CG]TGCTGTCATTCTATTGGCATTTTGAGAGGGTGGGGTAAAACATATGCATTCTATCTTCCA | CGGGGGAAAGAACAGTATAAATATACAAGAACAAAGAGAAAGAGAATGGA | SCN10A;SCN10A;SCN10A | NM_006514;NM_001293307;NM_001293306 | Body;Body;Body | chr3:38823725-38824035 | 3 | 1.07e-05 | 0.1816602 | 1.07e-05 | 0.1816602 | 0.1422516 | 0.2375823 | 0.0004917 | FALSE | 1.7000493 | |||||||||||||||||||||||||
| cg18525972 | chr12 | 52749958 |
|
18783111 | TTAAAAATTATTAACTACTCAAAACTACCCCRTAACATACCCATAACACC | II | NA | NA | NA | NA | NA | NA | OpenSea | CTCTGTGCCAGGACGCACTAGGCACCTAGACTTCGGAGAGGAGGGCGCCGACCCCGGCCA[CG]GTGCTATGGGCATGTCACGGGGCAGCCCTGAGCAGCCAATAACCCCCAAACACCCTGCCC | CGGTGCTATGGGCATGTCACGGGGCAGCCCTGAGCAGCCAATAACCCCCA | 12:51036178-51036913 | chr12:52749945-52750215 | 3 | TRUE | 1.11e-05 | 0.1816602 | 1.11e-05 | 0.1816602 | -0.0625440 | 0.0462398 | 0.0000957 | FALSE | 3.6145325 | ||||||||||||||||||||||||||
| cg18537456 | chr6 | 142652618 |
|
57604972 | AATACCCTTTTCAAAAAATCATATCATTACTAAATTCCCACTACATTTTC | II | NA | NA | NA | NA | NA | NA | OpenSea | CAGAAATGAAAAGAGATTCTTCTGTTCTGTGTCTGTCGGTATAATCATCATGCTGTATGA[CG]AAAATGCAGTGGGAACCCAGCAATGACATGACCCTCTGAAAAGGGTACTTTAAAAAACTT | GTACCCTTTTCAGAGGGTCATGTCATTGCTGGGTTCCCACTGCATTTTCG | ADGRG6;ADGRG6;ADGRG6;ADGRG6 | NM_001032394;NM_020455;NM_198569;NM_001032395 | Body;Body;Body;Body | GPR126 | ENST00000545477.1 | 5’UTR | GPR126;GPR126 | ENST00000415128.2;ENST00000545477.1 | 5’UTR;5’UTR | chr6:142652340-142652650 | 3 | 1.19e-05 | 0.1816602 | 1.19e-05 | 0.1816602 | -0.0636669 | 0.0485416 | 0.0001005 | FALSE | 1.0343203 | |||||||||||||||||||
| cg13088465 | chr1 | 227170628 |
|
93716327 | 97809247 | ATAAATACAACAACAAAAAACCACTCCTCAAAATATTCCAACTTATCCCA | ATAAATACGACGACGAAAAACCGCTCCTCGAAATATTCCAACTTATCCCG | I | C | Grn | rs36006006 | 0.026316 | NA | NA | NA | NA | OpenSea | GAGCCCCTCCCTGGCCCTGCCCTTCAGAAAACTCTCAACAACGACCTGGGCCCCAACTGG[CG]GGACAAGTTGGAATACTTCGAGGAGCGGCCCTTCGCCGCCGCATCCATTGGGCAGGTGCA | ATGGATGCGGCGGCGAAGGGCCGCTCCTCGAAGTATTCCAACTTGTCCCG | CABC1 | NM_020247 | Body | 1:225237232-225237293 | ADCK3 | ENST00000478406.1 | 5’UTR | ADCK3;ADCK3;ADCK3;ADCK3 | ENST00000485462.1;ENST00000490782.1;ENST00000479852.1;ENST00000478406.1 | 5’UTR;TSS1500;TSS200;5’UTR | chr1:227170165-227170695 | 3 | TRUE | 1.22e-05 | 0.1816602 | 1.22e-05 | 0.1816602 | -0.0724128 | 0.0629876 | 0.0001304 | FALSE | 5.9154713 | |||||||||||||
| cg03716591 | chr5 | 1653609 |
|
84776364 | AACRCAACTCAAATACAAAAACAAACTAAATCACAAAAACTACRAAAAAC | II | NA | NA | NA | NA | NA | NA | chr5:1653980-1654268 | N_Shore | GTCTTCCTCCATCAGGCTCCGGAAAAGCTTTCCCCAGAGAAGACACCGGACAGCAGGGGC[CG]CCTCCCGTAGCTCTTGTGACCCAGCCTGTTTCTGCATCTGAGCTGCGTCCTCTGGGTGGG | ACGCAGCTCAGATGCAGAAACAGGCTGGGTCACAAGAGCTACGGGAGGCG | RDMR | 5:1706254-1707344 | 5:1653362-1654883 | Unclassified | chr5:1653040-1653770 | 3 | TRUE | 1.23e-05 | 0.1816602 | 1.23e-05 | 0.1816602 | 0.0734404 | 0.0649053 | 0.0001343 | FALSE | -3.3210339 | ||||||||||||||||||||||
| cg10975354 | chr9 | 79792074 |
|
77758218 | TAATAAAAAAAAATACTCCCTAAAACAACCCCCTTAAAACTTCTAACRAC | II | NA | NA | rs12349251 | 0.093607 | rs12349251 | 0.093607 | chr9:79792070-79793328 | Island | CCACCCTGTAATGATGAGGGGAGATGCTCCCTGGGACAGCCCCCTTGAAGCTTCTGGCGA[CG]GGGCTGGGATCCGCCCACCCTTACTCAGGGGCGAGCCCTGTCATACGCGTGGAAGCGGCC | GATGAGGGGAGATGCTCCCTGGGACAGCCCCCTTGAAGCTTCTGGCGACG | VPS13A;VPS13A;LOC100286938;VPS13A;VPS13A | NM_001018038;NM_001018037;NR_026668;NM_033305;NM_015186 | TSS1500;TSS1500;Body;TSS1500;TSS1500 | 9:78981891-78983148 | 9:79791844-79792668 | Promoter_Associated | VPS13A;VPS13A;RP11-470P4.2;VPS13A | ENST00000376636.3;ENST00000357409.5;ENST00000415172.1;ENST00000376634.4 | TSS1500;TSS1500;3’UTR;TSS200 | VPS13A;VPS13A;VPS13A;RP11-470P4.2;VPS13A | ENST00000376636.3;ENST00000357409.5;ENST00000545365.1;ENST00000415172.1;ENST00000376634.4 | TSS1500;TSS1500;TSS1500;3’UTR;TSS200 | chr9:79791805-79792515 | 3 | TRUE | 1.26e-05 | 0.1816602 | 1.26e-05 | 0.1816602 | -0.2096806 | 0.5312485 | 0.0010994 | FALSE | -2.3184632 | ||||||||||||||
| cg24744031 | chr17 | 18057215 |
|
27773141 | 20673838 | ACAACTATCAAAACACCCCCTAAAAAATCTTCCTACACAAAAAAATACCA | ACGACTATCAAAACGCCCCCTAAAAAATCTTCCTACGCAAAAAAATACCG | I | A | Red | NA | NA | rs9916193 | 0.207725 | NA | NA | OpenSea | ATCCCAACTTCTACGGCTATCAGGACGCCCCCTGGAAGATCTTCCTGCGCAAAGAGGTGC[CG]AGCACAGCCGTAGCCAGGGGAGGGGCTGAAGCGGGGCAGGGGAGGGGCTGAAGCGAGCAG | CGGCACCTCTTTGCGCAGGAAGATCTTCCAGGGGGCGTCCTGATAGCCGT | MYO15A | NM_016239 | Body | TRUE | 17:17997802-17997951 | 17:18057014-18058179 | Unclassified | MYO15A;MYO15A;MYO15A | ENST00000418233.2;ENST00000536811.1;ENST00000205890.5 | 5’UTR;TSS200;ExonBnd | MYO15A;MYO15A;MYO15A | ENST00000418233.2;ENST00000536811.1;ENST00000205890.5 | 5’UTR;TSS200;ExonBnd | chr17:18057045-18057475 | 3 | TRUE | 1.27e-05 | 0.1816602 | 1.27e-05 | 0.1816602 | -0.0659285 | 0.0526449 | 0.0001090 | FALSE | -3.1741643 | ||||||||||
| cg18821122 | chr2 | 66916737 |
|
70612260 | AAATTTAATCAACATATTTAAAAACCTACCAACTATATACACAAAACTCC | II | NA | NA | rs1468817 | 0.179527 | rs1468817 | 0.179527 | OpenSea | TCTCTATTAAGGGCACTGCCAGCTGGATTATCAGAGTAGCGGACCTGTTCTAGAAAAGCA[CG]GAGCCCTGTGTACACAGTTGGCAGGCTTCTAAATATGCTGATCAAACTCTGCTGGAGATT | CGGAGCCCTGTGTACACAGTTGGCAGGCTTCTAAATATGCTGATCAAACT | LOC100507073 | NR_110156 | Body | AC007392.3;AC007392.3 | ENST00000423168.1;ENST00000433396.1 | TSS1500;5’UTR | AC007392.3;AC007392.3 | ENST00000423168.1;ENST00000433396.1 | TSS1500;5’UTR | 1.28e-05 | 0.1816602 | 1.28e-05 | 0.1816602 | 0.2080604 | 0.5249252 | 0.0010863 | FALSE | 2.9612662 | |||||||||||||||||||||
| cg01363860 | chr2 | 39722009 |
|
54699241 | ACCTTACRAATAATAACATCATAAACTATTTTACCCACTCTATTTATCTC | II | NA | NA | NA | NA | NA | NA | OpenSea | AACCCACAAAACCAAACCAAAAAACCTGTGCTCCTTACTGTGCTCTCCTGCCTCTCAGTG[CG]AGATAAACAGAGTGGGCAAAATAGCCTATGATGTCATCATCCGCAAGGCCTGTTGCTACT | CCTTGCGGATGATGACATCATAGGCTATTTTGCCCACTCTGTTTATCTCG | LOC728730 | NR_037875 | Body | chr2:39722003-39722003 | AC007246.3 | ENST00000449569.1 | 5’UTR | AC007246.3;AC007246.3;AC007246.3;AC007246.3;AC007246.3 | ENST00000426083.1;ENST00000443038.1;ENST00000422128.1;ENST00000449569.1;ENST00000446698.1 | 5’UTR;5’UTR;5’UTR;5’UTR;5’UTR | chr2:39721920-39722530 | 3 | 1.29e-05 | 0.1816602 | 1.29e-05 | 0.1816602 | 0.0470475 | 0.0268718 | 0.0000556 | FALSE | 2.0817169 | ||||||||||||||||||
| cg21152753 | chr15 | 90717994 |
|
29753255 | AATACCTACAAAACCAAACAAAAACTACCCATAAAAACTAACTAACTACC | II | NA | NA | NA | NA | NA | NA | OpenSea | GCATCTGGCCGGGTGCCTGCAGAACCAGGCAAGAACTGCCCATGAAAGCTGGCTGGCTGC[CG]GGAACTCGTTGTCTTTCCATTTAAACAGACACTGGCTGTCTGTTGAGTTTCTGGAAACAT | CGGCAGCCAGCCAGCTTTCATGGGCAGTTCTTGCCTGGTTCTGCAGGCAC | TRUE | SEMA4B | ENST00000559322.1 | 5’UTR | chr15:90717700-90718155 | 3 | TRUE | 1.36e-05 | 0.1816602 | 1.36e-05 | 0.1816602 | 0.0640260 | 0.0502503 | 0.0001040 | FALSE | 2.7054070 | |||||||||||||||||||||||
| cg12007105 | chr1 | 8534565 |
|
1663553 | ATCATTAAACATCTCTAAATCTCAAACAATCTTATTAACATAAACTCTAC | II | rs6577488 | 0.376795 | NA | NA | NA | NA | OpenSea | ATATTACAGCAGTCATTAAACATCTCTGGATCTCAGGCAGTCTTATTAGCATAAACTCTG[CG]TATTACCACAAGGTTTCAAGTTTCTATTCTGGCTTCTCATCTTAGCTACCATTTTCTGTC | CGCAGAGTTTATGCTAATAAGACTGCCTGAGATCCAGAGATGTTTAATGA | RERE;RERE | NM_001042681;NM_012102 | Body;Body | RERE | ENST00000480342.1 | 3’UTR | RERE;RERE | ENST00000464972.1;ENST00000480342.1 | 3’UTR;3’UTR | chr1:8534460-8534690 | 3 | 1.39e-05 | 0.1816602 | 1.39e-05 | 0.1816602 | -0.0533159 | 0.0349783 | 0.0000724 | FALSE | 3.3773034 | |||||||||||||||||||
| cg19096358 | chr5 | 178547695 |
|
74705224 | 67707196 | ATAAAACCACACTATAAAACACCCTCAAAAACTCCATACAACAATCAACA | ATAAAACCGCGCTATAAAACACCCTCGAAAACTCCATACAACAATCAACG | I | C | Grn | NA | NA | NA | NA | NA | NA | chr5:178547421-178548701 | Island | CGCCCCCTGGGTGTAAGGCCGCGCTGTGGAGCACCCTCGGGGGCTCCATGCAACAGTCAG[CG]CCGACTGGCCAGTGGGGCATCAGGGCAGACTCCAGTCCGCGGAGACGGACGGTGCGCACC | GTAAGGCCGCGCTGTGGAGCACCCTCGGGGGCTCCATGCAACAGTCAGCG | ADAMTS2 | NM_014244 | Body | 5:178480028-178480470 | ADAMTS2;ADAMTS2 | ENST00000522937.1;ENST00000523450.1 | 3’UTR;3’UTR | chr5:178547580-178548015 | 3 | TRUE | 1.41e-05 | 0.1816602 | 1.41e-05 | 0.1816602 | -0.0536620 | 0.0355227 | 0.0000735 | FALSE | 2.8948840 | |||||||||||||||
| cg19435409 | chr6 | 27833121 |
|
75677583 | ATAAAACTCTAATAAACTTCTCTCRACTATTCTCAATTCCTCCATTTATC | II | NA | NA | NA | NA | NA | NA | chr6:27833120-27833406 | Island | GACTATAAGTAGTGGAGCTCTGGTGAACTTCTCTCGGCTGTTCTCAGTTCCTCCATTTAT[CG]TTTCTTCGTCATGTCGGGACGCGGCAAGCAGGGAGGCAAAGCTCGCGCCAAAGCCAAGAC | TGGAGCTCTGGTGAACTTCTCTCGGCTGTTCTCAGTTCCTCCATTTATCG | HIST1H2AL;HIST1H2AL | NM_003511;NM_003511 | 1stExon;5’UTR | 6:27941100-27941421 | 6:27832701-27833285 | Promoter_Associated | HIST1H2AL;HIST1H2AL | ENST00000357320.2;ENST00000357320.2 | 5’UTR;1stExon | HIST1H2AL;HIST1H2AL | ENST00000357320.2;ENST00000357320.2 | 5’UTR;1stExon | chr6:27832760-27833590 | 3 | TRUE | TRUE | 1.42e-05 | 0.1816602 | 1.42e-05 | 0.1816602 | 0.0500566 | 0.0309570 | 0.0000641 | FALSE | -4.9632076 | |||||||||||||
| cg24982343 | chr1 | 158369334 |
|
8788449 | 18610533 | AAAAAAAACAAAATAATAACTATCTTTATAATACAAACATTTTCCCAACA | AAAAAAAACAAAATAATAACTATCTTTATAATACGAACATTTTCCCAACG | I | C | Grn | rs6696357 | 0.339794 | NA | NA | NA | NA | OpenSea | GTGAATGTGTTTGAAAGAGACAAAATGATAACTATCTTTGTAATACGAACATTTTCCCAA[CG]CCTTCACTTTAAGTATATTGTCAGATTCATAATGTTAACATCTCTTTCTCTTAGTCTATC | GAAAGAGACAAAATGATAACTATCTTTGTAATACGAACATTTTCCCAACG | OR10T2 | NM_001004475 | TSS200 | OR10T2 | ENST00000334438.1 | TSS200 | OR10T2 | ENST00000334438.1 | TSS200 | 1.48e-05 | 0.1816602 | 1.48e-05 | 0.1816602 | -0.0720708 | 0.0646015 | 0.0001337 | FALSE | -0.7340371 | |||||||||||||||||
| cg07599644 | chr11 | 33693866 |
|
92704199 | TCAAATCCTCAAAAATTTACCTTAAACATCACAAAAATACTAATCAAAAC | II | rs116521459 | 0.012163 | NA | NA | NA | NA | OpenSea | CTGAAAAATCCACCCCTCAAGAACCCACTCCACACAACCTTTCCTTTTCAGTACCCACCA[CG]CTCTGACTAGCATCTCTGTGATGCCTAAGGCAAATTTTTGAGGATCTGATTGGTTTAGTT | CGCTCTGACTAGCATCTCTGTGATGCCTAAGGCAAATTTTTGAGGATCTG | C11orf41 | NM_012194 | 3’UTR | C11orf41;RP4-541C22.5 | ENST00000321505.4;ENST00000534431.1 | 3’UTR;3’UTR | C11orf41;RP4-541C22.5 | ENST00000321505.4;ENST00000534431.1 | 3’UTR;3’UTR | chr11:33693805-33694055 | 3 | TRUE | TRUE | 1.48e-05 | 0.1816602 | 1.48e-05 | 0.1816602 | -0.0452801 | 0.0255002 | 0.0000528 | FALSE | 2.9222434 | |||||||||||||||||
| cg02715072 | chr6 | 32058676 |
|
83623433 | CACTAAAAAAACCAAACATCATCAAAAAACATCCAAAATATATATATTAC | II | NA | NA | rs115461385 | 0.046617 | rs115461385 | 0.046617 | chr6:32055067-32055601 | S_Shelf | TTTTCTCTGTGTGTGTGTATGTCTCTTTCTCTTTATCCACACCCACCCCATCCCCACAGC[CG]CAATACACACACCTTGGATGCTCCCTGATGATGTCTGGTTCTTTCAGTGAGGCAAGCCTA | ACTGAAAGAACCAGACATCATCAGGGAGCATCCAAGGTGTGTGTATTGCG | TNXB | NM_019105 | Body | TRUE | 1.49e-05 | 0.1816602 | 1.49e-05 | 0.1816602 | 0.1139750 | 0.1618351 | 0.0003349 | FALSE | 2.8936439 | |||||||||||||||||||||||||
| cg11002208 | chr2 | 241562650 |
|
3691942 | ACCCTATTTAATTTTATCACAAAACTTATTTTTTAAATAACCCTTTCTAC | II | NA | NA | NA | NA | NA | NA | chr2:241562469-241562910 | Island | CTGTGCCAGGGCCCCGACAGGGCAGGAAGCAGATAGAGTCCCACAAGCACAAGCCCAGTG[CG]CAGAAAGGGTTACTTAAAAAATAAGTTCTGTGATAAAATCAAACAGGGTGAAGGGCTGGA | CCCTGTTTGATTTTATCACAGAACTTATTTTTTAAGTAACCCTTTCTGCG | 2:241562300-241562795 | Unclassified_Cell_type_specific | GPR35;GPR35 | ENST00000319838.5;ENST00000403859.1 | 5’UTR;5’UTR | GPR35;GPR35 | ENST00000319838.5;ENST00000403859.1 | 5’UTR;5’UTR | chr2:241562440-241562710 | 3 | TRUE | 1.50e-05 | 0.1816602 | 1.50e-05 | 0.1816602 | 0.0568792 | 0.0403418 | 0.0000835 | FALSE | -2.8317597 | ||||||||||||||||||
| cg07941628 | chr10 | 115510107 |
|
46661854 | ATCCTAACATCTCTCAACTTCTAAAAAAACCTCAAAAAACTTTCTTTTAC | II | NA | NA | rs11196468 | 0.140654 | rs11196468 | 0.140654 | OpenSea | CAGGAAGCATAGTCCTGGCATCTCTCAGCTTCTGAGAAGACCTCAGGGGGCTTTCTTTTA[CG]CATGGTGGAAGGTGAGGCGGGAGTAGCCATGTCACCTGGTGGGAGTGGGAGCAGTAGAGT | TCCTGGCATCTCTCAGCTTCTGAGAAGACCTCAGGGGGCTTTCTTTTACG | C10orf81 | NM_024889 | TSS1500 | C10orf81;C10orf81 | ENST00000361048.1;ENST00000369312.4 | TSS1500;TSS1500 | C10orf81;C10orf81 | ENST00000361048.1;ENST00000369312.4 | TSS1500;TSS1500 | TRUE | 1.55e-05 | 0.1816602 | 1.55e-05 | 0.1816602 | 0.0693410 | 0.0603009 | 0.0001248 | FALSE | 2.3905545 | ||||||||||||||||||||
| cg01458105 | chr10 | 134045514 |
|
78638937 | CTATTATTTACAAACACTAAACTACRAAACTTAATTATAACRAAAAACTC | II | NA | NA | NA | NA | NA | NA | chr10:134041499-134041784 | S_Shelf | AAGAGAAACTTCTGTTGTTTGCAGACACTGAGCTACGGAACTTGGTTGTGGCGGGAAACT[CG]CTTTCTCCACGCCTCCTGTGTCTCTGCATCCCTGATAACACCCTGCAGACTCTGAGCACC | TGTTGTTTGCAGACACTGAGCTACGGAACTTGGTTGTGGCGGGAAACTCG | STK32C | NM_173575 | Body | 10:133895479-133895620 | STK32C;STK32C | ENST00000478542.1;ENST00000368622.1 | 3’UTR;5’UTR | STK32C;STK32C | ENST00000478542.1;ENST00000368622.1 | 3’UTR;5’UTR | chr10:134042903-134048670 | 6 | chr10:134045514-134046554 | 6 | TRUE | 1.56e-05 | 0.1816602 | 1.56e-05 | 0.1816602 | -0.1024302 | 0.1317053 | 0.0002726 | FALSE | 0.0655523 | ||||||||||||||
| cg07383950 | chr15 | 78832523 |
|
58784955 | AATAACCAACCAAAAAATAAAATAACTAATTTCTTTCTCTTACCCTTAAC | II | NA | NA | NA | NA | NA | NA | chr15:78832664-78833295 | N_Shore | AGCCGGTCCACACTATTTGCTATCCTAGGTCTGAATAGTGAAGAGAAAATGAAAGGAGAG[CG]CCAAGGGTAAGAGAAAGAAATTAGCTATTCCACCTCCTGGTTGGCTACTGTCTTCCTGCC | CGCCAAGGGTAAGAGAAAGAAATTAGCTATTCCACCTCCTGGTTGGCTAC | PSMA4;PSMA4;PSMA4 | NM_001102667;NM_002789;NM_001102668 | TSS1500;TSS1500;TSS1500 | 15:78832288-78834180 | Unclassified | PSMA4;PSMA4;PSMA4;PSMA4;PSMA4;PSMA4;PSMA4 | ENST00000560217.1;ENST00000044462.7;ENST00000559082.1;ENST00000413382.2;ENST00000557929.1;ENST00000558281.1;ENST00000558341.1 | TSS1500;TSS1500;TSS1500;TSS1500;TSS1500;TSS1500;TSS1500 | PSMA4;PSMA4;PSMA4;PSMA4;PSMA4;PSMA4;PSMA4;PSMA4;PSMA4;PSMA4;PSMA4;PSMA4;PSMA4;PSMA4 | ENST00000560217.1;ENST00000044462.7;ENST00000559082.1;ENST00000560033.1;ENST00000559146.1;ENST00000558639.1;ENST00000558635.1;ENST00000560099.1;ENST00000557929.1;ENST00000558281.1;ENST00000559365.1;ENST00000558341.1;ENST00000559437.1;ENST00000560842.1 | TSS1500;TSS1500;TSS1500;TSS1500;TSS1500;TSS1500;TSS1500;TSS1500;TSS1500;TSS1500;TSS1500;TSS1500;TSS1500;TSS1500 | chr15:78832305-78833735 | 3 | TRUE | 1.57e-05 | 0.1816602 | 1.57e-05 | 0.1816602 | 0.0452085 | 0.0256953 | 0.0000532 | FALSE | -4.7572656 | |||||||||||||||
| cg10999462 | chr3 | 147016795 |
|
81702373 | AATTATAAATATCTCCCTATAAATCTATACTAACCRTACCATTACTCRAC | II | NA | NA | rs6768571 | 0.315801 | rs6768571 | 0.315801 | OpenSea | TTCCACTTTCTGGTTGTGAATATCTCCCTGTGAGTCTATGCTAACCGTGCCATTGCTCGG[CG]TTTATACTTATCCACATTTGTATGATAAATACACAATGAAATGACTGAGAGGGCCATATC | CGCCGAGCAATGGCACGGTTAGCATAGACTCACAGGGAGATATTCACAAC | TRUE | RP11-649A16.1 | ENST00000473299.1 | 3’UTR | RP11-649A16.1 | ENST00000473299.1 | 3’UTR | chr3:147016301-147016819 | 4 | chr3:147016027-147016813 | 6 | 1.61e-05 | 0.1816602 | 1.61e-05 | 0.1816602 | 0.3298427 | 1.3743496 | 0.0028443 | FALSE | -0.5105666 | |||||||||||||||||||
| cg23012310 | chr14 | 102050627 |
|
16717521 | 78749859 | AAATATTTCTCCTAAAAAACACAAATACTAATTTACACCACCTCTACCCA | AAATATTTCTCCTAAAAAACGCGAATACTAATTTACGCCACCTCTACCCG | I | C | Grn | NA | NA | NA | NA | NA | NA | chr14:102050814-102051025 | N_Shore | GACTCCATCTGTGCAGCAAAACCCTTTCTCCCCGGAGGCTGGAGGGCGGGGCCGACGGGG[CG]GGCAGAGGTGGCGCAAACCAGCACCCGCGTTCCCCAGGAGAAACATTTTTATCGCTTCCG | AAATGTTTCTCCTGGGGAACGCGGGTGCTGGTTTGCGCCACCTCTGCCCG | 14:101120126-101120800 | chr14:102050465-102051195 | 3 | TRUE | 1.64e-05 | 0.1816602 | 1.64e-05 | 0.1816602 | -0.0744325 | 0.0701917 | 0.0001453 | FALSE | 1.8378793 | |||||||||||||||||||||
| cg12284872 | chr1 | 205311965 |
|
59737937 | AAAACRCTCAATAAAAACCAAAATATTCCTAAAAATTCATATCTAACCRC | II | NA | NA | NA | NA | NA | NA | chr1:205312493-205313576 | N_Shore | GAAAATGAGAATCACAAAACCATGTAGTGAGGACATGCATGCCCTGAGGACTTAGTGAAA[CG]CGGCCAGACATGAACCCTCAGGAACATTCTGGTCTCCACTGAGCGTCTCTGAGATTGGGA | CGCGGCCAGACATGAACCCTCAGGAACATTCTGGTCTCCACTGAGCGTCT | KLHDC8A;KLHDC8A;KLHDC8A;KLHDC8A | NM_018203;NM_001271865;NM_001271864;NM_001271863 | Body;Body;Body;Body | KLHDC8A | ENST00000460687.1 | 3’UTR | KLHDC8A | ENST00000460687.1 | 3’UTR | 1.68e-05 | 0.1816602 | 1.68e-05 | 0.1816602 | 0.2084473 | 0.5529181 | 0.0011443 | FALSE | 0.6472047 | ||||||||||||||||||||
| cg24768164 | chr12 | 121163261 |
|
78607550 | ATAACTTAAAAAACCAAAACCTACCTTATCTATCAAAACCCATACCCACC | II | NA | NA | rs3021337 | 0.255018 | rs3021337 | 0.255018 | chr12:121163472-121163913 | N_Shore | ACCAGCTAAGGGTCTTAGAGAAGAGCTGCCTCGTAAAGCTAAGCAACAATAACCAGGGAA[CG]GTGGGCATGGGCCCTGATAGACAAGGCAGGTCTTGGCTTTTTAAGCCATAGAATTGGATT | CGGTGGGCATGGGCCCTGATAGACAAGGCAGGTCTTGGCTTTTTAAGCCA | ACADS | NM_000017 | TSS1500 | TRUE | 12:121163086-121164377 | Promoter_Associated | ACADS;ACADS | ENST00000242592.4;ENST00000411593.2 | TSS1500;TSS1500 | ACADS;ACADS;ACADS | ENST00000242592.4;ENST00000539690.1;ENST00000411593.2 | TSS1500;TSS1500;TSS1500 | chr12:121163005-121163375 | 3 | TRUE | 1.69e-05 | 0.1816602 | 1.69e-05 | 0.1816602 | 0.0808470 | 0.0832846 | 0.0001724 | FALSE | -3.5356975 | ||||||||||||||
| cg17899674 | chr2 | 225749325 |
|
81690203 | TCCAAATAAAATCTATAAAATTATTCTACTTCCCTTTACCACAATAACCC | II | NA | NA | rs6751295 | 0.192511 | rs6751295 | 0.192511 | OpenSea | AAAGCCAAATGTCCAAATGGGGTCTATGGAATTATTCTGCTTCCCTTTGCCACAGTGGCC[CG]TGCTGAATTTCATACTAAGGACAATAATTTGAAGACCAAGAGCTTATAGAGAACATTATT | CGGGCCACTGTGGCAAAGGGAAGCAGAATAATTCCATAGACCCCATTTGG | DOCK10;DOCK10 | NM_001290263;NM_014689 | Body;Body | TRUE | DOCK10;DOCK10 | ENST00000543715.1;ENST00000492369.1 | 3’UTR;3’UTR | chr2:225748048-225749657 | 6 | 1.76e-05 | 0.1816602 | 1.76e-05 | 0.1816602 | 0.0789409 | 0.0799428 | 0.0001654 | FALSE | 0.2909857 | |||||||||||||||||||||
| cg06091288 | chr10 | 97118046 |
|
39692230 | ATCAACTACTTCAAATCCACTACCTAAATTATTTTTCTTAATTATTCTTC | II | NA | NA | rs6583996 | 0.264731 | rs6583996 | 0.264731 | OpenSea | AGCCAGGCAGTGTCAGCTACTTCAAGTCCACTACCTGGATTATTTTTCTTGGTTATTCTT[CG]TAAGCATTTGGAATATAAAATCATCAATGAAAGGGGGAAGCCCAACTGTCTTGGGTCTCC | CGAAGAATAACCAAGAAAAATAATCCAGGTAGTGGACTTGAAGTAGCTGA | SORBS1;SORBS1;SORBS1;SORBS1;SORBS1;SORBS1;SORBS1;SORBS1;SORBS1;SORBS1;SORBS1;SORBS1 | NM_001034954;NM_001034957;NM_001034955;NM_001290296;NM_001034956;NM_001290298;NM_001290297;NM_006434;NM_024991;NM_015385;NM_001290295;NM_001290294 | Body;Body;Body;Body;Body;Body;Body;Body;Body;Body;Body;Body | RP11-476E15.3 | ENST00000371228.1 | TSS1500 | RP11-476E15.3 | ENST00000371228.1 | TSS1500 | 1.78e-05 | 0.1816602 | 1.78e-05 | 0.1816602 | 0.3693572 | 1.7543765 | 0.0036307 | FALSE | -1.4824680 | |||||||||||||||||||||
| cg26820411 | chr4 | 174857286 |
|
30692954 | AATTATATACTAATATCTTCTCTCCCAATAATATTTTCTTTCCAAACACC | II | NA | NA | NA | NA | NA | NA | OpenSea | TATATATGTAAGGTTATGTGCTAATATCTTCTCTCCCAGTAGTGTTTTCTTTCCAAACAC[CG]TAAGAAGAGAAGTAGGGGCCAGGGAGAGGCCTTTGGAGCTATCTTTTGAAAACAATGGGA | CGGTGTTTGGAAAGAAAACACTACTGGGAGAGAAGATATTAGCACATAAC | TRUE | RP11-161D15.3 | ENST00000511291.1 | 3’UTR | RP11-161D15.3 | ENST00000511291.1 | 3’UTR | chr4:174856940-174857315 | 3 | 1.79e-05 | 0.1816602 | 1.79e-05 | 0.1816602 | -0.0476101 | 0.0291610 | 0.0000603 | FALSE | 2.4711815 | |||||||||||||||||||||
| cg12688121 | chr20 | 21379188 |
|
9779143 | TTCCAAAAAAACTACAATTTTCACCTAATTTCTACATCCATTTTCATATC | II | rs114672017 | 0.010860 | NA | NA | NA | NA | chr20:21376358-21378245 | S_Shore | ATTTCTAGTTGTTCGCAACGGGTCTTTTTGTTGTTGTTGGAAAAATATAACCTGTTCAAG[CG]ATATGAAAATGGATGCAGAAATCAGGTGAAAATTGTAGTTTCTTTGGAAAAATACAAAAC | TCCAAAGAAACTACAATTTTCACCTGATTTCTGCATCCATTTTCATATCG | NKX2-4 | NM_033176 | TSS1500 | RP11-227D2.3;RP11-227D2.3;NKX2-4 | ENST00000419666.2;ENST00000552439.1;ENST00000351817.4 | TSS1500;5’UTR;TSS1500 | RP11-227D2.3;RP11-227D2.3;NKX2-4 | ENST00000419666.2;ENST00000552439.1;ENST00000351817.4 | TSS1500;5’UTR;TSS1500 | chr20:21379180-21379615 | 3 | 1.79e-05 | 0.1816602 | 1.79e-05 | 0.1816602 | 0.0676962 | 0.0589712 | 0.0001220 | FALSE | -0.3254463 | ||||||||||||||||||
| cg06019018 | chr11 | 577391 |
|
3761395 | ACTTTACTTATTTCRACAACAACAAAACAACAATCAACTAAATAAACCAC | II | rs11246195 | 0.057912 | NA | NA | NA | NA | chr11:575464-577093 | S_Shore | GGAGTTTATGTGCTTTACTTGTTTCGACAACAGCAGAACAGCAGTCAGCTGGGTGAACCA[CG]TTCTGGCCAGTGGTCAATGGACAGGCTCTGAGGCCGAGCTGAGGTTTGACTTCGGGTTTG | CGTGGTTCACCCAGCTGACTGCTGTTCTGCTGTTGTCGAAACAAGTAAAG | PHRF1;PHRF1;PHRF1;PHRF1 | NM_001286581;NM_020901;NM_001286583;NM_001286582 | 5’UTR;5’UTR;5’UTR;5’UTR | 11:577228-577563 | NonGene_Associated | PHRF1;PHRF1 | ENST00000264555.5;ENST00000413872.2 | 5’UTR;5’UTR | PHRF1;PHRF1;PHRF1 | ENST00000534320.1;ENST00000413872.2;ENST00000526724.1 | 5’UTR;5’UTR;5’UTR | chr11:576900-577575 | 3 | 1.80e-05 | 0.1816602 | 1.80e-05 | 0.1816602 | 0.0452496 | 0.0263683 | 0.0000546 | FALSE | -4.4793087 | ||||||||||||||||
| cg10460708 | chr17 | 59246174 |
|
3640358 | TTCTATTACTCTAAAACACATTTAAAATAAACATAAATCATTCCAAAACC | II | NA | NA | rs78244602 | 0.013032 | rs78244602 | 0.013032 | OpenSea | TGAAGGCTTATAGTCATTGCAAATATAACTGCTTATACCTTATGTTATCATTATATAGTA[CG]GTTTTGGAATGACTTATGTTCACCTCAAATGTGTCCTAGAGTAACAGAAGGATGCTGAAA | CGGTTTTGGAATGACTTATGTTCACCTCAAATGTGTCCTAGAGTAACAGA | BCAS3;BCAS3 | NM_001099432;NM_017679 | Body;Body | chr17:59245940-59246215 | 3 | 1.90e-05 | 0.1816602 | 1.90e-05 | 0.1816602 | -0.0483495 | 0.0304113 | 0.0000629 | FALSE | 3.2246170 | |||||||||||||||||||||||||
| cg26743692 | chr11 | 60105953 |
|
82662905 | AAAATATCACACTTCTTTCAACTATAACAAAAAACAATAATAATATTACC | II | NA | NA | NA | NA | NA | NA | OpenSea | GTTAGATGGTAAGGGTTTCTCCTAATGATTACAATAATGAATAATACTAATCAGGTGAAA[CG]GTAACATTATTATTGCTTTTTGTTATAGCTGAAAGAAGTGTGATATCTTAAATCAGGAGA | CGGTAACATTATTATTGCTTTTTGTTATAGCTGAAAGAAGTGTGATATCT | MS4A6E | NM_139249 | Body | MS4A6E | ENST00000530509.1 | 3’UTR | chr11:60105477-60106055 | 6 | 1.95e-05 | 0.1816602 | 1.95e-05 | 0.1816602 | -0.0563798 | 0.0415415 | 0.0000860 | FALSE | 2.8627622 | ||||||||||||||||||||||
| cg12921769 | chr2 | 73368662 |
|
86607842 | TACAAAAAACCACATTAAAAACCATCCCTAAAATACCAAAAAACAAAACC | II | NA | NA | rs10048837 | 0.096870 | rs10048837 | 0.096870 | OpenSea | AACAATTTGTTTTATATATTAGGTTAAACCATTTGAAATTACTCCATTGACCTTTGAATG[CG]GCCTTGTTTTCTGGCACTCCAGGGATGGTTTTCAATGTGGTTCTTTGTAAGGCAAGCATT | CGGCCTTGTTTTCTGGCACTCCAGGGATGGTTTTCAATGTGGTTCTTTGT | RAB11FIP5 | ENST00000475951.1 | 3’UTR | 1.95e-05 | 0.1816602 | 1.95e-05 | 0.1816602 | 0.1592435 | 0.3315405 | 0.0006861 | FALSE | 1.3648746 | |||||||||||||||||||||||||||
| cg20007063 | chr5 | 1326407 |
|
23625196 | CRACACTATAACTCRTACCTATAAAAAAACCCTACCTATAAAACTCCAAC | II | NA | NA | rs148759334 | 0.012800 | rs148759334 | 0.012800 | OpenSea | AGAGCCGGGCACGGCACTGTGACTCGTACCTATGGAGGGACCCTGCCTGTGGAGCTCCAG[CG]TCATTTCATCCAGCTCCTCCTCTACAGGGACATTCCATCCAGCTCCTCCTCTACAGACAC | CGCTGGAGCTCCACAGGCAGGGTCCCTCCATAGGTACGAGTCACAGTGCC | CLPTM1L | NM_030782 | Body | CLPTM1L | ENST00000506641.1 | TSS200 | CLPTM1L;CLPTM1L;CLPTM1L;CLPTM1L;CLPTM1L;CLPTM1L;CLPTM1L;CLPTM1L;CLPTM1L | ENST00000507195.1;ENST00000505605.1;ENST00000506641.1;ENST00000507195.1;ENST00000503042.1;ENST00000503151.1;ENST00000508765.1;ENST00000513250.1;ENST00000503534.1 | 3’UTR;TSS1500;TSS200;1stExon;3’UTR;3’UTR;3’UTR;3’UTR;TSS1500 | chr5:1326065-1326935 | 3 | 1.97e-05 | 0.1816602 | 1.97e-05 | 0.1816602 | 0.1089395 | 0.1553495 | 0.0003215 | FALSE | 3.0430145 | |||||||||||||||||||
| cg10185505 | chr1 | 150335496 |
|
8612254 | TTCTTTCRAAAAAACTTCCTAATTCACCATACCACCATTCTTATACTAAC | II | NA | NA | NA | NA | NA | NA | chr1:150336831-150337289 | N_Shore | GATCGAGTTATTTCTTTCGAGAAGACTTCCTGGTTCACCATACCACCATTCTTATACTGG[CG]CGTGCGTGCCGTGCACACGTACACACACGCGCGCACACACACACACCCCTTTCTCCCTTA | TCTTTCGAGAAGACTTCCTGGTTCACCATACCACCATTCTTATACTGGCG | RPRD2;RPRD2;RPRD2 | NM_001297673;NM_001297674;NM_015203 | TSS1500;TSS1500;TSS1500 | 1:148602120-148602154 | RPRD2 | ENST00000492220.1 | TSS200 | RPRD2 | ENST00000492220.1 | TSS200 | chr1:150335345-150335690 | 3 | 2.04e-05 | 0.1816602 | 2.04e-05 | 0.1816602 | 0.0973645 | 0.1249064 | 0.0002585 | FALSE | 3.0357141 | |||||||||||||||||
| cg16670864 | chr17 | 35848621 |
|
91748431 | AAATTCAAATCRTACCTAAAAAAAACATCTTCCTAAAACTAAATTATAAC | II | rs853196 | 0.292507 | NA | NA | NA | NA | chr17:35849290-35850483 | N_Shore | TGTTAGAGATTTGCTCTTTTCGTATTGGCATGTAAACAAGTAAGTCACTAAGTGAACTGA[CG]TCACAATTTAGTTTTAGGAAGATGCTTTTCCCAGGCACGATTTGAACTCAGTGGTTTCCT | AGTTCAAATCGTGCCTGGGAAAAGCATCTTCCTAAAACTAAATTGTGACG | DUSP14 | NM_007026 | TSS1500 | 17:35848352-35848676 | Unclassified_Cell_type_specific | DUSP14 | ENST00000394389.4 | TSS1500 | DUSP14 | ENST00000394389.4 | TSS1500 | chr17:35848082-35851781 | 6 | chr17:35847462-35852256 | 6 | TRUE | 2.06e-05 | 0.1816602 | 2.06e-05 | 0.1816602 | 0.0576711 | 0.0439047 | 0.0000909 | FALSE | -3.5147201 | |||||||||||||
| cg12188187 | chr20 | 8583715 |
|
75698508 | ACATTTATCCTATTTATCATACACCRTAAACCTTTCATTTTCTATATTTC | II | NA | NA | NA | NA | NA | NA | OpenSea | TCATTGTTAAAGTATCACATGGTTTGTACAGCAGGATGATTTGCATTATATGAAGGACAC[CG]AAACACAGAAAATGAAAGGTCTACGGTGTATGACAAACAGGACAAATGCTCTAGCAAAAA | CATTTGTCCTGTTTGTCATACACCGTAGACCTTTCATTTTCTGTGTTTCG | PLCB1;PLCB1 | NM_182734;NM_015192 | Body;Body | chr20:8582965-8583795 | 3 | 2.07e-05 | 0.1816602 | 2.07e-05 | 0.1816602 | 0.0600997 | 0.0477370 | 0.0000988 | FALSE | -1.9194942 | |||||||||||||||||||||||||
| cg25181941 | chr17 | 40805728 |
|
86755107 | CRCTTTCCAATCCCCAAAATCCTCTAAACTTCTTAAAAAATCTCTAACTC | II | rs4792929 | 0.467757 | NA | NA | NA | NA | chr17:40805674-40805957 | Island | GGCTCTGCGGGGTGCGGGGAGGGAAACTGAGCCGAGGCCGGGTAGAGGGCGGGCGTGGGG[CG]AGCCAGAGACTTCTCAAGAAGCCCAGAGGATTCTGGGGACTGGAAAGCGGCCGAGTTCTT | GCTTTCCAGTCCCCAGAATCCTCTGGGCTTCTTGAGAAGTCTCTGGCTCG | chr17:40805539-40805539 | TRUE | 17:38059201-38059255 | chr17:40805340-40806110 | 3 | TRUE | 2.08e-05 | 0.1816602 | 2.08e-05 | 0.1816602 | 0.0486038 | 0.0312386 | 0.0000646 | FALSE | -3.0407295 | |||||||||||||||||||||||
| cg18570331 | chr11 | 60101691 |
|
90758553 | TTACTTATTTCTTATCTAAAACCTATAACCTCTTTCTCCCCCTAATATCC | II | rs76529372 | 0.376706 | NA | NA | NA | NA | OpenSea | GCCTCTGAGAACAAAGGCAAGCACCCTGTTTCAGCACTAGGGAGATTGTAGTACTGAAGG[CG]GACACCAGGGGGAGAAAGAGGTTACAGGCTCCAGACAAGAAACAAGCAAACCTCTTTAAC | TGCTTGTTTCTTGTCTGGAGCCTGTAACCTCTTTCTCCCCCTGGTGTCCG | MS4A6E | NM_139249 | TSS1500 | 11:60101141-60101953 | Unclassified | MS4A6E | ENST00000300182.4 | TSS1500 | MS4A6E;MS4A6E;MS4A6E | ENST00000300182.4;ENST00000532756.1;ENST00000530509.1 | TSS1500;TSS1500;TSS1500 | chr11:60101540-60101795 | 3 | TRUE | 2.13e-05 | 0.1816602 | 2.13e-05 | 0.1816602 | 0.0592576 | 0.0466504 | 0.0000965 | FALSE | -2.5097401 | ||||||||||||||||
| cg04656402 | chr1 | 41888415 |
|
14629527 | ATTATATCATAAATCAAAATTCTATATTCACAAAACCCTTAATAACCCAC | II | NA | NA | rs75267114 | 0.021267 | rs75267114 | 0.021267 | chr1:41889270-41889626 | N_Shore | TTAGTGATGGAATTGTGTCATGGATCAGGATTCTGTATTCACAGGGCCCTTAATGGCCCA[CG]TTGCCCTGAATGAGTCCCCTGCTGTCTTGTCTGACTTCTCCTCTGGGTGAAGTCTACGGG | CGTGGGCCATTAAGGGCCCTGTGAATACAGAATCCTGATCCATGACACAA | chr1:41888325-41888635 | 3 | 2.19e-05 | 0.1816602 | 2.19e-05 | 0.1816602 | 0.0640872 | 0.0548281 | 0.0001135 | FALSE | 1.5899966 | |||||||||||||||||||||||||||
| cg01538982 | chr3 | 48481510 |
|
81621443 | ATACTAACAAATCAAAAATCAACTAAATAACAAACRATTAATCRAACCAC | II | NA | NA | NA | NA | NA | NA | chr3:48481414-48481805 | Island | GTACCCCTCCTACGGTTCCGATTCTACCCTGGCAGGACAACCCTAGCTCCTCGTACCTGG[CG]TGGCCCGACCAATCGTCTGCCACTCAGTTGACCTCTGACCTGTTAGTACCCGCCCCTGGA | TACTAACAGGTCAGAGGTCAACTGAGTGGCAGACGATTGGTCGGGCCACG | CCDC51;CCDC51;CCDC72 | NM_024661;NM_024661;NM_015933 | 5’UTR;1stExon;TSS200 | 3:48456417-48457228 | 3:48481186-48482222 | Promoter_Associated | CCDC72;CCDC51;CCDC51;CCDC51;CCDC51;CCDC51;CCDC51 | ENST00000438607.2;ENST00000395694.2;ENST00000447018.1;ENST00000395696.1;ENST00000442740.1;ENST00000412398.2;ENST00000395696.1 | TSS200;TSS200;TSS200;1stExon;TSS200;5’UTR;5’UTR | CCDC72;CCDC51;CCDC51;CCDC72;CCDC51;CCDC51;CCDC51;CCDC51;CCDC51;CCDC51 | ENST00000479126.1;ENST00000395694.2;ENST00000447018.1;ENST00000477624.1;ENST00000412398.2;ENST00000438370.1;ENST00000442740.1;ENST00000412398.2;ENST00000395696.1;ENST00000438370.1 | TSS200;TSS200;TSS200;TSS200;1stExon;1stExon;TSS200;5’UTR;5’UTR;5’UTR | chr3:48481445-48481735 | 3 | TRUE | TRUE | 2.19e-05 | 0.1816602 | 2.19e-05 | 0.1816602 | 0.0441513 | 0.0260250 | 0.0000539 | FALSE | -4.9963270 | |||||||||||||
| cg19614135 | chr6 | 36098504 |
|
80611549 | 74732875 | AACAAAACCTATAACTCCATATAATAAAACCCCTAAACCACTAAAAAACA | AACGAAACCTATAACTCCGTATAATAAAACCCCTAAACCGCTAAAAAACG | I | A | Red | rs140374075 | 0.012800 | NA | NA | NA | NA | chr6:36098039-36098621 | Island | ACGCACGTCGGCAGCGGGGCCTATGGCTCCGTGTGGTGAGACCCCTGGGCCGCTGGGGGG[CG]GGGGGCGGGCGCCAGGCTCTCCCCTTTCCGCCCAGCCCGCCCTGGGCTGGCCCCTCGCCA | AGCGGGGCCTATGGCTCCGTGTGGTGAGACCCCTGGGCCGCTGGGGGGCG | MAPK13;MAPK13 | NM_002754;NR_072996 | Body;Body | 6:36206018-36207118 | MAPK13;MAPK13 | ENST00000373759.1;ENST00000490334.1 | 5’UTR;TSS200 | MAPK13;MAPK13;MAPK13 | ENST00000476951.1;ENST00000373759.1;ENST00000490334.1 | 5’UTR;5’UTR;TSS200 | chr6:36097665-36100395 | 3 | 2.20e-05 | 0.1816602 | 2.20e-05 | 0.1816602 | 0.0484039 | 0.0313146 | 0.0000648 | FALSE | -5.1130062 | |||||||||||||
| cg16657759 | chr2 | 69536881 |
|
44644858 | TATTTAATAATCTTCAATCCACAAAAACCTCTTCCCTCTCTTTATATATC | II | rs13398812 | 0.392417 | NA | NA | NA | NA | chr2:69533609-69534775 | S_Shelf | GCCTGAAAACAACCACATGCAATAATAAAACTCTCCCCAGTTCCAAATGGCTTGAACTAG[CG]ACACACAAAGAGAGGGAAGAGGCCCCTGTGGATTGAAGATTATTAAATATGAAGTATGTT | ATTTAATAATCTTCAATCCACAGGGGCCTCTTCCCTCTCTTTGTGTGTCG | chr2:69536265-69537135 | 3 | 2.21e-05 | 0.1816602 | 2.21e-05 | 0.1816602 | -0.0623849 | 0.0520597 | 0.0001077 | FALSE | 3.1688397 | |||||||||||||||||||||||||||
| cg04655655 | chr2 | 141505481 |
|
1706953 | CAATAAACCCRCCCTACRTCCTAAAAATTACATACCTTAAAAATAATCTC | II | NA | NA | NA | NA | NA | NA | OpenSea | CATTGAAATGAGTAAATGACCACATTTTTCAGTATCAGGGGTTATATGTGATTGCAAATG[CG]AGACTATTTTCAAGGTATGCAATTTTCAGGACGTAGGGCGGGTTTATTGTTCCATGCCAC | AATAAACCCGCCCTACGTCCTGAAAATTGCATACCTTGAAAATAGTCTCG | LRP1B | NM_018557 | Body | chr2:141505325-141505555 | 3 | 2.23e-05 | 0.1816602 | 2.23e-05 | 0.1816602 | -0.0501476 | 0.0336717 | 0.0000697 | FALSE | 2.9241767 | |||||||||||||||||||||||||
| cg11568374 | chr2 | 64015338 |
|
10602545 | TATTACAACATTTTATAACTAAAATAACTACACAACCCTTCAAAACACAC | II | NA | NA | NA | NA | NA | NA | OpenSea | CTGTAGCTGTATGTTGCAACATTTTGTAGCTAGAATGACTACACAGCCCTTCAAGACACA[CG]TACAAACAAGTAGTATAATTTTCCAGACCATGATGTTCCAGTACAGTCAAGTACCATAAA | CGTGTGTCTTGAAGGGCTGTGTAGTCATTCTAGCTACAAAATGTTGCAAC | WDPCP;WDPCP | ENST00000490935.1;ENST00000467687.1 | 3’UTR;3’UTR | chr2:64015245-64015475 | 3 | 2.32e-05 | 0.1816602 | 2.32e-05 | 0.1816602 | -0.0478031 | 0.0308346 | 0.0000638 | FALSE | 2.5345142 | |||||||||||||||||||||||||
| cg14282114 | chr9 | 76892545 |
|
85762212 | ACTAAACATCTACCAAACCTCATACTAAATAAAAATCCTAACTCTATTTC | II | NA | NA | NA | NA | NA | NA | OpenSea | GTTGTTTACAGATAGGACTCAGAGAAGTTGGGTGACTTGCCCAAGGTCACACACCAAGGA[CG]AAACAGAGCCAGGATTTCCACCCAGCATGAGGCCTGGCAGATGTTCAGTATTTCACCCAA | CTGAACATCTGCCAGGCCTCATGCTGGGTGGAAATCCTGGCTCTGTTTCG | MIR6130 | NR_106746 | Body | chr9:76892525-76892835 | 3 | 2.35e-05 | 0.1816602 | 2.35e-05 | 0.1816602 | 0.0905678 | 0.1109534 | 0.0002296 | FALSE | -1.7501713 | |||||||||||||||||||||||||
| cg08841027 | chr16 | 85419838 |
|
97670581 | CCCTATTTAAACTCAACATTATAACCAACAAAACTAAACAAAACCCTAAC | II | rs4783191 | 0.200730 | NA | NA | NA | NA | OpenSea | CACGCCCTGCCCCCTGTTTGGGCTCAGCATTGTGGCCAGCAGAGCTGAACAAGGCCCTGA[CG]CCGTGGCAGGTGCCTGGCCCAATGCATCCTGCCTGCGTGCCTGACACCAGGATGGACGGC | CCTGTTTGGGCTCAGCATTGTGGCCAGCAGAGCTGAACAAGGCCCTGACG | chr16:85417966-85419963 | 6 | chr16:85417913-85420155 | 6 | 2.39e-05 | 0.1816602 | 2.39e-05 | 0.1816602 | -0.0471463 | 0.0301602 | 0.0000624 | FALSE | 3.2910230 | ||||||||||||||||||||||||||
| cg26296371 | chr6 | 5442953 |
|
62605224 | TATCAAATTTAATCCCACCCTCRATAACAATTTCCCTTAACTAAAAAATC | II | NA | NA | rs6938112 | 0.377866 | rs6938112 | 0.377866 | OpenSea | TCCTAGTGTTCTGTCAGATTTAGTCCCACCCTCGGTGACAGTTTCCCTTGGCTGGGAAGT[CG]TACTCTAGGATGTGCTTCTTTGACTAGGAAATGTAGCTCAGAGCTTGCCTGGGAGCCCCA | CGACTTCCCAGCCAAGGGAAACTGTCACCGAGGGTGGGACTAAATCTGAC | FARS2 | NM_006567 | Body | TRUE | TRUE | 2.44e-05 | 0.1816602 | 2.44e-05 | 0.1816602 | -0.3259202 | 1.4463493 | 0.0029933 | FALSE | 0.4077556 | |||||||||||||||||||||||||
| cg07572984 | chr14 | 80858152 |
|
56742575 | TCATTTTACACRAAAAAATCAATTAACCAATTTAATCTCATACTCTTAAC | II | NA | NA | rs34016104 | 0.242245 | rs34016104 | 0.242245 | OpenSea | TCTTTGTCTAATGGGACCCAAATTAATAACACATTCTTCTGAACTTGAAGATATCTATAG[CG]TCAAGAGCATGAGACCAAATTGGCCAACTGACTCCCTCGTGTAAAATGAGGCAGTTGGCC | CATTTTACACGAGGGAGTCAGTTGGCCAATTTGGTCTCATGCTCTTGACG | TRUE | CTD-2540C19.1 | ENST00000553979.1 | 5’UTR | CTD-2540C19.1 | ENST00000553979.1 | 5’UTR | TRUE | 2.47e-05 | 0.1816602 | 2.47e-05 | 0.1816602 | -0.3090476 | 1.3029619 | 0.0026965 | FALSE | 0.3577657 | ||||||||||||||||||||||
| cg09375065 | chr6 | 30772293 |
|
2669443 | ACACTTTTCTACAACTACAAAAAATCCAAAACCCTAACTCAAAAAATAAC | II | NA | NA | rs118098373 | 0.037326 | rs118098373 | 0.037326 | OpenSea | CCCCACAGGGAGGTGTTGAAAGAAAGGAGAAGCAAGAGGTGATATTGACCAGGGAAATGG[CG]CCACTTCCTGAGCCAGGGCCCTGGACTTCCTGTAGTTGTAGAAAAGTGCAGGCCTGAGTT | CGCCACTTCCTGAGCCAGGGCCCTGGACTTCCTGTAGTTGTAGAAAAGTG | LINC00243 | ENST00000419357.1 | 3’UTR | chr6:30772140-30772450 | 3 | TRUE | 2.49e-05 | 0.1816602 | 2.49e-05 | 0.1816602 | 0.0701911 | 0.0673211 | 0.0001393 | FALSE | 0.6536403 | ||||||||||||||||||||||||
| cg01939428 | chr7 | 156931170 |
|
85682431 | AAAACAAATAAAATATAAACAAACRAACTAAACCTAACTACTCCTTTCCC | II | rs115360670 | 0.017811 | NA | NA | NA | NA | chr7:156931422-156932075 | N_Shore | GTCATAGACATAGAACAGGTGGGATGTAAACAGACGGGCTGGGCCTAGCTGCTCCTTTCC[CG]CCTCACTCGAGTCTGGCACCAGATTGGCCGCTCCCAGCCCGCTCCGGGTGCCGGCCCCTG | GAACAGGTGGGATGTAAACAGACGGGCTGGGCCTAGCTGCTCCTTTCCCG | UBE3C | NM_014671 | TSS1500 | 7:156623905-156625433 | UBE3C;UBE3C | ENST00000348165.5;ENST00000389103.4 | TSS1500;TSS1500 | UBE3C;UBE3C;UBE3C | ENST00000348165.5;ENST00000389103.4;ENST00000430750.1 | TSS1500;TSS1500;TSS1500 | chr7:156931020-156931275 | 3 | TRUE | TRUE | 2.49e-05 | 0.1816602 | 2.49e-05 | 0.1816602 | -0.0527358 | 0.0380020 | 0.0000786 | FALSE | -1.2033125 | |||||||||||||||
| cg07012999 | chr22 | 46692446 |
|
11762121 | ATATCRATAAAAAAACTAAAAATAAACTCACCCACCTACTATAAAACAAC | II | NA | NA | NA | NA | NA | NA | chr22:46692210-46693349 | Island | AGTGCGTGCCTCGGGGGCAGGGATCCCGGCTTTTCACTACTGTTAGTAACAGCTCGCGCG[CG]CTGCTTCACAGCAGGTGGGTGAGCCTACTTTTAGTCTTCCCATCGACACCCTTAGATGGC | TGTCGATGGGAAGACTAAAAGTAGGCTCACCCACCTGCTGTGAAGCAGCG | CN5H6.4;GTSE1 | NR_024009;NM_016426 | Body;TSS200 | 22:45070875-45072062 | 22:46692041-46693282 | Promoter_Associated | GTSE1;GTSE1 | ENST00000361934.5;ENST00000454366.1 | TSS1500;TSS200 | GTSE1;GTSE1 | ENST00000361934.5;ENST00000454366.1 | TSS1500;TSS200 | chr22:46692085-46692455 | 3 | TRUE | 2.50e-05 | 0.1816602 | 2.50e-05 | 0.1816602 | 0.0778864 | 0.0829580 | 0.0001717 | FALSE | -4.1048488 | ||||||||||||||
| cg02015529 | chr13 | 100153203 |
|
7723851 | ACTACCCAATACAAAAATACACCACTACATCCAATACTTAAAAATTATCC | II | NA | NA | NA | NA | NA | NA | chr13:100153365-100154138 | N_Shore | TGCACACAATCACTGCCCAATGCAAGAATGCACCACTGCATCCAATGCTTGGAAATTGTC[CG]TGAAGATGCCTTTGAGTAGCTGTCTATTTGAGGATTTGTGGCTAATTCCTCCCCATTTGT | CGGACAATTTCCAAGCATTGGATGCAGTGGTGCATTCTTGCATTGGGCAG | TM9SF2 | NM_004800 | TSS1500 | 13:100153158-100154607 | Unclassified | LINC00449;TM9SF2;LINC00449 | ENST00000366259.2;ENST00000376387.3;ENST00000366259.2 | 3’UTR;TSS1500;1stExon | LINC00449;TM9SF2;TM9SF2;LINC00449 | ENST00000366259.2;ENST00000376387.3;ENST00000463123.1;ENST00000366259.2 | 3’UTR;TSS1500;TSS1500;1stExon | chr13:100153160-100153415 | 3 | TRUE | 2.54e-05 | 0.1816602 | 2.54e-05 | 0.1816602 | 0.0498727 | 0.0341062 | 0.0000706 | FALSE | -4.7033342 | |||||||||||||||
| cg02418195 | chr12 | 52799285 |
|
15635135 | CCTCACCTTCAAACTCAAAAATTATAACACAACTCAAACACACAAAAAAC | II | NA | NA | rs73097123 | 0.085087 | rs73097123 | 0.085087 | OpenSea | ACAGTGTCCATCCTCACCTTCAGGCTCAAGAGTTGTGACACAGCTCAGGCACACAGAAGG[CG]GTTCTACTGTTAAAGCCTCATCAGGAAGGGCATTTCTCTGCCTCTCTGGTCATTCCTTTC | CGCCTTCTGTGTGCCTGAGCTGTGTCACAACTCTTGAGCCTGAAGGTGAG | KRT82 | NM_033033 | Body | chr12:52799125-52799435 | 3 | TRUE | 2.56e-05 | 0.1816602 | 2.56e-05 | 0.1816602 | 0.1151201 | 0.1819878 | 0.0003766 | FALSE | 1.8888873 | ||||||||||||||||||||||||
| cg11892366 | chr5 | 25090986 |
|
32801110 | CACTATATCCATAACTTACTTCTTAAAAATCAAAACAATATTCAAAAACC | II | NA | NA | NA | NA | NA | NA | OpenSea | ATCATATTACCCACTGTATCCATGACTTACTTCTTAAAAATCAGGGCAGTGTTCAGAAAC[CG]ATATCTGACATTTACTTGAATGAAAAAAGGCATCATTTAGCCTGAACTTTCATTTTGATC | CGGTTTCTGAACACTGCCCTGATTTTTAAGAAGTAAGTCATGGATACAGT | chr5:25090960-25091290 | 3 | 2.56e-05 | 0.1816602 | 2.56e-05 | 0.1816602 | -0.0429880 | 0.0253829 | 0.0000525 | FALSE | 3.1557120 | ||||||||||||||||||||||||||||
| cg19464831 | chr6 | 132016197 |
|
75783950 | ACAATTTCACACTAATTCACTAAATAATACTAACCCCTCTCTTTAAAATC | II | NA | NA | NA | NA | NA | NA | OpenSea | GGCCTGAGAGTGCAGTTTCACACTGGTTCACTAGATGGTGCTGACCCCTCTCTTTGGGAT[CG]AAGTTTATTAGCCCTTTGTGTAGATGGGTGGCTGTACTGTGGCTCAGGACATTCTCTAGA | CGATCCCAAAGAGAGGGGTCAGCACCATCTAGTGAACCAGTGTGAAACTG | ENPP3 | NM_005021 | Body | chr6:132016040-132016475 | 3 | 2.56e-05 | 0.1816602 | 2.56e-05 | 0.1816602 | 0.0599406 | 0.0493640 | 0.0001022 | FALSE | -3.3248562 | |||||||||||||||||||||||||
| cg06570358 | chr4 | 148928832 |
|
58770550 | CRCTATCTCCCAAATTAAACTACTCAAACATTATATAACTTCAACAATTC | II | rs6535574 | 0.235238 | NA | NA | NA | NA | OpenSea | GACACAGAACTCGCTGTCTCCCAAGTTAAACTGCTCAAGCATTGTGTAACTTCAGCAATT[CG]GAAGGCTTTTCCCCTCCTTACATTCAGCTGAGATATACTTTCTTCTCAAGCTAAATTCCC | GCTGTCTCCCAAGTTAAACTGCTCAAGCATTGTGTAACTTCAGCAATTCG | ARHGAP10 | NM_024605 | Body | TRUE | ARHGAP10;ARHGAP10 | ENST00000506054.1;ENST00000506020.1 | 5’UTR;5’UTR | chr4:148928351-148928964 | 6 | chr4:148928322-148929772 | 6 | TRUE | 2.60e-05 | 0.1816602 | 2.60e-05 | 0.1816602 | 0.0536149 | 0.0396101 | 0.0000820 | FALSE | 1.4875114 | ||||||||||||||||||
| cg25462716 | chr5 | 127418816 |
|
67619912 | 71600895 | TTTTTTTTTCCCCCCACTTTAATAAACTCACAATACTTAAACTAAACCCA | TTTTTTTTTCCCCCCGCTTTAATAAACTCGCAATACTTAAACTAAACCCG | I | A | Red | rs3812049 | 0.282192 | NA | NA | NA | NA | chr5:127418594-127420512 | Island | CTCGGGTACCACGCGCCTAGTGGGAAGCCGCACTGACGCCTGCAGCATCTCGCGAGATTT[CG]GGCTCAGCCCAAGTACTGCGAGTTCACCAAAGCGGGGGGAAAAAAAAAAAGCCAGCGTGC | CGGGCTCAGCCCAAGTACTGCGAGTTCACCAAAGCGGGGGGAAAAAAAAA | SLC12A2;FLJ33630 | NM_001046;NR_015360 | TSS1500;TSS200 | high-CpG:127446557-127446768 | 5:127446446-127448456 | 5:127418659-127419310 | Promoter_Associated | CTC-228N24.3;SLC12A2;SLC12A2 | ENST00000501702.2;ENST00000262461.2;ENST00000343225.4 | TSS200;TSS1500;TSS1500 | CTC-228N24.3;CTC-228N24.3;CTC-228N24.3;CTC-228N24.3;CTC-228N24.3;CTC-228N24.3;CTC-228N24.3;CTC-228N24.3;SLC12A2;SLC12A2;SLC12A2 | ENST00000508878.1;ENST00000501652.1;ENST00000514409.1;ENST00000501702.2;ENST00000501173.2;ENST00000508353.1;ENST00000514573.1;ENST00000499346.2;ENST00000262461.2;ENST00000509205.1;ENST00000343225.4 | TSS200;TSS200;TSS200;TSS200;TSS200;TSS1500;TSS200;TSS200;TSS1500;TSS1500;TSS1500 | chr5:127418185-127419215 | 3 | TRUE | 2.61e-05 | 0.1816602 | 2.61e-05 | 0.1816602 | 0.0554347 | 0.0423591 | 0.0000877 | FALSE | -4.7891098 | |||||||||
| cg12085314 | chr1 | 94511426 |
|
56749869 | AAAAAACTTAAAAACTATATCACRTAAATTCRCTACCCCCTACRAAATCC | II | NA | NA | NA | NA | NA | NA | OpenSea | TGGGGCTCTCCAAAGGACTTGAAGACTGTGTCACGTGGGTTCGCTGCCCCCTGCGAGGTC[CG]TGTCTGCTGCTCCTTGGGAAACCATGGCGGGCCGTGTTCTCCTCTCAGCAGATGGCGCTC | CGGACCTCGCAGGGGGCAGCGAACCCACGTGACACAGTCTTCAAGTCCTT | ABCA4 | NM_000350 | Body | 1:94283987-94284106 | 1:94510499-94511658 | Unclassified | ABCA4 | ENST00000546054.1 | 5’UTR | ABCA4 | ENST00000546054.1 | 5’UTR | chr1:94511120-94511715 | 3 | TRUE | 2.61e-05 | 0.1816602 | 2.61e-05 | 0.1816602 | 0.0714784 | 0.0704288 | 0.0001458 | FALSE | -4.5052233 | |||||||||||||||
| cg07443704 | chr1 | 239472205 |
|
5745280 | 27797979 | AAAAAACACTATTAAAAATTAAAAACATACATTCAACTCTAAAAAACACA | AAAAAACGCTATTAAAAATTAAAAACGTACATTCAACTCTAAAAAACGCG | I | C | Grn | rs6429133 | 0.000616 | NA | NA | NA | NA | OpenSea | CTGCCTCTGGAAAGAAAACGCTGTTGAAAGTTAGAAGCGTGCATTCAGCTCTAGAGGGCG[CG]CAAGAGTCTCCACCTGACTTCACGTCCTCACCCCTCTGAGCCAGACAGTGGCTGCTGATT | CGCGCCCTCTAGAGCTGAATGCACGCTTCTAACTTTCAACAGCGTTTTCT | 1:239472058-239472337 | Unclassified_Cell_type_specific | chr1:239472080-239472295 | 3 | 2.62e-05 | 0.1816602 | 2.62e-05 | 0.1816602 | 0.0473240 | 0.0308953 | 0.0000639 | FALSE | -1.9180310 | ||||||||||||||||||||||
| cg14740729 | chr12 | 67750397 |
|
2641328 | CAAAAATCAAAAATCAACTAACAAATACACAAACAAAATACCAAATTCCC | II | NA | NA | rs17781844 | 0.032775 | rs17781844 | 0.032775 | OpenSea | AAAAAAAAAAAAGGGACATTTGCCAAGGAACAATTTCACCACAGGAGCTTGGCTGGGAAA[CG]GGAATTTGGTATCTTGCTTGTGCACCTGCCAGTTGATTTCTGATTTCTGTATTAGGGGAG | CGGGAATTTGGTATCTTGCTTGTGCACCTGCCAGTTGATTTCTGATTTCT | chr12:67750280-67750470 | 3 | 2.64e-05 | 0.1816602 | 2.64e-05 | 0.1816602 | 0.1145576 | 0.1812753 | 0.0003752 | FALSE | 2.4161650 | ||||||||||||||||||||||||||||
| cg13350775 | chr11 | 60043430 |
|
41747538 | TACCAATATCCCCTAAAAACAAAATCTATTTAATAACAATAACCCAACTC | II | NA | NA | NA | NA | NA | NA | OpenSea | TTGTAATGATAAAGAAGAGAAGAATGTGATTTGTATACACTACTTTGGTGTCAGCATAGA[CG]AGTTGGGCTATTGTCATTAAACAGACCCTGTCCTTAGGGGACACTGGCATTTATTTTGCA | CGAGTTGGGCTATTGTCATTAAACAGACCCTGTCCTTAGGGGACACTGGC | TRUE | TRUE | 2.72e-05 | 0.1816602 | 2.72e-05 | 0.1816602 | -0.0432566 | 0.0259917 | 0.0000538 | FALSE | 3.1695052 | ||||||||||||||||||||||||||||
| cg21994822 | chr11 | 66741747 |
|
5714981 | AACRCTAAACCTAAAAAAAATCCAAACCTCCTAACTCCTAACCTAAAACC | II | NA | NA | NA | NA | NA | NA | OpenSea | ACATTAGGGGCAGCGCTGGGCCTGGAAAAAATCCAGGCCTCCTGACTCCTAGCCTGGAGC[CG]TCCTGTTTCCTTCTGTTTCTTAAAAAAAAAAAAAAAAAAAAAGAAATTCTCCAGTATTGT | CGGCTCCAGGCTAGGAGTCAGGAGGCCTGGATTTTTTCCAGGCCCAGCGC | C11orf86 | NM_001136485 | TSS1500 | TRUE | C11orf86 | ENST00000308963.4 | TSS1500 | C11orf86 | ENST00000308963.4 | TSS1500 | chr11:66741480-66741995 | 3 | TRUE | 2.73e-05 | 0.1816602 | 2.73e-05 | 0.1816602 | 0.0450881 | 0.0282483 | 0.0000585 | FALSE | 1.4377852 | |||||||||||||||||
| cg20718640 | chr21 | 45160784 |
|
79667455 | ATAAAAACATAACAAACCCTACCTACCAAAATATCCRAATAACAATAACC | II | NA | NA | NA | NA | NA | NA | OpenSea | AGGAGTTGGGGGTGGGGACATAACAAGCCCTACCTGCCAGGGTATCCGGGTGACAGTGGC[CG]GTGGCCGAGCACCCCGGCCTGAATAGCTGGGGACTAATGCAGGAGACGCTGGGAAACAAG | CGGCCACTGTCACCCGGATACCCTGGCAGGTAGGGCTTGTTATGTCCCCA | PDXK | NM_003681 | Body | TRUE | 21:43985198-43985788 | 21:45160523-45160831 | Unclassified_Cell_type_specific | PDXK | ENST00000467908.1 | TSS1500 | PDXK;PDXK;PDXK;PDXK;PDXK;PDXK;PDXK;PDXK;PDXK | ENST00000467640.1;ENST00000343528.6;ENST00000398078.3;ENST00000490666.1;ENST00000398085.3;ENST00000470029.1;ENST00000498040.1;ENST00000472777.1;ENST00000481512.1 | TSS1500;TSS1500;TSS1500;TSS200;5’UTR;5’UTR;5’UTR;5’UTR;5’UTR | chr21:45160420-45161015 | 3 | 2.74e-05 | 0.1816602 | 2.74e-05 | 0.1816602 | 0.1139761 | 0.1806561 | 0.0003739 | FALSE | 3.1798340 | |||||||||||||||
| cg26537098 | chr17 | 3506137 |
|
5731890 | 79664112 | TTTCTTTTCTTCACTCACCTAAATTCCTCTCAAAATTCAAACCCCAACCA | TTTCTTTTCTTCACTCACCTAAATTCCTCTCAAAATTCGAACCCCAACCG | I | A | Red | NA | NA | NA | NA | NA | NA | OpenSea | ATCGGAGACAAATTTCTTTTCTTCACTCACCTGGGTTCCTCTCAAGATTCGAGCCCCAGC[CG]GCCTCAGTGGCTCACGCCCGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCGCC | TTTCTTTTCTTCACTCACCTGGGTTCCTCTCAAGATTCGAGCCCCAGCCG | TRPV1 | NM_080704 | 5’UTR | TRUE | 17:3505564-3506140 | Unclassified | RP11-235E17.2;RP11-235E17.4 | ENST00000572705.1;ENST00000575593.1 | 5’UTR;TSS1500 | RP11-235E17.2;RP11-235E17.2;RP11-235E17.4 | ENST00000572919.1;ENST00000572705.1;ENST00000575593.1 | 3’UTR;5’UTR;TSS1500 | chr17:3505511-3506217 | 6 | chr17:3505565-3506230 | 6 | TRUE | 2.76e-05 | 0.1816602 | 2.76e-05 | 0.1816602 | 0.0666817 | 0.0619224 | 0.0001282 | FALSE | 2.4573133 | |||||||||
| cg23943268 | chr13 | 33589621 |
|
76794177 | CTATACAAAATTATACRCACAAATCTACTAAAACRAAAAATCCCTAAATC | II | NA | NA | NA | NA | NA | NA | chr13:33589928-33591428 | N_Shore | ATGGGTGTTCCGGCTAAATTCTCCCTCCCCTTTCCCTCCACAGCTCAGATGGCAAATGTG[CG]ACCCAGGGACCTCCCGCTCCAGCAGACCTGTGCGCACAACTTTGCACAGATTACCTGCTA | TGTGCAAAGTTGTGCGCACAGGTCTGCTGGAGCGGGAGGTCCCTGGGTCG | KL | NM_004795 | TSS1500 | RDMR | KL;KL | ENST00000426690.2;ENST00000487852.1 | TSS1500;TSS1500 | KL;KL | ENST00000426690.2;ENST00000487852.1 | TSS1500;TSS1500 | chr13:33589140-33589795 | 3 | TRUE | 2.77e-05 | 0.1816602 | 2.77e-05 | 0.1816602 | 0.0516060 | 0.0371115 | 0.0000768 | FALSE | -4.0329090 | ||||||||||||||||
| cg16575491 | chr1 | 46395026 |
|
45774159 | AATATCCTCAATTCCTTAATCAATATTTCATACCTACTTATTACTACTTC | II | NA | NA | NA | NA | NA | NA | OpenSea | CCTAAAGCCTGAGTGTCCTCAGTTCCTTGGTCAGTGTTTCATACCTGCTTATTACTGCTT[CG]TTGTGAAGATTGTTTGCCCAGAGCAGCAGGGGGGGAGTTGTTGGTGGTGAAGCCCCTTGG | CGAAGCAGTAATAAGCAGGTATGAAACACTGACCAAGGAACTGAGGACAC | MAST2 | NM_015112 | Body | MAST2 | ENST00000432341.1 | 5’UTR | MAST2;MAST2;MAST2 | ENST00000432341.1;ENST00000468212.1;ENST00000498364.1 | 5’UTR;5’UTR;5’UTR | chr1:46394925-46395330 | 3 | 2.78e-05 | 0.1816602 | 2.78e-05 | 0.1816602 | 0.0611402 | 0.0521299 | 0.0001079 | FALSE | -2.3662749 | |||||||||||||||||||
| cg09268480 | chr16 | 1993645 |
|
37611212 | TCTCTTTCACTATTTCAATCATCATTTTACAAAAACRATTTCACCTAAAC | II | NA | NA | NA | NA | NA | NA | chr16:1992668-1993646 | Island | CCCCCCAGTCCAGTCCCTGGTACTAAGCCCGGAGCTGCCGGAGGTCATGCAGCCTTTCCG[CG]CCCAGGTGAAACCGCCTTTGCAAAATGATGACTGAAACAGTGAAAGAGATCTAACTCAGC | CGCCCAGGTGAAACCGCCTTTGCAAAATGATGACTGAAACAGTGAAAGAG | MSRB1 | NM_016332 | TSS1500 | 16:1932735-1933647 | 16:1992264-1993818 | Promoter_Associated | MSRB1;MSRB1;MSRB1 | ENST00000399753.2;ENST00000564908.1;ENST00000361871.3 | TSS1500;TSS1500;TSS1500 | MSRB1;MSRB1;MSRB1;MSRB1 | ENST00000473663.1;ENST00000399753.2;ENST00000564908.1;ENST00000361871.3 | TSS1500;TSS1500;TSS1500;TSS1500 | chr16:1993560-1993830 | 3 | 2.78e-05 | 0.1816602 | 2.78e-05 | 0.1816602 | -0.0418455 | 0.0244224 | 0.0000505 | FALSE | -3.7430928 | |||||||||||||||
| cg24127506 | chr14 | 102050490 |
|
69711892 | 69790137 | ACCCTACAATAACTAAACTAAACCACAACTCAACCATATCTACAAATCCA | ACCCTACAATAACTAAACTAAACCGCGACTCAACCATATCTACAAATCCG | I | A | Red | NA | NA | NA | NA | NA | NA | chr14:102050814-102051025 | N_Shore | GAAGCTCGGGGAGCCCTGCAGTGGCTGGACTGGGCCGCGGCTCAGCCATGTCTGCAGATC[CG]GGCGTCTGTACAGTCCTATGGGGGTCGATAAGGAAATGGGATGCTTTTCACATAAATATG | GCCCTGCAGTGGCTGGACTGGGCCGCGGCTCAGCCATGTCTGCAGATCCG | 14:101120126-101120800 | chr14:102050465-102051195 | 3 | TRUE | 2.81e-05 | 0.1816602 | 2.81e-05 | 0.1816602 | -0.0532908 | 0.0396706 | 0.0000821 | FALSE | 2.1505611 | |||||||||||||||||||||
| cg14390012 | chr4 | 145816012 |
|
8711110 | ACAAAACAAACTTAATATAACAACACTATAAACTAACTAACTTAAAATAC | II | NA | NA | NA | NA | NA | NA | OpenSea | CCAACTTAGGCTCAATCAGAGAAAGTAAAACATGCTCTCCTAACCAATCACATAACATGC[CG]CACTTCAAGTTAGCCAGCCTACAGTGTTGCCACACCAAGCCTGTTTTGCCTGTGATGCAG | CAAAACAGGCTTGGTGTGGCAACACTGTAGGCTGGCTAACTTGAAGTGCG | chr4:145815720-145816035 | 3 | 2.85e-05 | 0.1816602 | 2.85e-05 | 0.1816602 | 0.0486580 | 0.0331752 | 0.0000687 | FALSE | 2.8003825 | ||||||||||||||||||||||||||||
| cg15481472 | chr6 | 159225665 |
|
27761596 | AATCTATAAACCTTTAATTCCCTATCTTTTCTAAACCTACAATTAAAACC | II | rs3127196 | 0.403566 | NA | NA | NA | NA | OpenSea | AACTACACACATAAACAAAAGTAAGGGACAAGGCCAAGATGGCTTATTATATGCTAGAGT[CG]GTTTTAATTGTAGGCTCAGAAAAGATAGGGAACTAAAGGCCTATAGATTAAACATCACTA | CGGTTTTAATTGTAGGCTCAGAAAAGATAGGGAACTAAAGGCCTATAGAT | EZR;EZR | NM_003379;NM_001111077 | Body;Body | TRUE | 6:159225380-159225677 | Promoter_Associated | EZR | ENST00000476189.1 | 3’UTR | EZR | ENST00000476189.1 | 3’UTR | chr6:159225245-159225695 | 3 | TRUE | 2.87e-05 | 0.1816602 | 2.87e-05 | 0.1816602 | -0.0502703 | 0.0354578 | 0.0000734 | FALSE | 2.9986579 | |||||||||||||||
| cg26470479 | chr17 | 40805923 |
|
29699587 | 60652990 | ACAACAATTCCCAAAAAAAACCCACCAAACAAAAACAAACTAACAAACCA | ACAACGATTCCCAAAAAAAACCCGCCAAACAAAAACAAACTAACAAACCG | I | A | Red | rs115776557 | 0.016942 | NA | NA | NA | NA | chr17:40805674-40805957 | Island | GCCAGCGCGTCTGCAGCGGTTCCCAGAGAAAGCCCGCCAGGCAGGGACAGACTGACAGAC[CG]ACGGAAAGGTCTTCCCAGCGAAGACTTGGAACGCCCCAGGGGGTGGGGGAGGCTGCACCG | CGGTCTGTCAGTCTGTCCCTGCCTGGCGGGCTTTCTCTGGGAACCGCTGC | chr17:40805539-40805539 | TRUE | 17:38059376-38059510 | chr17:40805340-40806110 | 3 | TRUE | 2.88e-05 | 0.1816602 | 2.88e-05 | 0.1816602 | 0.0405462 | 0.0230802 | 0.0000478 | FALSE | -2.3229237 | |||||||||||||||||||
| cg14548901 | chr2 | 11430093 |
|
33765118 | CCATTTTTTAAAAACCAAACACTATCACAATTAAACACTATTATTTTTAC | II | NA | NA | rs6707667 | 0.377960 | rs6707667 | 0.377960 | OpenSea | TGTTTATAAAACCATTTTTTAAAGACCAAACACTATCACAATTAGGCACTATTATTTTTA[CG]TAGCATCAATTTTTAATGATACTATGATACTTTAATGTAGGTTGATAACATATACATTTA | CATTTTTTAAAGACCAAACACTATCACAATTAGGCACTATTATTTTTACG | ROCK2 | NM_004850 | Body | TRUE | ROCK2 | ENST00000462366.1 | 3’UTR | ROCK2 | ENST00000462366.1 | 3’UTR | TRUE | 2.88e-05 | 0.1816602 | 2.88e-05 | 0.1816602 | 0.2482092 | 0.8649418 | 0.0017900 | FALSE | 1.0509247 | |||||||||||||||||||
| cg02117540 | chr22 | 40256586 |
|
47641109 | TCTCTCCAATCCCAAATATAAATATTCACTCTATATCTCACTAAATAAAC | II | NA | NA | NA | NA | NA | NA | OpenSea | CTTATAATGTCTCTCTCCAATCCCAAGTGTGGATGTTCACTCTATGTCTCACTGGGTGAA[CG]TTTGAAACTCTTGATTAAGACAGAAAAGTACCTGAATGATTTTTAGCAAGCTTAACTTGT | CGTTCACCCAGTGAGACATAGAGTGAACATCCACACTTGGGATTGGAGAG | ENTHD1 | NM_152512 | Body | chr22:40255465-40256779 | 6 | chr22:40255584-40256808 | 6 | 2.89e-05 | 0.1816602 | 2.89e-05 | 0.1816602 | -0.0653843 | 0.0600291 | 0.0001242 | FALSE | 1.7442933 | |||||||||||||||||||||||
| cg05634637 | chr5 | 31197518 |
|
35749162 | AATTACCTTATACTTCTTACTTAATCATAACTACTTATTCTTTAATATCC | II | NA | NA | rs114864900 | 0.022155 | rs114864900 | 0.022155 | chr5:31193952-31194419 | S_Shelf | CAGCAGAATCCAGTTGCCTTGTGCTTCTTGCTTAGTCATGGCTGCTTATTCTTTGGTGTC[CG]TCAGAATTAGGGTCTCACTTATAAAAATAACAAGCAGTGACTCAGTCTGAATTGCATTCT | CGGACACCAAAGAATAAGCAGCCATGACTAAGCAAGAAGCACAAGGCAAC | CDH6 | NM_004932 | 5’UTR | RP11-152K4.2;CDH6;CDH6 | ENST00000523584.1;ENST00000265071.2;ENST00000514738.1 | 3’UTR;5’UTR;5’UTR | RP11-152K4.2;CDH6;CDH6;CDH6 | ENST00000523584.1;ENST00000265071.2;ENST00000514738.1;ENST00000506396.1 | 3’UTR;5’UTR;5’UTR;5’UTR | chr5:31197265-31197655 | 3 | TRUE | 2.94e-05 | 0.1816602 | 2.94e-05 | 0.1816602 | 0.0560145 | 0.0441977 | 0.0000915 | FALSE | 0.0813663 | |||||||||||||||||
| cg07596394 | chr10 | 108926158 |
|
79753915 | AAATTTAATAACTAAAAAACCTACCCTCCTTACATTTACACTTTTTCTAC | II | NA | NA | NA | NA | NA | NA | chr10:108923780-108924805 | S_Shore | TCAATCCAATCCAGAGAGGTGTTGTAAAATATCGGCCTAAGTTCTTGTTCTTACGACCAG[CG]CAGAAAAAGTGCAAATGCAAGGAGGGCAGGCTTCTCAGCCATTAAACTTGAGTACCTAAA | AGTTTAATGGCTGAGAAGCCTGCCCTCCTTGCATTTGCACTTTTTCTGCG | chr10:108926143-108926535 | 6 | 2.94e-05 | 0.1816602 | 2.94e-05 | 0.1816602 | -0.0362631 | 0.0185269 | 0.0000383 | FALSE | 3.9392406 | |||||||||||||||||||||||||||
| cg13348277 | chr20 | 45775427 |
|
41715231 | TTCCATTAAAACCTAACAAATAATAAACCCTTCATAAAACRCTACTAAAC | II | NA | NA | NA | NA | NA | NA | OpenSea | GCCAGAAGCCTTTGTTCTCCGAGCCTGTAGTAGTACCACCTGTAAGGGAGTTCCTTCCCG[CG]TCCAGCAGCGCTTTATGAAGGGCTTACCATTTGCCAGGCCCTAATGGAATGCTGTGGATT | TCCATTAGGGCCTGGCAAATGGTAAGCCCTTCATAAAGCGCTGCTGGACG | EYA2;EYA2 | NM_172110;NM_005244 | Body;Body | TRUE | EYA2 | ENST00000497062.1 | 3’UTR | chr20:45775160-45775655 | 3 | 2.95e-05 | 0.1816602 | 2.95e-05 | 0.1816602 | -0.0409312 | 0.0236145 | 0.0000489 | FALSE | 3.4949089 | |||||||||||||||||||||
| cg27240207 | chr7 | 26704735 |
|
6639103 | ATATCAAAAAAACCTTTCCTACATCTAATCTTAAAAACATTCTAACTATC | II | NA | NA | NA | NA | NA | NA | OpenSea | GATTTGGCAGCAACTGTGAAACTTCCCACTTACTTGCACAAATTTTTGATCTGCCCAAGG[CG]ACAGCTAGAATGCTTTCAAGATCAGATGCAGGAAAGGCTTCTCTGATATTACGCAAGTGG | TATCAGAGAAGCCTTTCCTGCATCTGATCTTGAAAGCATTCTAGCTGTCG | 7:26704716-26704946 | Unclassified_Cell_type_specific | chr7:26704680-26704935 | 3 | 2.96e-05 | 0.1816602 | 2.96e-05 | 0.1816602 | 0.0554471 | 0.0433679 | 0.0000898 | FALSE | -3.5248152 | ||||||||||||||||||||||||||
| cg17655970 | chr13 | 112985463 |
|
70719992 | 20621215 | AAAAAAAACCAAAAAAACATCAATCCATTTCAAACACACACCTATATCCA | AAAAAAAACCGAAAAAACATCGATCCGTTTCAAACACACGCCTATATCCG | I | T | Red | NA | NA | NA | NA | NA | NA | chr13:112984966-112985733 | Island | TCTGGTGTCTGTGAAAGGAACCGGGGGGACATCGATCCGTTTCAAACACACGCCTGTGTC[CG]TGAGGAGTCCGAGAGGCAGAGCTGGAGCGTCGCCCGGAAGCTGCCCTCTGTGGCCATGAG | CGGACACAGGCGTGTGTTTGAAACGGATCGATGTCCCCCCGGTTCCTTTC | 13:112032968-112033729 | RP11-315H15.1;RP11-315H15.1 | ENST00000413637.1;ENST00000413637.1 | 1stExon;3’UTR | RP11-315H15.1;RP11-315H15.1 | ENST00000413637.1;ENST00000413637.1 | 1stExon;3’UTR | chr13:112985105-112985695 | 3 | TRUE | 2.96e-05 | 0.1816602 | 2.96e-05 | 0.1816602 | -0.0929855 | 0.1219933 | 0.0002525 | FALSE | -3.7520847 | |||||||||||||||
| cg01135024 | chr5 | 7872175 |
|
73771879 | TTTTAACACCAAAATAATCATACTATTTATCCTCCCTAACTAATAATTTC | II | rs3822444 | 0.083295 | NA | NA | NA | NA | chr5:7868863-7869840 | S_Shelf | TGAATTTTTTTTTTTAACACCAAGATAGTCATGCTATTTATCCTCCCTGGCTGATGGTTT[CG]TCTAGCTGTTCATAATCTAATATCCTTCCTATTTCACATAGTCCTTTTCAAGGTACTGAC | TTTAACACCAAGATAGTCATGCTATTTATCCTCCCTGGCTGATGGTTTCG | MTRR;MTRR | NM_024010;NM_002454 | Body;Body | MTRR | ENST00000502509.1 | 5’UTR | MTRR | ENST00000502509.1 | 5’UTR | chr5:7871734-7872240 | 6 | 3.01e-05 | 0.1816602 | 3.01e-05 | 0.1816602 | -0.0454192 | 0.0291947 | 0.0000604 | FALSE | 1.8860813 | ||||||||||||||||||
| cg27090594 | chr16 | 3077878 |
|
6717302 | 41794911 | AATACCCAACCCCATCCCTACCCTAAAAAAAATAAACATATATTAATTCA | AATACCCAACCCCATCCCTACCCTAAAAAAAATAAACGTATATTAATTCG | I | A | Red | rs1052458 | 0.498636 | NA | NA | NA | NA | chr16:3078141-3078553 | N_Shore | TCTTGATACATAAATACCCAGCCCCATCCCTGCCCTAGAAAAGATAGACGTATATTAATT[CG]GAAAATAGCTCTGTTCACCTGCCCCTGCCACCCACCTGGAGCTCCTGCCCCACAAAGCTG | AATACCCAGCCCCATCCCTGCCCTAGAAAAGATAGACGTATATTAATTCG | CCDC64B | NM_001103175 | 3’UTR | 16:3077748-3078880 | Unclassified | CCDC64B;CCDC64B;CCDC64B | ENST00000573514.1;ENST00000572449.1;ENST00000389347.4 | 3’UTR;3’UTR;3’UTR | CCDC64B;CCDC64B;CCDC64B;CCDC64B | ENST00000573514.1;ENST00000572449.1;ENST00000389347.4;ENST00000572240.1 | 3’UTR;3’UTR;3’UTR;3’UTR | chr16:3077767-3079097 | 6 | chr16:3075097-3080607 | 6 | TRUE | 3.02e-05 | 0.1816602 | 3.02e-05 | 0.1816602 | 0.0940646 | 0.1253075 | 0.0002593 | FALSE | 2.4574773 | |||||||||
| cg01727419 | chr10 | 105616523 |
|
92736417 | AAATAAATAAAACCTTAAATCTATACCTAAATTCTAACAATCTAAAAAAC | II | NA | NA | NA | NA | NA | NA | chr10:105614511-105615456 | S_Shore | AACATCTGAAAAGAGGACAAATAATTTTGTGACCTAATTGCATTAATACTTTCTTCTGCG[CG]TTCTCTAGACTGTCAGAACCCAGGCACAGATCTAAGGCTTTATTTATTCACATATTTGCT | AATAAATAAAGCCTTAGATCTGTGCCTGGGTTCTGACAGTCTAGAGAACG | SH3PXD2A | NM_014631 | TSS1500 | SH3PXD2A;SH3PXD2A | ENST00000355946.2;ENST00000369774.4 | TSS1500;TSS1500 | SH3PXD2A;SH3PXD2A | ENST00000355946.2;ENST00000369774.4 | TSS1500;TSS1500 | chr10:105613301-105616869 | 6 | TRUE | 3.03e-05 | 0.1816602 | 3.03e-05 | 0.1816602 | 0.0556274 | 0.0438329 | 0.0000907 | FALSE | 2.9234727 | |||||||||||||||||
| cg01494348 | chr8 | 144660395 |
|
77787291 | CRCTACTCACTAACCTCTACCAAACCACCATAACRTTAAACTATTAACRC | II | NA | NA | NA | NA | NA | NA | chr8:144659745-144660635 | Island | CGCCGAACGGGCAGCGGCGGAAGAAGAGCTCGAACTCGGCGGCGTCCCGCGCCCGGCCCG[CG]CGCCAATAGCCCAACGCCATGGTGGCCTGGTAGAGGTCAGTGAGCAGCGGCCGCGCCGCC | GCTGCTCACTGACCTCTACCAGGCCACCATGGCGTTGGGCTATTGGCGCG | NAPRT1 | NM_145201 | 1stExon | 8:144730852-144731887 | 8:144659590-144660948 | Promoter_Associated | NAPRT1;NAPRT1;NAPRT1;RP11-661A12.7 | ENST00000276844.7;ENST00000435154.3;ENST00000449291.2;ENST00000529247.1 | 1stExon;1stExon;1stExon;TSS1500 | NAPRT1;NAPRT1;NAPRT1;NAPRT1;NAPRT1;NAPRT1;NAPRT1;NAPRT1;NAPRT1;RP11-661A12.7;NAPRT1;NAPRT1;NAPRT1 | ENST00000491904.1;ENST00000464332.1;ENST00000462059.1;ENST00000462059.1;ENST00000276844.7;ENST00000340490.3;ENST00000435154.3;ENST00000449291.2;ENST00000488096.1;ENST00000529247.1;ENST00000532645.1;ENST00000480946.2;ENST00000525583.1 | 3’UTR;TSS1500;3’UTR;1stExon;1stExon;1stExon;1stExon;1stExon;TSS1500;TSS1500;TSS200;TSS200;TSS200 | chr8:144659785-144661015 | 3 | TRUE | 3.05e-05 | 0.1816602 | 3.05e-05 | 0.1816602 | 0.0983668 | 0.1372390 | 0.0002840 | FALSE | -3.3093092 | ||||||||||||||
| cg17931041 | chr2 | 219906468 |
|
49756201 | ATACATATCAAAATACCAAACCCACAAAATAACTTCCTATAAATTTAATC | II | NA | NA | NA | NA | NA | NA | chr2:219906107-219906328 | S_Shore | ACATGGTAATGTAGAGCCTCCTAGTTGTCGTGACGTTCCAGCAATCATGACTTTAATTGA[CG]ACCAAATTCACAGGAAGCTACTCTGTGGGCTTGGCACTCTGACATGCATAGAGACAGAAG | CGACCAAATTCACAGGAAGCTACTCTGTGGGCTTGGCACTCTGACATGCA | CCDC108;CCDC108 | NM_152389;NM_194302 | TSS1500;TSS1500 | TRUE | CCDC108;CCDC108;CCDC108 | ENST00000409865.3;ENST00000341552.5;ENST00000545086.1 | TSS1500;TSS1500;TSS1500 | CCDC108;CCDC108;CCDC108;CCDC108 | ENST00000458526.1;ENST00000409865.3;ENST00000341552.5;ENST00000462848.1 | TSS1500;TSS1500;TSS1500;TSS1500 | chr2:219905896-219906482 | 6 | chr2:219905876-219906502 | 6 | TRUE | 3.05e-05 | 0.1816602 | 3.05e-05 | 0.1816602 | 0.0479704 | 0.0326511 | 0.0000676 | FALSE | -2.4490036 | ||||||||||||||
| cg04842962 | chr6 | 43655489 |
|
77616588 | AAAATCAAAATAAATTTTTAAAAATAACRACCCTCAAAACTCTAATATCC | II | rs117193323 | 0.011719 | NA | NA | NA | NA | chr6:43655271-43655618 | Island | GCCGAGACCAGCTGGTCGCTGCCGGGCCCGCTAGTAGCCCACGGAGAAGCCGCCCACAGC[CG]GACACCAGAGCCTTGAGGGCCGCCATCTTCAAAAACCTACCCTGACCTCTCGTCCATTTC | AGGTCAGGGTAGGTTTTTGAAGATGGCGGCCCTCAAGGCTCTGGTGTCCG | MRPS18A | NM_018135 | 1stExon | high-CpG:43763442-43763536 | 6:43763167-43763659 | 6:43655181-43656153 | Promoter_Associated | MRPS18A;MRPS18A | ENST00000372133.3;ENST00000372118.2 | 1stExon;1stExon | MRPS18A;MRPS18A | ENST00000372133.3;ENST00000372118.2 | 1stExon;1stExon | chr6:43655180-43655730 | 3 | TRUE | 3.08e-05 | 0.1816602 | 3.08e-05 | 0.1816602 | 0.1227726 | 0.2142046 | 0.0004433 | FALSE | -2.6871399 | |||||||||||||
| cg06405219 | chr7 | 30219135 |
|
47697221 | CTACTTTAACAAATAAACTCAACTTTATCAATTTTATATACTTCCRTTCC | II | NA | NA | NA | NA | NA | NA | OpenSea | TTTTCAAGATTTATCTCAGAGCAGAACTCTTTTGTCAAGCAAACTTAACATGGAATGGAA[CG]GAACGGAAGTATATAAAACTGATAAAGCTGAGCTCACTTGTCAAAGCAGGGCTGGGGACA | CGGAACGGAAGTATATAAAACTGATAAAGCTGAGCTCACTTGTCAAAGCA | AC007036.6 | ENST00000430537.1 | TSS1500 | AC007036.6 | ENST00000430537.1 | TSS1500 | chr7:30218493-30219261 | 5 | 3.23e-05 | 0.1816602 | 3.23e-05 | 0.1816602 | 0.2553485 | 0.9349397 | 0.0019349 | FALSE | -1.9168393 | ||||||||||||||||||||||
| cg24417155 | chr17 | 40808068 |
|
5607546 | AAAATACTTTCTATTATCCCTACATAATTTCCTCCTTTATAAATAACTCC | II | NA | NA | rs12943352 | 0.450036 | NA | NA | chr17:40811232-40811597 | N_Shelf | TAGGAATTGAGGCTGGACCAAGCACAGATGTGGGTCTGGCTGAGCTCAGGCCACTAGCCT[CG]GAGTCACCCACAAAGGAGGAAATTATGCAGGGACAACAGAAAGTACCTCTGAGACCTGTG | CGGAGTCACCCACAAAGGAGGAAATTATGCAGGGACAACAGAAAGTACCT | 17:40808028-40808338 | Unclassified_Cell_type_specific | chr17:40807945-40808455 | 3 | TRUE | 3.25e-05 | 0.1816602 | 3.25e-05 | 0.1816602 | -0.0992715 | 0.1414295 | 0.0002927 | FALSE | 0.0435794 | ||||||||||||||||||||||||
| cg11078128 | chr1 | 6336743 |
|
44642530 | CTCTCACTTAAAAACTACCCACATAAACACRAATTCTAAACTAAAAACAC | II | NA | NA | NA | NA | NA | NA | chr1:6339948-6340268 | N_Shelf | CCGCCAGGGCACATCTGGAGGGACGGAACGCACATGCAGGTTCACCGCACGGAGCACACA[CG]TGCTCCCAGCCCAGAACTCGTGCTCATGTGGGCAGTCCCCAAGTGAGAGCTGAAAATCCC | CGTGCTCCCAGCCCAGAACTCGTGCTCATGTGGGCAGTCCCCAAGTGAGA | ACOT7;ACOT7;ACOT7;ACOT7 | NM_181866;NM_181865;NM_181864;NM_007274 | Body;Body;Body;Body | chr1:6336471-6336471 | TRUE | ACOT7;ACOT7 | ENST00000377860.4;ENST00000418124.1 | 3’UTR;3’UTR | chr1:6336225-6336915 | 3 | 3.25e-05 | 0.1816602 | 3.25e-05 | 0.1816602 | -0.0577787 | 0.0479279 | 0.0000992 | FALSE | 2.9411553 | |||||||||||||||||||
| cg13784557 | chr6 | 31430916 |
|
84602843 | AATTCTCACTTCCATTAAATATTAAATTCCTAAATCAACCAATCAATATC | II | rs6928071 | 0.022884 | NA | NA | NA | NA | OpenSea | GATGCGGCCTCAGTTCTCACTTCCATTGGGTGTTGGGTTCCTAGATCAGCCAATCAGTGT[CG]CCGCGGTTCCTGGTTCTAAAGTCCTCGCCGGCCCACCGGGACTCAGATTCTCCCCAGACG | GTTCTCACTTCCATTGGGTGTTGGGTTCCTAGATCAGCCAATCAGTGTCG | HCP5 | NM_006674 | TSS200 | TRUE | 6:31538895-31539050 | 6:31430369-31431494 | Promoter_Associated | HCP5 | ENST00000414046.2 | 5’UTR | HCP5;HCP5 | ENST00000460889.1;ENST00000414046.2 | TSS200;5’UTR | chr6:31430745-31431015 | 3 | TRUE | TRUE | 3.34e-05 | 0.1816602 | 3.34e-05 | 0.1816602 | 0.0458618 | 0.0303479 | 0.0000628 | FALSE | -4.7394425 | |||||||||||||
| cg04267686 | chr6 | 105907265 |
|
17745107 | AAACTTTCAAAATTAAAACCTTCAAATACTACRTCCTAAAATAAATACTC | II | NA | NA | NA | NA | NA | NA | OpenSea | AATACCTATGACAAATATTAGGATGTGATGGTGCTGGGCTAGGAAGAGTGGACGTGACAA[CG]AGCACTCACTCTAGGACGTAGTATCTGAAGGCTTCAACTCTGAAAGTCTAGTGACTCAGC | CGAGCACTCACTCTAGGACGTAGTATCTGAAGGCTTCAACTCTGAAAGTC | chr6:105907056-105907056 | 6:105906942-105907272 | Unclassified | chr6:105907005-105907390 | 3 | 3.40e-05 | 0.1816602 | 3.40e-05 | 0.1816602 | -0.0431676 | 0.0269698 | 0.0000558 | FALSE | 3.3254771 | |||||||||||||||||||||||||
| cg07144177 | chr6 | 8081020 |
|
62691980 | AACCAATAAAACAATAACTTACAACCATAACCCCATAAATAAATAATATC | II | NA | NA | rs2815164 | 0.284727 | rs2815164 | 0.284727 | OpenSea | GGTAAAGAGAAAACCAGTAGGGCAGTAACTTGCAGCCATGACCCCATGAATGGGTGGTGT[CG]TTCCTTCTCCTAAGTCACATTTACTTAACAGATAGTGCAAGTCTCTATAATGCTGACAGG | CGACACCACCCATTCATGGGGTCATGGCTGCAAGTTACTGCCCTACTGGT | EEF1E1-BLOC1S5;EEF1E1;EEF1E1 | NR_037618;NM_001135650;NM_004280 | Body;Body;Body | chr6:8080920-8081250 | 3 | 3.40e-05 | 0.1816602 | 3.40e-05 | 0.1816602 | 0.1865189 | 0.5035497 | 0.0010421 | FALSE | 0.6493394 | |||||||||||||||||||||||||
| cg06023262 | chr1 | 85230276 |
|
46769285 | TCCRAAATACTTTCCTTACTCTAATTTTAAATAATCCRACTAATAAAACC | II | NA | NA | NA | NA | NA | NA | OpenSea | AGAAATGGGGAAGTGCTAATGGACCTAATGAACCAAGCCTCCCAAGGAAGCGAGAGAGAG[CG]GTCCCATCAGCCGGATCATTTAAAACTAGAGCAAGGAAAGCACTTCGGAACAATATAGTA | CGGTCCCATCAGCCGGATCATTTAAAACTAGAGCAAGGAAAGCACTTCGG | TRUE | chr1:85229638-85230541 | 3 | 3.42e-05 | 0.1816602 | 3.42e-05 | 0.1816602 | 0.0493341 | 0.0352660 | 0.0000730 | FALSE | 2.7636917 | |||||||||||||||||||||||||||
| cg18774117 | chr6 | 19922172 |
|
43642285 | TCCTCTTTACTTAATAATCAATATACTTACATATCTATTTCCCTTACTCC | II | NA | NA | NA | NA | NA | NA | OpenSea | ATGTCGTCTCATCCTCTTTACTTGGTGATCAATGTGCTTGCATGTCTGTTTCCCTTGCTC[CG]TGTTGACGCTAGGTCAGACTTCACGTTAGGAACGGGTGGCCGGTGTGCCTGTTGAAAATG | CGGAGCAAGGGAAACAGACATGCAAGCACATTGATCACCAAGTAAAGAGG | chr6:19922065-19922375 | 3 | 3.42e-05 | 0.1816602 | 3.42e-05 | 0.1816602 | -0.0410520 | 0.0244221 | 0.0000505 | FALSE | 3.4747548 | ||||||||||||||||||||||||||||
| cg13659933 | chr2 | 65839377 |
|
51617561 | ATAAATACTTACTACTAATTACTATAATCACACTTCTTAATTCAACAAAC | II | NA | NA | NA | NA | NA | NA | OpenSea | TGACCTGCGTGAGATAGCTAGCGACCCATCCCACTGGGGAGATGGCGGGCAGCCGCCTGG[CG]CTTGTTGAATTAAGAAGTGTGACTACAGTAATTAGCAGCAAGTATCCACCACAGGATAGA | TGGATACTTGCTGCTAATTACTGTAGTCACACTTCTTAATTCAACAAGCG | TRUE | AC007389.3;AC074391.1 | ENST00000420724.1;ENST00000377977.3 | 3’UTR;5’UTR | AC007389.3;AC074391.1 | ENST00000420724.1;ENST00000377977.3 | 3’UTR;5’UTR | chr2:65839125-65839490 | 3 | TRUE | 3.46e-05 | 0.1816602 | 3.46e-05 | 0.1816602 | 0.1728582 | 0.4339020 | 0.0008980 | FALSE | 3.4181958 | ||||||||||||||||||||
| cg27119456 | chr10 | 42863173 |
|
29621965 | 79804968 | TATAACCAAACTAAACCAAAAAAAACTCAAATCCACAAACCTAAAAAACA | TATAACCGAACTAAACCAAAAAAAACTCGAATCCACAAACCTAAAAAACG | I | A | Red | NA | NA | NA | NA | NA | NA | chr10:42862953-42863216 | Island | CCAGCCGACATTTGTGGCCGAGCTGGGCCAGGAGGGACTCGGGTCCACAAACCTAGAAGA[CG]ACTGCAGGGAGGCCCAGTCACGCTACCGCCGCTTCGGCAGCGGAGCCTAGCCTGCCCCCC | TGTGGCCGAGCTGGGCCAGGAGGGACTCGGGTCCACAAACCTAGAAGACG | LOC441666 | NR_024380 | Body | 10:42182960-42183332 | chr10:42862925-42863315 | 3 | TRUE | 3.47e-05 | 0.1816602 | 3.47e-05 | 0.1816602 | -0.1121363 | 0.1827337 | 0.0003782 | FALSE | -3.2126202 | ||||||||||||||||||
| cg10808022 | chr15 | 90718002 |
|
31607578 | CAAAACCAAACAAAAACTACCCATAAAAACTAACTAACTACCRAAAACTC | II | NA | NA | NA | NA | NA | NA | OpenSea | CCGGGTGCCTGCAGAACCAGGCAAGAACTGCCCATGAAAGCTGGCTGGCTGCCGGGAACT[CG]TTGTCTTTCCATTTAAACAGACACTGGCTGTCTGTTGAGTTTCTGGAAACATCTGACCTT | CGAGTTCCCGGCAGCCAGCCAGCTTTCATGGGCAGTTCTTGCCTGGTTCT | TRUE | SEMA4B | ENST00000559322.1 | 5’UTR | chr15:90717700-90718155 | 3 | 3.49e-05 | 0.1816602 | 3.49e-05 | 0.1816602 | 0.0428237 | 0.0266719 | 0.0000552 | FALSE | 1.0279869 | ||||||||||||||||||||||||
| cg06299715 | chr10 | 94599267 |
|
73774915 | AAATAAATATTATAAACACTACTACTACCCTATCCTAAAACCATACTACC | II | NA | NA | rs17376654 | 0.021515 | rs17376654 | 0.021515 | OpenSea | AATGCATTGGGAATGGTTGCCTGAATCTTCATATTGAGGATGATCCTGATAAATTAGTGA[CG]GTAGTATGGTCCTAGGATAGGGTAGTAGCAGTGTTCATAACATTTATTTACCATATTCAC | CGGTAGTATGGTCCTAGGATAGGGTAGTAGCAGTGTTCATAACATTTATT | EXOC6 | NM_001013848 | Body | TRUE | 10:94598903-94599703 | Unclassified | chr10:94599245-94599510 | 3 | 3.59e-05 | 0.1816602 | 3.59e-05 | 0.1816602 | 0.0983733 | 0.1415247 | 0.0002929 | FALSE | 2.7286702 | ||||||||||||||||||||||
| cg23129543 | chr8 | 79818892 |
|
31804203 | TTCCAAATTTCACATTCATACTCAAATAAAAACTTCTCAAATACTATCCC | II | NA | NA | NA | NA | NA | NA | OpenSea | GAGTCACTGTGCCCGGCTCCAAGGCATAGAATTTTAATAATGTTTTGTGTTCTTCTGTAA[CG]GGACAGCACTTGAGAAGTTTTCATTTGAGCATGAATGTGAAACTTGGAACTGTAATATTG | CGGGACAGCACTTGAGAAGTTTTCATTTGAGCATGAATGTGAAACTTGGA | chr8:79818409-79819582 | 4 | 3.63e-05 | 0.1816602 | 3.63e-05 | 0.1816602 | -0.0423873 | 0.0263276 | 0.0000545 | FALSE | 3.1927388 | ||||||||||||||||||||||||||||
| cg11982292 | chr13 | 99957639 |
|
56708541 | TTCTCTCTACTATAATTAAAACCTACTAAAATTATTAAACAACCCTAAAC | II | NA | NA | NA | NA | NA | NA | OpenSea | TCTTGAGAAGGTGATAAACCCCCCAGACTGGAGAACACCACGCGTCCTCTACACAGGCCA[CG]TCCAGGGCTGCCTAACAACTCCAGCAGGTCTTAACCATAGCAGAGAGAAAAGTATCCCTG | TCTCTCTGCTATGGTTAAGACCTGCTGGAGTTGTTAGGCAGCCCTGGACG | GPR183;UBAC2;UBAC2;UBAC2;MIR548AN | NM_004951;NR_026644;NM_001144072;NM_177967;NR_039765 | 5’UTR;Body;Body;Body;Body | chr13:99957500-99957500 | GPR183 | ENST00000376414.4 | 5’UTR | GPR183;UBAC2;UBAC2;UBAC2 | ENST00000376414.4;ENST00000468067.1;ENST00000473091.1;ENST00000494576.1 | 5’UTR;5’UTR;5’UTR;5’UTR | chr13:99957500-99957710 | 3 | 3.66e-05 | 0.1816602 | 3.66e-05 | 0.1816602 | -0.0616390 | 0.0557547 | 0.0001154 | FALSE | 1.5577662 | ||||||||||||||||||
| cg18622950 | chr2 | 102758607 |
|
56640168 | AACTAATACATATAAAATAATACCAAACCCAAAACTAATACTACTCACRC | II | NA | NA | NA | NA | NA | NA | chr2:102758806-102759577 | N_Shore | GACACTTAAATTGCTTTTTTCATCCGGGCGCGTAACAGCAACAATGAAACCAGCAGATAA[CG]CGTGAGTAGTATCAGCTCTGGGCCTGGCACTATTTTATATGTATTAGCTCATTTTTTTTA | CGCGTGAGTAGTATCAGCTCTGGGCCTGGCACTATTTTATATGTATTAGC | IL1R1;IL1R1 | NM_000877;NM_001288706 | TSS1500;5’UTR | IL1R1;IL1R1;IL1R1;IL1R1 | ENST00000409288.1;ENST00000424272.1;ENST00000409589.1;ENST00000409329.1 | TSS1500;5’UTR;5’UTR;5’UTR | IL1R1;IL1R1;IL1R1;IL1R1;IL1R1;IL1R1;IL1R1;IL1R1 | ENST00000409288.1;ENST00000442590.1;ENST00000452403.1;ENST00000409929.1;ENST00000409589.1;ENST00000409329.1;ENST00000450319.1;ENST00000428279.1 | TSS1500;TSS200;5’UTR;5’UTR;5’UTR;5’UTR;5’UTR;5’UTR | chr2:102758067-102760576 | 6 | chr2:102758164-102760820 | 6 | 3.68e-05 | 0.1816602 | 3.68e-05 | 0.1816602 | 0.0487435 | 0.0349072 | 0.0000722 | FALSE | 3.2727395 | ||||||||||||||||
| cg10136325 | chr6 | 110406614 |
|
61728592 | TATTAAAAATCTACAATCTCTATTAATCACTTAAACCCTCTACCCTATCC | II | NA | NA | NA | NA | NA | NA | OpenSea | GAGTGGTCAGTAGTGGCCTTATGAGGAGTGTAGTAATCCATGGTTATATCTGAGTAGGGA[CG]GATAGGGCAGAGGGTTCAAGTGACTAACAGAGACTGTAGATCCCTAACAGTGGATTCTCT | CGGATAGGGCAGAGGGTTCAAGTGACTAACAGAGACTGTAGATCCCTAAC | chr6:110406560-110406750 | 3 | 3.71e-05 | 0.1816602 | 3.71e-05 | 0.1816602 | 0.0564079 | 0.0468137 | 0.0000969 | FALSE | 3.6246050 | ||||||||||||||||||||||||||||
| cg22996185 | chr6 | 152806950 |
|
77800329 | AACCTTATAAATAAAATTCTAATTCACTATCTCCCCCCAATATTCTTCAC | II | NA | NA | NA | NA | NA | NA | OpenSea | AAAGTTAGCAGATAACACAACTAAAAGAATTTCAAAATTATAAACAAACATGTAAATTCA[CG]TGAAGAACACTGGGGGGAGATAGTGAACTAGAATTTTATCTACAAGGTTTTCTTTCATTT | CGTGAAGAACACTGGGGGGAGATAGTGAACTAGAATTTTATCTACAAGGT | SYNE1;SYNE1 | NM_182961;NM_033071 | Body;Body | SYNE1 | ENST00000461872.2 | 3’UTR | chr6:152806840-152807095 | 3 | 3.71e-05 | 0.1816602 | 3.71e-05 | 0.1816602 | 0.0886792 | 0.1157187 | 0.0002395 | FALSE | -2.8959013 | ||||||||||||||||||||||
| cg18544413 | chr12 | 65019442 |
|
20701104 | CTAAAAACAACAACAAAATCTACCTTTACAACACRTTATACAATTTACAC | II | rs114053935 | 0.010860 | NA | NA | NA | NA | OpenSea | TAGGAACTTAGTCACTGTCGTCTTTCTGGTTTTCATGAGATCAAATCAAATAAGGTAATA[CG]TGCAAACTGTATAACGTGCTGCAAAGGCAGACTCTGCTGCTGTCCTTAGAGTCCAGTTCC | CGTGCAAACTGTATAACGTGCTGCAAAGGCAGACTCTGCTGCTGTCCTTA | RASSF3;RASSF3 | NR_040718;NM_178169 | Body;Body | chr12:65019058-65019058 | TRUE | RASSF3 | ENST00000541539.1 | 5’UTR | RASSF3 | ENST00000541539.1 | 5’UTR | chr12:65018965-65019815 | 3 | 3.72e-05 | 0.1816602 | 3.72e-05 | 0.1816602 | 0.0529993 | 0.0413408 | 0.0000856 | FALSE | -3.6121245 | |||||||||||||||||
| cg26466274 | chr2 | 177864936 |
|
77699413 | TCATAAAAACAAACRCATTATACTAACTAACACTACRTTACTATCAATAC | II | NA | NA | rs6433631 | 0.096307 | rs6433631 | 0.096307 | OpenSea | CTACGGTGAATTCATGAAGACAGACGCATTATGCTGGCTGGCACTGCGTTGCTATCAATA[CG]TAAGGAGACAATGGTGTTCTTTCCTTACATTTAAATGCTAAACATTACAGAGTACCTCAC | CATGAAGACAGACGCATTATGCTGGCTGGCACTGCGTTGCTATCAATACG | TRUE | AC079305.11;AC079305.11 | ENST00000452002.1;ENST00000441205.1 | 3’UTR;3’UTR | AC079305.11;AC079305.11 | ENST00000452002.1;ENST00000441205.1 | 3’UTR;3’UTR | chr2:177864844-177865719 | 6 | TRUE | 3.72e-05 | 0.1816602 | 3.72e-05 | 0.1816602 | 0.0794148 | 0.0928303 | 0.0001921 | FALSE | 0.6936012 | ||||||||||||||||||||
| cg15758175 | chr17 | 73522598 |
|
53779118 | CTAATTAAATCAATTCTCCCCACAACCAAAACCCAACRTATCCACCAATC | II | NA | NA | NA | NA | NA | NA | chr17:73520956-73522540 | S_Shore | GCGAGAAGTGGAAAATTCTATCTTGCCAAAGAAAGTGTGTCTTAGTTTGTTCCGGCTGGA[CG]ATTGGTGGACACGCTGGGCCTTGGCTGTGGGGAGAACTGACCTAACCAGGGGAGCTGTAG | TGGTTAGGTCAGTTCTCCCCACAGCCAAGGCCCAGCGTGTCCACCAATCG | LLGL2;LLGL2;LLGL2 | NM_001015002;NM_004524;NM_001031803 | 5’UTR;5’UTR;5’UTR | LLGL2 | ENST00000375227.3 | 5’UTR | LLGL2 | ENST00000375227.3 | 5’UTR | chr17:73522260-73522975 | 3 | TRUE | 3.73e-05 | 0.1816602 | 3.73e-05 | 0.1816602 | 0.0453335 | 0.0302671 | 0.0000626 | FALSE | -2.1945850 | |||||||||||||||||
| cg27137258 | chr16 | 2892782 |
|
8732275 | 17771246 | ACTAAACTTCCAATAAACTCCAAAAAAATTTCCAACAAACTTCCTATACA | GCTAAACTTCCGATAAACTCCAAAAAAATTTCCGACGAACTTCCTATACG | I | A | Red | rs8060332 | 0.381352 | NA | NA | NA | NA | chr16:2892579-2892810 | Island | TGAGGGTGGTTCGCTAAACTTCCGGTGGGCTCCAAGAGAGTTTCCGGCGGACTTCCTGTG[CG]ATCGGGCGGGGTTCCGGTCAGTATGCGAGTCCTGTGAGCATCATCTCAGCCTGGCCTCAG | CGCACAGGAAGTCCGCCGGAAACTCTCTTGGAGCCCACCGGAAGTTTAGC | TMPRSS8 | NR_026864 | TSS200 | 16:2832519-2832800 | 16:2892264-2893036 | Promoter_Associated | PRSS30P | ENST00000475030.1 | TSS200 | PRSS30P;PRSS30P;PRSS30P;PRSS30P;PRSS30P | ENST00000506153.1;ENST00000476276.1;ENST00000489864.1;ENST00000475030.1;ENST00000390681.5 | TSS1500;TSS200;TSS1500;TSS200;TSS200 | chr16:2892485-2892835 | 3 | TRUE | 3.73e-05 | 0.1816602 | 3.73e-05 | 0.1816602 | -0.1186255 | 0.2072788 | 0.0004290 | FALSE | -3.7002688 | ||||||||||
| cg24039962 | chr1 | 172507360 |
|
9747848 | AAAAAACCAACATCTTAATTTAAATATCAACTCTCTTCTAATAAAACCAC | II | NA | NA | NA | NA | NA | NA | OpenSea | TTGCTGTGGAGGGTAAAGTGGAATGTAGGGGACGTACTTTGGAGGCACGAGGTCCTAAGT[CG]TGGTCCCACTAGAAGAGAGTTGATATCTAAATCAAGATGTTGGCCTTTTTGTCCTTAGTA | CGTGGTCCCACTAGAAGAGAGTTGATATCTAAATCAAGATGTTGGCCTTT | C1orf9;C1orf9 | NM_016227;NM_014283 | Body;Body | TRUE | chr1:172507060-172507370 | 3 | TRUE | 3.74e-05 | 0.1816602 | 3.74e-05 | 0.1816602 | -0.0612716 | 0.0553074 | 0.0001145 | FALSE | 2.9803565 | |||||||||||||||||||||||
| cg22853855 | chr19 | 34111400 |
|
99662560 | AAACTAAAATAAACTTTATTCTAAAATTCCCTTTCCAAAACTTTAAACTC | II | NA | NA | rs73029337 | 0.119854 | rs73029337 | 0.119854 | chr19:34112279-34114353 | N_Shore | CATGCGTGCAGCCAGTGGAGTGTGCCTGGGTCCCAGCGCAGCCCCAGGCCTGGGTCACTC[CG]AGCCTAAAGTCCTGGAAAGGGAACCCCAGAACAAAGCCTATCCCAGTTTGGAATCATCAC | AACTGGGATAGGCTTTGTTCTGGGGTTCCCTTTCCAGGACTTTAGGCTCG | CHST8;CHST8 | NM_001127895;NM_001127896 | TSS1500;TSS1500 | CHST8;CHST8 | ENST00000434302.1;ENST00000438847.1 | TSS1500;TSS1500 | CHST8;CHST8 | ENST00000434302.1;ENST00000438847.1 | TSS1500;TSS1500 | chr19:34111345-34111595 | 3 | TRUE | 3.86e-05 | 0.1816602 | 3.86e-05 | 0.1816602 | 0.1198060 | 0.2127368 | 0.0004403 | FALSE | 1.3690465 | |||||||||||||||||
| cg03637906 | chr16 | 2955295 |
|
88723328 | CCCTAAATAATAAAAAAACCRCAATAAACCCAAAACACRATACTAAAACC | II | NA | NA | rs7188530 | 0.081029 | NA | NA | chr16:2954191-2955514 | Island | ACCGGGACGACCCCTGGGTGATAGGAGAGCCGCAGTGAGCCCAGGGCACGGTGCTGGGGC[CG]CTCTGGCCGCCGCCGCCAAGCGTCACAGGAAAACAGCAACCAGGACCCCGCGGCTCCTGG | CGGCCCCAGCACCGTGCCCTGGGCTCACTGCGGCTCTCCTATCACCCAGG | 16:2894121-2895937 | 16:2955235-2956168 | Promoter_Associated | chr16:2953736-2956271 | 6 | chr16:2953884-2956403 | 6 | TRUE | 3.86e-05 | 0.1816602 | 3.86e-05 | 0.1816602 | -0.0836822 | 0.1037994 | 0.0002148 | FALSE | -3.6397057 | |||||||||||||||||||||
| cg16106427 | chr10 | 134045609 |
|
7691150 | AAAATAAACTACTAAATTAACAAATACTCCRATAAAAACRCAACRTAAAC | II | NA | NA | NA | NA | NA | NA | chr10:134041499-134041784 | S_Shelf | GATAACACCCTGCAGACTCTGAGCACCTGCGGCCACGCCTGCAGGCAGCAGCCTCACCTG[CG]CTCACGCTGCGCCCTCACCGGAGCACCTGCCAACCCAGCAGCCCACTTCCCCTAATCTCC | AAGTGGGCTGCTGGGTTGGCAGGTGCTCCGGTGAGGGCGCAGCGTGAGCG | STK32C | NM_173575 | Body | 10:133895479-133895620 | STK32C;STK32C | ENST00000478542.1;ENST00000368622.1 | 3’UTR;5’UTR | STK32C;STK32C | ENST00000478542.1;ENST00000368622.1 | 3’UTR;5’UTR | chr10:134045520-134046855 | 3 | TRUE | 3.86e-05 | 0.1816602 | 3.86e-05 | 0.1816602 | -0.1029446 | 0.1570894 | 0.0003251 | FALSE | 0.0797349 | ||||||||||||||||
| cg07872987 | chr3 | 111260980 |
|
48667977 | ATCTACRTTTCATTTCCTAAAAACTTACCAAATAATAAACAAACCCAAAC | II | rs2276873 | 0.000832 | NA | NA | NA | NA | OpenSea | ATTACTTTCCTGTCTACGTTTCATTTCCTGGGGGCTTGCCAAGTGATAAACAGACCCAGG[CG]TGTGTGGTAGAGTTCGGGTTTTTTAGCACGAAGTGGGTGGCTGGAGTTTGCTTGAAAACA | CGCCTGGGTCTGTTTATCACTTGGCAAGCCCCCAGGAAATGAAACGTAGA | CD96;CD96;CD96;CD96 | NM_005816;NM_198196;NM_005816;NM_198196 | 5’UTR;5’UTR;1stExon;1stExon | low-CpG:112743660-112743754 | 3:111260756-111261223 | Promoter_Associated | CD96;CD96;CD96;CD96;CD96;RP11-615J4.1 | ENST00000438817.2;ENST00000352690.3;ENST00000352690.3;ENST00000283285.5;ENST00000283285.5;ENST00000460744.1 | TSS200;5’UTR;1stExon;5’UTR;1stExon;5’UTR | CD96;CD96;CD96;CD96;CD96;CD96;CD96;RP11-615J4.1 | ENST00000438817.2;ENST00000488054.1;ENST00000494798.1;ENST00000352690.3;ENST00000352690.3;ENST00000283285.5;ENST00000283285.5;ENST00000460744.1 | TSS200;TSS200;TSS200;5’UTR;1stExon;5’UTR;1stExon;5’UTR | chr3:111260740-111261150 | 3 | 3.88e-05 | 0.1816602 | 3.88e-05 | 0.1816602 | 0.0431723 | 0.0276513 | 0.0000572 | FALSE | -3.9028242 | ||||||||||||||||
| cg16961769 | chr10 | 123274709 |
|
36637170 | TAATCAACTTATACACAACCRACTAACTACTAAAATCTAACTTCTTAATC | II | NA | NA | NA | NA | NA | NA | OpenSea | GGGGATACGTTTGGTCAGCTTGTGCACAGCCGGCTGGCTGCTGAAGTCTGGCTTCTTGGT[CG]TGTTCTTCATTCGGCACAGGATGACTGTTACCACCATACAGGCGATTAAGAAGACCCCTA | CGACCAAGAAGCCAGACTTCAGCAGCCAGCCGGCTGTGCACAAGCTGACC | FGFR2;FGFR2;FGFR2;FGFR2;FGFR2;FGFR2;FGFR2;FGFR2;FGFR2;FGFR2;FGFR2 | NR_073009;NM_001144915;NM_001144916;NM_023029;NM_001144914;NM_001144917;NM_000141;NM_022970;NM_001144918;NM_001144913;NM_001144919 | Body;Body;Body;Body;Body;Body;Body;Body;Body;Body;Body | FGFR2 | ENST00000478859.1 | 3’UTR | FGFR2;FGFR2 | ENST00000429361.1;ENST00000478859.1 | TSS200;3’UTR | chr10:123274565-123274810 | 3 | 3.89e-05 | 0.1816602 | 3.89e-05 | 0.1816602 | 0.0806451 | 0.0965186 | 0.0001997 | FALSE | 2.7121667 | |||||||||||||||||||
| cg03964091 | chr22 | 49062324 |
|
41676564 | AAATCCACTAATTACAATTAATAAACCAATACTAAAACCCATAACCAAAC | II | NA | NA | NA | NA | NA | NA | chr22:49063538-49063900 | N_Shore | TCTTATTGGCAAGGTCCACTGGTTACAATTGATGAGCCAATACTGAGGCCCATGACCAGG[CG]TTACTGAGGCCCGTGACCAGGCAATACTGAGACCCGTGACCAGTCAGTACGGAGGCCCGT | CGCCTGGTCATGGGCCTCAGTATTGGCTCATCAATTGTAACCAGTGGACC | FAM19A5;FAM19A5 | NM_001082967;NM_015381 | Body;Body | FAM19A5 | ENST00000473898.1 | 5’UTR | FAM19A5 | ENST00000473898.1 | 5’UTR | chr22:49061534-49063120 | 6 | 3.89e-05 | 0.1816602 | 3.89e-05 | 0.1816602 | 0.0580842 | 0.0500754 | 0.0001036 | FALSE | 0.3310588 | ||||||||||||||||||
| cg09209679 | chr22 | 49051077 |
|
14721975 | AAAACTTACATTCACTTTTCTAATAACTAAAACACACAAAAACTTTTCCC | II | NA | NA | rs4925395 | 0.197451 | NA | NA | OpenSea | GCAAACCGTGTCTGAAGGGGCTGGCAGGATGCAGAGTGGACAGCAGCCCTCACTCTTCTG[CG]GGAAAAGCTTTTGTGTGCTTCAGTCATTAGAAAAGTGAATGTAAGTCCTTAAGTACTTGG | CGGGAAAAGCTTTTGTGTGCTTCAGTCATTAGAAAAGTGAATGTAAGTCC | FAM19A5;FAM19A5 | NM_001082967;NM_015381 | Body;Body | FAM19A5 | ENST00000473898.1 | 5’UTR | FAM19A5 | ENST00000473898.1 | 5’UTR | chr22:49045979-49051090 | 6 | 3.89e-05 | 0.1816602 | 3.89e-05 | 0.1816602 | 0.2260844 | 0.7588301 | 0.0015704 | FALSE | 1.5606217 | |||||||||||||||||||
| cg21132420 | chr22 | 50099606 |
|
88745118 | TTCCCCCATTTTCTCCCTAAATTTTTAAATCTCCTAAACTATAAACCAAC | II | rs4824083 | 0.484667 | NA | NA | NA | NA | chr22:50098068-50098318 | S_Shore | GCACTGGCGCGGGCATGGCAGCTCGGCCTCAAGCTCCCCACAGCCTCCACTCAGAGCACT[CG]CTGGCTCACAGCCCAGGAGATCTAAAAACTCAGGGAGAAAATGGGGGAAACAGAAGACAG | CGCTGGCTCACAGCCCAGGAGATCTAAAAACTCAGGGAGAAAATGGGGGA | 22:50099443-50099775 | Unclassified_Cell_type_specific | chr22:50099209-50099846 | 6 | TRUE | 3.93e-05 | 0.1816602 | 3.93e-05 | 0.1816602 | -0.0473897 | 0.0333935 | 0.0000691 | FALSE | -2.1799701 | ||||||||||||||||||||||||
| cg04659582 | chr2 | 231276073 |
|
54601931 | CCTATAAAATCRTTCTATTACAATCCAACAATTAAAACTCAAAATAAAAC | II | NA | NA | NA | NA | NA | NA | OpenSea | AACATAGTGAGCCTGTAGGGTCGTTCTGTTGCAGTCCAGCAGTTGGGGCTCAAAGTGAAA[CG]AAAGGGAAGGTGAAGCCCCCTCTCCCTCACTCAGGGAGACTGGGTTTCGGGGTGGGGGGC | CTGTAGGGTCGTTCTGTTGCAGTCCAGCAGTTGGGGCTCAAAGTGAAACG | TRUE | 2:231275785-231277112 | Promoter_Associated | chr2:231275885-231277195 | 3 | TRUE | 3.95e-05 | 0.1816602 | 3.95e-05 | 0.1816602 | 0.0458821 | 0.0313404 | 0.0000649 | FALSE | -3.8971630 | ||||||||||||||||||||||||
| cg06697310 | chr19 | 35141578 |
|
83756539 | TCACAAAAAAATCTAAATTCCAATAACTTCATTACAAAACTCAACCAAAC | II | NA | NA | rs35997355 | 0.284215 | NA | NA | OpenSea | AATATCTCCTATCACAGAAAAGTCTAGATTCCAATGGCTTCATTGCAGAACTCAACCAAA[CG]TTTAGGAAGAAATAACAGCAATTCTTCCTAAACTCTTCCTGAAAATTGAAGAGTACGGAA | CGTTTGGTTGAGTTCTGCAATGAAGCCATTGGAATCTAGACTTTTCTGTG | 3.97e-05 | 0.1816602 | 3.97e-05 | 0.1816602 | 0.1275312 | 0.2423289 | 0.0005015 | FALSE | 1.2705958 | ||||||||||||||||||||||||||||||
| cg21838924 | chr7 | 73245103 |
|
26673851 | ACCTATAAACATCCAACTATCCCTAAACTATAATTCAATATCTATCTCCC | II | NA | NA | rs4640941 | 0.430920 | NA | NA | chr7:73245434-73246045 | N_Shore | CCCTGGCCTTAACCTGTGAACATCCAGCTGTCCCTGGGCTGTGATTCAGTGTCTGTCTCC[CG]GGTGACCTCAGCATGGGCTTTGAGGAAGGGGAGAGAGTAGTTTCTTCTGAGACTGGATAG | CCTGTGAACATCCAGCTGTCCCTGGGCTGTGATTCAGTGTCTGTCTCCCG | CLDN4 | NM_001305 | TSS200 | CLDN4;CLDN4;CLDN4;CLDN4 | ENST00000435050.1;ENST00000431918.1;ENST00000543176.1;ENST00000340958.2 | 5’UTR;5’UTR;TSS1500;TSS200 | CLDN4;CLDN4;CLDN4;CLDN4 | ENST00000435050.1;ENST00000431918.1;ENST00000543176.1;ENST00000340958.2 | 5’UTR;5’UTR;TSS1500;TSS200 | chr7:73245025-73245535 | 3 | TRUE | 3.98e-05 | 0.1816602 | 3.98e-05 | 0.1816602 | 0.1090587 | 0.1773268 | 0.0003670 | FALSE | 2.4061913 | |||||||||||||||||
| cg21997403 | chr17 | 80436296 |
|
13704833 | TAAAAAAAATTAAACAAACATATAACTACTCTCCCCTAAACRATAACTAC | II | NA | NA | rs77949156 | 0.049479 | rs77949156 | 0.049479 | OpenSea | TTTCTCGCCGGTGAGAGAAGTTGGGCAAGCATGTGGCTGCTCTCCCCTGAGCGGTAGCTG[CG]TGTCCTGGCTGTAAGGACGCTGTAGCTGGCCAGGCGATTTTGCACGGTGCAGCCTGGGCC | CGCAGCTACCGCTCAGGGGAGAGCAGCCACATGCTTGCCCAACTTCTCTC | NARF;NARF;NARF;NARF | NM_001038618;NM_001083608;NM_031968;NM_012336 | Body;Body;Body;Body | 17:78029576-78029824 | chr17:80435828-80436427 | 3 | TRUE | 3.99e-05 | 0.1816602 | 3.99e-05 | 0.1816602 | -0.1144923 | 0.1954882 | 0.0004046 | FALSE | 2.6496277 | |||||||||||||||||||||||
| cg24702069 | chr13 | 109352806 |
|
22741154 | AACAATATTTTATAATCCTTTAACRATTATAACCACATCCTCTCTTCCCC | II | rs9514881 | 0.081520 | NA | NA | NA | NA | OpenSea | ACTTCGGCAAGAGCAGTGTTTTGTGGTCCTTTGACGATTGTAGCCACATCCTCTCTTCCC[CG]GCTCTATAATAGCCCTAAAACCCAGCAGCCTTGCAATCTTGGCAGCCACGAAAACCAGCA | CGGGGAAGAGAGGATGTGGCTACAATCGTCAAAGGACCACAAAACACTGC | MYO16 | NM_015011 | Body | DMR | chr13:109352780-109353095 | 3 | TRUE | 4.00e-05 | 0.1816602 | 4.00e-05 | 0.1816602 | 0.0929608 | 0.1289654 | 0.0002669 | FALSE | -1.1299854 | |||||||||||||||||||||||
| cg15049005 | chr15 | 66947167 |
|
9632897 | AAAACTAAAAACAATAATCRACCTACTCAAACAAACCAAAAATACCRAAC | II | NA | NA | NA | NA | NA | NA | chr15:66947360-66947574 | N_Shore | GTTCCCAGGGACCCCTGCCCTCCCCAAACTGGAGCACCAGGCGCGGGACAAAGGAGGGGG[CG]CCCGGCATCCCTGGCCTGTCTGAGTAGGTCGACTACTGCCCCCAGCCTCTCTCTGGGGCG | CGCCCGGCATCCCTGGCCTGTCTGAGTAGGTCGACTACTGCCCCCAGCCT | LINC01169 | NR_110372 | Body | 15:64733992-64734623 | 15:66947084-66947651 | Unclassified_Cell_type_specific | chr15:66946900-66947695 | 3 | 4.01e-05 | 0.1816602 | 4.01e-05 | 0.1816602 | -0.1043714 | 0.1626580 | 0.0003366 | FALSE | 1.9979825 | |||||||||||||||||||||
| cg23916205 | chr8 | 11614368 |
|
3618164 | ACTACTATCCCCRACAAATATAAATAAAACCATTAACTTACACCCATCCC | II | rs3729854 | 0.262924 | NA | NA | NA | NA | OpenSea | TAAGGACCTCTGCTGCTGTCCCCGGCAAATGTAGATAAAGCCATTAGCTTGCACCCATCC[CG]GCTGTCTCGCAGGCTGCCGGCTGTTCGTTTGTCCCTGCCGCTGATTTGGGTGTGCTGACT | CTGCTGTCCCCGGCAAATGTAGATAAAGCCATTAGCTTGCACCCATCCCG | GATA4 | NM_002052 | Body | 8:11651739-11652008 | GATA4;GATA4 | ENST00000526021.1;ENST00000526021.1 | 1stExon;5’UTR | chr8:11614145-11614615 | 3 | TRUE | 4.02e-05 | 0.1816602 | 4.02e-05 | 0.1816602 | 0.0477238 | 0.0340197 | 0.0000704 | FALSE | 3.3366748 | ||||||||||||||||||||
| cg24975581 | chr12 | 121128268 |
|
66617913 | AAAACTATTTCCTCTTCAAAAAAAAATACCTACTAAAATCRCAAATCCTC | II | NA | NA | NA | NA | NA | NA | chr12:121124111-121125479 | S_Shelf | TGAGTTTAGGGAAGGCTATTTCCTCTTCAGAGAAAGATACCTGCTAAAGTCGCAGGTCCT[CG]AGAAACTTGCTTTACGTCTCTGAGCCTTGTTTTCCTTTTCAAAAAATCTCTCATGCTTTA | CGAGGACCTGCGACTTTAGCAGGTATCTTTCTCTGAAGAGGAAATAGCCT | MLEC | NM_014730 | Body | TRUE | 4.04e-05 | 0.1816602 | 4.04e-05 | 0.1816602 | -0.0397788 | 0.0236582 | 0.0000490 | FALSE | 3.2310829 | |||||||||||||||||||||||||
| cg14457074 | chr5 | 180408785 |
|
18748138 | CAAAAATATCTATCTAATTCTAAACCTTCCCAAACAAAAACCAAAAACCC | II | rs74821602 | 0.105698 | NA | NA | NA | NA | OpenSea | TAAGAGGAAGCCAGGGGTGTCTGTCTGGTTCTGGGCCTTCCCAGACAAAAGCCAGAGACC[CG]GAGCCTCTTTCTGAGAAGGAACCGGGCGTCCCCAAGATTTCCTCTAGCCGAGTCCCCTGG | CGGGTCTCTGGCTTTTGTCTGGGAAGGCCCAGAACCAGACAGACACCCCT | 5:180341162-180341858 | chr5:180408385-180408915 | 3 | TRUE | 4.05e-05 | 0.1816602 | 4.05e-05 | 0.1816602 | 0.1005126 | 0.1511029 | 0.0003127 | FALSE | -1.2086877 | ||||||||||||||||||||||||||
| cg14168115 | chr3 | 121739357 |
|
44767551 | CTATCCCCAAAATTAAAACTTTATAATCCTAAACAAACCTCTAAACTCAC | II | NA | NA | NA | NA | NA | NA | OpenSea | TTCCCCTCCAAGTGTTGGAGTCAAACAGTTGAAATATCAATTTCTCATCTATAAAGTGAA[CG]TGAGTTTAGAGGTTTGCTTAGGATTACAAAGTCTTAATTCTGGGGATAGAATACCCAGGG | CGTGAGTTTAGAGGTTTGCTTAGGATTACAAAGTCTTAATTCTGGGGATA | ILDR1;ILDR1;ILDR1 | NM_001199799;NM_001199800;NM_175924 | Body;Body;Body | ILDR1 | ENST00000460554.1 | 3’UTR | ILDR1 | ENST00000460554.1 | 3’UTR | chr3:121739306-121739828 | 5 | chr3:121738273-121741843 | 6 | 4.08e-05 | 0.1816602 | 4.08e-05 | 0.1816602 | -0.0486182 | 0.0354076 | 0.0000733 | FALSE | 3.2132634 | |||||||||||||||||
| cg14380863 | chr10 | 36793998 |
|
86709263 | CACTCTAAAAATTAATTATATTCTTCCCCACATAAAACCTATTTCCTAAC | II | NA | NA | rs12240752 | 0.108969 | rs12240752 | 0.108969 | OpenSea | GGGAGAGTGTACACTCTGGAAATTGATTATGTTCTTCCCCACATAGAGCCTGTTTCCTGG[CG]CACCATCTAATGGGGATGTCCCGGGGGAGAAGCTAAACATGCACTTTCCTGAAACTTGGA | CGCCAGGAAACAGGCTCTATGTGGGGAAGAACATAATCAATTTCCAGAGT | chr10:36793750-36794014 | 6 | chr10:36793676-36794300 | 6 | 4.14e-05 | 0.1816602 | 4.14e-05 | 0.1816602 | 0.1711132 | 0.4396910 | 0.0009100 | FALSE | 2.2371294 | ||||||||||||||||||||||||||
| cg25397663 | chr4 | 124622 |
|
81740584 | ACTAAAAACAAAAAACTAAACRAAAACTCCATTCACAAACTCCTCCCACC | II | rs116009033 | 0.011285 | NA | NA | NA | NA | chr4:124332-124841 | Island | GTGCAGGGCAGGGCGTCCCAAGGCTGTGGAGGCCTCATCGGAACCGGCGGGAAATGGCGG[CG]GTGGGAGGAGTCTGTGAATGGAGTTCCCGCTCAGCCCTCTGTCCTCAGTCCCCTCCGGTG | CTGAGGACAGAGGGCTGAGCGGGAACTCCATTCACAGACTCCTCCCACCG | ZNF718 | NM_001039127 | Body | DMR | 4:114333-115413 | 4:124043-125022 | Unclassified | ZNF718;ZNF718;ZNF718;ZNF718;ZNF718;ZNF718 | ENST00000511079.1;ENST00000513304.1;ENST00000513304.1;ENST00000513889.1;ENST00000511079.1;ENST00000510175.1 | 1stExon;1stExon;5’UTR;5’UTR;5’UTR;5’UTR | ZNF718;ZNF718;ZNF718;ZNF718;ZNF718;ZNF718 | ENST00000511079.1;ENST00000513304.1;ENST00000513304.1;ENST00000513889.1;ENST00000511079.1;ENST00000510175.1 | 1stExon;1stExon;5’UTR;5’UTR;5’UTR;5’UTR | chr4:124500-124955 | 3 | TRUE | 4.15e-05 | 0.1816602 | 4.15e-05 | 0.1816602 | 0.0611544 | 0.0561909 | 0.0001163 | FALSE | -2.6101323 | |||||||||||||
| cg14208041 | chr15 | 40080369 |
|
2792549 | ACATAACACCTTCCCCCTACAAATAACTCTAAATATTATAACATACCTTC | II | rs78935850 | 0.011729 | NA | NA | NA | NA | OpenSea | AGCTACATGTTTCTGGCCTAGAGGGTTGTTTTTAAAGATAGTAAAGTAAATCAATGAAAA[CG]AAGGTATGTTATAATATCCAGAGTCATTTGCAGGGGGAAGGTGTCATGTCAAGTGGGCCC | CGAAGGTATGTTATAATATCCAGAGTCATTTGCAGGGGGAAGGTGTCATG | TRUE | RP11-37C7.1 | ENST00000558616.1 | 3’UTR | RP11-37C7.1 | ENST00000558616.1 | 3’UTR | chr15:40080185-40080670 | 3 | TRUE | 4.15e-05 | 0.1816602 | 4.15e-05 | 0.1816602 | -0.0464979 | 0.0324920 | 0.0000672 | FALSE | 2.1834984 | ||||||||||||||||||||
| cg09712682 | chr16 | 10647275 |
|
64784125 | ACCRAAACCTAAATAAATACACTCCACCAATCCAAAAAACRAACAATAAC | II | NA | NA | NA | NA | NA | NA | OpenSea | AGTAACACTCTCTGCCTCGTCCCGCCCCTCACTCATCTCTTCACACCTGATTGGAGGAAA[CG]CCACTGTCCGCTTTCTGGATTGGTGGAGTGCATTTATTCAGGCCCCGGTGCAGTGCTTTG | CGCCACTGTCCGCTTTCTGGATTGGTGGAGTGCATTTATTCAGGCCCCGG | EMP2 | NM_001424 | 5’UTR | 16:10554573-10554846 | 16:10646885-10647444 | Unclassified | EMP2;EMP2 | ENST00000536829.1;ENST00000359543.3 | 5’UTR;5’UTR | EMP2;EMP2;EMP2 | ENST00000342147.4;ENST00000536829.1;ENST00000359543.3 | 3’UTR;5’UTR;5’UTR | chr16:10646685-10647455 | 3 | TRUE | 4.16e-05 | 0.1816602 | 4.16e-05 | 0.1816602 | 0.0897247 | 0.1210271 | 0.0002505 | FALSE | -0.7310128 | |||||||||||||||
| cg00790653 | chr7 | 20638869 |
|
47761573 | TAACTTCTAAAAAACTTAAAATCRAATACCAAATCTTCCCATAAAATCAC | II | NA | NA | NA | NA | NA | NA | OpenSea | TCTGTGGGCTTTGGCTTCTGAGGGACTTGGGATCGGATGCCAGGTCTTCCCATAAAGTCA[CG]TGATCGTTATGACAGACTGACGTCTCTGGGGCGCCATCTTCGCATCCCAAACATTGAAGG | CGTGACTTTATGGGAAGACCTGGCATCCGATCCCAAGTCCCTCAGAAGCC | chr7:20638480-20638910 | 3 | 4.19e-05 | 0.1816602 | 4.19e-05 | 0.1816602 | 0.0524335 | 0.0413809 | 0.0000856 | FALSE | -4.3492918 | ||||||||||||||||||||||||||||
| cg11615395 | chr4 | 140925869 |
|
59718843 | 67657847 | AAAAAAACAATAACAACTCCAAAAAAAACACAACACTCACAAAACTAACA | AAAAAAACAATAACGACTCCAAAAAAAACGCAACGCTCACGAAACTAACG | I | A | Red | NA | NA | rs1877075 | 0.228310 | NA | NA | OpenSea | CATGAGACTCGCAGGGAGACAATGACGGCTCCAGGAAAAACGCAGCGCTCACGGGGCTGG[CG]AGGGAGCCTGGCGCAGCTCCCTTCCCAGACCCGCTCTCCCTGCCAGCCCAGGGCTCCCAG | CGCCAGCCCCGTGAGCGCTGCGTTTTTCCTGGAGCCGTCATTGTCTCCCT | MAML3 | NM_018717 | Body | TRUE | chr4:140925700-140926035 | 3 | TRUE | 4.19e-05 | 0.1816602 | 4.19e-05 | 0.1816602 | 0.0559312 | 0.0470886 | 0.0000975 | FALSE | 1.6637781 | |||||||||||||||||||
| cg13569285 | chr15 | 91384161 |
|
92646254 | AAAAACCAACACTAAACAAAAACCACTACTATATTTAATAAATTCACCTC | II | NA | NA | NA | NA | NA | NA | OpenSea | CAAGGCTGTGAATGTCCCAACTCACTTCTGTTCTTGGTGAGTTTTGCTTGTGTTTGTGAA[CG]AGGTGAATTCATTAAACACAGCAGTGGCCCCTGCCCAGTGCTGGCTCCCTACAATGACCA | CGAGGTGAATTCATTAAACACAGCAGTGGCCCCTGCCCAGTGCTGGCTCC | CTD-3094K11.1 | ENST00000558221.1 | 5’UTR | CTD-3094K11.1 | ENST00000558221.1 | 5’UTR | chr15:91383720-91384255 | 3 | 4.22e-05 | 0.1816602 | 4.22e-05 | 0.1816602 | -0.0584057 | 0.0514224 | 0.0001064 | FALSE | 2.2276974 | ||||||||||||||||||||||
| cg02901828 | chr1 | 49513719 |
|
28715599 | ATACAATTAAATAAAACAAACTAATAACATACACRAATCCCAAAATTCCC | II | rs114156506 | 0.013901 | NA | NA | NA | NA | OpenSea | TGGTATTGAAGATGCAGTTAAGTGAGGCAGGCTGGTGGCATACACGAGTCCCAGGGTTCC[CG]ATTTGTATTTGGGGAGAATGTCTGTGAAAATGGCCTTGATGTTTCCAGCCAAAGGTCTGT | CGGGAACCCTGGGACTCGTGTATGCCACCAGCCTGCCTCACTTAACTGCA | AGBL4 | NM_032785 | Body | RP11-141A19.1 | ENST00000456002.1 | TSS1500 | RP11-141A19.1 | ENST00000456002.1 | TSS1500 | chr1:49513549-49514595 | 3 | 4.24e-05 | 0.1816602 | 4.24e-05 | 0.1816602 | -0.0477780 | 0.0344412 | 0.0000713 | FALSE | 2.2255798 | |||||||||||||||||||
| cg03873281 | chr5 | 131608955 |
|
90722430 | TACRATAACACAAAATTAAAAACAACACAAATATACRTTACTCTAAACTC | II | NA | NA | NA | NA | NA | NA | chr5:131607018-131607889 | S_Shore | ACCCTCTAGTTTACTTGCTCGGGAGAAGAAACTGACTCGTTTTATTTAGTGCCTATTTAG[CG]AGCCCAGAGTAACGTACATTTGTGCTGTTTTCAATTTTGTGCTATCGCAAATCACAAAAA | GCGATAGCACAAAATTGAAAACAGCACAAATGTACGTTACTCTGGGCTCG | PDLIM4;PDLIM4 | NM_003687;NM_001131027 | 3’UTR;3’UTR | DMR | 5:131607802-131609446 | Unclassified | PDLIM4;P4HA2 | ENST00000253754.3;ENST00000471826.1 | 3’UTR;3’UTR | PDLIM4;P4HA2;P4HA2;P4HA2 | ENST00000253754.3;ENST00000416053.1;ENST00000439698.1;ENST00000471826.1 | 3’UTR;5’UTR;5’UTR;3’UTR | chr5:131608285-131608975 | 3 | TRUE | 4.27e-05 | 0.1816602 | 4.27e-05 | 0.1816602 | 0.0389084 | 0.0228711 | 0.0000473 | FALSE | 1.9371559 | ||||||||||||||
| cg20060685 | chr12 | 106533898 |
|
89727890 | 86664271 | AAAAACAATACCCCACACAATAAAAATCAAACAAAAAAAACCTCCCACCA | AAAAACGATACCCCGCACGATAAAAATCAAACAAAAAAAACCTCCCACCG | I | C | Grn | NA | NA | NA | NA | NA | NA | chr12:106532106-106533696 | S_Shore | GGCGATGGTGACAGGAACGGTACCCCGCACGGTAAGGGTCAGGCAGGAAGGGCCTCCCAC[CG]CGGCGTGGCTGCCGCCGTTCTAAGAAGAGACCATGAAAAATAAGGAAGAAGGCTAGAGAA | AGGAACGGTACCCCGCACGGTAAGGGTCAGGCAGGAAGGGCCTCCCACCG | NUAK1 | NM_014840 | TSS200 | 12:105056148-105058046 | NUAK1;NUAK1 | ENST00000359413.4;ENST00000261402.2 | TSS1500;TSS200 | NUAK1;NUAK1 | ENST00000359413.4;ENST00000261402.2 | TSS1500;TSS200 | chr12:106533465-106534575 | 3 | TRUE | 4.29e-05 | 0.1816602 | 4.29e-05 | 0.1816602 | 0.0456939 | 0.0315648 | 0.0000653 | FALSE | -4.2257018 | ||||||||||||
| cg21665744 | chr7 | 39171113 |
|
68656249 | AATCCTCRCTACCATCAAAAAAATATTCTTTTTAACTACCTAAACTAACC | II | NA | NA | NA | NA | NA | NA | OpenSea | ACGCTGCTGCTGGTCCTCGCTGCCATCAAGGGAGTGTTCTTTTTGACTGCCTGAACTGAC[CG]AGGCGGCCACCCTTTAAGAAGAGCCCTTGATTCGGTCGAGTCGGAGGAGAAAAGACCCTA | CGGTCAGTTCAGGCAGTCAAAAAGAACACTCCCTTGATGGCAGCGAGGAC | POU6F2;POU6F2 | NM_007252;NM_001166018 | Body;Body | 7:39137559-39137644 | POU6F2 | ENST00000517348.1 | 5’UTR | POU6F2;POU6F2 | ENST00000464276.1;ENST00000517348.1 | 5’UTR;5’UTR | TRUE | 4.29e-05 | 0.1816602 | 4.29e-05 | 0.1816602 | -0.0739632 | 0.0827128 | 0.0001712 | FALSE | 1.4025658 | |||||||||||||||||||
| cg16208151 | chr18 | 74790207 |
|
81655922 | CTATATAAATCACTTTCCAAATCATAAAACAACACAACCACATAACAAAC | II | NA | NA | NA | NA | NA | NA | OpenSea | ATGCGCTCATGCTGTGTGAGTCACTTTCCAGGTCATAAAGCAACACAGCCACATGGCAAA[CG]GCATCTTCCGAGGGGCTGAAAGCTGCTTTTTGTCTACCTTCCTACCTCCACTTTCAACCG | TGTGTGAGTCACTTTCCAGGTCATAAAGCAACACAGCCACATGGCAAACG | MBP;MBP | NM_001025100;NM_001025101 | Body;Body | chr18:74789913-74789913 | MBP | ENST00000487778.1 | 3’UTR | MBP;MBP;MBP;MBP;MBP | ENST00000495162.1;ENST00000493247.1;ENST00000487778.1;ENST00000490754.1;ENST00000497479.1 | 3’UTR;3’UTR;3’UTR;3’UTR;3’UTR | chr18:74790020-74790275 | 3 | 4.30e-05 | 0.1816602 | 4.30e-05 | 0.1816602 | 0.0392326 | 0.0232774 | 0.0000482 | FALSE | 2.2159597 | ||||||||||||||||||
| ch.1.4505949F | chr1 | 229598574 |
|
69763971 | GCTTCCTATTTAAAAAACAAAATTCCCAACCAACCTCAATAACTCATACT | II | NA | NA | NA | NA | NA | NA | OpenSea | GCCTCAAACTCCTGGCCTCAAGTGATCCTACCGCCTTGGCCTCTCAAAGTGCTGGGATTA[CA]GCATGAGCCACTGAGGCTGGCTGGGAACTTTGTTTTTTAAACAGGAAGCATAATATCCCT | CAGCATGAGCCACTGAGGCTGGCTGGGAACTTTGTTTTTTAAACAGGAAG | NUP133 | NM_018230 | Body | TRUE | 4.31e-05 | 0.1816602 | 4.31e-05 | 0.1816602 | 0.0460424 | 0.0320758 | 0.0000664 | FALSE | -3.6475470 | ||||||||||||||||||||||||||
| cg10074506 | chr10 | 106035131 |
|
92656867 | AACTAAACAAAACRCCCCAAATATTAAACATTCCCRAACTCCTATAAAAC | II | NA | NA | rs7923376 | 0.067246 | NA | NA | chr10:106034574-106034803 | S_Shore | TCCTCAAGGCCAAAGACATCAGGTGAGAAGCGGGAACCCAGAGCCCCCGAGCAAACCCAG[CG]CCTCACAGGAGCCCGGGAATGTTTAACATCTGGGGCGCCCTGCTCAGCTTTTACAAGGGG | CGCCTCACAGGAGCCCGGGAATGTTTAACATCTGGGGCGCCCTGCTCAGC | GSTO2 | NM_183239 | Body | 10:106024998-106025201 | GSTO2;GSTO2 | ENST00000473401.1;ENST00000477078.1 | 5’UTR;5’UTR | chr10:106034520-106035155 | 3 | TRUE | 4.32e-05 | 0.1816602 | 4.32e-05 | 0.1816602 | 0.0711039 | 0.0765250 | 0.0001584 | FALSE | 1.6567472 | |||||||||||||||||||
| cg06097659 | chr1 | 1141991 |
|
31736189 | 76656895 | TCATAAACAATCCCAACCACCTCCAAACAAAACAAATAAAAACAAAAACA | TCATAAACGATCCCAACCACCTCCGAACAAAACGAATAAAAACGAAAACG | I | A | Red | NA | NA | NA | NA | NA | NA | chr1:1141670-1142150 | Island | CATCGCCCCGTGCTGTGCCATGCTCGGGTTTCAAGAGCCCACAGCCAGTTGGACACGCCC[CG]TCCCCGTCCTCACCCGCCCTGCCCGGAGGTGGCTGGGACCGTTCATGACCTGAGAATCCC | TCATGAACGGTCCCAGCCACCTCCGGGCAGGGCGGGTGAGGACGGGGACG | TNFRSF18;TNFRSF18;TNFRSF18;TNFRSF18;TNFRSF18;TNFRSF18 | NM_148901;NM_148901;NM_004195;NM_004195;NM_148902;NM_148902 | 5’UTR;1stExon;5’UTR;1stExon;1stExon;5’UTR | 1:1131534-1132013 | 1:1141523-1143111 | Unclassified | TNFRSF18;TNFRSF18;TNFRSF18;TNFRSF18 | ENST00000486728.1;ENST00000379268.2;ENST00000379268.2;ENST00000328596.6 | TSS1500;1stExon;5’UTR;TSS200 | TNFRSF18;TNFRSF18;TNFRSF18;TNFRSF18 | ENST00000486728.1;ENST00000379268.2;ENST00000379268.2;ENST00000328596.6 | TSS1500;1stExon;5’UTR;TSS200 | chr1:1141220-1142695 | 3 | TRUE | 4.35e-05 | 0.1816602 | 4.35e-05 | 0.1816602 | 0.0716292 | 0.0777908 | 0.0001610 | FALSE | -4.1829500 | ||||||||||
| cg06158539 | chr8 | 8637903 |
|
4681422 | AAAAACACAAATCACAAATACTCCTATAATCTATACTTTTTACTAAACRC | II | NA | NA | NA | NA | NA | NA | OpenSea | ACCCCTTTGGAAAAAGCACAGGTCACAGATGCTCCTGTGATCTGTGCTTTTTACTAGGCG[CG]TCCTTGACTTTGGCTAAATAAACCTCAAATAGATTGAAACCTGCCTCACTCAACTTTTGG | CGCGCCTAGTAAAAAGCACAGATCACAGGAGCATCTGTGACCTGTGCTTT | RP11-211C9.1;RP11-211C9.1 | ENST00000522213.1;ENST00000519147.1 | 3’UTR;3’UTR | RP11-211C9.1;RP11-211C9.1 | ENST00000522213.1;ENST00000519147.1 | 3’UTR;3’UTR | chr8:8637124-8638356 | 6 | 4.36e-05 | 0.1816602 | 4.36e-05 | 0.1816602 | -0.0499829 | 0.0378895 | 0.0000784 | FALSE | 1.9571391 | ||||||||||||||||||||||
| cg06229075 | chr7 | 38257731 |
|
24607884 | AAAAACAACATATCTTAAAACTACATAAATATCTAAAATAAACTTTAATC | II | NA | NA | NA | NA | NA | NA | OpenSea | CTCCACATAATGTCCTTAATGGAAGCCCACATGCCCCACCCACCCATCTTAAAGGTGAAA[CG]ATCAAAGCTCATTTCAGACACCCATGCAGTTTCAAGACATGCTGTTTTTATGCCTCTGCT | CGATCAAAGCTCATTTCAGACACCCATGCAGTTTCAAGACATGCTGTTTT | STARD3NL | NM_032016 | Body | STARD3NL | ENST00000471550.1 | 5’UTR | chr7:38257433-38257767 | 4 | 4.37e-05 | 0.1816602 | 4.37e-05 | 0.1816602 | -0.0428820 | 0.0279011 | 0.0000577 | FALSE | 1.9435418 | ||||||||||||||||||||||
| cg05670004 | chr10 | 135259565 |
|
61783210 | TCTCCTCCAATTTTATACCTAAAACAACCCRAAAACTTTTCTAAACCTAC | II | rs2249805 | 0.278244 | NA | NA | NA | NA | chr10:135259492-135260192 | Island | CGCCATTCTCATCTCCTCCAGTTTTGTGCCTGGGGCAGCCCGGGAGCTTTTCTGGGCCTG[CG]TCGGTGGCCGCAGCCCAGCTCCGCCCTGCGGTGCCCACCAGGAGGCTTTGCCGGGGCGGC | CGCAGGCCCAGAAAAGCTCCCGGGCTGCCCCAGGCACAAAACTGGAGGAG | 10:135109074-135110338 | SPRN | ENST00000541506.1 | 5’UTR | SPRN | ENST00000541506.1 | 5’UTR | chr10:135257718-135260333 | 6 | TRUE | 4.39e-05 | 0.1816602 | 4.39e-05 | 0.1816602 | -0.0448761 | 0.0305819 | 0.0000633 | FALSE | 0.2098527 | |||||||||||||||||||
| cg07711085 | chr20 | 61877875 |
|
19795873 | 86804430 | CTAAATTCCAAATCTAAAAAACCCATAACCTAAACACACATAACAATACA | CTAAATTCCAAATCTAAAAAACCCGTAACCTAAACACACGTAACGATACG | I | A | Red | NA | NA | rs34406003 | 0.348361 | NA | NA | chr20:61877854-61878071 | Island | GATTTCCTGCAGGACCAGAGCAGAGCCCAGGAAGGAGCCCCGGGAGCTCACGAGGCCACC[CG]CACCGTCACGTGTGCTCAGGCCACGGGCTCCTTAGATTTGGAATTCAGCTCCCACCGCCA | CTGAATTCCAAATCTAAGGAGCCCGTGGCCTGAGCACACGTGACGGTGCG | NKAIN4 | NM_152864 | Body | NKAIN4 | ENST00000466885.1 | 3’UTR | NKAIN4;NKAIN4;NKAIN4;NKAIN4 | ENST00000466885.1;ENST00000470246.1;ENST00000461738.1;ENST00000486495.1 | 3’UTR;3’UTR;3’UTR;3’UTR | chr20:61877678-61880872 | 6 | TRUE | 4.40e-05 | 0.1816602 | 4.40e-05 | 0.1816602 | -0.2028385 | 0.6249618 | 0.0012934 | FALSE | 1.2409912 | |||||||||||||
| cg00993388 | chr19 | 47505824 |
|
53736980 | TACCTAACCCTATAAACCCAAAATTAACTAAAAAATAACATCTATATTTC | II | NA | NA | NA | NA | NA | NA | chr19:47507306-47507692 | N_Shore | TGGTGGAGCTGTGCCTGGCCCTGTAGGCCCAGGGTTGGCTGGAAGGTGACATCTGTGTTT[CG]TTTTAGCTGAGGTTGGCAGAAACGTTCCCAAACTCCCCCAGCCCTGGACCCCAGCAGATG | CGAAACACAGATGTCACCTTCCAGCCAACCCTGGGCCTACAGGGCCAGGC | GRLF1 | NM_004491 | 3’UTR | TRUE | 19:47505755-47506374 | Unclassified_Cell_type_specific | ARHGAP35 | ENST00000404338.2 | 3’UTR | ARHGAP35 | ENST00000404338.2 | 3’UTR | chr19:47503575-47509574 | 6 | chr19:47504904-47507801 | 6 | TRUE | 4.40e-05 | 0.1816602 | 4.40e-05 | 0.1816602 | 0.0512430 | 0.0398935 | 0.0000826 | FALSE | 3.0362779 | ||||||||||||
| cg08023684 | chr10 | 121446563 |
|
91744418 | ATCRAATCCACAATCTAATTAAAATTCTATCCTCATAACRAAAACTAACC | II | NA | NA | NA | NA | NA | NA | OpenSea | AGTCAGAAGTAATCGGATCCACAATCTGATTAGAATTCTATCCTCATAACGGGAGCTGAC[CG]CATCCGCATCCATTTGTGGTCCGGCCCAGTCACCACTTGGTTGGTGTTCTAGCACTATAA | CGGTCAGCTCCCGTTATGAGGATAGAATTCTAATCAGATTGTGGATCCGA | TRUE | 10:121445962-121446592 | Unclassified | RP11-179H18.8 | ENST00000436838.1 | 3’UTR | RP11-179H18.8 | ENST00000436838.1 | 3’UTR | chr10:121446060-121446675 | 3 | 4.41e-05 | 0.1816602 | 4.41e-05 | 0.1816602 | 0.0507321 | 0.0391107 | 0.0000809 | FALSE | 2.7135599 | |||||||||||||||||||
| cg09268780 | chr9 | 71319670 |
|
60674877 | AATCTTACTTACTAAAAACACCTACTATCCTTAAAATAAAAACAACCAAC | II | NA | NA | NA | NA | NA | NA | chr9:71319698-71320937 | N_Shore | CCTGTTGGGTAGGTCTTACTTGCTGGGAACACCTGCTGTCCTTAGAATGGGAGCAACCAA[CG]CCTTGGAATCCTGGCCTGTCCCTTCCTCGTGAAGGGGGCGCCTGCGCTCAAGTGCCGGCT | GTCTTACTTGCTGGGAACACCTGCTGTCCTTAGAATGGGAGCAACCAACG | PIP5K1B;PIP5K1B | NM_001278253;NM_003558 | TSS1500;TSS1500 | 9:70509490-70511182 | PIP5K1B;PIP5K1B;PIP5K1B | ENST00000541509.1;ENST00000419747.2;ENST00000474356.1 | TSS1500;TSS1500;TSS1500 | PIP5K1B;PIP5K1B;PIP5K1B;PIP5K1B | ENST00000541509.1;ENST00000419747.2;ENST00000472907.1;ENST00000474356.1 | TSS1500;TSS1500;TSS1500;TSS1500 | chr9:71319425-71319875 | 3 | 4.42e-05 | 0.1816602 | 4.42e-05 | 0.1816602 | 0.0517944 | 0.0407881 | 0.0000844 | FALSE | -4.2797954 | |||||||||||||||||
| cg05388281 | chr4 | 125504 |
|
85651288 | AAAAAAAATCACCTAATATCCRCAAAAACRCRACCAAATTCTACACAAAC | II | rs10006358 | 0.412381 | NA | NA | NA | NA | chr4:124332-124841 | S_Shore | GAGTCTGGGTTGGAGGAAGTCACCTGGTGTCCGCAGAGGCGCGGCCAGGTTCTGCACAGG[CG]CTGTCCCGCTGGGCACTGTCCTCTTCCTCCAGGCCTCCTCCCGGGGAGAAAGGGGACTGG | CGCCTGTGCAGAACCTGGCCGCGCCTCTGCGGACACCAGGTGACTTCCTC | ZNF718 | NM_001039127 | Body | 4:125288-125620 | Unclassified | ZNF718;ZNF718;ZNF718 | ENST00000513304.1;ENST00000511079.1;ENST00000510175.1 | 5’UTR;5’UTR;5’UTR | ZNF718;ZNF718;ZNF718 | ENST00000513304.1;ENST00000511079.1;ENST00000510175.1 | 5’UTR;5’UTR;5’UTR | chr4:125385-125675 | 3 | TRUE | 4.42e-05 | 0.1816602 | 4.42e-05 | 0.1816602 | 0.1386023 | 0.2921447 | 0.0006046 | FALSE | -2.8147121 | |||||||||||||||
| cg26042546 | chr3 | 114430458 |
|
4725449 | CAACATTTAATACCAATCTAACTTACCAAAACCAATTAAACTAAAAAAAC | II | NA | NA | NA | NA | NA | NA | OpenSea | GAGGAGTAAGTCAAATTAGATAGTTAACTAAAAATAGTATCTCTGAGTTTATAAAGGAGA[CG]TTTTCCCAGCCCAACTGGTCCTGGTAAGTTAGACTGGCATCAAATGCTGACATGGCAATC | AGCATTTGATGCCAGTCTAACTTACCAGGACCAGTTGGGCTGGGAAAACG | ZBTB20;ZBTB20;ZBTB20;ZBTB20;ZBTB20 | NR_121662;NM_001164345;NM_001164344;NM_001164343;NM_015642 | Body;5’UTR;5’UTR;5’UTR;5’UTR | ZBTB20;ZBTB20;ZBTB20;ZBTB20;ZBTB20 | ENST00000488663.1;ENST00000464560.1;ENST00000471418.1;ENST00000462705.1;ENST00000357258.3 | 3’UTR;5’UTR;5’UTR;5’UTR;5’UTR | ZBTB20;ZBTB20;ZBTB20;ZBTB20;ZBTB20;ZBTB20;ZBTB20;ZBTB20;ZBTB20;ZBTB20;ZBTB20 | ENST00000463497.1;ENST00000488663.1;ENST00000479879.1;ENST00000464560.1;ENST00000471418.1;ENST00000462705.1;ENST00000357258.3;ENST00000463890.1;ENST00000480832.1;ENST00000491500.1;ENST00000492665.1 | 3’UTR;3’UTR;3’UTR;5’UTR;5’UTR;5’UTR;5’UTR;3’UTR;3’UTR;3’UTR;3’UTR | chr3:114430240-114430470 | 3 | 4.45e-05 | 0.1816602 | 4.45e-05 | 0.1816602 | -0.0497063 | 0.0376218 | 0.0000779 | FALSE | 2.7243222 | |||||||||||||||||||
| cg16151374 | chr16 | 53056651 |
|
90677495 | TAAAACAAAAACTTCTTATAAATTTATCCAACCTAAACRCRATAACCCAC | II | NA | NA | NA | NA | NA | NA | OpenSea | AATCCAAAATCTGGAACAAAAACTTCTTATAAGTTTATCCAGCCTGGGCGCGGTGGCCCA[CG]CCTGAAATCCCAGCACTTTGGGAAGCTGAGGCGGGTGGATCACCTGAGGTCAGGAGTTCG | GGAACAAAAACTTCTTATAAGTTTATCCAGCCTGGGCGCGGTGGCCCACG | chr16:53055990-53056701 | 6 | chr16:53055931-53057272 | 6 | 4.46e-05 | 0.1816602 | 4.46e-05 | 0.1816602 | 0.0412645 | 0.0259319 | 0.0000537 | FALSE | -2.4657375 | ||||||||||||||||||||||||||
| cg03329597 | chr3 | 108125523 |
|
92698560 | ACCACATCCATAAATACTTCATCAACTTAAACATATATTTATAACATTAC | II | NA | NA | NA | NA | NA | NA | OpenSea | TATGGCTTTAAAAAAATCTGATAAAGTTTCTCATAAAGGCTCACCCAGGAAAATAAATAA[CG]CAATGTTACAAATACATGTCCAAGTTGATGAAGTATTTATGGATGTGGCTGAGGACAGAA | CGCAATGTTACAAATACATGTCCAAGTTGATGAAGTATTTATGGATGTGG | MYH15 | NM_014981 | Body | 3:108125349-108126000 | Unclassified_Cell_type_specific | MYH15 | ENST00000478998.1 | 3’UTR | chr3:108125500-108125775 | 3 | TRUE | 4.51e-05 | 0.1816602 | 4.51e-05 | 0.1816602 | -0.2177447 | 0.7237999 | 0.0014979 | FALSE | -1.1337305 | |||||||||||||||||||
| cg10764907 | chr7 | 158886532 |
|
89606497 | TCAACACTAAACATAAAATAACCRCTATCCAAAAAACTCAAAAACACTAC | II | NA | NA | NA | NA | NA | NA | chr7:158886367-158886595 | Island | CTGGGTCCGGACAGGGGAGAGGCCCTGCAGCGTCCCTGGGTCCGGACATGGGAGAGGCCC[CG]CAGTGTCCCTGAGTCTCCTGGACAGCGGCCACCCCATGCCCAGTGCTGACGGGCGCCCCT | CAGCACTGGGCATGGGGTGGCCGCTGTCCAGGAGACTCAGGGACACTGCG | VIPR2 | NM_003382 | Body | chr7:158886385-158886755 | 3 | TRUE | 4.53e-05 | 0.1816602 | 4.53e-05 | 0.1816602 | 0.0549864 | 0.0461898 | 0.0000956 | FALSE | 2.8988197 | |||||||||||||||||||||||
| cg19271384 | chr9 | 111716387 |
|
76810849 | TACATTATTAAAATAATTTATTTACCTTTTCAAACAATTCCATTTCAATC | II | NA | NA | NA | NA | NA | NA | OpenSea | GCATTTTCATGATTTTTATTTTTACTTTTACTAATGATGATGATTATTAAAGTTTAATGA[CG]ACTGAAATGGAATTGCCTGAAAAGGTAAATAAACCATCTTAATAATGTAACCAAGCTTGC | CGACTGAAATGGAATTGCCTGAAAAGGTAAATAAACCATCTTAATAATGT | CTNNAL1;CTNNAL1 | NM_003798;NM_001286974 | Body;Body | 9:111716156-111716619 | Unclassified_Cell_type_specific | CTNNAL1 | ENST00000374594.1 | 5’UTR | CTNNAL1 | ENST00000374594.1 | 5’UTR | chr9:111716340-111716615 | 3 | 4.58e-05 | 0.1816602 | 4.58e-05 | 0.1816602 | 0.0460068 | 0.0323995 | 0.0000671 | FALSE | -1.4000865 | |||||||||||||||||
| cg02383666 | chr16 | 88534398 |
|
91803895 | 75628150 | CAATAAACTCACAAATATATAAAAAACAATAAAAAACTCACAAATATACA | CGATAAACTCGCGAATATATAAAAAACGATAAAAAACTCGCGAATATACG | I | A | Red | rs115282460 | 0.085143 | NA | NA | NA | NA | chr16:88536936-88537375 | N_Shelf | CTTCCCCTTATCTCACCCCACCCTAATGCCAGGAACAAAAGTGAGAACACACTCTCAACC[CG]CACACCCGCGAGCCCCCCACCGCCCCTCACACACCCGCGAGCCCACCGCCCCTCACGCCC | CGGTGGGCTCGCGGGTGTGTGAGGGGCGGTGGGGGGCTCGCGGGTGTGCG | ZFPM1 | NM_153813 | Body | 16:87061768-87062172 | ZFPM1 | ENST00000569086.1 | 5’UTR | ZFPM1;ZFPM1;ZFPM1;ZFPM1 | ENST00000562417.1;ENST00000569086.1;ENST00000563351.1;ENST00000562437.1 | 5’UTR;5’UTR;5’UTR;5’UTR | chr16:88533920-88534435 | 3 | TRUE | 4.60e-05 | 0.1816602 | 4.60e-05 | 0.1816602 | -0.0794843 | 0.0967966 | 0.0002003 | FALSE | 1.1847738 | ||||||||||||
| cg02181494 | chr22 | 51066755 |
|
82770428 | CTAAAACTATTAACTACRATCTTAAAACRAACTCTAAAAACTTCCTCTAC | II | NA | NA | NA | NA | NA | NA | chr22:51066107-51067051 | Island | GCCGTGTGCGCCTGAGGCTGTTGGCTGCGGTCTTGAAACGGGCTCTGGGAGCTTCCTCTG[CG]CGGTCGGCCCTGGCTGAGGCGTCCCGGGCTGCGCGCGGGGCTCGGCGCTGCGCAGTGTCC | TGAGGCTGTTGGCTGCGGTCTTGAAACGGGCTCTGGGAGCTTCCTCTGCG | ARSA;ARSA;ARSA;ARSA;ARSA | NM_001085425;NM_001085428;NM_000487;NM_001085426;NM_001085427 | TSS200;TSS200;TSS200;TSS200;TSS200 | 22:49412165-49413905 | 22:51066035-51067147 | Promoter_Associated | ARSA;ARSA;ARSA;ARSA;ARSA;ARSA | ENST00000395621.3;ENST00000395619.3;ENST00000356098.5;ENST00000216124.5;ENST00000453344.2;ENST00000547805.1 | TSS200;TSS200;TSS200;TSS200;TSS200;TSS200 | ARSA;ARSA;ARSA;ARSA;ARSA;ARSA | ENST00000395621.3;ENST00000395619.3;ENST00000356098.5;ENST00000216124.5;ENST00000453344.2;ENST00000547805.1 | TSS200;TSS200;TSS200;TSS200;TSS200;TSS200 | chr22:51065800-51067015 | 3 | TRUE | TRUE | 4.62e-05 | 0.1816602 | 4.62e-05 | 0.1816602 | 0.0430947 | 0.0284769 | 0.0000589 | FALSE | -4.3911269 | |||||||||||||
| cg03471977 | chr11 | 622044 |
|
48633937 | 69673940 | ATAACCATTAAAAAATACACCTCACTCACAACAAAAACAAATAACCATCA | ATAACCGTTAAAAAATACACCTCACTCACAACAAAAACGAATAACCGTCG | I | A | Red | NA | NA | rs61879160 | 0.077169 | NA | NA | chr11:621963-622176 | Island | CGTGAGTGAGGTGCACCCCTCAACGGCCACCTGTCCCCGCCCTAAGTGAGGTGCACCCCT[CG]ACGGCCACCCGTCCCTGCTGTGAGTGAGGTGCACCCCTCAACGGCCACCCGTCCCCGCCG | CGACGGCCACCCGTCCCTGCTGTGAGTGAGGTGCACCCCTCAACGGCCAC | MUPCDH;MUPCDH | NM_021924;NM_031264 | Body;Body | 11:611106-612145 | CDHR5;CDHR5;CDHR5;CDHR5 | ENST00000531177.1;ENST00000531899.1;ENST00000532949.1;ENST00000531088.1 | 3’UTR;3’UTR;TSS1500;5’UTR | chr11:604791-622357 | 6 | TRUE | 4.64e-05 | 0.1816602 | 4.64e-05 | 0.1816602 | 0.0689101 | 0.0728790 | 0.0001508 | FALSE | 4.4391436 | |||||||||||||||
| cg15894936 | chr1 | 206808166 |
|
42643264 | CATAAACATAAAACRACAAAACCTAAACTAAAAACTTCTAACRCCTAACC | II | NA | NA | NA | NA | NA | NA | chr1:206808523-206809187 | N_Shore | CATTCTAAGGAAAAAGTCAGGAAGGGCCTTGCAGAGGTAGGTCCTGGTGCGGCAAGAGGA[CG]GTTAGGCGTTAGAAGCTTCTAGTTCAGGCTTTGCCGCTTCATGCTCATGAGGAAGCGCGG | CGGTTAGGCGTTAGAAGCTTCTAGTTCAGGCTTTGCCGCTTCATGCTCAT | DYRK3;DYRK3 | NM_003582;NM_001004023 | TSS1500;TSS1500 | TRUE | 1:204874778-204874885 | 1:206807416-206809601 | Promoter_Associated | DYRK3;DYRK3;DYRK3;DYRK3;RP11-343H5.6 | ENST00000367109.2;ENST00000367108.3;ENST00000489878.1;ENST00000367106.1;ENST00000425161.1 | TSS1500;TSS1500;TSS1500;TSS1500;3’UTR | DYRK3;DYRK3;DYRK3;DYRK3;DYRK3;RP11-343H5.6 | ENST00000367109.2;ENST00000367108.3;ENST00000489878.1;ENST00000441486.1;ENST00000367106.1;ENST00000425161.1 | TSS1500;TSS1500;TSS1500;TSS1500;TSS1500;3’UTR | chr1:206807940-206808415 | 3 | 4.66e-05 | 0.1816602 | 4.66e-05 | 0.1816602 | 0.0539185 | 0.0446517 | 0.0000924 | FALSE | -4.3288483 | ||||||||||||||
| cg13732582 | chr4 | 39448975 |
|
42617170 | 52619584 | CACCTAACTATAATTCCCTAAAAAATACACAAACTACTACAATAAATCCA | CGCCTAACTATAATTCCCTAAAAAATACGCAAACTACTACGATAAATCCG | I | A | Red | NA | NA | NA | NA | NA | NA | chr4:39448184-39449054 | Island | AGCTCCCCCACGCGCCTGGCTGTGATTCCCTGGGGGGTGCGCAAGCTGCTGCGGTGGGTC[CG]GAGGAACTACGGCGACATGGACATTTACATCACCGCCAGTGGCATCGACGACCAGGCTCT | CGGACCCACCGCAGCAGCTTGCGCACCCCCCAGGGAATCACAGCCAGGCG | KLB | NM_175737 | Body | TRUE | 4:39124533-39125421 | 4:39448518-39448983 | Unclassified_Cell_type_specific | chr4:39448185-39449195 | 3 | TRUE | 4.66e-05 | 0.1816602 | 4.66e-05 | 0.1816602 | 0.0810551 | 0.1009122 | 0.0002088 | FALSE | -3.5642113 | |||||||||||||||
| cg26857315 | chr19 | 932759 |
|
30803526 | 1744320 | ACAACTAAACTTACAAAAAACAATTTAAACAAATAAATAAACACATCCCA | ACGACTAAACTTACGAAAAACAATTTAAACAAATAAATAAACGCGTCCCG | I | C | Grn | NA | NA | NA | NA | NA | NA | chr19:932598-932845 | Island | CGCCTGACCACGGCGACTGGACTTACGAGGAGCAGTTTAAGCAGGTGAGTGGGCGCGTCC[CG]CGTGGCGGCTGAGGCACCTGCTCCTGGGCCAGTGGGGCCCTTTGAAGGCCCACGTTGCAC | CGGGACGCGCCCACTCACCTGCTTAAACTGCTCCTCGTAAGTCCAGTCGC | ARID3A | NM_005224 | Body | 19:883558-884941 | 19:932459-933164 | Unclassified | ARID3A | ENST00000263620.2 | ExonBnd | ARID3A | ENST00000263620.2 | ExonBnd | chr19:932420-933775 | 3 | TRUE | 4.68e-05 | 0.1816602 | 4.68e-05 | 0.1816602 | -0.0762722 | 0.0894208 | 0.0001851 | FALSE | -5.0945291 | ||||||||||
| cg02359483 | chr5 | 68339047 |
|
38755200 | AACRCATAAACCTTTATATAATTTAATTTATCATCCTTCTCTATCCTTCC | II | NA | NA | NA | NA | NA | NA | OpenSea | ATAGTTCTTGTGGCGCATGAGCCTTTGTGTGATTTAGTTTGTCATCCTTCTCTGTCCTTC[CG]TCTTATTCCTATCCAAGTTGTGGCACTTCAATGTATTTGTCGTTCTCGGACAGCAAAGTA | CGGAAGGACAGAGAAGGATGACAAACTAAATCACACAAAGGCTCATGCGC | TRUE | 5:68338631-68339402 | Promoter_Associated | CTC-498J12.1 | ENST00000479830.2 | 3’UTR | CTC-498J12.1 | ENST00000479830.2 | 3’UTR | chr5:68338540-68339335 | 3 | 4.71e-05 | 0.1816602 | 4.71e-05 | 0.1816602 | 0.0561290 | 0.0484847 | 0.0001003 | FALSE | -4.7494062 | |||||||||||||||||||
| cg12352225 | chr7 | 25015862 |
|
91702394 | CCTAAAAATTAAATACAATAATACATATACAAAAACTTCTAACAACACCC | II | NA | NA | rs6461832 | 0.164747 | rs6461832 | 0.164747 | chr7:25018999-25020255 | N_Shelf | TTTGATATTGCCCTGAGGATTAAATGCAATAATGCATGTACAGGAACTTCTGACAGCACC[CG]GCACATACAAGTTCAGCACCTATTACTACTGTTATTAATGTTATTATTCACTATGTAAGC | CGGGTGCTGTCAGAAGTTCCTGTACATGCATTATTGCATTTAATCCTCAG | OSBPL3;OSBPL3;OSBPL3;OSBPL3 | NM_015550;NM_145322;NM_145320;NM_145321 | 5’UTR;5’UTR;5’UTR;5’UTR | OSBPL3;OSBPL3 | ENST00000352860.1;ENST00000313367.2 | 5’UTR;5’UTR | OSBPL3;OSBPL3;OSBPL3 | ENST00000352860.1;ENST00000313367.2;ENST00000415952.1 | 5’UTR;5’UTR;5’UTR | TRUE | 4.71e-05 | 0.1816602 | 4.71e-05 | 0.1816602 | 0.2378467 | 0.8706711 | 0.0018019 | FALSE | 2.7998412 | |||||||||||||||||||
| cg05971102 | chr2 | 3753297 |
|
98765408 | AATATTACTCTTTCCCCTTACTATAAAACTAAATATTTTCTAACCAAACC | II | NA | NA | rs10176343 | 0.482307 | rs10176343 | 0.482307 | chr2:3750828-3751927 | S_Shore | TGTGCCTGGGAGATGTTACTCTTTCCCCTTGCTGTGGGGCTGGATATTTTCTAACCAGAC[CG]TGTTGTACCTCCAGTTTTGTAGAGAGAGTCTCGAGTCTCATGGTTTATTTAAAATGTTTT | CGGTCTGGTTAGAAAATATCCAGCCCCACAGCAAGGGGAAAGAGTAACAT | RDMR | TRUE | TRUE | 4.76e-05 | 0.1816602 | 4.76e-05 | 0.1816602 | 0.1459737 | 0.3285515 | 0.0006799 | FALSE | -0.5560691 | ||||||||||||||||||||||||||
| cg11528570 | chr10 | 6199480 |
|
3621132 | ACRTTCAACTTCTAAAATATTTTCACCAAAAACACAACTATTAACTAAAC | II | rs74229656 | 0.036200 | NA | NA | NA | NA | OpenSea | ACCTCGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACGG[CG]CCCAGCCAATAGTTGTGTCTTTGGTGAAAACATTCTAGAAGTTGAACGTCATCTGTTTAT | CGTTCAACTTCTAGAATGTTTTCACCAAAGACACAACTATTGGCTGGGCG | PFKFB3;PFKFB3 | NM_001145443;NM_001282630 | Body;Body | PFKFB3;PFKFB3 | ENST00000379784.4;ENST00000379781.3 | 5’UTR;5’UTR | PFKFB3;PFKFB3 | ENST00000379784.4;ENST00000379781.3 | 5’UTR;5’UTR | chr10:6199465-6199975 | 3 | 4.84e-05 | 0.1816602 | 4.84e-05 | 0.1816602 | 0.1264864 | 0.2474707 | 0.0005121 | FALSE | 2.8434617 | |||||||||||||||||||
| cg02275226 | chr11 | 134608598 |
|
58727952 | CTCACAACRATAACRTATATATCTATATAAATCTATATATCTCTCTATAC | II | NA | NA | NA | NA | NA | NA | chr11:134605082-134605863 | S_Shelf | CATTCCTTGAGCTCACAGCGATGGCGTGTGTGTCTGTGTGAGTCTGTGTGTCTCTCTGTG[CG]TGTCTGTGTGAGTCCGTGTGTCTCTCCATGAGTGTCTGTGCGAGTCTGTGTGTCTCTCCG | CGCACAGAGAGACACACAGACTCACACAGACACACACGCCATCGCTGTGA | 11:134113808-134114029 | RP11-469N6.1 | ENST00000513405.1 | 5’UTR | RP11-469N6.1 | ENST00000513405.1 | 5’UTR | TRUE | 4.85e-05 | 0.1816602 | 4.85e-05 | 0.1816602 | 0.1073549 | 0.1783448 | 0.0003691 | FALSE | 2.7692406 | |||||||||||||||||||||
| cg07109603 | chr12 | 24049014 |
|
22639921 | CTAACACAAAAAAACATTTCTATTACAATAACCCCTAACCACACAATAAC | II | NA | NA | NA | NA | NA | NA | OpenSea | ACATCCTGGAAGGAACAAAAGAGGAGAAAATAATGAAACCTCCACATAAATCCTTAATGC[CG]TCATTGTGTGGTTAGGGGCCATTGTAACAGAAATGCCTTTTTGTGCTAGCAGAGAGCAGG | TAGCACAAAAAGGCATTTCTGTTACAATGGCCCCTAACCACACAATGACG | SOX5;SOX5;SOX5;SOX5 | NM_006940;NM_001261415;NM_152989;NM_001261414 | Body;Body;5’UTR;5’UTR | SOX5;SOX5;SOX5;SOX5 | ENST00000546136.1;ENST00000541536.1;ENST00000309359.1;ENST00000435266.2 | TSS200;TSS200;5’UTR;5’UTR | SOX5;SOX5;SOX5;SOX5;SOX5 | ENST00000546136.1;ENST00000541536.1;ENST00000538083.1;ENST00000309359.1;ENST00000435266.2 | TSS200;TSS200;5’UTR;5’UTR;5’UTR | chr12:24048725-24049130 | 3 | 4.86e-05 | 0.1816602 | 4.86e-05 | 0.1816602 | 0.0782403 | 0.0947701 | 0.0001961 | FALSE | 1.3643949 | |||||||||||||||||||
| cg20260921 | chr5 | 178054647 |
|
66746869 | CCTAACAAAATTTTCCTATTAAAATCCCTACCTCCTAAACAATTAAAATC | II | NA | NA | NA | NA | NA | NA | chr5:178053432-178054411 | S_Shore | CAATGGAGACTCCTGACAAGGTTTTCCTGTTAGGATCCCTACCTCCTGAGCAGTTAAGGT[CG]CTGGAAGTTTCCCTAACGAAGTTTTCCCCATTTTTTTTTGTCCCTGCGGGCTGATTTTAT | CTGACAAGGTTTTCCTGTTAGGATCCCTACCTCCTGAGCAGTTAAGGTCG | CLK4 | NM_020666 | TSS1500 | 5:177985932-177987272 | CLK4;CLK4;CLK4 | ENST00000536763.1;ENST00000520957.1;ENST00000316308.4 | TSS1500;TSS1500;TSS1500 | CLK4;CLK4;CLK4;CLK4;CLK4;CLK4;CLK4;CLK4;CLK4;CLK4;CLK4 | ENST00000536763.1;ENST00000521621.1;ENST00000520957.1;ENST00000519583.1;ENST00000520126.1;ENST00000520199.1;ENST00000522136.1;ENST00000520878.1;ENST00000522556.1;ENST00000316308.4;ENST00000520909.1 | TSS1500;TSS1500;TSS1500;TSS1500;TSS1500;TSS1500;TSS1500;TSS1500;TSS1500;TSS1500;3’UTR | chr5:178052751-178054664 | 6 | chr5:178051008-178055222 | 6 | 4.88e-05 | 0.1816602 | 4.88e-05 | 0.1816602 | 0.0512052 | 0.0406238 | 0.0000841 | FALSE | 0.8258437 | |||||||||||||||
| cg12928933 | chr3 | 57680278 |
|
99723462 | RTCACTACTAATATCTATACATACTTAACCACCTCCTTAAAAACAAAAAC | II | NA | NA | rs17744435 | 0.131148 | rs17744435 | 0.131148 | chr3:57678339-57678938 | S_Shore | CCATTTGACAAATACTGCCCTCTTAACATTCTTAGAATTTTTTTTTGGAGCAAGTGTTAG[CG]TCCCTGTTTTCAAGGAGGTGGTCAAGTATGCACAGACATCAGTAGTGACGTTTGCTGGAG | TCACTACTGATGTCTGTGCATACTTGACCACCTCCTTGAAAACAGGGACG | FAM116A | NM_152678 | TSS1500 | RP11-755B10.3;FAM116A | ENST00000465933.1;ENST00000311128.5 | 5’UTR;TSS1500 | RP11-755B10.3;FAM116A | ENST00000465933.1;ENST00000311128.5 | 5’UTR;TSS1500 | chr3:57679980-57680350 | 3 | TRUE | 4.90e-05 | 0.1816602 | 4.90e-05 | 0.1816602 | 0.1250139 | 0.2422764 | 0.0005014 | FALSE | 2.6453045 | |||||||||||||||||
| cg09925682 | chr19 | 3373819 |
|
40739829 | AAATTCATTCTATTACTCAACAAACATTTAATAAATACCTACTACATACC | II | NA | NA | rs12974128 | 0.298541 | NA | NA | chr19:3369477-3369913 | S_Shelf | TGGATCCAGGTGAGGGCCGAGCCCAGGTCCCTGCCAAGTCCTCGGCACCCTACCTGGGAC[CG]GCATGCAGCAGGCACTCACTAAATGTTTGCTGAGCAACAGAATGAATCTTCCCTCTCTGG | CGGCATGCAGCAGGCACTCACTAAATGTTTGCTGAGCAACAGAATGAATC | NFIC;NFIC | NM_005597;NM_205843 | Body;Body | chr19:3373188-3373871 | 5 | TRUE | 4.90e-05 | 0.1816602 | 4.90e-05 | 0.1816602 | 0.1576219 | 0.3851701 | 0.0007971 | FALSE | 0.2749218 | |||||||||||||||||||||||
| cg06124667 | chr3 | 178110731 |
|
79623364 | AATCATACACAAAACAATTATTACTAATATATTTAAACATCCTTAAATAC | II | NA | NA | NA | NA | NA | NA | OpenSea | CAAAAAAAACTAGTCATGCACAAGACAATTATTACTAATGTGTTTAAACATCCTTAAATA[CG]TTCTGTTTCACTTCTTTCACTTTATTTGGATAATCAACTCCACTTTAATTTTCCAATACT | GTCATGCACAAGACAATTATTACTAATGTGTTTAAACATCCTTAAATACG | KCNMB2 | ENST00000437510.1 | 5’UTR | chr3:178109840-178110897 | 6 | 4.91e-05 | 0.1816602 | 4.91e-05 | 0.1816602 | -0.0482673 | 0.0361407 | 0.0000748 | FALSE | 2.4445916 | |||||||||||||||||||||||||
| cg07283582 | chr17 | 63770753 |
|
8711878 | TAACCAAAATAATATCCAACCAAAAATTAATAAAAATAATCRATATCTCC | II | NA | NA | NA | NA | NA | NA | OpenSea | CAGCACGGATGTAGCCAAAATAATGTCCAACCAAAGATTAGTGGGGATAATCGATGTCTC[CG]TGGGTGCTGGGTGCGTAGGTGACATCCAGGATCGGAGGCCCTACCCCATGGCATGATAGA | CGGAGACATCGATTATCCCCACTAATCTTTGGTTGGACATTATTTTGGCT | CCDC46;CCDC46 | NM_001037325;NM_145036 | Body;Body | TRUE | TRUE | 4.92e-05 | 0.1816602 | 4.92e-05 | 0.1816602 | 0.0606792 | 0.0571333 | 0.0001182 | FALSE | 1.1920069 | |||||||||||||||||||||||||
| cg19822227 | chr6 | 83902535 |
|
70655956 | TCAATACCTCTACRAATACCTTTATTAAAAACATATTTACCAAATCCAAC | II | NA | NA | NA | NA | NA | NA | chr6:83902606-83903777 | N_Shore | TACAACTACTTTCAATGCCTCTGCGAATGCCTTTATTGAAAGCATATTTGCCAAATCCAG[CG]TCCACGCAAAAAGTTAAGAGTATCCCCCTACTCTCCATTCAATCTTCAAATCTCCTTGGT | CGCTGGATTTGGCAAATATGCTTTCAATAAAGGCATTCGCAGAGGCATTG | PGM3;PGM3;PGM3;PGM3;RWDD2A | NM_001199918;NM_001199919;NM_015599;NM_001199917;NM_033411 | 5’UTR;5’UTR;5’UTR;5’UTR;TSS1500 | PGM3;PGM3;PGM3;PGM3;RWDD2A;RWDD2A | ENST00000283977.4;ENST00000512866.1;ENST00000513973.1;ENST00000506587.1;ENST00000369724.3;ENST00000539997.1 | 5’UTR;5’UTR;5’UTR;5’UTR;TSS1500;TSS1500 | PGM3;PGM3;PGM3;PGM3;PGM3;PGM3;PGM3;PGM3;PGM3;PGM3;RWDD2A;RWDD2A | ENST00000510258.1;ENST00000283977.4;ENST00000515333.1;ENST00000512866.1;ENST00000505470.1;ENST00000513973.1;ENST00000507554.1;ENST00000503094.1;ENST00000508748.1;ENST00000506587.1;ENST00000369724.3;ENST00000539997.1 | 5’UTR;5’UTR;3’UTR;5’UTR;5’UTR;5’UTR;5’UTR;5’UTR;5’UTR;5’UTR;TSS1500;TSS1500 | chr6:83902200-83902855 | 3 | 4.94e-05 | 0.1816602 | 4.94e-05 | 0.1816602 | 0.0448479 | 0.0312347 | 0.0000646 | FALSE | -4.8725551 | ||||||||||||||||||
| cg07891854 | chr3 | 108156514 |
|
85666510 | ACTTTAAATTACCCTCCAATTTATACAATTCCCTTTCACAATTCATTCTC | II | NA | NA | NA | NA | NA | NA | OpenSea | TTCCCGATTCAGCTTTAAATTGCCCTCCAGTTTGTGCAGTTCCCTTTCACAGTTCATTCT[CG]CTTTTCTCTCCTGCTCAAGGGCACCCTCAAGCTGACAAAAGGAAACATTATTTAGCTAAA | CTTTAAATTGCCCTCCAGTTTGTGCAGTTCCCTTTCACAGTTCATTCTCG | MYH15 | NM_014981 | Body | MYH15 | ENST00000478998.1 | 3’UTR | chr3:108156265-108156535 | 3 | 4.97e-05 | 0.1816602 | 4.97e-05 | 0.1816602 | 0.0913111 | 0.1296192 | 0.0002683 | FALSE | 1.6915513 | ||||||||||||||||||||||
| cg08035234 | chr1 | 62107430 |
|
46784189 | ATTAAACCAAAACTTAAAAAAAACCTAACAACCRTCTCTAAATCTAACAC | II | NA | NA | NA | NA | NA | NA | OpenSea | TGCTTTCTTTTGTTAAGCCAAGACTTGAGAGAAACCTGGCAGCCGTCTCTAAGTCTGGCA[CG]ATTTCACCTCAGACGCACTCGGTTGGTTTGGATGTTGAGGGAGACCGCACATGAGAGAGG | CGTGCCAGACTTAGAGACGGCTGCCAGGTTTCTCTCAAGTCTTGGCTTAA | TRUE | 1:61880018-61880131 | 1:62107064-62108518 | Unclassified | chr1:62107320-62107695 | 3 | TRUE | 4.99e-05 | 0.1816602 | 4.99e-05 | 0.1816602 | 0.0929403 | 0.1343756 | 0.0002781 | FALSE | -3.8156236 | |||||||||||||||||||||||
| cg11705504 | chr13 | 98564638 |
|
47770914 | AAACRTCAAACATAACTACAAACTCACAAAAATCAAATCATTTAAACTAC | II | NA | NA | rs7998071 | 0.455140 | rs7998071 | 0.455140 | OpenSea | GGAGAACAGCTGAGCGTCAAACATGGCTACAGGCTCACAAAAATCAAGTCATTTGGACTG[CG]TAGGAGGGAGTGTCATTCTTGCCTCAGGTTTCTTTTAAGAGAAGGAATTTCCTTTCCATT | CGCAGTCCAAATGACTTGATTTTTGTGAGCCTGTAGCCATGTTTGACGCT | chr13:98563406-98564745 | 6 | 5.07e-05 | 0.1816602 | 5.07e-05 | 0.1816602 | 0.3111085 | 1.5103510 | 0.0031257 | FALSE | -0.1885167 | ||||||||||||||||||||||||||||
| cg16702666 | chr8 | 65712144 |
|
13773187 | TAATTACTCACTTAATAAATATTTACCATTCCCACTAATAAATATCRACC | II | NA | NA | NA | NA | NA | NA | chr8:65710990-65711722 | S_Shore | GTAACTGAACTTGGTTGCTCACTTGATAAATGTTTACCATTCCCACTGATAAATATCGGC[CG]TTCTAACCACGGTCCTATTCGAGGACTTGTGTGCTCTGTCAATGCAACACTTCTCTGGAA | CGGCCGATATTTATCAGTGGGAATGGTAAACATTTATCAAGTGAGCAACC | CYP7B1 | NM_004820 | TSS1500 | CYP7B1 | ENST00000310193.3 | TSS1500 | CYP7B1 | ENST00000310193.3 | TSS1500 | chr8:65712085-65712435 | 3 | 5.12e-05 | 0.1816602 | 5.12e-05 | 0.1816602 | -0.0464405 | 0.0337167 | 0.0000698 | FALSE | 3.3370364 | ||||||||||||||||||
| cg23042700 | chr9 | 37034662 |
|
52620859 | 70762574 | ACCTTCTATTAAAACATACACTTAAAAATCACAACCCTCTACACTATACA | ACCTTCTATTAAAACATACGCTTAAAAATCGCGACCCTCTACGCTATACG | I | C | Grn | rs7023441 | 0.060799 | NA | NA | NA | NA | chr9:37034135-37038341 | Island | TCTTCCAGCCGCACCTTCTATTAAGACATGCGCTTGGGGGTCGCGGCCCTCTGCGCTGTG[CG]CGGGGCCTGTGACATCTCCATGTGCAAACCCCGCTGCTTAGACGAGCGCAGGCCGGGTTT | ACCTTCTATTAAGACATGCGCTTGGGGGTCGCGGCCCTCTGCGCTGTGCG | PAX5;PAX5;PAX5;PAX5;PAX5;PAX5;PAX5;PAX5;PAX5;PAX5;PAX5;PAX5;PAX5 | NM_001280550;NM_016734;NM_001280556;NM_001280555;NM_001280554;NM_001280553;NM_001280552;NM_001280551;NM_001280549;NM_001280548;NM_001280547;NR_104000;NR_103999 | TSS200;TSS200;TSS200;TSS200;TSS200;TSS200;TSS200;TSS200;TSS200;TSS200;TSS200;TSS200;TSS200 | DMR | 9:37024246-37024851 | 9:37034084-37035335 | Unclassified | PAX5;PAX5;PAX5;PAX5 | ENST00000377847.2;ENST00000377852.2;ENST00000358127.4;ENST00000377849.3 | TSS1500;TSS1500;TSS1500;TSS200 | PAX5;PAX5;PAX5;PAX5 | ENST00000523145.1;ENST00000377840.2;ENST00000358127.4;ENST00000377849.3 | TSS1500;TSS1500;TSS1500;TSS200 | chr9:37034045-37035495 | 3 | 5.14e-05 | 0.1816602 | 5.14e-05 | 0.1816602 | -0.0534146 | 0.0446404 | 0.0000924 | FALSE | -6.0656815 | ||||||||||
| cg16850419 | chr17 | 74237210 |
|
74806166 | TAACTTTAAAACTACAAAAAACCTTAAACAACATATATAAAATTAAAAAC | II | NA | NA | NA | NA | NA | NA | chr17:74235758-74237211 | Island | GTTAATGCTGGTGACCGGCTAGGAAGATGCCGCCTCCCTCTCACGTGCGTCTATTCAAAG[CG]CTCCCAACTCTATACATGCTGTTTAAGGCTCCTTGTAGCCCTAAAGTTAGGAGAACATCG | CGCTCCCAACTCTATACATGCTGTTTAAGGCTCCTTGTAGCCCTAAAGTT | RNF157 | NM_052916 | TSS1500 | 17:71747399-71748993 | 17:74235489-74237336 | Promoter_Associated | RNF157 | ENST00000269391.5 | TSS1500 | RNF157 | ENST00000269391.5 | TSS1500 | chr17:74236805-74237530 | 3 | TRUE | 5.18e-05 | 0.1816602 | 5.18e-05 | 0.1816602 | 0.0533363 | 0.0445784 | 0.0000923 | FALSE | -4.6131953 | ||||||||||||||
| cg09136878 | chr1 | 236135584 |
|
29786955 | TTTAAAAAATATACTATCRAACACATTTAAAAACCACAAATCTCRAAAAC | II | NA | NA | NA | NA | NA | NA | OpenSea | ACTTGAGAACCAGAGCTGGGCCGTGACGCTGCTGCGGGGGACTCTGGGTCCCGTCTTCCC[CG]CTTTCGAGACCTGTGGTCTTCAAATGTGCTCGATAGTACACTCCCTAAAAGAATTTTTGC | TTAGGGAGTGTACTATCGAGCACATTTGAAGACCACAGGTCTCGAAAGCG | TRUE | 1:234201711-234202208 | 1:236134634-236135647 | Promoter_Associated | RP4-580N22.2 | ENST00000443207.1 | TSS1500 | RP4-580N22.2 | ENST00000443207.1 | TSS1500 | chr1:236135445-236135635 | 3 | TRUE | 5.19e-05 | 0.1816602 | 5.19e-05 | 0.1816602 | 0.0548570 | 0.0471640 | 0.0000976 | FALSE | -0.3636778 | |||||||||||||||||
| cg18468917 | chr12 | 47353065 |
|
30793587 | TCCTTTACAAATAAAAAATATCCTAAAAAACAAAACTTATATTCATTTAC | II | NA | NA | rs7485236 | 0.095890 | rs7485236 | 0.095890 | OpenSea | GTGTGTTTCATTCCTTTACAGGTGGGGAATGTCCTGAAGAGCAGGACTTATGTTCATTTA[CG]TTTGAATCACCCTCACCTCTGCCCCACCTCAACTCTTCATTAGCTCTCAACACCGTGATT | CCTTTACAGGTGGGGAATGTCCTGAAGAGCAGGACTTATGTTCATTTACG | TRUE | chr12:47352750-47353805 | 5 | chr12:47352945-47354247 | 6 | TRUE | 5.19e-05 | 0.1816602 | 5.19e-05 | 0.1816602 | -0.0915527 | 0.1313868 | 0.0002719 | FALSE | 2.9531379 | ||||||||||||||||||||||||
| cg02839725 | chr17 | 30823006 |
|
32806112 | TAAACRCTCTACTAAACTTACRAAACTACTCTTAATACTAAACAATAAAC | II | NA | NA | rs9889771 | 0.000204 | rs9889771 | 0.000204 | chr17:30822917-30823210 | Island | TGGTCCCGCTTTGAACGCTCTGCTGGACTTACGGAGCTGCTCTTAGTGCTGGGCAGTGAA[CG]CCAAGCTGTCGTGTCCACACGGCCAGGGGAACGCCAGGGCCAAGGCCAGCATGCGCTGAG | GAACGCTCTGCTGGACTTACGGAGCTGCTCTTAGTGCTGGGCAGTGAACG | MYO1D | NM_015194 | Body | TRUE | 17:27846674-27847323 | chr17:30822285-30823190 | 3 | TRUE | 5.20e-05 | 0.1816602 | 5.20e-05 | 0.1816602 | -0.2043137 | 0.6545427 | 0.0013546 | FALSE | 1.7580268 | |||||||||||||||||||||
| cg24991845 | chr22 | 39300583 |
|
82746256 | TAATCATAACTAACTTAACCACAAAACAAAATTCCTTTTATAAACCTAAC | II | NA | NA | rs6001308 | 0.272810 | rs6001308 | 0.272810 | OpenSea | CTCAGGTGATCTGCCTGCCTCGACCTCTCAAAGTGCTGGGATTACAGGCATGAGCCACCA[CG]CCAGGCCTATAAAAGGAATTTTGTCTTGTGGTTAAGTTAGCTATGATTAAAAGGGAATTA | CGCCAGGCCTATAAAAGGAATTTTGTCTTGTGGTTAAGTTAGCTATGATT | chr22:39299496-39300769 | 3 | 5.23e-05 | 0.1816602 | 5.23e-05 | 0.1816602 | 0.3128132 | 1.5363761 | 0.0031796 | FALSE | 0.1864859 | ||||||||||||||||||||||||||||
| cg00685193 | chr14 | 88851384 |
|
41785583 | TTTAAACTAAAAAATCTTACATAACAAAATACTTCCTACCCTAATCTAAC | II | NA | NA | NA | NA | NA | NA | chr14:88851883-88852285 | N_Shore | GTCAATGGACATTTGGGCTGAGAAGTCTTACATGACAGAATGCTTCCTACCCTGATCTGA[CG]TTATTTCCAAGGATTCAAAGGTAACTGCTTCAAAATTAAACAAATTATAGAAAGCCATCA | CGTCAGATCAGGGTAGGAAGCATTCTGTCATGTAAGACTTCTCAGCCCAA | SPATA7;SPATA7 | NM_001040428;NM_018418 | TSS1500;TSS1500 | 14:88851223-88852570 | Promoter_Associated | SPATA7;SPATA7;SPATA7;SPATA7;SPATA7;SPATA7 | ENST00000356583.5;ENST00000554102.1;ENST00000045347.7;ENST00000556553.1;ENST00000556553.1;ENST00000393545.4 | TSS1500;TSS1500;TSS1500;1stExon;5’UTR;TSS1500 | SPATA7;SPATA7;SPATA7;SPATA7;SPATA7;SPATA7;SPATA7;SPATA7;SPATA7;SPATA7;SPATA7;SPATA7;SPATA7;SPATA7;SPATA7;SPATA7 | ENST00000554168.1;ENST00000556870.1;ENST00000555534.1;ENST00000557724.1;ENST00000554102.1;ENST00000555515.1;ENST00000555401.1;ENST00000553626.1;ENST00000553885.1;ENST00000557567.1;ENST00000557248.1;ENST00000553908.1;ENST00000045347.7;ENST00000556553.1;ENST00000556553.1;ENST00000393545.4 | TSS1500;TSS1500;TSS1500;TSS1500;TSS1500;TSS1500;TSS1500;TSS1500;TSS1500;TSS1500;TSS1500;TSS1500;TSS1500;1stExon;5’UTR;TSS1500 | chr14:88851100-88851475 | 3 | TRUE | 5.24e-05 | 0.1816602 | 5.24e-05 | 0.1816602 | 0.0528842 | 0.0439158 | 0.0000909 | FALSE | -4.2764574 | |||||||||||||||
| cg01622439 | chr13 | 62515965 |
|
69646989 | 72796520 | ACAAAAATTACTCCTACTCCCCATATTACAAAAATATACACCTCCCTACA | ACGAAAATTACTCCTACTCCCCATATTACGAAAATATACACCTCCCTACG | I | A | Red | NA | NA | NA | NA | NA | NA | OpenSea | CCCGCCATATGGGAAGTAGGAGCAACCCCCCTTTCCCCGCCTGTCTCCTACGATCCACAT[CG]CAGGGAGGTGCACACCCCCGCAATATGGGGAGTAGGAGCAACCCCCGTCTCCCCCACTGG | CGCAGGGAGGTGCACACCCCCGCAATATGGGGAGTAGGAGCAACCCCCGT | 13:61413877-61414042 | TRUE | 5.26e-05 | 0.1816602 | 5.26e-05 | 0.1816602 | 0.0442240 | 0.0307380 | 0.0000636 | FALSE | 4.0676589 | ||||||||||||||||||||||||
| cg11446088 | chr14 | 87121082 |
|
81738345 | TCCATTCRCCATTATTACRAAAATAACACATTTAAAACTTATTCACTAAC | II | rs112997198 | 0.010064 | NA | NA | NA | NA | OpenSea | CCTTCCATTCTTCCATTCGCCATTGTTGCGGGGGTGACACATTTGAAACTTGTTCACTGG[CG]CCCCCTGGTGACAAACATTTCTTGCTGTTACAGGCCTCGTTTTGTTGAGCAAAAACATTT | CCATTCGCCATTGTTGCGGGGGTGACACATTTGAAACTTGTTCACTGGCG | chr14:87120940-87121210 | 3 | 5.27e-05 | 0.1816602 | 5.27e-05 | 0.1816602 | 0.0588008 | 0.0543505 | 0.0001125 | FALSE | -1.6944623 | ||||||||||||||||||||||||||||
| cg09684846 | chr16 | 10912718 |
|
3733460 | 69724844 | ACAACTACATCAACAAATAATATAAACAACACATAAACATAAATATAACA | ACGACTACGTCAACGAATAATATAAACGACGCATAAACGTAAATATAACG | I | A | Red | NA | NA | NA | NA | NA | NA | chr16:10912159-10912719 | Island | CGGGGGCGGGGGGCGGCTGCGTCAGCGAATGGTGTGGACGGCGCATAAACGTGGATGTAG[CG]AATGATAAGGCAGTGAATGAATGTCAGTGGTGGGCAGCCGCATTCAGGGTTGGGAGAAGG | CGCTACATCCACGTTTATGCGCCGTCCACACCATTCGCTGACGCAGCCGC | FAM18A | NM_001079512 | TSS200 | 16:10819716-10820260 | FAM18A;FAM18A | ENST00000299866.8;ENST00000572980.1 | TSS200;TSS1500 | FAM18A;FAM18A;FAM18A;FAM18A;FAM18A | ENST00000299866.8;ENST00000570692.1;ENST00000456096.2;ENST00000572980.1;ENST00000573360.1 | TSS200;TSS200;TSS1500;TSS1500;TSS1500 | chr16:10912425-10912815 | 3 | TRUE | 5.31e-05 | 0.1816602 | 5.31e-05 | 0.1816602 | 0.0564089 | 0.0500928 | 0.0001037 | FALSE | 3.0236820 | ||||||||||||
| cg12977960 | chr18 | 52609509 |
|
25784106 | ATCRTATTCCCAAATAAACRTTTACATTTCCTACTAAATTAATACCTCTC | II | NA | NA | NA | NA | NA | NA | OpenSea | ATATGCCAACCCACAGTCACTGGCAATAGTTACCCTGAACTGTGAAAAGGAACAAGGTAA[CG]AGAGGCACCAACTCAGCAGGAAATGTAAACGTCTACTTGGGAACACGATCAACACTCATG | CGAGAGGCACCAACTCAGCAGGAAATGTAAACGTCTACTTGGGAACACGA | CCDC68;CCDC68 | NM_001143829;NM_025214 | Body;Body | chr18:52609298-52611093 | 3 | chr18:52609407-52610232 | 5 | 5.31e-05 | 0.1816602 | 5.31e-05 | 0.1816602 | 0.0891935 | 0.1252669 | 0.0002592 | FALSE | 3.0202659 | |||||||||||||||||||||||
| cg18181561 | chr3 | 45106213 |
|
89609392 | TTTTACTTTCTTAATAAACATACTTTCACTTTATTTCATAAATTCACCTC | II | NA | NA | rs1915084 | 0.409709 | rs1915084 | 0.409709 | OpenSea | GAAAACGGTCCCAATCCAGACCCCAAGAGAGGGTTCTTGGACCATGTGCAAGAAAGAATA[CG]AGGTGAATCCATGAAATAAAGTGAAAGCATGTTTACTAAGAAAGTAAAAGAATAAAGAAT | CGAGGTGAATCCATGAAATAAAGTGAAAGCATGTTTACTAAGAAAGTAAA | chr3:45106014-45106832 | 6 | chr3:45104914-45107416 | 6 | 5.34e-05 | 0.1816602 | 5.34e-05 | 0.1816602 | 0.1892996 | 0.5647780 | 0.0011688 | FALSE | -1.6438424 | ||||||||||||||||||||||||||
| cg13900773 | chr12 | 130824015 |
|
11734129 | 32760879 | TCAACAATTTTTAAACATATAACACAATAATAATTCCCACATACACAACA | TCAACGATTTTTAAACGTATAACGCGATAATAATTCCCACGTACACGACG | I | T | Red | NA | NA | NA | NA | NA | NA | chr12:130823502-130824083 | Island | AGAATGTACCGCTCAACGGTTTTTAGGCGTGTGGCGCGGTGGTGGTTCCCACGTGCACGG[CG]TGGTCCTGAGCTCAGCGCCGGAGGGACGTTAGGTGGAAGCGTCTTTGGCAGAGCTGGTAG | CGCCGTGCACGTGGGAACCACCACCGCGCCACACGCCTAAAAACCGTTGA | PIWIL1 | NM_004764 | 5’UTR | 12:129387699-129390036 | 12:130823962-130824050 | Unclassified_Cell_type_specific | PIWIL1 | ENST00000245255.3 | 5’UTR | PIWIL1;PIWIL1;PIWIL1;PIWIL1;PIWIL1;PIWIL1 | ENST00000535956.1;ENST00000539995.1;ENST00000245255.3;ENST00000546060.1;ENST00000539400.1;ENST00000539995.1 | TSS200;1stExon;5’UTR;5’UTR;5’UTR;5’UTR | chr12:130823305-130824915 | 3 | TRUE | 5.34e-05 | 0.1816602 | 5.34e-05 | 0.1816602 | -0.0752805 | 0.0893210 | 0.0001849 | FALSE | -2.9959649 | ||||||||||
| cg04179952 | chr1 | 201619295 |
|
83695963 | CRAAACTCCTATTTAACCRAAAAACCTTTACCCTATAACTAATAAAAACC | II | NA | NA | NA | NA | NA | NA | chr1:201617041-201619788 | Island | GGCGTTAGCGCCGAGACTCCTGTTTGACCGGGAAGCCTTTGCCCTGTGGCTAATGGAAGC[CG]AGCAGGCGGGAAGGGAGGAACAAAGCTTGCTCGAGTGGAGGAAGCGCGCAGAGCTGTTCC | CGGCTTCCATTAGCCACAGGGCAAAGGCTTCCCGGTCAAACAGGAGTCTC | NAV1 | NM_020443 | Body | 1:199883665-199886396 | NAV1 | ENST00000391966.3 | 5’UTR | NAV1 | ENST00000391966.3 | 5’UTR | chr1:201617965-201619855 | 3 | TRUE | 5.34e-05 | 0.1816602 | 5.34e-05 | 0.1816602 | -0.0931267 | 0.1367048 | 0.0002829 | FALSE | -1.8293541 | ||||||||||||||||
| cg13353550 | chr12 | 48149200 |
|
25648958 | TTTATATAACTATTCTTAAAAAAATAACCCTATTTTATAACTCCRAAAAC | II | NA | NA | NA | NA | NA | NA | chr12:48152554-48153146 | N_Shelf | CACATAAGTACTGTATAACTATTAACTACTACTATTATTTGGATAGGTTGAATGAAAGTG[CG]TTCTCGGAGTTACAAAACAGGGCCACTTCCCCAAGAACAGTCACACAAAGAGAATCATCT | TTGTGTGACTGTTCTTGGGGAAGTGGCCCTGTTTTGTAACTCCGAGAACG | RAPGEF3;RAPGEF3;RAPGEF3 | NM_001098532;NM_006105;NM_001098531 | Body;Body;Body | 12:48149082-48149254 | Unclassified_Cell_type_specific | RAPGEF3;RAPGEF3 | ENST00000541821.1;ENST00000549347.1 | 5’UTR;3’UTR | RAPGEF3;RAPGEF3;SLC48A1;RAPGEF3;RAPGEF3;SLC48A1 | ENST00000541821.1;ENST00000549347.1;ENST00000552003.1;ENST00000482843.1;ENST00000479866.1;ENST00000548498.1 | 5’UTR;3’UTR;5’UTR;3’UTR;3’UTR;5’UTR | chr12:48149180-48149335 | 3 | TRUE | 5.36e-05 | 0.1816602 | 5.36e-05 | 0.1816602 | -0.0420365 | 0.0278682 | 0.0000577 | TRUE | 0.9761231 | |||||||||||||||
| cg24958687 | chr5 | 140515961 |
|
86760522 | ACAATACATTTTCCTAAAAAACCCCCACCATCTATAACTACAATTTCCAC | II | NA | NA | NA | NA | NA | NA | chr5:140516311-140517300 | N_Shore | GAAAACAGCAGAAATTCGCCTGAAAAGGGCATTGGATTTCGAGGCAACTCCATATTATAA[CG]TGGAAATTGTAGCCACAGATGGTGGGGGCCTTTCAGGAAAATGCACTGTGGCTATAGAAG | CGTGGAAATTGTAGCCACAGATGGTGGGGGCCTTTCAGGAAAATGCACTG | PCDHB5 | NM_015669 | 1stExon | 5:140496145-140496332 | PCDHB5;PCDHB5 | ENST00000231134.5;ENST00000537936.1 | 1stExon;1stExon | PCDHB5;PCDHB5 | ENST00000231134.5;ENST00000537936.1 | 1stExon;1stExon | TRUE | 5.36e-05 | 0.1816602 | 5.36e-05 | 0.1816602 | 0.0448410 | 0.0317168 | 0.0000656 | FALSE | -0.9418883 | ||||||||||||||||||
| cg13950578 | chr1 | 152467744 |
|
96789356 | 9755123 | ATTTACTACCATTTCTAAACTCCTACCTCTAATTCTATCACCCCCTACCA | ATTTACTACCATTTCTAAACTCCTACCTCTAATTCTATCGCCCCCTACCG | I | T | Red | rs12123907 | 0.179616 | NA | NA | NA | NA | OpenSea | TTAGCACTTCTGTGCACTGAGGGAGAGGTGGAGCATCCAATTTGCCTTACACACATGGGA[CG]GTAGGGGGCGACAGAATCAGAGGCAGGAGTTTAGAAATGGCAGTAAATCCTGGAGATTTT | CGGTAGGGGGCGACAGAATCAGAGGCAGGAGTTTAGAAATGGCAGTAAAT | 1:152467571-152467870 | Unclassified_Cell_type_specific | chr1:152467620-152467975 | 3 | 5.41e-05 | 0.1816602 | 5.41e-05 | 0.1816602 | 0.1574724 | 0.3917664 | 0.0008108 | FALSE | -1.0339525 | ||||||||||||||||||||||
| cg13386926 | chr5 | 156890399 |
|
59624986 | CAATAAACCTTTTATACCTTACTAAAACCATCCTCTTAAACTACAACCCC | II | NA | NA | rs73309962 | 0.019196 | rs76634949 | 0.044380 | chr5:156886969-156887440 | S_Shelf | CTGGTAGGTTCCTGGGCCAGGAGAGGATAGGGCCCAGGGCAGCTGAGCTCTCACAAGGTC[CG]GGGCTGTAGTCTAAGAGGATGGCCTCAGCAAGGTACAAAAGGCTCATTGTCAACCCTATC | CGGGGCTGTAGTCTAAGAGGATGGCCTCAGCAAGGTACAAAAGGCTCATT | NIPAL4 | NM_001099287 | Body | TRUE | NIPAL4 | ENST00000521390.1 | 5’UTR | ADAM19;NIPAL4;NIPAL4 | ENST00000517951.1;ENST00000521390.1;ENST00000519946.1 | 3’UTR;5’UTR;5’UTR | chr5:156890201-156892298 | 6 | TRUE | 5.41e-05 | 0.1816602 | 5.41e-05 | 0.1816602 | 0.1178547 | 0.2194982 | 0.0004543 | FALSE | 1.8920174 | ||||||||||||||||
| cg12876533 | chr5 | 1137928 |
|
45783925 | AATACRTCATCAAAACCCTTAATCTAACTAACRAAAAAAACAACACAAAC | II | NA | NA | NA | NA | NA | NA | OpenSea | CTGCTCGCCCAGGTGCGTCATCAGAACCCTTGGTCTGGCTGGCGGAGAAGACAGCACAAG[CG]CCTGGATCTGCCCCTCCCCCGGCACCAGCTCCCCGGGGCCTGGCGCACTGTGAGGAGAAT | GTGCGTCATCAGAACCCTTGGTCTGGCTGGCGGAGAAGACAGCACAAGCG | 5:1190704-1191009 | chr5:1137303-1146769 | 6 | TRUE | 5.42e-05 | 0.1816602 | 5.42e-05 | 0.1816602 | 0.0455464 | 0.0327834 | 0.0000678 | FALSE | 1.3301478 | ||||||||||||||||||||||||||
| cg04110918 | chr1 | 4794912 |
|
15636277 | 6636313 | CCAAACAAAATTTCTAAAACCCAAAAAACATCTTCTACTTCCAAAACCCA | CCGAACAAAATTTCTAAAACCCGAAAAACATCTTCTACTTCCGAAACCCG | I | A | Red | NA | NA | rs116230643 | 0.014757 | NA | NA | OpenSea | TCTCACCTTCCCCCGGACAAGGTTTCTAAGGCCCGGGAAGCATCTTCTGCTTCCGAGGCC[CG]AAACAGTGGCGTTTCCTCTTCCCCGAGCACTCAGCCTCCATCTGGCTTTCTGTCCACCGG | CGGGCCTCGGAAGCAGAAGATGCTTCCCGGGCCTTAGAAACCTTGTCCGG | AJAP1;AJAP1 | NM_018836;NM_001042478 | Body;Body | 1:4694772-4694975 | chr1:4794550-4794936 | 4 | TRUE | 5.42e-05 | 0.1816602 | 5.42e-05 | 0.1816602 | -0.0391698 | 0.0242493 | 0.0000502 | FALSE | 1.1948911 | |||||||||||||||||||
| cg21807306 | chr20 | 60602346 |
|
47689215 | AAAACTAAATAAAAATTTTCCAAAAACAAATCCCATCAATCACAATACCC | II | rs56126715 | 0.023788 | NA | NA | NA | NA | OpenSea | CAGCCTCGCAGCCCTGAGAGCCGAGCAGCGTCGTCAAAAGAGCAAGGTGCAAACCCTAAA[CG]GGCACTGTGACTGATGGGACTTGCCCCTGGAAAACCTTCACCCAGCCTTCAGCATCGGCC | CGGGCACTGTGACTGATGGGACTTGCCCCTGGAAAACCTTCACCCAGCCT | TAF4 | NM_003185 | Body | TRUE | 20:60600881-60602414 | Promoter_Associated | chr20:60602225-60602615 | 3 | 5.46e-05 | 0.1816602 | 5.46e-05 | 0.1816602 | 0.0776817 | 0.0955241 | 0.0001977 | FALSE | 2.5404209 | ||||||||||||||||||||||
| cg07694864 | chr17 | 40700509 |
|
61732947 | RCATCAACAACTAATACAAAAAACRCCTAATTATAAAATAACRCAAAATC | II | NA | NA | NA | NA | NA | NA | chr17:40700164-40700859 | Island | GGGCCAGAGCTCCTCTCCCGCCGCCGCAGGTCTTCCTCACCGCTATGCGCGCCCCGAAGC[CG]ACCCTGCGCTACTTCACAACCAGGCGCTTCCTGCACCAGCTGCTGATGCGCCTGGACGAC | CATCAGCAGCTGGTGCAGGAAGCGCCTGGTTGTGAAGTAGCGCAGGGTCG | 17:37952842-37954336 | 17:40700006-40700889 | Unclassified | chr17:40699905-40700875 | 3 | TRUE | 5.47e-05 | 0.1816602 | 5.47e-05 | 0.1816602 | -0.0796416 | 0.1004331 | 0.0002078 | FALSE | -4.3712776 | |||||||||||||||||||||||
| cg25227088 | chr6 | 116218610 |
|
1610537 | TTCTAAAAATATAATCTACRCTACTCCAAAACRCTTTACTAAATATCTAC | II | NA | NA | NA | NA | NA | NA | OpenSea | AGTCAATGGGTTAAGACCCAGAACTTAATTGTCTATAGTTTGGGCCATTGAAAAACTTAA[CG]CAGATATTTAGCAAAGCGTTCTGGAGCAGCGCAGACCACACTCTCAGAACGAGATTTCTC | CGCAGATATTTAGCAAAGCGTTCTGGAGCAGCGCAGACCACACTCTCAGA | chr6:116217473-116218717 | 6 | 5.51e-05 | 0.1816602 | 5.51e-05 | 0.1816602 | -0.0466980 | 0.0345812 | 0.0000716 | FALSE | 2.0148743 | ||||||||||||||||||||||||||||
| cg21625068 | chr1 | 144997139 |
|
36671166 | 89631467 | AACTTAAACCAAAAAAAAACCTTAAAAATCACTAATTTTAACCAAACACA | AACTTAAACCAAAAAAAAACCTTAAAAATCACTAATTTTAACCAAACGCG | I | A | Red | NA | NA | rs2590128 | 0.400000 | NA | NA | OpenSea | TGACCTTGAGATCCGCCCGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCAC[CG]CGTCTGGCCAAAATTAGTGATTTTTAAGGCCCTTTCCTGGTCTAAGCTCTTCAAGGTGAT | CGCGTCTGGCCAAAATTAGTGATTTTTAAGGCCCTTTCCTGGTCTAAGCT | PDE4DIP;PDE4DIP;PDE4DIP;NBPF20;NBPF9 | NM_001195260;NM_001198832;NM_022359;NM_001278267;NM_001277444 | TSS200;Body;Body;Body;Body | PDE4DIP;PDE4DIP;PDE4DIP;PDE4DIP;PDE4DIP;PDE4DIP;PDE4DIP | ENST00000533396.1;ENST00000497529.1;ENST00000527063.1;ENST00000532803.1;ENST00000533163.1;ENST00000528552.1;ENST00000533259.1 | 3’UTR;3’UTR;3’UTR;3’UTR;3’UTR;3’UTR;5’UTR | chr1:144991165-144999606 | 6 | 5.52e-05 | 0.1816602 | 5.52e-05 | 0.1816602 | -0.1174507 | 0.2187940 | 0.0004528 | FALSE | 2.8155931 | ||||||||||||||||||
| cg21116077 | chr1 | 10920786 |
|
76765267 | ATCCAAATCRAAAAACCAATATATACCRAAATCCTAAAATAAAAAATCAC | II | rs552630 | 0.166597 | NA | NA | NA | NA | OpenSea | AGGGGGCAGAGGTCCAGGTCGAGAGACCAGTGTGTGCCGAGGTCCTGGAGTGGAGGGTCA[CG]GCGCACGGCAGGTAAAGAGCTGGAAAGGCATGGAAGCTGACCCTGGAGGTGGAGAGGCGG | TCCAGGTCGAGAGACCAGTGTGTGCCGAGGTCCTGGAGTGGAGGGTCACG | TRUE | chr1:10920025-10921050 | 3 | TRUE | 5.53e-05 | 0.1816602 | 5.53e-05 | 0.1816602 | 0.0554413 | 0.0487773 | 0.0001009 | FALSE | 2.7628124 | ||||||||||||||||||||||||||
| cg06865376 | chr8 | 39976739 |
|
70776558 | AAAAAATCTCTAAATAACTATATATTCATCCATTATTTAATACAAAAAAC | II | NA | NA | NA | NA | NA | NA | OpenSea | TCCAAAAGTCCCAGAGAGGGAAATACAGGATTTCCCCTGGCTGTCAGCACAGTGAGTCAG[CG]TCTCCTGCACTAAACAATGGATGAATACACAGCCACTTAGAGACCTTTCATCTTTATCCT | AAAGGTCTCTAAGTGGCTGTGTATTCATCCATTGTTTAGTGCAGGAGACG | chr8:39976615-39976615 | TRUE | RP11-359E19.2 | ENST00000521257.1 | 5’UTR | RP11-359E19.2 | ENST00000521257.1 | 5’UTR | chr8:39976525-39976835 | 3 | 5.57e-05 | 0.1816602 | 5.57e-05 | 0.1816602 | 0.0462543 | 0.0339893 | 0.0000703 | FALSE | -3.1819754 | ||||||||||||||||||||
| cg01708330 | chr20 | 20484969 |
|
98794171 | ATACAATAACTATTAAACTCAAACCTACTTACCTTCTTAATAAAAATATC | II | NA | NA | NA | NA | NA | NA | OpenSea | ATTTACTGGAAGTACAGTAACTGTTAGACTCAAACCTACTTGCCTTCTTAGTAAGGATGT[CG]TTTTGACTCTGATGTACTCTTACCCTGTTTCCATCCCTGCCTTAGTCCCCTTGCTAGCAC | CGACATCCTTACTAAGAAGGCAAGTAGGTTTGAGTCTAACAGTTACTGTA | RALGAPA2 | NM_020343 | Body | chr20:20484885-20485075 | 3 | 5.57e-05 | 0.1816602 | 5.57e-05 | 0.1816602 | -0.0481487 | 0.0368383 | 0.0000762 | FALSE | 3.3677811 | |||||||||||||||||||||||||
| cg19107832 | chr9 | 110061337 |
|
77783194 | TACAAAATACTCTACTTAAAATCATAAAAAATAATAACCTCTTTATTTCC | II | NA | NA | NA | NA | NA | NA | OpenSea | TATATGGTATTTGCAAAATACTCTGCTTGGAGTCATAAGGGGTGGTAACCTCTTTATTTC[CG]TCTCCTCATCTATAAAATTGAGTGGGTGACATTTCCTTTTGTCCCAGAGTTTTGAGGATT | CGGAAATAAAGAGGTTACCACCCCTTATGACTCCAAGCAGAGTATTTTGC | RAD23B;RAD23B;RAD23B | NM_002874;NM_001244724;NM_001244713 | Body;5’UTR;Body | RAD23B;RAD23B | ENST00000374678.2;ENST00000416373.2 | 5’UTR;5’UTR | RAD23B;RAD23B | ENST00000374678.2;ENST00000416373.2 | 5’UTR;5’UTR | chr9:110061164-110062359 | 6 | 5.60e-05 | 0.1816602 | 5.60e-05 | 0.1816602 | -0.0392453 | 0.0244970 | 0.0000507 | FALSE | 2.1092996 | |||||||||||||||||||
| cg02138082 | chr1 | 978573 |
|
9764962 | CTAATCTAAAAAAAACACAAAAACTCAATAATCCCACAAACCCCCCCTCC | II | NA | NA | NA | NA | NA | NA | chr1:975496-980305 | Island | CTCCACCATCCCCTCCCTGGAAGAGGGACTGCTGCGTGGGGCTGGGGGCTTTGCCTGCAG[CG]GAGGGGGGGCTTGTGGGACCACTGAGCCCCTGTGTCCTTCCCAGACCAGGCCCCGTCCCC | CGGAGGGGGGGCTTGTGGGACCACTGAGCCCCTGTGTCCTTCCCAGACCA | AGRN | NM_198576 | Body | chr1:972075-983939 | 6 | TRUE | 5.60e-05 | 0.1816602 | 5.60e-05 | 0.1816602 | 0.0880489 | 0.1233154 | 0.0002552 | FALSE | 2.6268822 | |||||||||||||||||||||||
| cg07326812 | chr6 | 21998442 |
|
21615250 | AAAACRAATTTTAAAAAACCACCATACTACAAAATAAACATTATCCTCCC | II | NA | NA | rs9466231 | 0.000192 | rs9466231 | 0.000192 | OpenSea | TCTTTTTGCAAATGATTTATCAAGACTTGAACAGCAACTGAGCAACTCTTCTTGAAAAAA[CG]GGAGGATAATGTTTATTTTGCAGTATGGTGGTCTTTTAAAATTCGTTTTTTTTTGCTTGG | CGGGAGGATAATGTTTATTTTGCAGTATGGTGGTCTTTTAAAATTCGTTT | CASC15 | NR_015410 | Body | TRUE | chr6:21996260-21998477 | 6 | 5.61e-05 | 0.1816602 | 5.61e-05 | 0.1816602 | 0.0890751 | 0.1262246 | 0.0002612 | FALSE | 1.7446503 | ||||||||||||||||||||||||
| cg15157214 | chr6 | 28950533 |
|
31649242 | TACTATATAAATATTTCTAAAACTATCCCCTAACRCCCAATTAAAACAAC | II | NA | NA | NA | NA | NA | NA | OpenSea | CTAGAGCCTCGGTGGTTTAGACACCTACTCTATCTTCCTCGGATTTCTCTGTAAGTTTCA[CG]CTGCTCCAACTGGGCGCTAGGGGATAGCCCTAGAAATACCTACACAGTAATTTAATATTC | CGCTGCTCCAACTGGGCGCTAGGGGATAGCCCTAGAAATACCTACACAGT | chr6:28949725-28950635 | 3 | 5.64e-05 | 0.1816602 | 5.64e-05 | 0.1816602 | 0.0608450 | 0.0589694 | 0.0001220 | FALSE | -1.8188834 | ||||||||||||||||||||||||||||
| cg10681981 | chr5 | 77994078 |
|
66606893 | AATTTAACAACAATAATACTAAAACAAATTTATACAAACTTACCACAACC | II | NA | NA | rs340083 | 0.190237 | rs340083 | 0.190237 | OpenSea | CTGATGTCAAGCTACCAACCTAAAGTAACTGAGTGCGGAGCTGGAAGAGATGTGTGTAGT[CG]GTTGTGGCAAGCCTGTACAAATCTGTTCCAGCACCACTGTTGCTAAACTTGGTATTTATC | CGGTTGTGGCAAGCCTGTACAAATCTGTTCCAGCACCACTGTTGCTAAAC | LHFPL2 | ENST00000514587.1 | 3’UTR | chr5:77994060-77994575 | 3 | 5.65e-05 | 0.1816602 | 5.65e-05 | 0.1816602 | 0.2301306 | 0.8436528 | 0.0017460 | FALSE | 1.4751267 | |||||||||||||||||||||||||
| cg10778042 | chr1 | 210900467 |
|
71705121 | CACATCTCTATCTATAACCAAAATAATTTCTCCTACAATATAAAAAACTC | II | rs1934623 | 0.250422 | NA | NA | NA | NA | OpenSea | CTTATGTCTTGATGGTGTGTGGGATTAGGAAGAGCACAAATGTCTTTTCTTACTCTATCA[CG]AGTTCCTCATACTGTAGGAGAAACTATTCTGGCCACAGACAGAGATGTGTATTTCAATGG | CGAGTTCCTCATACTGTAGGAGAAACTATTCTGGCCACAGACAGAGATGT | KCNH1;KCNH1 | NM_002238;NM_172362 | Body;Body | chr1:210899505-210900876 | 6 | 5.77e-05 | 0.1816602 | 5.77e-05 | 0.1816602 | 0.0523699 | 0.0438665 | 0.0000908 | FALSE | -1.5917744 | |||||||||||||||||||||||||
| cg06534081 | chr11 | 31006183 |
|
77788307 | TCATAACCTAAACATTTCATATCCTCAAACAAAAATAAACRTAACRTAAC | II | NA | NA | NA | NA | NA | NA | OpenSea | ATTCCTATTGTTCATAACCTGGACATTTCATATCCTCAAACAAAGGTGGGCGTAACGTGA[CG]TTCAATCCCCAAGGATTTGCAAACTCTACCCGTGACTTTAAGAAGCAGCTGTTTAGTTGA | CGTCACGTTACGCCCACCTTTGTTTGAGGATATGAAATGTCCAGGTTATG | DCDC5 | NM_020869 | 5’UTR | DCDC5;DCDC5 | ENST00000339794.5;ENST00000406071.2 | 5’UTR;5’UTR | DCDC5;DCDC5;DCDC5;DCDC5;DCDC1 | ENST00000339794.5;ENST00000483396.1;ENST00000406071.2;ENST00000437348.1;ENST00000342355.4 | 5’UTR;3’UTR;5’UTR;5’UTR;3’UTR | chr11:31006005-31006370 | 3 | 5.79e-05 | 0.1816602 | 5.79e-05 | 0.1816602 | -0.0505727 | 0.0409346 | 0.0000847 | FALSE | 3.0171613 | |||||||||||||||||||
| cg03632120 | chr19 | 36198177 |
|
22766149 | AAAAAATTAACAAATTACTCTAAACCTCATAACTAAAAAAATTAACTATC | II | NA | NA | rs73590561 | 0.116088 | NA | NA | chr19:36195267-36195475 | S_Shelf | AAGAACAATTAATGGTATGCATGTATATTATGAGGAGGGGAGGGTAAAGAATAAGCTAGA[CG]ATAGTTAACCTCTCCAGCCATGAGGCTCAGAGTAATCTGTCAATCTCTTGTCATGCATTC | AGAGATTGACAGATTACTCTGAGCCTCATGGCTGGAGAGGTTAACTATCG | AD000671.1;AC002314.3;AC002314.2 | ENST00000354109.4;ENST00000442282.1;ENST00000450758.1 | 5’UTR;5’UTR;TSS200 | AD000671.1;AD000671.1;AC002314.3;AD000671.1;AC002314.2 | ENST00000354109.4;ENST00000426659.1;ENST00000442282.1;ENST00000451726.1;ENST00000450758.1 | 5’UTR;5’UTR;5’UTR;5’UTR;TSS200 | TRUE | 5.79e-05 | 0.1816602 | 5.79e-05 | 0.1816602 | -0.0537894 | 0.0463143 | 0.0000958 | FALSE | 2.8798373 | ||||||||||||||||||||||
| cg13654337 | chr15 | 89378000 |
|
18718159 | TAAAAAATTCTAAAATACAACCAAAATAAAACACCRCTAACCTAAAACAC | II | NA | NA | NA | NA | NA | NA | OpenSea | ACATCACCAGGCATGCACCGTGGAGGGAAGGTCACAGGAGGTGTCTGTAATGGGACTGCA[CG]TGTTCTAGGCCAGCGGTGCTCCATCTTGGCTGCACCTTAGAACCTTCCAAGCTCTAAAAA | GGAAGGTTCTAAGGTGCAGCCAAGATGGAGCACCGCTGGCCTAGAACACG | ACAN;ACAN | NM_013227;NM_001135 | 5’UTR;5’UTR | TRUE | 15:89377213-89378541 | Unclassified | ACAN;ACAN;ACAN;ACAN | ENST00000561243.1;ENST00000439576.2;ENST00000558207.1;ENST00000559004.1 | TSS1500;5’UTR;5’UTR;5’UTR | ACAN;ACAN;ACAN;ACAN | ENST00000561243.1;ENST00000439576.2;ENST00000558207.1;ENST00000559004.1 | TSS1500;5’UTR;5’UTR;5’UTR | chr15:89377009-89378194 | 6 | chr15:89377269-89378319 | 6 | 5.83e-05 | 0.1816602 | 5.83e-05 | 0.1816602 | 0.0408034 | 0.0266811 | 0.0000552 | FALSE | 2.0711113 | ||||||||||||||
| cg27398401 | chr1 | 56976548 |
|
81763141 | TCTCCCCAACTCCTCTATAACAACACTTAACACTCTAAATTAAAATTATC | II | NA | NA | NA | NA | NA | NA | OpenSea | CATATATATTACACATGGTCCCTGCCCCCAAGAACTTACAGCCTAAAAGAAGACACCCAT[CG]ACAATTTCAATCCAGAGTGTTAAGTGCTGTTACAGAGGAGCTGGGGAGAGGCTGCATAGT | CGACAATTTCAATCCAGAGTGTTAAGTGCTGTTACAGAGGAGCTGGGGAG | PPAP2B;PPAP2B | NM_177414;NM_003713 | Body;Body | TRUE | PPAP2B | ENST00000459962.1 | 3’UTR | PPAP2B;PPAP2B | ENST00000472957.1;ENST00000459962.1 | 3’UTR;3’UTR | chr1:56975472-56977555 | 6 | TRUE | 5.86e-05 | 0.1816602 | 5.86e-05 | 0.1816602 | -0.0407084 | 0.0265841 | 0.0000550 | FALSE | 3.5508526 | |||||||||||||||||
| cg00903308 | chr7 | 27177068 |
|
13614576 | AAAAAATATATCTATCACTAAAAACTTTATAAAAACATCCAACCTCAACC | II | NA | NA | NA | NA | NA | NA | chr7:27179062-27179511 | N_Shore | GAACAAACGAGCCCCCGCACATTGCCGCTGAGGAGGAGCACAGACACGCACTTCTGCCAC[CG]GCTGAGGCTGGATGTCTTCATAAAGCCCTCAGTGACAGACATATTTTTTCTTAGTAAGTT | CGGCTGAGGCTGGATGTCTTCATAAAGCCCTCAGTGACAGACATATTTTT | HOXA3;HOXA-AS3 | ENST00000467897.2;ENST00000518848.1 | 3’UTR;5’UTR | HOXA3;HOXA3;HOXA3;HOXA3;HOXA3;HOXA-AS3 | ENST00000522788.1;ENST00000521779.1;ENST00000521401.1;ENST00000518451.1;ENST00000467897.2;ENST00000518848.1 | 5’UTR;5’UTR;3’UTR;3’UTR;3’UTR;5’UTR | chr7:27176820-27177490 | 3 | TRUE | 5.94e-05 | 0.1816602 | 5.94e-05 | 0.1816602 | 0.0439482 | 0.0310665 | 0.0000643 | FALSE | -2.9182273 | ||||||||||||||||||||
| cg23658462 | chr19 | 1290552 |
|
33609904 | ATCCCTCRAAATCACRACRAAAACAATAAATTATACATTCATAAAAATCC | II | rs77041859 | 0.040219 | NA | NA | NA | NA | chr19:1290409-1290637 | Island | GCCCTACGTGGGTCCCTCGGGGTCACGGCGGAGGCAGTGGGTTGTGCATTCATGGGGGTC[CG]GGTGGTAGCGTTTCTGTGGAGCCGGTGGTCTCCTTGTCATCCATGAGGGTCCTGCCCCGG | TCCCTCGGGGTCACGGCGGAGGCAGTGGGTTGTGCATTCATGGGGGTCCG | EFNA2 | NM_001405 | Body | 19:1241376-1241660 | MUM1 | ENST00000344663.3 | 5’UTR | MUM1 | ENST00000344663.3 | 5’UTR | chr19:1278148-1297808 | 6 | chr19:1290551-1291417 | 6 | TRUE | 5.94e-05 | 0.1816602 | 5.94e-05 | 0.1816602 | -0.0979841 | 0.1544490 | 0.0003196 | FALSE | 2.7267633 | ||||||||||||||
| cg22489931 | chr15 | 93595923 |
|
83605955 | CCCACTAACCCTTTCAACCTACTAATATACATACTTATCCACTTAAAATC | II | NA | NA | NA | NA | NA | NA | chr15:93595240-93595691 | S_Shore | ACAGATGGTGAAAAATTTCCTGCAGGTGGTAGGAAAGGGGTCCTTCTACCCAGCCTATGG[CG]ACCCCAAGTGGACAAGCATGCACACCAGCAGGCTGAAAGGGCTAGTGGGGATCCTCCCAC | CCACTAGCCCTTTCAGCCTGCTGGTGTGCATGCTTGTCCACTTGGGGTCG | RGMA;RGMA;RGMA;RGMA;RGMA;RGMA | NM_001166289;NM_001166288;NM_020211;NM_001166286;NM_001166283;NM_001166287 | Body;Body;Body;Body;Body;Body | 15:93595789-93596092 | Unclassified_Cell_type_specific | RGMA;RGMA;RGMA | ENST00000555584.1;ENST00000556658.1;ENST00000538818.1 | 3’UTR;5’UTR;5’UTR | RGMA;RGMA;RGMA;RGMA | ENST00000554387.1;ENST00000555584.1;ENST00000556658.1;ENST00000538818.1 | 3’UTR;3’UTR;5’UTR;5’UTR | chr15:93595685-93596075 | 3 | TRUE | 5.94e-05 | 0.1816602 | 5.94e-05 | 0.1816602 | 0.0729780 | 0.0856799 | 0.0001773 | FALSE | -1.6565211 | |||||||||||||||
| cg07208425 | chr17 | 78166385 |
|
5606580 | 69754217 | AAAAAAACAACCATACCTCTATAAAACTAACAAAACTACAATCACTATCA | AAAAAAACGACCGTACCTCTATAAAACTAACGAAACTACAATCGCTATCG | I | T | Red | NA | NA | rs11658460 | 0.104435 | NA | NA | chr17:78165077-78165293 | S_Shore | GGAGCCCTGTCCACGGGAGAAGCAGCGGCTGGTGCGGATGCATGCCATCTGCCCCAGAGA[CG]ACAGCGACTGCAGCCTCGTCAGCTCCACAGAGGTACGGCCGCTCCTCCCGCCTCCCTCAC | CGACAGCGACTGCAGCCTCGTCAGCTCCACAGAGGTACGGCCGCTCCTCC | CARD14;CARD14 | NM_052819;NM_024110 | Body;Body | 17:75780720-75780987 | CARD14 | ENST00000573754.1 | 5’UTR | CARD14;CARD14;CARD14;CARD14;CARD14 | ENST00000575666.1;ENST00000573754.1;ENST00000571861.1;ENST00000574148.1;ENST00000575666.1 | 1stExon;5’UTR;5’UTR;5’UTR;5’UTR | chr17:78166065-78166475 | 3 | TRUE | 5.96e-05 | 0.1816602 | 5.96e-05 | 0.1816602 | 0.0767203 | 0.0947432 | 0.0001961 | FALSE | 3.9981585 | ||||||||||||
| cg18486231 | chr14 | 21156471 |
|
23716287 | AAATACTTTCCTAACTATATAAAATCRATAAAATAACRTACTTAACATCC | II | NA | NA | rs1010458 | 0.236575 | rs1010458 | 0.236575 | chr14:21152483-21152740 | S_Shelf | ACCTTCTCTGGAAGTGCTTTCCTGGCTGTATGAAATCGATGGAATAACGTGCTTAGCATC[CG]TTCATGAAACCAAATGATGTGATACGATAAATAGGATGTGATATGATAAATGATAAATAG | CGGATGCTAAGCACGTTATTCCATCGATTTCATACAGCCAGGAAAGCACT | RNASE4;ANG;ANG;RNASE4 | NM_194431;NM_001097577;NM_001145;NM_002937 | TSS1500;TSS1500;5’UTR;5’UTR | RNASE4;ANG;RNASE4;RNASE4;ANG;RNASE4;ANG;RNASE4;AL163636.6 | ENST00000555835.1;ENST00000336811.6;ENST00000398001.3;ENST00000397995.2;ENST00000554073.1;ENST00000304704.4;ENST00000397990.4;ENST00000555597.1;ENST00000553909.1 | 5’UTR;5’UTR;5’UTR;5’UTR;5’UTR;5’UTR;TSS1500;TSS1500;5’UTR | RNASE4;ANG;RNASE4;RNASE4;ANG;RNASE4;ANG;RNASE4;AL163636.6 | ENST00000555835.1;ENST00000336811.6;ENST00000398001.3;ENST00000397995.2;ENST00000554073.1;ENST00000304704.4;ENST00000397990.4;ENST00000555597.1;ENST00000553909.1 | 5’UTR;5’UTR;5’UTR;5’UTR;5’UTR;5’UTR;TSS1500;TSS1500;5’UTR | chr14:21147912-21157418 | 6 | TRUE | 5.97e-05 | 0.1816602 | 5.97e-05 | 0.1816602 | 0.2536623 | 1.0360678 | 0.0021442 | FALSE | 2.1276017 | |||||||||||||||||
| cg13491848 | chr4 | 120991796 |
|
95758306 | TAATATTTAATCCACATTATAATAAAAAAAACTACCCAAACTCTAAACTC | II | NA | NA | NA | NA | NA | NA | chr4:120987617-120988156 | S_Shelf | GCAATACAGGGTAGTATTTGATCCACATTATGGTAGAAAGAGCTGCCCAAACTCTGAACT[CG]TACTAGTTCTTATTTATCAAAGTAACACCCAAGATTCTAAAAGCTTTGGAGGGACTTCTT | CGAGTTCAGAGTTTGGGCAGCTCTTTCTACCATAATGTGGATCAAATACT | 4:120991736-120991803 | Unclassified_Cell_type_specific | RP11-679C8.2 | ENST00000503073.1 | 5’UTR | RP11-679C8.2;RP11-679C8.2;RP11-679C8.2;RP11-679C8.2 | ENST00000503073.1;ENST00000511064.1;ENST00000504106.1;ENST00000508362.1 | 5’UTR;5’UTR;5’UTR;5’UTR | TRUE | 5.99e-05 | 0.1816602 | 5.99e-05 | 0.1816602 | -0.0451735 | 0.0328805 | 0.0000680 | FALSE | 2.7631591 | ||||||||||||||||||||
| cg25273084 | chr4 | 37903858 |
|
31715849 | AACTTACTTAATTACAAATTCCTTTCTAATAAACTACCTACTAAATCTTC | II | NA | NA | NA | NA | NA | NA | OpenSea | TCCCTGCCTGTGCATTCCCTGACCACCATGCCCATGCTGCCCTGGGTTGTGGCTGAGGTG[CG]AAGACTCAGCAGGCAGTCCACCAGAAAGGAACCTGTAACCAAGCAAGTCCGGCTTTGCGT | ACTTGCTTGGTTACAGGTTCCTTTCTGGTGGACTGCCTGCTGAGTCTTCG | TBC1D1;TBC1D1 | NM_015173;NM_001253912 | Body;Body | TRUE | TBC1D1;TBC1D1 | ENST00000454732.2;ENST00000454732.2 | 1stExon;5’UTR | TBC1D1;TBC1D1 | ENST00000454732.2;ENST00000454732.2 | 1stExon;5’UTR | chr4:37903785-37904110 | 3 | 6.00e-05 | 0.1816602 | 6.00e-05 | 0.1816602 | 0.0767751 | 0.0949964 | 0.0001966 | FALSE | 2.9954067 | ||||||||||||||||||
| cg06720751 | chr1 | 226456256 |
|
77731551 | AACCTCCTTACAAAATTAACCTTTATCTAATATCTAAAAACTTAAATTTC | II | NA | NA | NA | NA | NA | NA | OpenSea | ATACTTAGGAAAACCTCCTTGCAAGGTTGGCCTTTGTCTGGTATCTGGGAACTTGGATTT[CG]GAAGTGTTCCCACTGTTCCCTAATTAATAATGGTGGTTTTACTGTGTCTAGATTGTGCAA | ACCTCCTTGCAAGGTTGGCCTTTGTCTGGTATCTGGGAACTTGGATTTCG | LIN9;LIN9;LIN9 | NM_001270410;NM_001270409;NM_173083 | Body;Body;Body | chr1:226456200-226456475 | 3 | 6.01e-05 | 0.1816602 | 6.01e-05 | 0.1816602 | -0.0410885 | 0.0272197 | 0.0000563 | FALSE | 1.3549773 | |||||||||||||||||||||||||
| cg04535966 | chr3 | 188034983 |
|
47660197 | RATAAATCTTCCAAAACACCCACRTTCTTTACAAAATATTTCTACTAATC | II | NA | NA | NA | NA | NA | NA | OpenSea | ATGATGACGACGATGAGTCTTCCAGGACACCCACGTTCTTTGCAAGATATTTCTGCTAAT[CG]TTTCTACCAGAATCAGTTGGAAAACTTTTTTTTTTAAGTTTTTTTTTTTTCTCTGTATCT | ATGAGTCTTCCAGGACACCCACGTTCTTTGCAAGATATTTCTGCTAATCG | LPP;LPP;LPP | NM_001167672;NM_001167671;NM_005578 | 5’UTR;5’UTR;5’UTR | TRUE | LPP;LPP;LPP | ENST00000448637.1;ENST00000312675.4;ENST00000543006.1 | 5’UTR;5’UTR;5’UTR | LPP;LPP;LPP;LPP;LPP;LPP;LPP;LPP;LPP;LPP;LPP | ENST00000448637.1;ENST00000416784.1;ENST00000430340.1;ENST00000414139.1;ENST00000454789.1;ENST00000426274.1;ENST00000420410.1;ENST00000443217.1;ENST00000312675.4;ENST00000543006.1;ENST00000457242.1 | 5’UTR;5’UTR;5’UTR;5’UTR;5’UTR;5’UTR;5’UTR;5’UTR;5’UTR;5’UTR;5’UTR | TRUE | 6.03e-05 | 0.1816602 | 6.03e-05 | 0.1816602 | -0.0428954 | 0.0296830 | 0.0000614 | FALSE | 3.3340412 | |||||||||||||||||||
| cg07455789 | chr2 | 232419317 |
|
54632268 | 2654242 | AAAACTTACAAATAATAAACAAAAACCAACCTAACCCACAACCCCACACA | AAAACTTACAAATAATAAACAAAAACCAACCTAACCCACAACCCCACGCG | I | A | Red | NA | NA | NA | NA | NA | NA | OpenSea | CTGCACACAGGGCTCACTGGAGACACACTGACATCTCGATTCCTTTTCCCACCCACTGCC[CG]CGTGGGGCTGTGGGCCAGGCTGGTCCCTGTCCACTATTTGTAAGCCTTCCCAGCCCTTTC | AAGGCTTACAAATAGTGGACAGGGACCAGCCTGGCCCACAGCCCCACGCG | TRUE | chr2:232419060-232419370 | 3 | TRUE | 6.03e-05 | 0.1816602 | 6.03e-05 | 0.1816602 | 0.0401548 | 0.0260129 | 0.0000538 | FALSE | -3.3753689 | ||||||||||||||||||||||
| cg26452224 | chr19 | 56595658 |
|
76762349 | TACACAAAACAATACTTAACAAATAAAAAATACTAAACCAAAATTTAATC | II | NA | NA | NA | NA | NA | NA | chr19:56598038-56600296 | N_Shelf | TCATAGTGGAAAGTTCTGAGCCGGGTGGGTGTGGGGGGCTAGTTTTATAATTCATCCAGT[CG]ACTAAATCTTGGCTCAGCACCTTCCACCTGCCAAGTACTGTTCTGTGTATGAGAAAATTT | ACACAGAACAGTACTTGGCAGGTGGAAGGTGCTGAGCCAAGATTTAGTCG | chr19:56594562-56599626 | 6 | TRUE | 6.09e-05 | 0.1816602 | 6.09e-05 | 0.1816602 | 0.0553828 | 0.0495821 | 0.0001026 | FALSE | 2.0680424 | ||||||||||||||||||||||||||
| cg13432087 | chr8 | 41523480 |
|
87722186 | AACAACRCRTATTAAACTTATATTTACAAAACTAATTCACAAATATAACC | II | NA | NA | NA | NA | NA | NA | OpenSea | CACTGAGCAGGAACAACGCGTATTAAACTTGTATTTACAGAGCTGATTCACAAATGTAGC[CG]CAGCAGCTGCGGCTGGAAAAAATTTCACTTTCTAGATCAGGTTGTTCCTCTCTGAGTGGC | CGGCTACATTTGTGAATCAGCTCTGTAAATACAAGTTTAATACGCGTTGT | ANK1;ANK1;ANK1;ANK1;ANK1;ANK1;ANK1;ANK1 | NM_001142445;NM_020478;NM_020476;NM_020480;NM_020475;NM_020477;NM_001142446;NM_000037 | TSS1500;TSS1500;Body;TSS1500;Body;Body;Body;Body | ANK1;ANK1;ANK1 | ENST00000522231.1;ENST00000314214.8;ENST00000457297.1 | TSS1500;TSS1500;TSS1500 | ANK1;ANK1;ANK1;ANK1;ANK1;ANK1 | ENST00000335651.6;ENST00000522231.1;ENST00000314214.8;ENST00000457297.1;ENST00000518715.1;ENST00000524227.1 | TSS1500;TSS1500;TSS1500;TSS1500;TSS200;3’UTR | chr8:41522745-41523595 | 3 | TRUE | 6.10e-05 | 0.1816602 | 6.10e-05 | 0.1816602 | -0.0462838 | 0.0346328 | 0.0000717 | FALSE | 3.4099762 | ||||||||||||||||||
| cg09511024 | chr10 | 63151255 |
|
38725278 | CTAATATTCTTAATACTAAAACAAACAAAATCCCTCTCACTAAACCTAAC | II | NA | NA | NA | NA | NA | NA | OpenSea | ATGAAACTCATCACTGCATTTATTGTATGAATGGTGTTAAGAGTGCTGTTCAATAAATGT[CG]CCAGGCCCAGTGAGAGGGATCCTGTCTGTCTTAGTACCAAGAACACTAGTACCTCTTCTG | CGCCAGGCCCAGTGAGAGGGATCCTGTCTGTCTTAGTACCAAGAACACTA | chr10:63150806-63150806 | 6.12e-05 | 0.1816602 | 6.12e-05 | 0.1816602 | -0.0440511 | 0.0313903 | 0.0000650 | FALSE | 3.4953817 | |||||||||||||||||||||||||||||
| cg07295522 | chr3 | 156192838 |
|
75763971 | CTACRTCTTCTTCTTTTAAAACAATTAAAAACATTAAACTCRTAACTCCC | II | NA | NA | NA | NA | NA | NA | OpenSea | TGCTCTGCGTGCTGCGTCTTCTTCTTTTAAAGCAGTTGAAGGCATTGGGCTCGTGGCTCC[CG]CTGGTTACAGTGCTCACCTTTTCCAGGTTCATTTCACTTTTGTGATTTCATCAACTAAAA | CGGGAGCCACGAGCCCAATGCCTTCAACTGCTTTAAAAGAAGAAGACGCA | KCNAB1;KCNAB1;KCNAB1;KCNAB1;KCNAB1 | NM_001308217;NM_172160;NM_003471;NM_172159;NM_001308222 | Body;Body;Body;Body;Body | 3:156192468-156193036 | Unclassified | KCNAB1 | ENST00000497291.1 | 5’UTR | KCNAB1;KCNAB1;KCNAB1;KCNAB1 | ENST00000489036.1;ENST00000476362.1;ENST00000461717.1;ENST00000497291.1 | 3’UTR;5’UTR;5’UTR;5’UTR | chr3:156192275-156193357 | 6 | 6.13e-05 | 0.1816602 | 6.13e-05 | 0.1816602 | -0.0435514 | 0.0306967 | 0.0000635 | FALSE | 1.9264079 | |||||||||||||||||
| cg21684640 | chr7 | 33843957 |
|
24743266 | TATCACCAACTTCCACATTAAAATTTTATCAATTCTTCCTCAAATATACC | II | NA | NA | NA | NA | NA | NA | OpenSea | AAGGTTTCCCTTGTCACCAGCTTCCACATTAGAGTTTTATCAGTTCTTCCTCAGATATGC[CG]CTTACATCTCAGACCCCCTGGCAGTGTCTGGCTCCGGCTTCACTATCTTTACCTCCATGA | CGGCATATCTGAGGAAGAACTGATAAAACTCTAATGTGGAAGCTGGTGAC | RP11-89N17.4;RP11-89N17.4 | ENST00000420185.1;ENST00000440034.1 | TSS1500;TSS1500 | RP11-89N17.4;RP11-89N17.4 | ENST00000420185.1;ENST00000440034.1 | TSS1500;TSS1500 | chr7:33843880-33844070 | 3 | 6.16e-05 | 0.1816602 | 6.16e-05 | 0.1816602 | -0.0509518 | 0.0420501 | 0.0000870 | FALSE | 2.3773373 | ||||||||||||||||||||||
| cg15258046 | chr17 | 56832551 |
|
62738984 | TTATTTCAAAATCTCCAAACTTCCAACCTTAACRTTAAAAAACTCAAATC | II | NA | NA | NA | NA | NA | NA | chr17:56832961-56833986 | N_Shore | TCTCCGGAGACAGAGTTGAGTTAAGGAAAAATGCACTTTCGGAAAGCTTTGGCGACTGAA[CG]ACCTGAGTTCTCCAACGCCAAGGCTGGAAGTTTGGAGACCTTGAAACAAGTAAATTACCA | CGACCTGAGTTCTCCAACGCCAAGGCTGGAAGTTTGGAGACCTTGAAACA | PPM1E;PPM1E | NM_014906;NR_048561 | TSS1500;TSS1500 | PPM1E | ENST00000308249.1 | TSS1500 | PPM1E | ENST00000308249.1 | TSS1500 | chr17:56832385-56834435 | 3 | 6.16e-05 | 0.1816602 | 6.16e-05 | 0.1816602 | -0.0397225 | 0.0255598 | 0.0000529 | FALSE | 3.0400755 | ||||||||||||||||||
| cg09163369 | chr1 | 210001066 |
|
30698220 | TAATATTTTTATTACAATATACTATAAAATCACTACATTCRACTATCTCC | II | rs660975 | 0.471531 | NA | NA | NA | NA | chr1:210001129-210001428 | N_Shore | TAAATGTTGGTTGATATTTTTATTGCAGTATACTGTAAAGTCACTGCATTCGACTATCTC[CG]CTACTACACATTTACGCAGACTGATTTCCATAACCAAAACACAAGCACAAAGCTCATGCC | CGGAGATAGTCGAATGCAGTGACTTTACAGTATACTGCAATAAAAATATC | C1orf107 | NM_014388 | TSS1500 | 1:210000917-210001809 | Promoter_Associated | DIEXF | ENST00000491415.1 | TSS1500 | DIEXF | ENST00000491415.1 | TSS1500 | chr1:210000880-210001095 | 3 | TRUE | 6.16e-05 | 0.1816602 | 6.16e-05 | 0.1816602 | 0.0646857 | 0.0677800 | 0.0001403 | FALSE | -2.3924428 | |||||||||||||||
| cg25968721 | chr16 | 10674992 |
|
46692245 | ACAATAACTAACRTCTATAAAACAAATACCATAAACCAAACATTATAAAC | II | NA | NA | NA | NA | NA | NA | chr16:10673880-10674735 | S_Shore | CCCCTGTCTCAGTTTCCTCTTCTGGGAATGGGAGTGATTATAGGTCGGAAGGTGGTAATA[CG]TCCACAATGTTTGGCTCATGGTACCTGCTCCATAGACGTCAGCCATTGTTATTTTTATCA | CGTCCACAATGTTTGGCTCATGGTACCTGCTCCATAGACGTCAGCCATTG | EMP2 | NM_001424 | TSS1500 | EMP2 | ENST00000359543.3 | TSS1500 | EMP2;EMP2 | ENST00000342147.4;ENST00000359543.3 | TSS1500;TSS1500 | chr16:10673451-10675118 | 6 | chr16:10670178-10676152 | 6 | 6.17e-05 | 0.1816602 | 6.17e-05 | 0.1816602 | -0.0394856 | 0.0252645 | 0.0000523 | FALSE | 2.9445994 | ||||||||||||||||
| cg11303839 | chr7 | 75405967 |
|
5803918 | AATTACTTTTTATATTCACCATATAAATTTCCTTCTCRTAAAATATTCAC | II | NA | NA | NA | NA | NA | NA | OpenSea | AAAGCAAGCAAGAAAGAAAGAAAGAAGAAGGAAAGAAAAAAAGAAAGATAATGGCTGAGG[CG]TGAACACTTTACGAGAAGGAAACCCACATGGTGAATATAAAAAGCAACTTGGTTTTATTA | GTTGCTTTTTATATTCACCATGTGGGTTTCCTTCTCGTAAAGTGTTCACG | CCL26 | NM_006072 | 5’UTR | 7:75405958-75406120 | Unclassified_Cell_type_specific | CCL26 | ENST00000394905.2 | 5’UTR | CCL26 | ENST00000394905.2 | 5’UTR | chr7:75405945-75406255 | 3 | TRUE | 6.23e-05 | 0.1816602 | 6.23e-05 | 0.1816602 | 0.0665597 | 0.0719304 | 0.0001489 | FALSE | -1.8083277 | ||||||||||||||||
| cg12235430 | chr20 | 13203343 |
|
72708240 | CCTAACTAAACAATTCTATTCCTAAATCAAAACTCACATTATATCTAACC | II | NA | NA | NA | NA | NA | NA | chr20:13200670-13202616 | S_Shore | TTTAGCAATGGGATTCTGTTTATCCATTTCAACTTCAGGGCAAGGAGAGGGCGTAGTGGA[CG]GTCAGACATAATGTGAGTTCTGACTTAGGAATAGAATTGCCCAGCTAGGCATTTCCTGCC | CGGTCAGACATAATGTGAGTTCTGACTTAGGAATAGAATTGCCCAGCTAG | ISM1 | NM_080826 | Body | chr20:13200264-13203427 | 6 | 6.25e-05 | 0.1816602 | 6.25e-05 | 0.1816602 | 0.0646973 | 0.0679923 | 0.0001407 | FALSE | 2.6572783 | ||||||||||||||||||||||||
| cg14019050 | chr9 | 107690770 |
|
71622904 | TTCCACTAATACCCTTAACTACCRAAAACRTAAACTAAAAAATCTACRAC | II | NA | NA | NA | NA | NA | NA | chr9:107689847-107690798 | Island | CCCTTCCCCCGCCCGGGCCCGCCGGCCTAAGACGCGCGGGAAGCGCTGGGCTCGGGGCTG[CG]CCGCAGACTCTCTAGTCCACGTTCCCGGCAGCCAAGGGCACCAGTGGAATTTGCTTCCTC | CGCCGCAGACTCTCTAGTCCACGTTCCCGGCAGCCAAGGGCACCAGTGGA | ABCA1 | NM_005502 | TSS1500 | 9:106729346-106730595 | 9:107688413-107690983 | Promoter_Associated | RP11-217B7.2;ABCA1;ABCA1 | ENST00000435915.1;ENST00000423487.2;ENST00000374736.3 | 5’UTR;TSS1500;TSS1500 | RP11-217B7.2;ABCA1;ABCA1 | ENST00000435915.1;ENST00000423487.2;ENST00000374736.3 | 5’UTR;TSS1500;TSS1500 | chr9:107690720-107691035 | 3 | TRUE | 6.27e-05 | 0.1816602 | 6.27e-05 | 0.1816602 | 0.0738412 | 0.0886175 | 0.0001834 | FALSE | 0.8792611 | ||||||||||||||
| cg14122666 | chr15 | 32949591 |
|
1647467 | TTCCCACCTAACCTTAAATACTCTACTCTATATTAATATTAACCTTAAAC | II | NA | NA | rs66959609 | 0.149772 | rs66959609 | 0.149772 | OpenSea | CCAGAATCAGTTTCCCACCTGGCCTTAAGTGCTCTGCTCTGTATTGGTGTTGACCTTAGG[CG]TGAGAAACATGTGACTGTAATGAGGATGGATGCTTTCTAAAAGCTCATAAATAGCAACTT | CGCCTAAGGTCAACACCAATACAGAGCAGAGCACTTAAGGCCAGGTGGGA | SCG5;SCG5 | NM_003020;NM_001144757 | Body;Body | RP11-1000B6.2 | ENST00000486285.1 | 3’UTR | RP11-1000B6.2 | ENST00000486285.1 | 3’UTR | chr15:32949460-32950030 | 3 | 6.30e-05 | 0.1816602 | 6.30e-05 | 0.1816602 | -0.1196488 | 0.2329050 | 0.0004820 | FALSE | 2.7669384 | |||||||||||||||||||
| cg10749197 | chr7 | 152607879 |
|
75749216 | CTACTCTAACTACTAAAAACRAAACTATCAAATTCTATCTCTACRAAAAC | II | NA | NA | rs6950409 | 0.000407 | rs6950409 | 0.000407 | OpenSea | GGAGGGATCTGCTGCTCTAACTGCTGGGGGCGGGGCTGTCAGGTTCTGTCTCTGCGGGGG[CG]TCACTGCCACTGCGGTCACCCCTCCCTGGGGTGGCCACCTCCCAGGGCTAATTGCAGGTA | CGCCCCCGCAGAGACAGAACCTGACAGCCCCGCCCCCAGCAGTTAGAGCA | chr7:152607620-152607995 | 3 | 6.31e-05 | 0.1816602 | 6.31e-05 | 0.1816602 | -0.0961702 | 0.1505342 | 0.0003115 | FALSE | 2.0220289 | ||||||||||||||||||||||||||||
| cg13018448 | chr6 | 33385440 |
|
67672249 | 90750393 | TCACCTCCTACTCTCAAACCTCTCTACTCCTATCTTTTATTTAAATACCA | TCGCCTCCTACTCTCAAACCTCTCTACTCCTATCTTTTATTTAAATACCG | I | A | Red | NA | NA | NA | NA | NA | NA | chr6:33385678-33386262 | N_Shore | GGCCATGGTCAGCAAGACTCGGGGTAGCAACAAAAGGCGGGAGGCCACAGGCAGCAGCGC[CG]GCATCCAAACAAAAGACAGGAGCAGAGAGGCCTGAGAGCAGGAGGCGAATTCGATCTCTC | TCGCCTCCTGCTCTCAGGCCTCTCTGCTCCTGTCTTTTGTTTGGATGCCG | CUTA;CUTA;CUTA;CUTA;CUTA | NM_001014433;NM_001014840;NM_001014838;NM_015921;NM_001014837 | Body;Body;Body;1stExon;Body | 6:33493292-33494175 | 6:33385034-33386783 | Promoter_Associated | CUTA | ENST00000440279.2 | 1stExon | CUTA;CUTA;CUTA;CUTA;CUTA;CUTA;CUTA;CUTA;CUTA | ENST00000462802.1;ENST00000482684.1;ENST00000465956.1;ENST00000487637.1;ENST00000465956.1;ENST00000462802.1;ENST00000487637.1;ENST00000440279.2;ENST00000479249.1 | 3’UTR;3’UTR;3’UTR;3’UTR;1stExon;1stExon;1stExon;1stExon;TSS200 | chr6:33384905-33385555 | 3 | TRUE | 6.32e-05 | 0.1816602 | 6.32e-05 | 0.1816602 | -0.0490721 | 0.0391999 | 0.0000811 | FALSE | -3.0461037 | ||||||||||
| cg04486778 | chr21 | 47394431 |
|
62782183 | 26668827 | AATATAAATAAATCCACTAACCAAAAACAACCTACAATTAAATCTCCCCA | AATATAAATAAATCCGCTAACCGAAAACAACCTACGATTAAATCTCCCCG | I | A | Red | NA | NA | NA | NA | NA | NA | chr21:47392495-47394536 | Island | GGACCAGGATGGGCTGCACTTTCCCCACCCGCGGCCCTGGGACCCGCCCCACCCGAAGCC[CG]GGGAGATCCAACCGCAGGCTGCCTCCGGCCAGCGGACTCATTCACACTCCGCAAACAGGC | CGGGGAGATCCAACCGCAGGCTGCCTCCGGCCAGCGGACTCATTCACACT | chr21:47394030-47394030 | DMR | 21:46218116-46219180 | chr21:47393585-47394915 | 3 | TRUE | 6.33e-05 | 0.1816602 | 6.33e-05 | 0.1816602 | 0.0450722 | 0.0330820 | 0.0000685 | FALSE | -3.7104025 | |||||||||||||||||||
| cg04330421 | chr14 | 103852338 |
|
31778265 | ACAATAAAATCCTAATAAACATTTTACTACACTTTAATTCTACACAATAC | II | NA | NA | NA | NA | NA | NA | chr14:103851217-103852708 | Island | CGTGGACTCGAGGACGCTGGTCGCCGGCCTCCTAGGGCTGTGCTGTTTTGTTTTGACCCT[CG]CATTGTGCAGAATTAAAGTGCAGTAAAATGTCCACTAGGACCCCATTGCCAACGGTGAAT | CGCATTGTGCAGAATTAAAGTGCAGTAAAATGTCCACTAGGACCCCATTG | MARK3;MARK3;MARK3;MARK3;MARK3;MARK3;MARK3;MARK3;MARK3;MARK3 | NM_001128919;NM_002376;NM_001128921;NM_001128920;NM_001128918;NM_001128919;NM_002376;NM_001128921;NM_001128920;NM_001128918 | 5’UTR;5’UTR;5’UTR;5’UTR;5’UTR;1stExon;1stExon;1stExon;1stExon;1stExon | 14:102920865-102922479 | 14:103850976-103853625 | Promoter_Associated | MARK3;MARK3;MARK3;MARK3;MARK3;MARK3;MARK3;MARK3;MARK3;MARK3;MARK3;MARK3;MARK3;MARK3;MARK3 | ENST00000411530.1;ENST00000440884.3;ENST00000440884.3;ENST00000416682.2;ENST00000416682.2;ENST00000429436.2;ENST00000429436.2;ENST00000303622.9;ENST00000303622.9;ENST00000335102.5;ENST00000216288.7;ENST00000216288.7;ENST00000553942.1;ENST00000553942.1;ENST00000411530.1 | 1stExon;5’UTR;1stExon;5’UTR;1stExon;5’UTR;1stExon;5’UTR;1stExon;TSS200;5’UTR;1stExon;5’UTR;1stExon;5’UTR | MARK3;MARK3;MARK3;MARK3;MARK3;MARK3;MARK3;MARK3;MARK3;MARK3;MARK3;MARK3;MARK3;MARK3;MARK3;MARK3;MARK3;MARK3;MARK3;MARK3;MARK3 | ENST00000561225.1;ENST00000411530.1;ENST00000440884.3;ENST00000440884.3;ENST00000416682.2;ENST00000416682.2;ENST00000429436.2;ENST00000429436.2;ENST00000303622.9;ENST00000303622.9;ENST00000558223.1;ENST00000335102.5;ENST00000216288.7;ENST00000216288.7;ENST00000553942.1;ENST00000553942.1;ENST00000560417.1;ENST00000560417.1;ENST00000411530.1;ENST00000559328.1;ENST00000560603.1 | TSS1500;1stExon;5’UTR;1stExon;5’UTR;1stExon;5’UTR;1stExon;5’UTR;1stExon;TSS200;TSS200;5’UTR;1stExon;5’UTR;1stExon;5’UTR;1stExon;5’UTR;5’UTR;5’UTR | chr14:103851905-103852875 | 3 | 6.35e-05 | 0.1816602 | 6.35e-05 | 0.1816602 | 0.0393761 | 0.0252597 | 0.0000523 | FALSE | -4.4137892 | |||||||||||||||
| cg02107357 | chr3 | 74213809 |
|
1784830 | ATCCACCTCCTAAAATTATATCCAAAATTAAATAACAAAATTTTTAACAC | II | NA | NA | NA | NA | NA | NA | OpenSea | TGCTAAGCTATAAATAATTATATATCATAGGTAACATTTCTTGAGTCACTGAGATTATCA[CG]TGTCAAAAATTTTGTCACTTAATCTTGGACATAATTTCAGGAGGTGGATCCTATTTTAGC | CGTGTCAAAAATTTTGTCACTTAATCTTGGACATAATTTCAGGAGGTGGA | Y_RNA | ENST00000391283.1 | TSS1500 | Y_RNA | ENST00000391283.1 | TSS1500 | 6.35e-05 | 0.1816602 | 6.35e-05 | 0.1816602 | -0.0777111 | 0.0983878 | 0.0002036 | FALSE | 1.1510943 | ||||||||||||||||||||||||
| cg14942092 | chr10 | 133787629 |
|
6760855 | CATAATCTCAACCCCAAAAAACTTCCTTCCTATACCCAAAAAATATATAC | II | NA | NA | rs4880263 | 0.332768 | rs4880263 | 0.332768 | OpenSea | CATCCCTCAACCCCGACTTGAAGACATCCCTCTGCCCACTCTCATGGCAGTGACTGTCCA[CG]CACACACTCCCTGGGTACAGGAAGGAAGCCCCCTGGGGCTGAGACCATGTATCTGTCCAG | CGCACACACTCCCTGGGTACAGGAAGGAAGCCCCCTGGGGCTGAGACCAT | BNIP3 | NM_004052 | Body | chr10:133782153-133788321 | 6 | 6.35e-05 | 0.1816602 | 6.35e-05 | 0.1816602 | -0.1798892 | 0.5272336 | 0.0010911 | FALSE | 2.4571184 | |||||||||||||||||||||||||
| cg03515879 | chr14 | 52656358 |
|
66810232 | TAATTACAACCAAAATACTAAACACATATAATAAAAATACRCATATACAC | II | rs10498443 | 0.000139 | NA | NA | NA | NA | OpenSea | AAAGTAGTCACACACATTAAGGGAAAGCATGAGATATAATGCAGACTGTCGAAGATAAGA[CG]TGCACATGCGTATTTTTATTACATGTGTTTAGCATTTTGGTTGCAACTACCTAAAGTTGT | CGTGCACATGCGTATTTTTATTACATGTGTTTAGCATTTTGGTTGCAACT | chr14:52655813-52656534 | 4 | chr14:52655974-52656446 | 3 | 6.37e-05 | 0.1816602 | 6.37e-05 | 0.1816602 | -0.0562528 | 0.0515892 | 0.0001068 | FALSE | 3.0211544 | ||||||||||||||||||||||||||
| cg03445591 | chr10 | 119866207 |
|
20739566 | AAAAAAATCCCAAAAAAACACCCCAAAACAAACAATATACTAAAAAAATC | II | NA | NA | NA | NA | NA | NA | OpenSea | CCCCCTAGCTGTCTGATAAAATGAGTTTGCATTTAAAGCCCGAAAGCTGCTTGGTCTTGG[CG]ACCCTTCCAGTACACTGTTTGCCCTGGGGTGCTCCTTTGGGACCCTTCCTAAGAGAAGCT | GAAGGGTCCCAAAGGAGCACCCCAGGGCAAACAGTGTACTGGAAGGGTCG | CASC2;CASC2 | NR_026939;NR_026940 | Body;Body | CASC2 | ENST00000435944.1 | 5’UTR | CASC2;CASC2;CASC2;CASC2 | ENST00000414722.1;ENST00000435944.1;ENST00000454857.1;ENST00000439517.1 | 5’UTR;5’UTR;5’UTR;5’UTR | chr10:119866000-119866270 | 3 | 6.38e-05 | 0.1816602 | 6.38e-05 | 0.1816602 | 0.0805818 | 0.1058912 | 0.0002191 | FALSE | 1.5013132 | |||||||||||||||||||
| cg26736055 | chr14 | 100627507 |
|
32746165 | ACTTTAACCCCTAACCTTTAAATTAAAAAACTTCCAAAATCAAAACCTTC | II | NA | NA | NA | NA | NA | NA | chr14:100625319-100626461 | S_Shore | GCTGGGGCATGACTTTGGCCCCTGACCTTTGAATTAAAAAGCTTCCAAAATCAGAGCCTT[CG]CCCCTGTGTTGAACTCCGTGAGATCTGCCGCCCTGAGCCCCAGCTCCACCCTCAGGACAA | CTTTGGCCCCTGACCTTTGAATTAAAAAGCTTCCAAAATCAGAGCCTTCG | DEGS2 | NM_206918 | TSS1500 | DEGS2 | ENST00000305631.5 | TSS1500 | DEGS2 | ENST00000305631.5 | TSS1500 | chr14:100624910-100628011 | 6 | 6.38e-05 | 0.1816602 | 6.38e-05 | 0.1816602 | -0.1328331 | 0.2877915 | 0.0005956 | FALSE | 3.2138012 | ||||||||||||||||||
| cg09489048 | chr11 | 67169787 |
|
8658834 | CCAAAATACRCTAAAAATTCAACCRTAACTATCTTTAAATATAATCAACC | II | NA | NA | NA | NA | NA | NA | chr11:67168616-67169098 | S_Shore | CCTGGACCTCGCATTCACGGAGGACCCCCCACTTCTTCGTGGGTCTCTGTGGCGCCCAGG[CG]GCTGACCACACTCAAAGACAGCTACGGCTGAATTCCCAGCGCACTTTGGTCCTTGGGGCA | CAAAGTGCGCTGGGAATTCAGCCGTAGCTGTCTTTGAGTGTGGTCAGCCG | PPP1CA;PPP1CA;PPP1CA | NM_002708;NM_001008709;NM_206873 | TSS1500;TSS1500;TSS1500 | 11:67168258-67169974 | Promoter_Associated | PPP1CA;PPP1CA;PPP1CA;PPP1CA | ENST00000532446.1;ENST00000312989.7;ENST00000358239.4;ENST00000376745.4 | TSS1500;TSS1500;TSS1500;TSS1500 | PPP1CA;PPP1CA;PPP1CA;PPP1CA;PPP1CA;PPP1CA;PPP1CA;PPP1CA | ENST00000532446.1;ENST00000526510.1;ENST00000527663.1;ENST00000312989.7;ENST00000529724.1;ENST00000358239.4;ENST00000376745.4;ENST00000537694.1 | TSS1500;TSS1500;TSS1500;TSS1500;TSS1500;TSS1500;TSS1500;3’UTR | chr11:67168920-67169850 | 3 | 6.41e-05 | 0.1816602 | 6.41e-05 | 0.1816602 | 0.0390424 | 0.0248834 | 0.0000515 | FALSE | -3.4575129 | ||||||||||||||||
| cg06713767 | chr8 | 107742712 |
|
75635261 | 12779269 | CACTATTTTACATTTTACAAAATATCATATAATTAAAATCATATAATACA | CACTATTTTACGTTTTACAAAATATCATATAATTAAAATCATATAATACG | I | T | Red | NA | NA | NA | NA | NA | NA | OpenSea | CACCGGTCTTTCCACTGTTTTGCGTTTTGCAGAGTGTCATATAGTTGGAATCATATAGTA[CG]TAGCCTTTTCAGATTGGCTTCTTTCACTTAGCAATTTTTATTTAAGACTCCTTCATGTCT | CACTGTTTTGCGTTTTGCAGAGTGTCATATAGTTGGAATCATATAGTACG | OXR1;OXR1;OXR1;OXR1;OXR1;OXR1 | NM_018002;NM_001198533;NM_001198532;NM_181354;NM_001198535;NM_001198534 | Body;Body;Body;Body;Body;Body | RNU7-84P;OXR1 | ENST00000516083.1;ENST00000521592.1 | TSS1500;5’UTR | RNU7-84P;OXR1 | ENST00000516083.1;ENST00000521592.1 | TSS1500;5’UTR | 6.42e-05 | 0.1816602 | 6.42e-05 | 0.1816602 | 0.0580689 | 0.0550519 | 0.0001139 | FALSE | 1.2969626 | |||||||||||||||||
| cg25418670 | chr11 | 30344373 |
|
1767440 | ACACAATTTCCACTAAATTAAATCRTATTTATACATCTCTACACCTATAC | II | NA | NA | NA | NA | NA | NA | chr11:30344536-30344946 | N_Shore | CCTTTTAACTCACACTCTCCTTCAGGGGTCGGGGTATTTGGGTGCAAAAGTTTACTATCA[CG]CACAGGTGTAGAGATGTACAAATACGATCCAATTTAGTGGAAACTGTGTCTTGTAAGAGA | CGCACAGGTGTAGAGATGTACAAATACGATCCAATTTAGTGGAAACTGTG | C11orf46 | NM_152316 | TSS1500 | 11:30343914-30345099 | Promoter_Associated | C11orf46 | ENST00000282032.3 | TSS1500 | C11orf46;C11orf46 | ENST00000532047.1;ENST00000282032.3 | TSS1500;TSS1500 | chr11:30344242-30345663 | 6 | chr11:30343581-30348799 | 6 | TRUE | 6.45e-05 | 0.1816602 | 6.45e-05 | 0.1816602 | 0.0501642 | 0.0411232 | 0.0000851 | FALSE | -1.9892967 | |||||||||||||
| cg20214105 | chr5 | 140579119 |
|
9709211 | TTTAAATAACTTTCACCAAACTATAAAAATCTATAAAAACACTTAATAAC | II | NA | NA | NA | NA | NA | NA | chr5:140580723-140581625 | N_Shore | AGTGAATGGAATTTAGGTAGCTTTCACCAAACTGTGAAAATCTATGGAGACACTTGGTGG[CG]CTGCAGGATAACATCGTGAAAAATATATTCACTGGATGGCGTTGTGAACACTGATATCCA | CGCCACCAAGTGTCTCCATAGATTTTCACAGTTTGGTGAAAGCTACCTAA | PCDHB11 | NM_018931 | TSS1500 | RDMR | PCDHB11;PCDHB11;PCDHB11 | ENST00000354757.3;ENST00000536825.1;ENST00000536699.1 | TSS1500;TSS1500;TSS200 | PCDHB11;PCDHB11;PCDHB11 | ENST00000354757.3;ENST00000536825.1;ENST00000536699.1 | TSS1500;TSS1500;TSS200 | chr5:140579020-140579795 | 3 | 6.46e-05 | 0.1816602 | 6.46e-05 | 0.1816602 | 0.0363625 | 0.0216159 | 0.0000447 | FALSE | -3.2669308 | |||||||||||||||||
| cg16340188 | chr1 | 153820642 |
|
99726319 | TAATATAATATTTCTTACACCTTAAAAAATTCTTCCCATAACTTCCTATC | II | NA | NA | rs76099002 | 0.107502 | rs76099002 | 0.107502 | OpenSea | CCATACCAACTTGGTATAGTATTTCTTACACCTTAGAAAATTCTTCCCATGACTTCCTGT[CG]TATTCCAGTCACTGCCCCATGTCCCTGAACCCTTCTACAGCAAAATTCCTCAAGAGTTAC | CGACAGGAAGTCATGGGAAGAATTTTCTAAGGTGTAAGAAATACTATACC | GATAD2B | NM_020699 | 5’UTR | GATAD2B | ENST00000368655.4 | 5’UTR | GATAD2B | ENST00000368655.4 | 5’UTR | 6.46e-05 | 0.1816602 | 6.46e-05 | 0.1816602 | 0.3140423 | 1.6124282 | 0.0033370 | FALSE | 1.7053419 | |||||||||||||||||||||
| cg09722985 | chr12 | 26150525 |
|
53793164 | AAACCTTCTAAAACTTACATACACAAATTATCTATAACAATAAACACCTC | II | NA | NA | NA | NA | NA | NA | OpenSea | TATATGCTTATACCTGTTTTTACGGGTTTACATAGGGGCATTTTTGAATAAAACTTGTAA[CG]AGGTGTTTATTGTTACAGATAATTTGTGCATGCAAGTTTTAGAAGGCTTGAAATGATCTT | CGAGGTGTTTATTGTTACAGATAATTTGTGCATGCAAGTTTTAGAAGGCT | RASSF8;RASSF8;RASSF8 | NM_007211;NM_001164748;NM_001164747 | 5’UTR;5’UTR;5’UTR | RASSF8;RASSF8;RASSF8;RASSF8;RASSF8 | ENST00000381352.3;ENST00000538081.1;ENST00000405154.1;ENST00000542865.1;ENST00000541490.1 | 5’UTR;5’UTR;5’UTR;5’UTR;5’UTR | RASSF8;RASSF8;RASSF8;RASSF8;RASSF8 | ENST00000381352.3;ENST00000538081.1;ENST00000535907.1;ENST00000542865.1;ENST00000541490.1 | 5’UTR;5’UTR;5’UTR;5’UTR;5’UTR | chr12:26150499-26150981 | 6 | chr12:26150353-26151156 | 6 | 6.47e-05 | 0.1816602 | 6.47e-05 | 0.1816602 | -0.0460439 | 0.0346636 | 0.0000717 | FALSE | 3.5506316 | |||||||||||||||||
| cg27020362 | chr5 | 138723394 |
|
80695196 | AAATAACAACACAAAACAAAAACTTCCTACCCTCCTAACTACCTACAAAC | II | NA | NA | NA | NA | NA | NA | OpenSea | GGAGGGAGGCAGGATGGCAGCACAGAGCAAGGGCTTCCTGCCCTCCTGGCTGCCTGCAGA[CG]GGAGTGGAGACCGTCAGAGCAAGCCCCAGCTTCTTTCAGAGGAGGGTAGAGTCCAGGACT | GATGGCAGCACAGAGCAAGGGCTTCCTGCCCTCCTGGCTGCCTGCAGACG | MGC29506 | NM_016459 | 3’UTR | RP11-1280I22.1;RP11-1280I22.1 | ENST00000302125.8;ENST00000412103.2 | 3’UTR;3’UTR | RP11-1280I22.1;RP11-1280I22.1;RP11-1280I22.1;RP11-1280I22.1;RP11-1280I22.1;RP11-1280I22.1;RP11-1280I22.1 | ENST00000503481.1;ENST00000417694.2;ENST00000302125.8;ENST00000513389.1;ENST00000412103.2;ENST00000503120.1;ENST00000511979.1 | 3’UTR;3’UTR;3’UTR;3’UTR;3’UTR;3’UTR;3’UTR | chr5:138723220-138723535 | 3 | TRUE | 6.47e-05 | 0.1816602 | 6.47e-05 | 0.1816602 | 0.0407036 | 0.0270968 | 0.0000561 | FALSE | 0.3129787 | ||||||||||||||||||
| cg14190522 | chr9 | 124344221 |
|
33680931 | CCAACTCCCCATCCTTCAACTAACCCCRAACTCATTAAATACTAAAAAAC | II | NA | NA | NA | NA | NA | NA | OpenSea | GCCCCTCAATGCCAACTCCCCATCCTTCAGCTGACCCCGGGCTCATTAAGTGCTAGGAAA[CG]CCACCAGCAGCGGGTGCAGGGCTGAGGGCCAAGCTGCCGGCTGGAACAAAAGAGCTTGTG | CAACTCCCCATCCTTCAGCTGACCCCGGGCTCATTAAGTGCTAGGAAACG | DAB2IP | NM_032552 | Body | TRUE | DAB2IP | ENST00000436835.1 | 5’UTR | chr9:124343985-124344375 | 3 | TRUE | 6.48e-05 | 0.1816602 | 6.48e-05 | 0.1816602 | 0.0585063 | 0.0559994 | 0.0001159 | FALSE | 1.4456870 | ||||||||||||||||||||
| cg09267719 | chr9 | 128994316 |
|
30773945 | TTACTCTATACTAAATACTACTCTAAACATTTCATACRCATTTCCTTATC | II | NA | NA | NA | NA | NA | NA | chr9:128998130-128998426 | N_Shelf | TTATTGAGTGCTTACTCTGTGCTGGGTACTGCTCTAAGCATTTCATACGCATTTCCTTAT[CG]TAACAGACTGCCTTGTATCCCCGCAAGATGCATATGTTGATGTCCTAACCCCCAGTGTCT | TACTCTGTGCTGGGTACTGCTCTAAGCATTTCATACGCATTTCCTTATCG | chr9:128993902-128994459 | 3 | 6.50e-05 | 0.1816602 | 6.50e-05 | 0.1816602 | -0.0553827 | 0.0502065 | 0.0001039 | FALSE | 3.4829673 | |||||||||||||||||||||||||||
| cg05995311 | chr19 | 19682405 |
|
8716184 | TATAAAATCTACAAATCAACTACAAAACAATCAAAAAACCCCCAAAATTC | II | NA | NA | NA | NA | NA | NA | OpenSea | GTATACACAGCTGTGGGGTCTGCAGGTCAGCTACAGGGCAGTCAGAGAACCCCCAGGATT[CG]TGTCCTGGGACACGGGTGTCAGAGAAGGGAAGACTCCAGGGTCATTCCCAGATTCTGCCA | GTGGGGTCTGCAGGTCAGCTACAGGGCAGTCAGAGAACCCCCAGGATTCG | PBX4;PBX4 | NR_038198;NM_025245 | Body;Body | PBX4 | ENST00000559264.1 | 3’UTR | PBX4;PBX4 | ENST00000559735.1;ENST00000559264.1 | 3’UTR;3’UTR | chr19:19682185-19682475 | 3 | 6.51e-05 | 0.1816602 | 6.51e-05 | 0.1816602 | -0.0354003 | 0.0205188 | 0.0000425 | FALSE | 2.3834624 | |||||||||||||||||||
| cg19443707 | chr8 | 31354807 |
|
32688827 | ATTTATCTTTTACCACTAAACTCCCTATTAAAATCTACCAATCAAAAAAC | II | rs2247267 | 0.158794 | NA | NA | NA | NA | OpenSea | CTACAAATCACATTTATCTTTTGCCACTAAGCTCCCTGTTAGGATCTGCCAATCAGAGGA[CG]CTAGGGGCGGACTGGAAGGCTGAGTGGGGAAGAAGGAAGACACTTCCTGTTTGCTTCCTG | TTTATCTTTTGCCACTAAGCTCCCTGTTAGGATCTGCCAATCAGAGGACG | RP11-566H8.1 | ENST00000520391.1 | TSS200 | RP11-566H8.1 | ENST00000520391.1 | TSS200 | chr8:31354685-31355115 | 3 | 6.53e-05 | 0.1816602 | 6.53e-05 | 0.1816602 | 0.0629368 | 0.0648817 | 0.0001343 | FALSE | -0.6625021 | ||||||||||||||||||||||
| cg27253580 | chr4 | 175205025 |
|
28623186 | AACCATTAAAAAAACTCTCAACRAAATCRCTCTTCACAAAAATCTTAAAC | II | NA | NA | NA | NA | NA | NA | chr4:175204565-175205395 | Island | AGAAGTGGACTGGCCATTGAGGAGGCTCTCAGCGGAGTCGCTCTTCACAGGAGTCTTGAA[CG]CGGTGTGGAATCGGCAGCGAGGAATCCTGGAGCACAGAGAAGCTCCCAGCTTTGAAGGTC | GCCATTGAGGAGGCTCTCAGCGGAGTCGCTCTTCACAGGAGTCTTGAACG | FBXO8;KIAA1712;KIAA1712;KIAA1712;FBXO8 | NM_012180;NM_001040157;NM_001040157;NM_001145314;NM_012180 | 1stExon;1stExon;5’UTR;TSS200;5’UTR | 4:175441572-175441970 | 4:175204088-175205502 | Promoter_Associated | FBXO8;CEP44;CEP44;FBXO8;FBXO8;FBXO8;CEP44 | ENST00000393674.2;ENST00000503780.1;ENST00000457424.2;ENST00000296517.4;ENST00000503293.1;ENST00000393674.2;ENST00000503780.1 | 1stExon;1stExon;TSS200;TSS1500;TSS1500;5’UTR;5’UTR | FBXO8;CEP44;CEP44;CEP44;CEP44;CEP44;CEP44;CEP44;FBXO8;FBXO8;FBXO8;FBXO8;FBXO8;CEP44;CEP44 | ENST00000393674.2;ENST00000503780.1;ENST00000457424.2;ENST00000396791.3;ENST00000514712.1;ENST00000505124.1;ENST00000515299.1;ENST00000503053.1;ENST00000515664.1;ENST00000296517.4;ENST00000513696.1;ENST00000503293.1;ENST00000393674.2;ENST00000503780.1;ENST00000505124.1 | 1stExon;1stExon;TSS200;TSS200;TSS200;1stExon;TSS200;TSS200;TSS1500;TSS1500;TSS1500;TSS1500;5’UTR;5’UTR;5’UTR | chr4:175204705-175205635 | 3 | TRUE | 6.54e-05 | 0.1816602 | 6.54e-05 | 0.1816602 | 0.0407497 | 0.0272103 | 0.0000563 | FALSE | -5.1899204 | ||||||||||||||
| cg12261762 | chr18 | 8730751 |
|
5769542 | CTTCAATCTCTCAAAAAATCTACAAAATAATATTCACACAACATCRCTAC | II | NA | NA | rs4239334 | 0.477755 | rs4239334 | 0.477755 | OpenSea | TGCAGGCTCCGGGGGACCTTTTAGGGCAGATTATGGCACCCTTGGGATGGCTACCTTGGA[CG]CAGCGATGCTGTGTGAACATTACTTTGCAGACTTCCTGAGAGATTGAAGATCCATCTATT | CGCAGCGATGCTGTGTGAACATTACTTTGCAGACTTCCTGAGAGATTGAA | MTCL1 | NM_015210 | Body | SOGA2 | ENST00000306285.7 | 5’UTR | SOGA2;SOGA2 | ENST00000522146.1;ENST00000306285.7 | 5’UTR;5’UTR | chr18:8730047-8730947 | 6 | chr18:8729925-8731091 | 6 | 6.62e-05 | 0.1816602 | 6.62e-05 | 0.1816602 | 0.1331661 | 0.2912797 | 0.0006028 | FALSE | -2.0663320 | |||||||||||||||||
| cg05141815 | chr1 | 247837536 |
|
98752928 | TACTTTCACTAAATTCATCTAATCATAATAATTCCAAAAACCATAAATTC | II | NA | NA | NA | NA | NA | NA | OpenSea | GCTGTCCGTTTTCTTTTATGCTTATTTATTTTGGTACATTTGTATGCACAGACAGTTACA[CG]AATTCATGGCTTTTGGAACTATTATGATTAGATGAATCTAGTGAAAGTATTCAAAATAGT | ACTTTCACTAGATTCATCTAATCATAATAGTTCCAAAAGCCATGAATTCG | OR13G1 | NM_001005487 | TSS1500 | OR13G1;RP11-634B7.4 | ENST00000359688.2;ENST00000449298.1 | TSS1500;5’UTR | OR13G1;RP11-634B7.4 | ENST00000359688.2;ENST00000449298.1 | TSS1500;5’UTR | 6.64e-05 | 0.1816602 | 6.64e-05 | 0.1816602 | -0.0402186 | 0.0265870 | 0.0000550 | FALSE | 2.9333545 | |||||||||||||||||||||
| cg24674357 | chr4 | 150919038 |
|
21660958 | ATCCAAATAAAATAATTCAAAATAACTATATTACACATTCACTTACTCAC | II | NA | NA | rs76678691 | 0.086939 | rs76678691 | 0.086939 | OpenSea | TTGAAGGGTTCATCCAGATAAAATGATTCAAAGTGGCTATATTACACATTCACTTGCTCA[CG]TGTTCACTGTCTACGCCCACACTCCACACAGGAGACAGCACAGTGGCAGTGTCTCCAGGA | CGTGAGCAAGTGAATGTGTAATATAGCCACTTTGAATCATTTTATCTGGA | chr4:150918898-150919527 | 6 | chr4:150918808-150919717 | 6 | 6.71e-05 | 0.1816602 | 6.71e-05 | 0.1816602 | 0.1507548 | 0.3742375 | 0.0007745 | FALSE | 0.3745166 | ||||||||||||||||||||||||||
| cg17272549 | chr2 | 54984950 |
|
81730874 | ATAAATAATAACTAATTTTAAAACCCTAAAAAATCTAAACCTACCAAAAC | II | NA | NA | NA | NA | NA | NA | OpenSea | CAGGTTTCCGGCTGTGAGCTGGCTGCTTCTTTCTGACTTCCCCCTTCTTCCTCCCACCCT[CG]CCCTGGTAGGCTTAGATTTCTTAGGGTTCTAAAATCAGTCACCACTTACTCATTTGCTTT | CGCCCTGGTAGGCTTAGATTTCTTAGGGTTCTAAAATCAGTCACCACTTA | EML6 | NM_001039753 | Body | TRUE | EML6 | ENST00000491655.1 | 5’UTR | chr2:54984580-54985110 | 3 | TRUE | 6.71e-05 | 0.1816602 | 6.71e-05 | 0.1816602 | 0.0419087 | 0.0289269 | 0.0000599 | FALSE | 1.3020685 | ||||||||||||||||||||
| cg25366315 | chr5 | 180408809 |
|
89634937 | 20603910 | TCCTCAAAAAACCCAAAAAACTCAACTAAAAAAAATCTTAAAAACACCCA | TCCTCGAAAAACCCAAAAAACTCGACTAAAAAAAATCTTAAAAACGCCCG | I | A | Red | rs78266828 | 0.045417 | NA | NA | NA | NA | OpenSea | CTGGTTCTGGGCCTTCCCAGACAAAAGCCAGAGACCCGGAGCCTCTTTCTGAGAAGGAAC[CG]GGCGTCCCCAAGATTTCCTCTAGCCGAGTCCCCTGGGTCCCCCGAGGACCGGGACAGCTC | CGGGCGTCCCCAAGATTTCCTCTAGCCGAGTCCCCTGGGTCCCCCGAGGA | 5:180341162-180341858 | chr5:180408385-180408915 | 3 | TRUE | 6.73e-05 | 0.1816602 | 6.73e-05 | 0.1816602 | 0.2060022 | 0.6992249 | 0.0014471 | FALSE | 0.9790039 | ||||||||||||||||||||||
| cg20803482 | chr22 | 47145236 |
|
35734978 | AAAACATCCRATAAACATCTTCCTATAAATCTAAATTAACACTATAACTC | II | rs710123 | 0.481198 | NA | NA | NA | NA | OpenSea | AAAGTTCCATGCTTTAATCTTCCTCTTCCAGTAAAGAAACAGCCTGAAGTGGCCTGTCTG[CG]AGTCACAGTGTTAACTCAGATCCACAGGAAGATGTTCACCGGATGCTCCTTGGCCAGGCT | GAGCATCCGGTGAACATCTTCCTGTGGATCTGAGTTAACACTGTGACTCG | 22:47145039-47145636 | Unclassified_Cell_type_specific | chr22:47145180-47145695 | 3 | 6.75e-05 | 0.1816602 | 6.75e-05 | 0.1816602 | 0.0530908 | 0.0464693 | 0.0000962 | FALSE | -4.4468507 | ||||||||||||||||||||||||||
| cg15078975 | chr11 | 85958536 |
|
15645551 | AATTATAACTCTACCACCAATAAAAATCAAATATTTTTATATTACACTTC | II | rs79326775 | 0.031107 | NA | NA | NA | NA | chr11:85955385-85955590 | S_Shelf | ACATTAAGTAACAAGATCTAGCAGCGGGTCTGATAGTAGTGATGGGTATAAACACTTTTT[CG]AAGTGTAATATAAAAATACTTGATTTCCATTGGTGGCAGAGTCACAACTTCAGTAACATT | CGAAGTGTAATATAAAAATACTTGATTTCCATTGGTGGCAGAGTCACAAC | EED;EED | NM_152991;NM_003797 | Body;Body | EED | ENST00000525244.1 | 5’UTR | TRUE | 6.76e-05 | 0.1816602 | 6.76e-05 | 0.1816602 | -0.0442580 | 0.0323016 | 0.0000668 | FALSE | 2.5739261 | ||||||||||||||||||||||
| cg12414339 | chr3 | 119536718 |
|
95761416 | ATCTATATCTAAATCAATACTATATACCCCACAACAAACTACCTATTATC | II | NA | NA | rs1054190 | 0.074623 | rs1054190 | 0.074623 | OpenSea | ACCTCATTCCGGCCACATCATTCTGTGTCTCTGCATCCATTTGAACACATTATTAAGCAC[CG]ATAATAGGTAGCCTGCTGTGGGGTATACAGCATTGACTCAGATATAGATCCTGAGCTCAC | TCTATATCTGAGTCAATGCTGTATACCCCACAGCAGGCTACCTATTATCG | NR1I2;NR1I2;NR1I2 | NM_003889;NM_022002;NM_033013 | 3’UTR;3’UTR;3’UTR | NR1I2 | ENST00000393716.2 | 3’UTR | NR1I2;NR1I2 | ENST00000493757.1;ENST00000466380.1 | 5’UTR;3’UTR | TRUE | 6.78e-05 | 0.1816602 | 6.78e-05 | 0.1816602 | 0.2726592 | 1.2267455 | 0.0025388 | FALSE | 2.1958439 | ||||||||||||||||||||
| cg07441190 | chr22 | 27506823 |
|
1707941 | ATTTAAACTCTACAATACTCTTTCATTACTAAAACCACCACATTAACATC | II | NA | NA | NA | NA | NA | NA | OpenSea | TATTAATTCAGATCACTGCATTTATCCCCATCTGTCCTAGATTCGTCACCAAGACACTGA[CG]ATGCTAATGTGGTGGTTTCAGCAATGAAAGAGCACTGCAGAGTTCAAATTGTTGTTCAGA | TTTGAACTCTGCAGTGCTCTTTCATTGCTGAAACCACCACATTAGCATCG | chr22:27506705-27506895 | 3 | 6.78e-05 | 0.1816602 | 6.78e-05 | 0.1816602 | 0.0370656 | 0.0226715 | 0.0000469 | FALSE | 2.9903851 | ||||||||||||||||||||||||||||
| cg02942766 | chr2 | 42328937 |
|
94741447 | CTCAATTTCTCCATCTATAAAATAAAAACRTTAACAAAAATACCTATCTC | II | NA | NA | NA | NA | NA | NA | chr2:42329439-42329653 | N_Shore | TTTGCCTAAGCCTCAGTTTCTCCATCTGTGAAATGGGGACGTTGGCAGGAGTGCCTGTCT[CG]TTGTGCTGCCCGAGGGGTGAATGAGAAAAGGAAAGCGTTGGACTACTGTCAACGCGATTT | CGAGACAGGCACTCCTGCCAACGTCCCCATTTCACAGATGGAGAAACTGA | TRUE | 2:42181671-42182720 | chr2:42328200-42328955 | 3 | TRUE | 6.80e-05 | 0.1816602 | 6.80e-05 | 0.1816602 | 0.0412893 | 0.0281482 | 0.0000583 | FALSE | -3.3553434 | ||||||||||||||||||||||||
| cg17221856 | chr5 | 180396891 |
|
61747257 | AAAAAACTCCTCAAAATAACCAAAATAAAAACCCAAAAAACACTAAAAAC | II | NA | NA | NA | NA | NA | NA | chr5:180397288-180397563 | N_Shore | AGCGGCGGGTTGAAGGGCTCCTCAAGGTGGCCAGAATGGAAGCCCAGGAAGCACTGAGAG[CG]AGCACGGGTCACCAGCACGTTGTCACCTCTCAGTCTCATACTAAATTTGTTTTCACTGAG | CGCTCTCAGTGCTTCCTGGGCTTCCATTCTGGCCACCTTGAGGAGCCCTT | 5:180329120-180329504 | TRUE | 6.82e-05 | 0.1816602 | 6.82e-05 | 0.1816602 | 0.1559469 | 0.4017065 | 0.0008313 | FALSE | 1.9190334 | |||||||||||||||||||||||||||
| cg21711343 | chr12 | 8124127 |
|
86706593 | CCTTCCCTTTTACATTAAATTACTCTAATTTCCCRATTATTTCTATTTCC | II | NA | NA | NA | NA | NA | NA | chr12:8123346-8123561 | S_Shore | TTCACTTTTTCATATGTTGGTGAAATATTTACGTAAGTACCACGTATGAACCAAACACTA[CG]GAAACAGAAACAACCGGGAAACTAGAGCAACTCAATGTAAAAGGGAAGGCGCATACAATA | CGGAAACAGAAACAACCGGGAAACTAGAGCAACTCAATGTAAAAGGGAAG | chr12:8123968-8123968 | 12:8122690-8124281 | Promoter_Associated | NECAP1 | ENST00000545179.1 | 5’UTR | NECAP1 | ENST00000545179.1 | 5’UTR | chr12:8123960-8124210 | 3 | 6.87e-05 | 0.1816602 | 6.87e-05 | 0.1816602 | 0.0649266 | 0.0697391 | 0.0001443 | FALSE | -2.6427454 | ||||||||||||||||||
| cg18454299 | chr15 | 44959064 |
|
15666287 | ACTTACCCTAAAATTATATTACTAATAAATAATACAACCAAAATTCAAAC | II | NA | NA | NA | NA | NA | NA | chr15:44955291-44955983 | S_Shelf | GAAGTGAAAGAACTTGCCCTAAAGTTATATTGCTAGTAAGTGATACAGCCAGAATTCAAA[CG]TAGGTCTTTTTAAAATCTAAAGCTTGTCCCCTTAGGTACTATGTTATACTGCCTCCTAGA | CTTGCCCTAAAGTTATATTGCTAGTAAGTGATACAGCCAGAATTCAAACG | PATL2 | NM_001145112 | Body | 15:44958485-44959361 | Unclassified | PATL2;PATL2;PATL2 | ENST00000558159.1;ENST00000561082.1;ENST00000558159.1 | 3’UTR;3’UTR;1stExon | chr15:44958740-44959235 | 3 | TRUE | 6.89e-05 | 0.1816602 | 6.89e-05 | 0.1816602 | 0.0482749 | 0.0385732 | 0.0000798 | FALSE | -3.5520548 | ||||||||||||||||||
| cg07903626 | chr16 | 66098650 |
|
13800940 | TTAAATCATCTAAATTAACTACAAAACAACAACACAATAAAAAATTAATC | II | NA | NA | rs11640559 | 0.287181 | rs11640559 | 0.287181 | OpenSea | AAACATTGTCTTTGGATCATCTAAGTTGGCTACAGAACAACAGCACAGTGGGAGGTTAAT[CG]AGATTCAGCAACCTGCGGCTAATTGTAATTTCTTTTGGTTTCCTCTCTAAATCATTTTCT | TGGATCATCTAAGTTGGCTACAGAACAACAGCACAGTGGGAGGTTAATCG | TRUE | TRUE | 6.91e-05 | 0.1816602 | 6.91e-05 | 0.1816602 | -0.1243038 | 0.2558755 | 0.0005295 | FALSE | 0.8416650 | ||||||||||||||||||||||||||||
| cg20290167 | chr17 | 81040724 |
|
38772114 | AACRTAAAAATTTTCACATTAAAATCAATAACACATAATACRCAAAACCC | II | NA | NA | NA | NA | NA | NA | chr17:81042626-81043244 | N_Shore | GTGCCGAGGTCTGCTGGGTCCCAGGCTGAAGGATGCATCGTTTAACTTTTTTTGTCTACA[CG]GGTCTTGCGCATCATGTGCTACTGATTTTAATGTGAAAATCCCTACGTCAGCGGGTCTGG | CGGGTCTTGCGCATCATGTGCTACTGATTTTAATGTGAAAATCCCTACGT | METRNL | NM_001004431 | Body | 17:78633945-78634014 | METRNL;METRNL | ENST00000570778.1;ENST00000571814.1 | 5’UTR;TSS1500 | METRNL;METRNL | ENST00000570778.1;ENST00000571814.1 | 5’UTR;TSS1500 | chr17:81040640-81040815 | 3 | TRUE | 6.91e-05 | 0.1816602 | 6.91e-05 | 0.1816602 | -0.0416273 | 0.0286966 | 0.0000594 | FALSE | 1.8985558 | ||||||||||||||||
| cg00553601 | chr1 | 224268136 |
|
4776380 | AAAAATCAATAACATATTTCTACTCAATAACATAACTTAACCACRACTCC | II | NA | NA | rs6684337 | 0.359435 | rs6684337 | 0.359435 | OpenSea | TGAAGATAATAGGGAGTCAGTGACATATTTCTACTCAGTGACATGACTTGGCCACGACTC[CG]CTGTAAGCAGAATTTTCTTCCACAAATGCCTCTGGAAGCCAGAGCTTCCAGAAATCACAG | CGGAGTCGTGGCCAAGTCATGTCACTGAGTAGAAATATGTCACTGACTCC | chr1:224267866-224268360 | 4 | chr1:224267299-224268650 | 6 | 6.92e-05 | 0.1816602 | 6.92e-05 | 0.1816602 | 0.2247561 | 0.8368977 | 0.0017320 | FALSE | 1.6095634 | ||||||||||||||||||||||||||
| cg03600259 | chr6 | 164052180 |
|
3792335 | CACCTCCAAAACCCCACRAAATAATAATAACTTACTACCTACAAAATAAC | II | NA | NA | NA | NA | NA | NA | chr6:164051485-164052323 | Island | CGCCCCGGGGCTCTGGTCCCTTCCCTGGGGGCGGCCGCTGCGCTAGCGGCCGAGGCTTCC[CG]TTATCCTGCAGGCAGCAAGTCATCACCACCTCGTGGGGCCCTGGAGGTGCATTTTCCTCA | ACCTCCAGGGCCCCACGAGGTGGTGATGACTTGCTGCCTGCAGGATAACG | 6:163971454-163972341 | chr6:164051905-164052190 | 3 | TRUE | 6.93e-05 | 0.1816602 | 6.93e-05 | 0.1816602 | -0.0574602 | 0.0547192 | 0.0001132 | FALSE | -1.4189095 | |||||||||||||||||||||||||
| cg14001594 | chr12 | 6445328 |
|
16644134 | ACTAACCAAAAATCCCTAAAAAACTCCCTTTAAAACTATCTAAAACTAAC | II | NA | NA | rs2284344 | 0.460838 | NA | NA | OpenSea | CTGGTACTTTGAATCCCATCCAGGGGGCTTGAGGCAGAGTCATGATGAAGAACTGGGGGA[CG]CCAGCCCCAGACAGCCTTAAAGGGAGCTTTTCAGGGACCTCTGGCCAGTGGGGGATGAGC | CGCCAGCCCCAGACAGCCTTAAAGGGAGCTTTTCAGGGACCTCTGGCCAG | TNFRSF1A | NM_001065 | Body | chr12:6445143-6445143 | TRUE | 12:6444520-6445471 | Promoter_Associated | TNFRSF1A;TNFRSF1A | ENST00000535958.1;ENST00000538363.1 | 3’UTR;3’UTR | chr12:6443980-6446910 | 3 | 6.96e-05 | 0.1816602 | 6.96e-05 | 0.1816602 | -0.0954972 | 0.1512530 | 0.0003130 | FALSE | -2.6463343 | ||||||||||||||||||
| cg16178225 | chr1 | 245605309 |
|
14697822 | ACATCTAACCCTTTAATAACTTTTAAATAACTTCTAATCTACAAAACATC | II | NA | NA | NA | NA | NA | NA | OpenSea | CTACTGCAGAGGCATCTGGCCCTTTGATGGCTTTTGGGTAACTTCTGATCTACAGGGCAT[CG]TATCAAAATGCAGACTGAGATTTAGTGGGTAGCCAGTGAGCACTTGCTAGGTGCCAGGCA | CGATGCCCTGTAGATCAGAAGTTACCCAAAAGCCATCAAAGGGCCAGATG | KIF26B | NM_018012 | Body | chr1:245605060-245605315 | 3 | 6.98e-05 | 0.1816602 | 6.98e-05 | 0.1816602 | -0.1788872 | 0.5310190 | 0.0010990 | FALSE | -3.8462129 | |||||||||||||||||||||||||
| cg14112372 | chr1 | 172314302 |
|
74623215 | AAAACTCTCAACTAACTATTAAAATTTCAAACTAATACCTCTAAACTTTC | II | NA | NA | NA | NA | NA | NA | OpenSea | AATATAGCTTGGAAAAGAAAACATAATTATAATCATAGAGGGAATAAGAATTGTCTTTCT[CG]AAAGTTCAGAGGCATTAGCCTGAAACCCTAACAGTTAGTTGAGAGTTTCTGTTTCTCATT | AAACTCTCAACTAACTGTTAGGGTTTCAGGCTAATGCCTCTGAACTTTCG | DNM3;DNM3 | NM_001136127;NM_015569 | Body;Body | TRUE | chr1:172314280-172314510 | 3 | 7.09e-05 | 0.1816602 | 7.09e-05 | 0.1816602 | -0.0399216 | 0.0265274 | 0.0000549 | FALSE | 2.2765066 | ||||||||||||||||||||||||
| cg06684911 | chr19 | 1792217 |
|
10671560 | TACTATTAACTAAAAAAACAACAAACTTTTAATTAAAAAACCCAAACTCC | II | NA | NA | rs7258947 | 0.305581 | NA | NA | chr19:1795922-1797001 | N_Shelf | CTGTCACCATGCTGAAGCCGACATCCGAGGCTCAGCCCTCCCCAACCCCCTGCCGGGCTC[CG]GAGCCTGGGTCCCCCAACCAAAAGCCTGTTGCCTCCCCAGCCAACAGCAGCCAGAAGGGA | GCTGTTGGCTGGGGAGGCAACAGGCTTTTGGTTGGGGGACCCAGGCTCCG | ATP8B3 | NM_138813 | Body | ATP8B3 | ENST00000532824.1 | 3’UTR | ATP8B3;ATP8B3;ATP8B3 | ENST00000526847.1;ENST00000532824.1;ENST00000531925.1 | TSS1500;3’UTR;3’UTR | chr19:1791770-1792257 | 6 | TRUE | 7.09e-05 | 0.1816602 | 7.09e-05 | 0.1816602 | -0.1280842 | 0.2730983 | 0.0005652 | FALSE | 2.2006026 | |||||||||||||||||
| cg16287880 | chr14 | 81889483 |
|
12800146 | CTATCTTCATCTTCCTACAACATAACCTTCTATAAATATACCTAAAATAC | II | NA | NA | NA | NA | NA | NA | OpenSea | AAAAAGTGAAACTATCTTCATCTTCCTGCAACATGACCTTCTATAGGTATACCTAAGGTG[CG]CTGCACACTTTTCTTGATGTTATCACTACGTACACAAGTCACCAACCAGGAAGAGTTCTC | TATCTTCATCTTCCTGCAACATGACCTTCTATAGGTATACCTAAGGTGCG | STON2;STON2 | NM_033104;NM_001256430 | 5’UTR;5’UTR | STON2 | ENST00000555447.1 | 5’UTR | STON2;STON2;STON2 | ENST00000555447.1;ENST00000554710.1;ENST00000557055.1 | 5’UTR;5’UTR;5’UTR | chr14:81889420-81889630 | 3 | 7.11e-05 | 0.1816602 | 7.11e-05 | 0.1816602 | -0.0397497 | 0.0263134 | 0.0000545 | FALSE | 2.7838574 | |||||||||||||||||||
| cg10350186 | chr17 | 7967244 |
|
41677182 | 31699932 | AACCCAAATCCTCAAAAAACATCACCTAAAAATCTTCCTTTCAAAAAACA | AACCCGAATCCTCAAAAAACGTCACCTAAAAATCTTCCTTTCGAAAAACG | I | A | Red | rs73972664 | 0.053473 | NA | NA | NA | NA | OpenSea | CTGGGGAACAAAAGGTAATAAGCCACTCTTTACTATGCCTTCTCCCTCTGCCCACTCCCC[CG]CCCCCCGAAAGGAAGACCTCCAGGTGACGCTCCCTGAGGACTCGGGCCAGGTGCTGCTGC | CGCCCCCCGAAAGGAAGACCTCCAGGTGACGCTCCCTGAGGACTCGGGCC | TRUE | 17:7907872-7908097 | chr17:7967100-7967395 | 3 | TRUE | 7.19e-05 | 0.1816602 | 7.19e-05 | 0.1816602 | 0.0529463 | 0.0467940 | 0.0000968 | FALSE | -3.7602179 | |||||||||||||||||||||
| cg08492568 | chr6 | 89759594 |
|
80749370 | AACAACACRCAAAAACTTATATACTACCCACAACAATCACCAACTTAAAC | II | rs74356922 | 0.116194 | NA | NA | NA | NA | OpenSea | GGTGCTTGCAGAACAGCACGCAGAAGCTTATGTACTGCCCACAACAATCACCAACTTGGA[CG]TGGTAGTTGAAGCAATGAGTCTTATGAGGTCCCTCAAGATGAGCGGGAAGAACAAAGTGG | CGTCCAAGTTGGTGATTGTTGTGGGCAGTACATAAGCTTCTGCGTGCTGT | TRUE | chr6:89757880-89761855 | 6 | TRUE | 7.20e-05 | 0.1816602 | 7.20e-05 | 0.1816602 | -0.0434429 | 0.0315106 | 0.0000652 | TRUE | 1.3185326 | ||||||||||||||||||||||||||
| cg02000275 | chr14 | 34488059 |
|
28624976 | AAACCACTACAAATTATAAAAATACTTCTCAAATACAATTAAATTCTACC | II | NA | NA | NA | NA | NA | NA | OpenSea | CAAGAGAGGCTTCAGCGATTTCGAGAACAGTGATGCAATGTGGAGAGACGCGGCAGGCAG[CG]GCAGAATCTAATTGCATTTGAGAAGCATCTCCACAATTTGTAGTGGCCTTCTCACAGGGA | CGGCAGAATCTAATTGCATTTGAGAAGCATCTCCACAATTTGTAGTGGCC | TRUE | 14:34487901-34488326 | Unclassified_Cell_type_specific | EGLN3;EGLN3 | ENST00000550114.1;ENST00000551935.1 | TSS200;3’UTR | chr14:34487685-34488135 | 3 | TRUE | 7.25e-05 | 0.1816602 | 7.25e-05 | 0.1816602 | -0.0474956 | 0.0377120 | 0.0000780 | FALSE | 0.9151850 | |||||||||||||||||||||
| cg17509603 | chr7 | 151107687 |
|
14688572 | 91635223 | AACCACTACAAAATCAATAAAACCAAAATATCAAATTCACCTTCCAACCA | AACCGCTACGAAATCGATAAAACCGAAATATCAAATTCACCTTCCAACCG | I | C | Grn | NA | NA | NA | NA | NA | NA | chr7:151106244-151107808 | Island | GGATGAGGTGCGAGCCGCTGCGGGGTCGGTGGAGCCGGGATGTCAAGTTCACCTTCCAGC[CG]CCGCGGGCTCCCTCGGCCTGGGGCGCCTCTAATGGACCCCGGGGTCGGCCTGAGCCCTCC | AGCCGCTGCGGGGTCGGTGGAGCCGGGATGTCAAGTTCACCTTCCAGCCG | WDR86;WDR86;WDR86;WDR86;WDR86;WDR86;WDR86-AS1;WDR86-AS1;WDR86-AS1 | NM_198285;NM_001284260;NM_001284262;NM_001284261;NM_001284262;NM_001284261;NR_034013;NR_034012;NR_109857 | TSS1500;TSS1500;1stExon;1stExon;5’UTR;5’UTR;Body;Body;Body | DMR | 7:150737178-150739039 | WDR86;WDR86;WDR86;RP4-555L14.5;RP4-555L14.5 | ENST00000334493.6;ENST00000477459.1;ENST00000477459.1;ENST00000489632.1;ENST00000480632.1 | TSS1500;1stExon;5’UTR;5’UTR;5’UTR | WDR86;RP4-555L14.5;WDR86;WDR86;WDR86;WDR86;WDR86;RP4-555L14.5;RP4-555L14.5;WDR86;WDR86;RP4-555L14.5;RP4-555L14.5 | ENST00000496971.1;ENST00000466677.1;ENST00000469830.1;ENST00000445513.1;ENST00000484630.1;ENST00000334493.6;ENST00000496971.1;ENST00000460148.1;ENST00000460148.1;ENST00000477459.1;ENST00000477459.1;ENST00000489632.1;ENST00000480632.1 | 3’UTR;5’UTR;TSS1500;TSS1500;TSS1500;TSS1500;1stExon;1stExon;5’UTR;1stExon;5’UTR;5’UTR;5’UTR | chr7:151106945-151107955 | 3 | 7.26e-05 | 0.1816602 | 7.26e-05 | 0.1816602 | 0.0513758 | 0.0441417 | 0.0000914 | FALSE | -4.4506016 | ||||||||||||
| cg00702692 | chr12 | 114383892 |
|
12635574 | AATCCCTAACACAAATAAAACACTATTAAAAATAATTCCTATCATCATCC | II | NA | NA | rs73401038 | 0.166895 | rs73401038 | 0.166895 | OpenSea | TCTACATGCCCCCAATTTCCCTATCATGGGCTACGTATACAGGGCCTGAAGACAACAAGA[CG]GATGATGACAGGAACCATCCCTAACAGTGCTTCATCTGTGTCAGGGACTAAGAACTTCAC | CGGATGATGACAGGAACCATCCCTAACAGTGCTTCATCTGTGTCAGGGAC | RBM19;RBM19;RBM19 | NM_016196;NM_001146698;NM_001146699 | Body;Body;Body | chr12:114382855-114390321 | 3 | 7.28e-05 | 0.1816602 | 7.28e-05 | 0.1816602 | 0.1352634 | 0.3061424 | 0.0006336 | FALSE | 3.5737897 | |||||||||||||||||||||||||
| cg00122779 | chr6 | 32033006 |
|
43720290 | TCTTAAATTCAAATCAAAAAATAAACCCAATCTAACCCTAACTTAAAATC | II | NA | NA | rs7766862 | 0.226975 | rs7766862 | 0.226975 | OpenSea | GGCCCCAGCTGTCTTGAATTCAGGTCAGAAGGTGGGCCCAGTCTGGCCCTAACTTAAGAT[CG]ATTTCTGATTATAATCATAATCAGATTTTGTGGCTTCCTTATGGTCCCTCAACCATGCCA | CGATCTTAAGTTAGGGCCAGACTGGGCCCACCTTCTGACCTGAATTCAAG | TNXB | NM_019105 | Body | TRUE | 7.30e-05 | 0.1816602 | 7.30e-05 | 0.1816602 | 0.1804683 | 0.5451425 | 0.0011282 | FALSE | -0.4134854 | ||||||||||||||||||||||||||
| cg06612088 | chr5 | 11589016 |
|
80622472 | TTCTTCACTCCCTTCTCRATTTTTAAACTACTCTATAATTCCTTTTAACC | II | rs2251418 | 0.262287 | NA | NA | NA | NA | OpenSea | AGGCTGTGGAGCAGGCGGTTCCTGGCATCCTACCCACCTCCCTCCTCCCTCCCTGCACCA[CG]GCTAAAAGGAACCACAGAGCAGCTCAAAAACCGAGAAGGGAGTGAAGAACAGCCTCGAAA | CGGCTAAAAGGAACCACAGAGCAGCTCAAAAACCGAGAAGGGAGTGAAGA | CTNND2 | NM_001332 | Body | TRUE | CTNND2;CTNND2;CTNND2;CTNND2 | ENST00000511377.1;ENST00000503622.1;ENST00000511377.1;ENST00000458100.2 | 1stExon;TSS200;5’UTR;5’UTR | CTNND2;CTNND2;CTNND2;CTNND2;CTNND2;CTNND2;CTNND2 | ENST00000511377.1;ENST00000513598.1;ENST00000503622.1;ENST00000511377.1;ENST00000458100.2;ENST00000511278.1;ENST00000509868.1 | 1stExon;TSS200;TSS200;5’UTR;5’UTR;3’UTR;3’UTR | chr5:11588925-11589310 | 3 | TRUE | 7.33e-05 | 0.1816602 | 7.33e-05 | 0.1816602 | 0.0499803 | 0.0418550 | 0.0000866 | FALSE | -2.5191387 | |||||||||||||||||
| cg21314094 | chr8 | 116650526 |
|
77775335 | TAAACACAAAAATTACTAACCTCTATAAAAAAATACCCTAACTTTACAAC | II | NA | NA | NA | NA | NA | NA | OpenSea | TAATCACTCAAGTCTCCCAATGACTTGCCATCCAGACAGAGTTTGTTTTTGAAGTAGGAA[CG]CTGTAAAGTCAGGGTACTTTTCCACAGAGGTTAGTAATCTTTGTGTCCATTCCAAAACAA | CGCTGTAAAGTCAGGGTACTTTTCCACAGAGGTTAGTAATCTTTGTGTCC | TRPS1;TRPS1;TRPS1 | NM_001282902;NM_001282903;NM_014112 | Body;5’UTR;5’UTR | TRPS1;TRPS1;TRPS1 | ENST00000220888.5;ENST00000519674.1;ENST00000395715.3 | 5’UTR;5’UTR;5’UTR | TRPS1;TRPS1;TRPS1;TRPS1;TRPS1;TRPS1;TRPS1 | ENST00000220888.5;ENST00000519674.1;ENST00000395713.2;ENST00000451156.1;ENST00000395715.3;ENST00000519815.1;ENST00000422939.1 | 5’UTR;5’UTR;5’UTR;5’UTR;5’UTR;5’UTR;5’UTR | chr8:116650420-116650690 | 3 | 7.40e-05 | 0.1816602 | 7.40e-05 | 0.1816602 | -0.0356782 | 0.0213641 | 0.0000442 | FALSE | 3.5022862 | |||||||||||||||||||
| cg00119778 | chr6 | 32466447 |
|
44802899 | CTCTTTCTCTCTCTCACACTTTCTATCTCTTTCTCTCTTTCCTTTCTACC | II | NA | NA | NA | NA | NA | NA | OpenSea | TCAAAAGGGAAGGAGAGGGGAGAACCACAGCATAAACAGCTGGCAGAGGCAGGGAAAGAC[CG]GCAGAAAGGAAAGAGAGAAAGAGACAGAAAGTGTGAGAGAGAGAAAGAGGAAGTGACAGA | CGGCAGAAAGGAAAGAGAGAAAGAGACAGAAAGTGTGAGAGAGAGAAAGA | TRUE | 7.46e-05 | 0.1816602 | 7.46e-05 | 0.1816602 | 0.0579897 | 0.0565373 | 0.0001170 | FALSE | -2.3903944 | |||||||||||||||||||||||||||||
| cg17546365 | chr19 | 2540252 |
|
60765256 | CAATAATATAATCCCACCTCACTAAAAACTTAAACTCCTAAACCTAAACC | II | NA | NA | rs56357228 | 0.177758 | rs56357228 | 0.177758 | chr19:2540906-2541138 | N_Shore | AGGCTAGAGTACAGTAGTGTGATCCCACCTCACTGAAAACTTGAACTCCTGGGCCTAAGC[CG]TTCTCCTGCCCCAGCCTCCCAAGTAGCTGGGACCACAGGCACACACCACCATGCCCCCCT | CGGCTTAGGCCCAGGAGTTCAAGTTTTCAGTGAGGTGGGATCACACTACT | GNG7 | NM_052847 | 5’UTR | GNG7 | ENST00000382159.2 | 5’UTR | GNG7 | ENST00000382159.2 | 5’UTR | chr19:2540203-2541490 | 6 | 7.47e-05 | 0.1816602 | 7.47e-05 | 0.1816602 | 0.1045762 | 0.1838884 | 0.0003806 | FALSE | 3.3335467 | ||||||||||||||||||
| cg25134938 | chr3 | 158512958 |
|
26773895 | ATTTTTCCACAACAATAAACTTCCTTTATTACACCACTAAATAATATAAC | II | NA | NA | NA | NA | NA | NA | OpenSea | GACAGGAACAGGTTTTTCCACAGCAGTAAGCTTCCTTTGTTACACCACTAGGTGGTGTAA[CG]TGCTCCTGATTTAAGGGATTCACTTATTAAGCAGTTTTCAAGCTGGCCCTGTTCTAGATG | TTTTTCCACAGCAGTAAGCTTCCTTTGTTACACCACTAGGTGGTGTAACG | 3:158512811-158513037 | NonGene_Associated | MFSD1 | ENST00000465739.1 | 5’UTR | chr3:158512820-158513070 | 3 | 7.50e-05 | 0.1816602 | 7.50e-05 | 0.1816602 | 0.0692587 | 0.0807204 | 0.0001671 | FALSE | 0.0617775 | |||||||||||||||||||||||
| cg23074601 | chr7 | 157985748 |
|
73690222 | 28732976 | ACACACAATAACAATACATAAATCACTATTTAACAACAAAAACTACAACA | ACACGCGATAACGATACGTAAATCACTATTTAACAACAAAAACTACAACG | I | A | Red | NA | NA | NA | NA | NA | NA | OpenSea | CCTTAGGTTGATGTACTTCGCCACAGCCTCGGGACGTCCATGCAGTGCTCTCAGCCCCTC[CG]CTGCAGTCCCTGCTGTTAAACAGTGATTCACGCACCGCCATCGCGTGCACCATGCAGGGC | GCACGCGATGGCGGTGCGTGAATCACTGTTTAACAGCAGGGACTGCAGCG | PTPRN2;PTPRN2;PTPRN2 | NM_002847;NM_130842;NM_130843 | Body;Body;Body | 7:157678478-157678608 | chr7:157985305-157985855 | 3 | TRUE | 7.52e-05 | 0.1816602 | 7.52e-05 | 0.1816602 | 0.0459436 | 0.0355386 | 0.0000735 | FALSE | 5.9600725 | |||||||||||||||||||
| cg02950621 | chr16 | 3635098 |
|
78694974 | 58686837 | AACATCAATAACACACACTAAAAACCACACCTTATATAACACAAATACCA | AACATCGATAACACGCACTAAAAACCACACCTTATATAACACGAATACCG | I | A | Red | NA | NA | rs75693937 | 0.050372 | NA | NA | chr16:3639092-3639306 | N_Shelf | CTTCCCAATGATAGCATCGGTGACACGCACTGAGGACCACACCTTGTATAACACGGGTGC[CG]GGTGAACAGAGCTCCTGGGGCCACTGAACCCAACAGCCCGGCACGTGACTAAAACTTATG | CGGCACCCGTGTTATACAAGGTGTGGTCCTCAGTGCGTGTCACCGATGCT | BTBD12 | NM_032444 | Body | TRUE | 7.55e-05 | 0.1816602 | 7.55e-05 | 0.1816602 | -0.1246701 | 0.2618663 | 0.0005419 | FALSE | 4.7536458 | |||||||||||||||||||||
| cg11139010 | chr10 | 103363015 |
|
12659135 | ATCTCTCTATTAAAAAATAACCTAAAAACCRCTAAACCCTTAACCAAATC | II | NA | NA | NA | NA | NA | NA | OpenSea | GCCCTCCTCAGGTCTCTCTGTTGGGAGGTAACCTAGAGGCCGCTGAACCCTTAGCCAGAT[CG]TTCCCGAACCTAGTGGCATTTTTACCTTCTACCTGGAAGAATGTATTTTATACCTTTACT | TCTCTCTGTTGGGAGGTAACCTAGAGGCCGCTGAACCCTTAGCCAGATCG | DPCD | NM_015448 | Body | DPCD | ENST00000475443.1 | 5’UTR | chr10:103362560-103363075 | 3 | 7.60e-05 | 0.1816602 | 7.60e-05 | 0.1816602 | 0.0488632 | 0.0402813 | 0.0000834 | FALSE | 3.2814184 | ||||||||||||||||||||||
| cg11301312 | chr2 | 137690577 |
|
14725563 | ATCTAATATTAAAACATTCCTCCAATAACAAAAACTAAACTTCCAAAACC | II | rs2565219 | 0.279762 | NA | NA | NA | NA | OpenSea | AGTAGGGTCGACTTGGTGCAGATAAAGCATGGGTGGCTTTCACAGTGGTTAAAAGAAAGG[CG]GTTTTGGAAGTCCAGCTTCTGTTACTGGAGGAATGTCTTAATATCAGACTTGATTCCAGG | TCTGATATTAAGACATTCCTCCAGTAACAGAAGCTGGACTTCCAAAACCG | THSD7B | ENST00000472720.1 | 5’UTR | chr2:137690360-137690590 | 3 | 7.62e-05 | 0.1816602 | 7.62e-05 | 0.1816602 | 0.0756863 | 0.0966963 | 0.0002001 | FALSE | 0.0161003 | |||||||||||||||||||||||||
| cg00189137 | chr8 | 99838648 |
|
7702551 | ATTATAAACAAACTCCTCRCTACATTTCACAATAATTACATCTAATTACC | II | NA | NA | NA | NA | NA | NA | chr8:99837461-99837936 | S_Shore | GTTTGATTTTTATTGTGGACAAGCTCCTCGCTACATTTCACAATAATTACATCTAATTAC[CG]AGAAAATAATTCGTACAGTGAGATCTCTCGGTACACCAAATTCAGTTGCACTGGGCCCTT | CGGTAATTAGATGTAATTATTGTGAAATGTAGCGAGGAGCTTGTCCACAA | STK3;STK3;STK3 | NM_001256313;NM_006281;NM_001256312 | TSS1500;TSS1500;Body | 8:99837383-99838880 | Promoter_Associated | STK3 | ENST00000419617.2 | TSS1500 | STK3;STK3;STK3;STK3 | ENST00000521649.1;ENST00000424861.2;ENST00000518165.1;ENST00000419617.2 | TSS1500;TSS1500;TSS1500;TSS1500 | chr8:99838580-99838935 | 3 | 7.62e-05 | 0.1816602 | 7.62e-05 | 0.1816602 | 0.0462686 | 0.0361387 | 0.0000748 | FALSE | 2.9860845 | ||||||||||||||||
| cg19287491 | chr1 | 145508667 |
|
75730906 | TAAATAACACTTTATTACCTCCTTTCTTTCATAAACCTTAAATAACATTC | II | NA | NA | NA | NA | NA | NA | chr1:145507588-145507931 | S_Shore | TGAAGGTATCCTAAGTGACACTTTATTGCCTCCTTTCTTTCATAAGCCTTAGGTAGCATT[CG]TAGTTCTGTGTTTGCTGTGGTTGGCCAAGAGCAAAGTTGAAATAAAATGACATTGGAAAT | AAGTGACACTTTATTGCCTCCTTTCTTTCATAAGCCTTAGGTAGCATTCG | RBM8A;NBPF20;NBPF10;NBPF10 | NM_005105;NM_001278267;NM_001039703;NM_001302371 | Body;Body;Body;Body | RP11-315I20.1;RP11-315I20.1;RP11-315I20.1;RP11-315I20.1;RP11-315I20.1 | ENST00000421764.1;ENST00000448561.1;ENST00000437797.1;ENST00000412239.1;ENST00000447686.1 | TSS1500;TSS1500;TSS1500;TSS1500;TSS1500 | RBM8A;RP11-315I20.1;RP11-315I20.1;RP11-315I20.1;RP11-315I20.1;RP11-315I20.1 | ENST00000498663.1;ENST00000421764.1;ENST00000448561.1;ENST00000437797.1;ENST00000412239.1;ENST00000447686.1 | 5’UTR;TSS1500;TSS1500;TSS1500;TSS1500;TSS1500 | chr1:145505168-145509196 | 6 | 7.64e-05 | 0.1816602 | 7.64e-05 | 0.1816602 | -0.0363216 | 0.0222784 | 0.0000461 | FALSE | 2.2603827 | ||||||||||||||||||
| cg06513814 | chr16 | 10647084 |
|
1602937 | 14806853 | AAACTAAAAAACATAATTACCTCTAAAAAAACAATAACTAACTAACATCA | AAACTAAAAAACGTAATTACCTCTAAAAAAACAATAACTAACTAACGTCG | I | A | Red | NA | NA | NA | NA | NA | NA | OpenSea | ATAACCCTTTACTCCTGCATCTCTATACCAAAATAAGTCTCCCTTCTGCGCCACTATTCC[CG]ACGCCAGTCAGCCACTGCCCTCTTAGAGGCAACCACGCTTCTCAGTTTCCTGTGCCTCCT | AAACTGAGAAGCGTGGTTGCCTCTAAGAGGGCAGTGGCTGACTGGCGTCG | EMP2 | NM_001424 | 5’UTR | 16:10554573-10554846 | 16:10646885-10647444 | Unclassified | EMP2;EMP2 | ENST00000536829.1;ENST00000359543.3 | 5’UTR;5’UTR | EMP2;EMP2;EMP2 | ENST00000342147.4;ENST00000536829.1;ENST00000359543.3 | 3’UTR;5’UTR;5’UTR | chr16:10646685-10647455 | 3 | TRUE | 7.66e-05 | 0.1816602 | 7.66e-05 | 0.1816602 | 0.0686919 | 0.0797305 | 0.0001650 | FALSE | -4.3114372 | |||||||||||
| cg16089727 | chr5 | 96736205 |
|
71793925 | TAAAACAACTTCAAATATCTTCCAATTTCTTTTCATTCAAAATACTCAAC | II | NA | NA | rs6885295 | 0.488859 | rs6885295 | 0.488859 | OpenSea | AGGAGTTTGTTCATTTTATTTATGTTACTATTAGGAGTACCATAGTTTGGTGCTTTGGCA[CG]CTGAGCACCTTGAATGAAAAGAAATTGGAAGACATTTGAAGCTGCCTCACAATCAATGTC | CGCTGAGCACCTTGAATGAAAAGAAATTGGAAGACATTTGAAGCTGCCTC | 5:96736088-96736219 | Unclassified_Cell_type_specific | RP11-155G15.2 | ENST00000504578.1 | 5’UTR | RP11-155G15.2 | ENST00000504578.1 | 5’UTR | chr5:96736205-96736635 | 3 | 7.66e-05 | 0.1816602 | 7.66e-05 | 0.1816602 | -0.2530266 | 1.0818568 | 0.0022389 | FALSE | -0.2967175 | ||||||||||||||||||||
| cg17089917 | chr19 | 13732340 |
|
58699527 | CACTAAATATCACCTATAACTAAACTTCTCAACAATACTAAAACACAAAC | II | NA | NA | NA | NA | NA | NA | OpenSea | TAGGTGCCTGCCACTGGGTATCACCTGTGGCTGGGCTTCTCAGCAATGCTAAGACACAGA[CG]CCATCGTCATCCTTGCAGTCAGCAGGGGGCACTGAGGCACAGAGGGCTGAGTGGCTCCCC | ACTGGGTATCACCTGTGGCTGGGCTTCTCAGCAATGCTAAGACACAGACG | CACNA1A | ENST00000574974.1 | 5’UTR | chr19:13732320-13732615 | 3 | 7.67e-05 | 0.1816602 | 7.67e-05 | 0.1816602 | 0.0480257 | 0.0389817 | 0.0000807 | FALSE | 2.7452933 | |||||||||||||||||||||||||
| cg03301213 | chr1 | 109817136 |
|
32754965 | ATATAAAACCCTAACTACRTATAACTTTATCCTTTCCTTTTAATAATAAC | II | NA | NA | NA | NA | NA | NA | OpenSea | AGTTTCCCATCTGCTGTGCCTCTGGGAGGAGAGGGACTCCTGGGGGGCCTGCCCCTCATA[CG]CCATCACCAAAAGGAAAGGACAAAGCCACACGCAGCCAGGGCTTCACACCCTTCAGGCTG | CGCCATCACCAAAAGGAAAGGACAAAGCCACACGCAGCCAGGGCTTCACA | CELSR2 | NM_001408 | 3’UTR | TRUE | CELSR2;CELSR2 | ENST00000498157.1;ENST00000271332.3 | 5’UTR;3’UTR | CELSR2;CELSR2;CELSR2 | ENST00000491918.1;ENST00000498157.1;ENST00000271332.3 | 5’UTR;5’UTR;3’UTR | chr1:109817065-109817335 | 3 | 7.67e-05 | 0.1816602 | 7.67e-05 | 0.1816602 | 0.0614316 | 0.0637876 | 0.0001320 | FALSE | 2.9866543 | ||||||||||||||||||
| cg04738410 | chr22 | 40672737 |
|
95719284 | ATAAAAATTTTACACACRACTACTTTCACTTTCATTAAACTACTCTCCTC | II | NA | NA | NA | NA | NA | NA | OpenSea | TTCCAAATGACACGCACTGACATCAAACTGTTTTCTCCTAACATAAACCAGTTTGGGTTA[CG]AGGAGAGCAGCCTAATGAAAGTGAAAGTAGTCGTGTGCAAAACTTCTATTTTAGAAAATC | CGAGGAGAGCAGCCTAATGAAAGTGAAAGTAGTCGTGTGCAAAACTTCTA | TNRC6B;TNRC6B;TNRC6B | NM_001024843;NM_015088;NM_001162501 | Body;Body;Body | 22:40672434-40672926 | Promoter_Associated_Cell_type_specific | TNRC6B | ENST00000497559.1 | TSS200 | TNRC6B | ENST00000497559.1 | TSS200 | chr22:40672345-40672855 | 3 | 7.71e-05 | 0.1816602 | 7.71e-05 | 0.1816602 | 0.0625810 | 0.0662648 | 0.0001371 | FALSE | -2.2366161 | |||||||||||||||||
| cg08855170 | chr3 | 27756139 |
|
6608401 | 44713223 | ATATAAAAAAAACACTAACCAAAATAAAAAAACTATAAATCTCCCTTCCA | ATATAAAAAAAACGCTAACCAAAATAAAAAAACTATAAATCTCCCTTCCG | I | A | Red | rs2581195 | 0.273142 | NA | NA | NA | NA | chr3:27756212-27756422 | N_Shore | GGGCTGTTGGGGGTGTGGGGAAGGCGCTGACCAGGATAGGGGGGCTATGAGTCTCCCTTC[CG]GAATCTAAATCAGTCATCCACAGTACATATATCTTAAAAAGCACATCTTCAACGCTTTTG | CGGAAGGGAGACTCATAGCCCCCCTATCCTGGTCAGCGCCTTCCCCACAC | 3:27730974-27731144 | 3:27755443-27756862 | Unclassified | chr3:27755425-27756915 | 3 | TRUE | 7.72e-05 | 0.1816602 | 7.72e-05 | 0.1816602 | 0.0490585 | 0.0407278 | 0.0000843 | FALSE | -3.7462919 | |||||||||||||||||||
| cg21507367 | chr12 | 27446544 |
|
47716194 | CCAAAATTTAATTACCCTAAAACACTAACAACTAAAAACCAAACCTTACC | II | NA | NA | NA | NA | NA | NA | OpenSea | TAAAGTGACTTCCAGAATTTGATTGCCCTGAGACACTGGCAGCTGAGGGCCAGACCTTGC[CG]CTTGGCAGACCGAGCAGGGCAGCCTGCTCGACAAGGCCCCTTGGCAGACAGTCAGCTCCC | CGGCAAGGTCTGGCCCTCAGCTGCCAGTGTCTCAGGGCAATCAAATTCTG | STK38L | NM_015000 | 5’UTR | STK38L;STK38L | ENST00000389032.3;ENST00000539577.1 | 5’UTR;5’UTR | STK38L;STK38L;STK38L;STK38L;STK38L;STK38L;STK38L;STK38L;STK38L;STK38L;STK38L | ENST00000544969.1;ENST00000541191.1;ENST00000389032.3;ENST00000545470.1;ENST00000544367.1;ENST00000539863.1;ENST00000434385.2;ENST00000540996.1;ENST00000539577.1;ENST00000546286.1;ENST00000543246.1 | TSS200;5’UTR;5’UTR;5’UTR;5’UTR;5’UTR;5’UTR;5’UTR;5’UTR;5’UTR;5’UTR | chr12:27446460-27446750 | 3 | 7.76e-05 | 0.1816602 | 7.76e-05 | 0.1816602 | 0.1016735 | 0.1751046 | 0.0003624 | FALSE | 3.2253666 | |||||||||||||||||||
| cg24888214 | chr11 | 129012999 |
|
47743141 | AACAATCCTATTTACCTTTCTTAACAACACAAATTTTATATCAAAATCTC | II | rs113669183 | 0.010064 | NA | NA | NA | NA | OpenSea | AGCAGCTGTCTATATGCTGGTAAAACTGCATATATATATATATATAATCAACTGAATAAA[CG]AGATTTTGATACAAAATTTGTGCTGTCAAGAAAGGCAAACAGGACTGCCAGTTTCCTGCA | CGAGATTTTGATACAAAATTTGTGCTGTCAAGAAAGGCAAACAGGACTGC | ARHGAP32 | NM_001142685 | Body | TRUE | ARHGAP32 | ENST00000356092.7 | 5’UTR | ARHGAP32 | ENST00000356092.7 | 5’UTR | chr11:129011939-129016541 | 6 | 7.78e-05 | 0.1816602 | 7.78e-05 | 0.1816602 | -0.0536740 | 0.0488321 | 0.0001011 | FALSE | 2.2043118 | ||||||||||||||||||
| cg24692969 | chr5 | 55555411 |
|
29718294 | CAAAATATTCAAACCTTAAATTCATTCAACAAAAACATACRATTCTCAAC | II | NA | NA | NA | NA | NA | NA | OpenSea | TGACACTGGGACAGGGTGTTCAAGCCTTGAGTTCATTCAGCAAGAACATACGATTCTCAA[CG]TAGACTCTTAGAACTTTGCTTTTATCTATCAAAAAGTTGCTATTTGTCCTGTATATATGT | AGGGTGTTCAAGCCTTGAGTTCATTCAGCAAGAACATACGATTCTCAACG | chr5:55554921-55555503 | 6 | 7.82e-05 | 0.1816602 | 7.82e-05 | 0.1816602 | -0.0381731 | 0.0247209 | 0.0000512 | FALSE | 3.1225587 | ||||||||||||||||||||||||||||
| cg16405337 | chr2 | 3045851 |
|
19731269 | AATTTAAAATTAAATTCCRATACAACAACCAATCATTCACTCACCAACAC | II | NA | NA | rs7420544 | 0.373862 | rs7420544 | 0.373862 | OpenSea | GAGGGGCCTTTGGTTTGGAGTTGGATTCCGGTACAACAGCCAGTCATTCACTCACCAGCA[CG]TCACCACCCTGGGGTAAATTTCAGCTCCGTTTTTCATTTTCTTTATCGGTTACTTAGCAT | CGTGCTGGTGAGTGAATGACTGGCTGTTGTACCGGAATCCAACTCCAAAC | LINC01250 | NR_110228 | Body | AC019118.2 | ENST00000457478.1 | 3’UTR | AC019118.2 | ENST00000457478.1 | 3’UTR | chr2:3045705-3046595 | 3 | 7.88e-05 | 0.1816602 | 7.88e-05 | 0.1816602 | 0.3391886 | 1.9548848 | 0.0040457 | FALSE | -1.3648949 | |||||||||||||||||||
| cg05021355 | chr3 | 195502116 |
|
7658139 | CTTATTAAATACCATTTATACAATACAAAACTAAATCCTCCCTAACTCCC | II | NA | NA | NA | NA | NA | NA | OpenSea | TCCAGGCACCACTTGTTAAATGCCATTTGTACAATGCAAAACTGAGTCCTCCCTGGCTCC[CG]TTGCCTACAGGATTCCCCGCATGCCGGCCGCACTTTTTGCTACCCTTCTTCTCATTTTCA | CGGGAGCCAGGGAGGACTCAGTTTTGCATTGTACAAATGGCATTTAACAA | MUC4;MUC4;MUC4 | NM_018406;NM_138297;NM_004532 | Body;Body;Body | chr3:195501825-195502130 | 3 | 7.90e-05 | 0.1816602 | 7.90e-05 | 0.1816602 | -0.0643146 | 0.0703252 | 0.0001455 | FALSE | 0.0688249 | |||||||||||||||||||||||||
| cg12551908 | chr7 | 66785137 |
|
24765835 | TAAATAACTATATTATTTTTTTACTCTTCTCTCCTTTTAAAACTCATATC | II | NA | NA | rs9443 | 0.319256 | rs9443 | 0.319256 | OpenSea | CTTTTTCATGCAGCTGCATTAATACTACATTGTCAAAGACAAAGACGAACATGAGACATG[CG]ATATGAGTTTTAAAAGGAGAGAAGAGCAAAAAAACAATACAGCTATCCAAGGAGCAAGTG | GGATAGCTGTATTGTTTTTTTGCTCTTCTCTCCTTTTAAAACTCATATCG | STAG3L4 | NM_022906 | 3’UTR | STAG3L4 | ENST00000416602.2 | 5’UTR | STAG3L4 | ENST00000416602.2 | 5’UTR | TRUE | 7.91e-05 | 0.1816602 | 7.91e-05 | 0.1816602 | 0.1928238 | 0.6322171 | 0.0013084 | FALSE | 0.4747858 | ||||||||||||||||||||
| cg10197305 | chr4 | 125112 |
|
93702315 | 72636267 | TATACACACCAACACCAACATATTCTAAAAAATACAAACAAACACCAACA | TATACGCACCGACACCAACGTATTCTAAAAAATACGAACAAACACCAACG | I | T | Red | NA | NA | NA | NA | NA | NA | chr4:124332-124841 | S_Shore | CCAACTTTGCCGCCAGTCCCCTTGCCCTGTGCGCCTCCTCCGCGTGGCTGTTCCTGAATA[CG]CTGGTGTCTGTTCGCATCTTTTAGAATACGCTGGTGTCGGTGCGCACAGCGCTTCTCTTA | CGCTGGTGTCTGTTCGCATCTTTTAGAATACGCTGGTGTCGGTGCGCACA | ZNF718 | NM_001039127 | Body | DMR | 4:114333-115413 | ZNF718;ZNF718;ZNF718;ZNF718;ZNF718;ZNF718 | ENST00000511079.1;ENST00000513304.1;ENST00000513304.1;ENST00000513889.1;ENST00000511079.1;ENST00000510175.1 | 1stExon;1stExon;5’UTR;5’UTR;5’UTR;5’UTR | ZNF718;ZNF718;ZNF718;ZNF718;ZNF718;ZNF718 | ENST00000511079.1;ENST00000513304.1;ENST00000513304.1;ENST00000513889.1;ENST00000511079.1;ENST00000510175.1 | 1stExon;1stExon;5’UTR;5’UTR;5’UTR;5’UTR | chr4:124980-125290 | 3 | TRUE | 7.92e-05 | 0.1816602 | 7.92e-05 | 0.1816602 | 0.1717530 | 0.5017874 | 0.0010385 | FALSE | -4.4673721 | |||||||||||
| cg17687451 | chr3 | 29227007 |
|
92666836 | AATAAAAAACTAAACAACCAATATTTAAATCTCAAACCCCACTTCTAATC | II | rs6779897 | 0.167306 | NA | NA | NA | NA | OpenSea | TCATTTTAAGGGTTAGTGAAATGAAGTTCAGAAAAATTAAGTATCTTTTCTTAAGTTACA[CG]ACCAGAAGTGGGGCCTGAGATTCAAACATTGGCTGTCTAGCCTCCCACTAGTATTCTTAT | CGACCAGAAGTGGGGCCTGAGATTCAAACATTGGCTGTCTAGCCTCCCAC | TRUE | TRUE | 7.95e-05 | 0.1816602 | 7.95e-05 | 0.1816602 | -0.0450888 | 0.0345994 | 0.0000716 | FALSE | 3.0336818 | ||||||||||||||||||||||||||||
| cg22087119 | chr3 | 100353884 |
|
29691133 | ATACCAATCCATATTATCATTAATAAAACTAAATATCCATACRCRCRCAC | II | NA | NA | NA | NA | NA | NA | OpenSea | TGCCATCTAGTGAAAACCAAGACACACACACACACACACACACACACACATACACACACA[CG]TGCGCGCGCATGGACACCCAGCTTCACCAATGACAATATGGATTGGCATGTTTTAGCCTC | CGTGCGCGCGCATGGACACCCAGCTTCACCAATGACAATATGGATTGGCA | ADGRG7;ADGRG7 | NM_001308362;NM_032787 | TSS1500;Body | GPR128 | ENST00000475887.1 | TSS1500 | GPR128;GPR128;GPR128 | ENST00000481361.1;ENST00000493081.1;ENST00000475887.1 | TSS1500;TSS1500;TSS1500 | chr3:100353460-100354035 | 3 | 7.96e-05 | 0.1816602 | 7.96e-05 | 0.1816602 | 0.0496372 | 0.0419513 | 0.0000868 | FALSE | -2.3249147 | |||||||||||||||||||
| cg05712748 | chr1 | 43472312 |
|
91696223 | ACCTATACACRTATATAAAATCAAACRTAAACAAATCTATAAAACCACAC | II | NA | NA | rs1754140 | 0.190975 | rs1754140 | 0.190975 | chr1:43472867-43473334 | N_Shore | AGCACAAGCCGACCTGTGCACGTGTGTGAGGTCAGGCGTGGACAGGTCTGTGGGACCACA[CG]TACGGGCACGCGCACGGGGATAGTGAGTTCCATGGAGGCATCCTGTAGTAGGGAACCCGC | CGTGTGGTCCCACAGACCTGTCCACGCCTGACCTCACACACGTGCACAGG | TRUE | 1:43244899-43244961 | chr1:43471920-43472395 | 3 | TRUE | 7.97e-05 | 0.1816602 | 7.97e-05 | 0.1816602 | 0.3857603 | 2.5342811 | 0.0052448 | FALSE | 2.0213709 | ||||||||||||||||||||||||
| cg21627658 | chr5 | 75903597 |
|
42653230 | ATTACTATAACAACCAAACCACTACTAAAAAAAATTCAAAACATTAAAAC | II | NA | NA | NA | NA | NA | NA | OpenSea | GCTCCTAGTGTCCCGCTACAGAGCTCAGTCCCCCAGGCTTCTGCCCTTCTCCACAACCTC[CG]TCTTAATGCTCTGAATCTCCTTTAGCAGTGGTTTGGTTGCTACAGCAACTGCCACCCAAG | TTGCTGTAGCAACCAAACCACTGCTAAAGGAGATTCAGAGCATTAAGACG | IQGAP2;IQGAP2;IQGAP2;IQGAP2 | NM_001285462;NM_001285461;NM_006633;NM_001285460 | TSS1500;TSS1500;Body;Body | TRUE | CTD-2236F14.1;IQGAP2;IQGAP2 | ENST00000511327.1;ENST00000545384.1;ENST00000502745.1 | 3’UTR;TSS1500;TSS1500 | CTD-2236F14.1;IQGAP2;IQGAP2;IQGAP2;IQGAP2 | ENST00000511327.1;ENST00000514001.1;ENST00000509074.1;ENST00000502745.1;ENST00000504254.1 | 3’UTR;TSS1500;TSS1500;TSS1500;TSS1500 | chr5:75903545-75903770 | 3 | 8.06e-05 | 0.1816602 | 8.06e-05 | 0.1816602 | 0.0718873 | 0.0881873 | 0.0001825 | FALSE | 2.7851536 | ||||||||||||||||||
| cg08688335 | chr8 | 144635260 |
|
7662115 | CRAAACTTCAAATACCTACCAAACACTATCCTAACCTAACAACAACTCCC | II | NA | NA | NA | NA | NA | NA | chr8:144635308-144636026 | N_Shore | CCAGCGAGGAGTGAGGCTGCCAGGACATAGTGGGGACTTCCCCGGCACCCCAGACCCCCT[CG]GGAGCTGCTGCCAGGCCAGGACAGTGTCTGGCAGGCACCTGAAGTCCCGCCCTGCGCGGG | CGGGAGCTGCTGCCAGGCCAGGACAGTGTCTGGCAGGCACCTGAAGTCCC | GSDMD | NM_001166237 | TSS1500 | TRUE | 8:144635072-144636483 | Promoter_Associated | GSDMD | ENST00000526406.1 | TSS200 | GSDMD;GSDMD | ENST00000529854.1;ENST00000526406.1 | TSS1500;TSS200 | chr8:144635125-144636435 | 3 | TRUE | 8.06e-05 | 0.1816602 | 8.06e-05 | 0.1816602 | 0.0440912 | 0.0331748 | 0.0000687 | FALSE | -4.3821985 | ||||||||||||||
| cg15824291 | chr2 | 182521222 |
|
8795414 | TTAAAACTCAAAATTTTCTACTAAAACTCTAAACAAAAACTACTTATAAC | II | rs7570291 | 0.482759 | NA | NA | NA | NA | chr2:182521221-182521927 | Island | TTACCTCCCCTTTGGGGCTCAAGATTTTCTGCTGAGACTCTGAGCAAAAGCTGCTTGTGA[CG]TTTGCCCGGGGAAGGTCTCGGAGGCGGGAAAAGGCTAGGTAGCGAAAGAATCCCTGGGGG | CGTCACAAGCAGCTTTTGCTCAGAGTCTCAGCAGAAAATCTTGAGCCCCA | CERKL;CERKL;CERKL;CERKL;CERKL;CERKL;CERKL | NM_001030311;NM_001030312;NR_027689;NM_201548;NR_027690;NM_001160277;NM_001030313 | Body;Body;Body;Body;Body;Body;Body | 2:182521087-182521979 | Unclassified | CERKL | ENST00000479558.1 | 3’UTR | CERKL;CERKL;CERKL;CERKL | ENST00000497337.1;ENST00000494398.1;ENST00000479558.1;ENST00000476070.1 | 3’UTR;3’UTR;3’UTR;3’UTR | chr2:182521080-182521970 | 3 | TRUE | 8.06e-05 | 0.1816602 | 8.06e-05 | 0.1816602 | 0.0474695 | 0.0384580 | 0.0000796 | FALSE | -2.4057663 | |||||||||||||||
| cg08459071 | chr10 | 5753817 |
|
38764859 | CACTCACCAAACACAATAAAAATCATTATATCTCTAAAATTTCCTCACCC | II | NA | NA | NA | NA | NA | NA | OpenSea | GAAAGAAAGTGATTTTATAATACAACTCACAGGAAGTAAAACTCAATAGACTCTTCTTGA[CG]GGTGAGGAAATCCCAGAGATACAATGATTTCTATTGTGTCTGGTGAGTGGGCAATAGTAG | CGGGTGAGGAAATCCCAGAGATACAATGATTTCTATTGTGTCTGGTGAGT | FAM208B | NM_017782 | 5’UTR | FAM208B;FAM208B | ENST00000442808.2;ENST00000480839.1 | 5’UTR;5’UTR | FAM208B;FAM208B;FAM208B;FAM208B;FAM208B;FAM208B;FAM208B;FAM208B | ENST00000527124.1;ENST00000442808.2;ENST00000480839.1;ENST00000477043.1;ENST00000473789.1;ENST00000496681.1;ENST00000532424.1;ENST00000463468.1 | 5’UTR;5’UTR;5’UTR;5’UTR;5’UTR;5’UTR;5’UTR;5’UTR | chr10:5753700-5753930 | 3 | 8.11e-05 | 0.1816602 | 8.11e-05 | 0.1816602 | 0.0520517 | 0.0462966 | 0.0000958 | FALSE | -1.2216222 | |||||||||||||||||||
| cg07453055 | chr1 | 11786594 |
|
87757993 | CCCTAACTTCTATTAAACTACCTTATCCTTTCTTATCTTACAAAAATCCC | II | NA | NA | NA | NA | NA | NA | OpenSea | GGCCGGTCCCCAGCAGCTTCCTTCCGAGCCAAGGTGGCCGAGTGCAGAGAAGAGCAGAAG[CG]GGACTCCTGCAAGATAAGAAAGGACAAGGCAGCTCAACAGAAGCCAGGGCTGGGGCAGGG | CGGGACTCCTGCAAGATAAGAAAGGACAAGGCAGCTCAACAGAAGCCAGG | TRUE | 8.11e-05 | 0.1816602 | 8.11e-05 | 0.1816602 | -0.0435467 | 0.0324047 | 0.0000671 | FALSE | 2.1076637 | |||||||||||||||||||||||||||||
| cg03786924 | chr6 | 73331680 |
|
14641960 | AAACTACAAAAAAAACCRAAAAATCCCAATTTCTAACAACCTTTAACTTC | II | NA | NA | NA | NA | NA | NA | chr6:73330942-73333109 | Island | ATGAGGGAGCAAGAGAAACCCTCTCAAAGTGACGCCCCAAACAGGTCCGGATTTAGAATT[CG]AAGCTAAAGGCTGTTAGAAATTGGGACTCCTCGGCCTCCTCTGCAGCCCCTCCTTTCCCG | CGAAGCTAAAGGCTGTTAGAAATTGGGACTCCTCGGCCTCCTCTGCAGCC | KCNQ5;KCNQ5;KCNQ5;KCNQ5;KCNQ5;KCNQ5;KCNQ5;KCNQ5;KCNQ5;KCNQ5 | NM_019842;NM_001160132;NM_001160132;NM_001160130;NM_001160130;NM_001160134;NM_001160133;NM_001160133;NM_019842;NM_001160134 | 1stExon;1stExon;5’UTR;1stExon;5’UTR;5’UTR;1stExon;5’UTR;5’UTR;1stExon | high-CpG:73388245-73388619 | DMR | 6:73387357-73389819 | KCNQ5;KCNQ5;KCNQ5;KCNQ5;KCNQ5;KCNQ5;KCNQ5 | ENST00000403813.2;ENST00000342056.2;ENST00000342056.2;ENST00000451840.2;ENST00000451840.2;ENST00000370398.1;ENST00000370392.1 | TSS1500;5’UTR;1stExon;5’UTR;1stExon;TSS200;TSS200 | KCNQ5;KCNQ5;KCNQ5;KCNQ5;KCNQ5;KCNQ5;KCNQ5 | ENST00000355635.3;ENST00000342056.2;ENST00000342056.2;ENST00000355194.4;ENST00000355194.4;ENST00000370398.1;ENST00000370392.1 | TSS1500;5’UTR;1stExon;5’UTR;1stExon;TSS200;TSS200 | chr6:73330705-73332295 | 3 | TRUE | 8.12e-05 | 0.1816602 | 8.12e-05 | 0.1816602 | 0.0393572 | 0.0264775 | 0.0000548 | FALSE | -3.9770511 | ||||||||||||||
| cg13857519 | chr11 | 18062735 |
|
95760187 | TAACACTTCATTATACCAAATCTCAAATAATTTCCCCAAATATTCTATTC | II | NA | NA | NA | NA | NA | NA | OpenSea | GCCCACAATCTTAGCACTTCATTATACCAGGTCTCAAATGGTTTCCCCAAATGTTCTATT[CG]AACATATCTCACCTTCTAACAAGGCAGCAAGCTCCTCCAGAGTGGGGACAAGGCTTTCTA | AGCACTTCATTATACCAGGTCTCAAATGGTTTCCCCAAATGTTCTATTCG | TPH1 | NM_004179 | TSS1500 | TPH1;TPH1;TPH1 | ENST00000250018.2;ENST00000250018.2;ENST00000341556.2 | 1stExon;5’UTR;TSS1500 | TPH1;TPH1;TPH1;TPH1 | ENST00000250018.2;ENST00000250018.2;ENST00000417164.1;ENST00000341556.2 | 1stExon;5’UTR;TSS1500;TSS1500 | TRUE | 8.14e-05 | 0.1816602 | 8.14e-05 | 0.1816602 | 0.0367032 | 0.0230357 | 0.0000477 | FALSE | 3.2193446 | ||||||||||||||||||||
| cg02825052 | chr11 | 85753082 |
|
61666229 | TTACTACRTAAACCTTCTTAATATAAAAAAATATAAACCTAAAACTTTCC | II | NA | NA | NA | NA | NA | NA | OpenSea | AATGTTTTAAATTACTACGTAAGCCTTCTTAATATAAGAAAGTGTAAACCTAGAGCTTTC[CG]TTGGCATTCTGGTAAACTCTGCATTCCTACCACTAGATGGCAGACTGTACAGAGGAACAA | CGGAAAGCTCTAGGTTTACACTTTCTTATATTAAGAAGGCTTACGTAGTA | PICALM;PICALM | NM_001008660;NM_007166 | Body;Body | TRUE | 11:85752909-85753718 | Unclassified_Cell_type_specific | PICALM;PICALM | ENST00000528411.1;ENST00000528398.1 | 3’UTR;5’UTR | PICALM;PICALM;PICALM | ENST00000528411.1;ENST00000525162.1;ENST00000528398.1 | 3’UTR;5’UTR;5’UTR | chr11:85753020-85753370 | 3 | TRUE | 8.15e-05 | 0.1816602 | 8.15e-05 | 0.1816602 | 0.0377819 | 0.0244132 | 0.0000505 | FALSE | -4.7681563 | |||||||||||||||
| cg15726575 | chr6 | 33936083 |
|
26600249 | TTTTACTTCCTAAATCTTTCCTACATCTATCCACTTTTCCCTATCTTATC | II | rs73402454 | 0.016910 | NA | NA | NA | NA | OpenSea | AATCCTCTAGATTTTGCTTCCTAAATCTTTCCTGCATCTGTCCACTTTTCCCTATCTTAT[CG]CCACCAAGCCTTGTTCAGCCATCTTCACTCAAAATAGCAACCTAACTGGGATTACCAGAT | TTTGCTTCCTAAATCTTTCCTGCATCTGTCCACTTTTCCCTATCTTATCG | chr6:33935719-33936141 | 6 | chr6:33935543-33936179 | 6 | 8.17e-05 | 0.1816602 | 8.17e-05 | 0.1816602 | 0.0431024 | 0.0317943 | 0.0000658 | FALSE | 1.6001765 | ||||||||||||||||||||||||||
| cg26362491 | chr1 | 229706215 |
|
82803160 | 20784161 | ACAATAACAACAACAATAAAACATAAACATAAACACCAAATACAACAACA | ACGATAACGACGACAATAAAACGTAAACGTAAACGCCGAATACAACGACG | I | C | Grn | rs12096929 | 0.013047 | NA | NA | rs12750869 | 0.154968 | OpenSea | AGAAAGCACAATGTGAAGAAAAAGAGGCGAGAACGACCCCCGAACCAACCAAAGCCCGCG[CG]CCGCTGCATCCGGCGCCCACGCCCACGTCCCACTGCCGTCGCCACCGCCGCCGAGATCAT | GCGGTGGCGACGGCAGTGGGACGTGGGCGTGGGCGCCGGATGCAGCGGCG | 1:227772818-227772892 | TRUE | 8.22e-05 | 0.1816602 | 8.22e-05 | 0.1816602 | 0.1170831 | 0.2348690 | 0.0004861 | FALSE | 3.1391091 | ||||||||||||||||||||||||
| cg20781401 | chr2 | 8418724 |
|
99661386 | ACTCCTATAATTTTATAACATACTCTCRAATTTCTTTTATCTTTATCTCC | II | NA | NA | NA | NA | NA | NA | OpenSea | GAAAGTACTAGGGAGGAAAAGGTGTCATCGAGGCCTGGATCTTTTAGAAACAAAGATACA[CG]GAGATAAAGATAAAAGAAACCCGAGAGCATGCTACAAAATCATAGGAGTTGAAAACCGAA | CGGAGATAAAGATAAAAGAAACCCGAGAGCATGCTACAAAATCATAGGAG | LINC00299 | NR_034135 | Body | AC007464.1;LINC00299;LINC00299 | ENST00000456681.1;ENST00000430192.1;ENST00000442956.1 | TSS1500;3’UTR;3’UTR | AC007464.1;LINC00299;LINC00299 | ENST00000456681.1;ENST00000430192.1;ENST00000442956.1 | TSS1500;3’UTR;3’UTR | chr2:8417923-8418802 | 3 | 8.25e-05 | 0.1816602 | 8.25e-05 | 0.1816602 | -0.0883969 | 0.1339766 | 0.0002773 | FALSE | 2.5689046 | |||||||||||||||||||
| cg15866116 | chr1 | 201144537 |
|
18757974 | ATAAAACCAACCTTTCCCTTTCAACTTCTATTCCTATTAATATATATACC | II | NA | NA | rs61819513 | 0.159817 | rs61819513 | 0.159817 | OpenSea | TTCCTGTGGTTATAGAACCAACCTTTCCCTTTCAGCTTCTGTTCCTATTAGTATGTGTGC[CG]CATGTTGCAATAATTGTTTGAACAGAGGCAGGCATCTTGTTTCAGTGGGATTTCATTTGG | CGGCACACATACTAATAGGAACAGAAGCTGAAAGGGAAAGGTTGGTTCTA | chr1:201144385-201144635 | 3 | 8.28e-05 | 0.1816602 | 8.28e-05 | 0.1816602 | 0.1440428 | 0.3560152 | 0.0007368 | FALSE | 3.4800552 | ||||||||||||||||||||||||||||
| cg19987296 | chr2 | 202655135 |
|
28618940 | CTATACTTTACTTCTAAATAACTTCATCTAATCCCTTAACTTTAAACRAC | II | NA | NA | NA | NA | NA | NA | OpenSea | ATTGACAGTTGGTGTTGTAAAGAAGTCACGCTGGAGATTTGAGAATTATTCATAGATAGG[CG]CCGTTCAAAGCCAAGGGACTAGATGAAGTTATCTAGAAGCAAAGTACAGATAAGGCCCAG | CGCCGTTCAAAGCCAAGGGACTAGATGAAGTTATCTAGAAGCAAAGTACA | CDK15 | ENST00000410091.3 | TSS200 | CDK15;CDK15 | ENST00000451080.1;ENST00000493754.1 | TSS200;TSS200 | 8.30e-05 | 0.1816602 | 8.30e-05 | 0.1816602 | -0.0584576 | 0.0586647 | 0.0001214 | FALSE | 3.2802618 | ||||||||||||||||||||||||
| cg14329685 | chr9 | 72288179 |
|
88693542 | TATCTTTAAACCTAACACAAACCATCCRCCCTAAATATAACTCCTAACTC | II | NA | NA | NA | NA | NA | NA | chr9:72286804-72288081 | S_Shore | CGGAACTTAAGTGTCTTTGAGCCTAGCACAGGCCATCCGCCCTAGATATGGCTCCTAACT[CG]AGAGGCCACCCTTTGCGGCAGGGACCAGGTGGCAAGTGCTGTGCATTAATGAAAAGCTGT | GTCTTTGAGCCTAGCACAGGCCATCCGCCCTAGATATGGCTCCTAACTCG | APBA1 | NM_001163 | TSS1500 | 9:71476508-71478000 | 9:72286613-72289525 | Promoter_Associated | APBA1;RP11-109D9.4 | ENST00000265381.3;ENST00000567129.1 | TSS1500;5’UTR | APBA1;RP11-109D9.4 | ENST00000265381.3;ENST00000567129.1 | TSS1500;5’UTR | chr9:72287820-72288375 | 3 | TRUE | 8.31e-05 | 0.1816602 | 8.31e-05 | 0.1816602 | 0.0416311 | 0.0297588 | 0.0000616 | FALSE | -4.2499759 | ||||||||||||||
| cg17779733 | chr22 | 49589242 |
|
80723163 | CACCCAAATCTAACTTACAAATAAAACCRAAATACTACTTACACACAAAC | II | NA | NA | rs940114 | 0.377340 | rs940114 | 0.377340 | OpenSea | TATCACCGATGCACCCAGGTCTAACTTGCAAATGAAGCCGGAATGCTGCTTACACACAGG[CG]CACACAGAGAGAGCATGGACAAAGAAGAGCAGAGGCTGTGTGTTCTCCATGCTGGCGGTC | CGCCTGTGTGTAAGCAGCATTCCGGCTTCATTTGCAAGTTAGACCTGGGT | chr22:49588848-49590507 | 6 | 8.43e-05 | 0.1816602 | 8.43e-05 | 0.1816602 | 0.1322347 | 0.3010659 | 0.0006231 | FALSE | 1.7188733 | ||||||||||||||||||||||||||||
| cg16504656 | chr20 | 43364881 |
|
7669124 | RTCACTACCAAAATACTTACTAACCAAAACACAAAATCTATATATATTAC | II | rs6031772 | 0.050570 | NA | NA | NA | NA | OpenSea | GCCATTGGAACGTCACTGCCAAAATGCTTACTAGCCAAAGCACAAAGTCTATGTGTGTTA[CG]TAACATTCCCTATGGGTGCTTCTGCTTGGTGGGCTCCCCTACATGGTGATACAGGGACTC | CGTAACACACATAGACTTTGTGCTTTGGCTAGTAAGCATTTTGGCAGTGA | 20:43364862-43365279 | Unclassified_Cell_type_specific | RP11-445H22.4;RP11-445H22.4;RP11-445H22.4 | ENST00000427598.1;ENST00000445420.1;ENST00000427303.1 | 3’UTR;3’UTR;3’UTR | RP11-445H22.4;RP11-445H22.4;RP11-445H22.4 | ENST00000427598.1;ENST00000445420.1;ENST00000427303.1 | 3’UTR;3’UTR;3’UTR | chr20:43364644-43365706 | 6 | chr20:43364537-43365686 | 6 | 8.43e-05 | 0.1816602 | 8.43e-05 | 0.1816602 | 0.0444060 | 0.0339547 | 0.0000703 | FALSE | 2.5023299 | ||||||||||||||||||
| cg01762315 | chr2 | 47164967 |
|
62702267 | TTAACAAAAAACTAATTACAACACATTTTACTTTCACAAAAAAAACTACC | II | NA | NA | rs10202814 | 0.144375 | NA | NA | chr2:47167858-47168978 | N_Shelf | TAGGAAGCTGAAGGGGTTTGGGGAAGCTGTGAACGTTAGTCAAGGTCTTTTGGAGGCTAT[CG]GCAGTCTTCCCTGTGAAAGCAAAATGTGCTGTAATTAGTTCTTTGTCAAGAGAGAAGTCT | CGGCAGTCTTCCCTGTGAAAGCAAAATGTGCTGTAATTAGTTCTTTGTCA | MCFD2;MCFD2 | NM_001171508;NM_001171511 | 5’UTR;Body | 2:47164293-47165224 | Unclassified | MCFD2;MCFD2 | ENST00000409147.1;ENST00000409207.1 | 5’UTR;5’UTR | MCFD2;MCFD2;MCFD2;MCFD2;MCFD2 | ENST00000470873.1;ENST00000479225.1;ENST00000409147.1;ENST00000487121.1;ENST00000409207.1 | 3’UTR;3’UTR;5’UTR;3’UTR;5’UTR | chr2:47164239-47165330 | 6 | TRUE | 8.45e-05 | 0.1816602 | 8.45e-05 | 0.1816602 | 0.0827772 | 0.1180361 | 0.0002443 | FALSE | 1.0405420 | |||||||||||||||
| cg05330509 | chr2 | 146497156 |
|
26666172 | TACCACAAACCAACCTCRTTATATTCAAATTATAAATTTTATCCCTTATC | II | NA | NA | NA | NA | NA | NA | OpenSea | AAATTTGTTTTTACCACAAACCAACCTCGTTGTGTTCAGATTGTAAATTTTGTCCCTTGT[CG]TCTGAGCTATCTCAGTTCAAATCTCAGTTCATTCTCACACTTTCTGCTAGGCTGATTTGG | ACCACAAACCAACCTCGTTGTGTTCAGATTGTAAATTTTGTCCCTTGTCG | chr2:146497116-146497563 | 4 | 8.46e-05 | 0.1816602 | 8.46e-05 | 0.1816602 | -0.0517968 | 0.0462281 | 0.0000957 | FALSE | 1.9989821 | ||||||||||||||||||||||||||||
| cg01570143 | chr5 | 14583005 |
|
89632896 | ACAAAAACAACAACACAACCTAAAAATTCAATCAAATACTAAATCTCRAC | II | NA | NA | rs152621 | 0.249700 | rs152621 | 0.249700 | chr5:14581497-14582569 | S_Shore | AAAATCACCCGACAAGGGCAGCAGCACAGCCTGGGAGTTCAGTCAGGTGCTGGGTCTCGA[CG]TCTCCACCCGCTGGCTCGGTAGCGGGGTCCTCTCCTAACCAGCCCCGAGAAAGATGAGCA | CGTCGAGACCCAGCACCTGACTGAACTCCCAGGCTGTGCTGCTGCCCTTG | FAM105A | NM_019018 | Body | chr5:14582921-14582921 | chr5:14582880-14583335 | 3 | 8.47e-05 | 0.1816602 | 8.47e-05 | 0.1816602 | 0.1252040 | 0.2701272 | 0.0005590 | FALSE | -1.7752666 | |||||||||||||||||||||||
| cg15684702 | chr1 | 45297445 |
|
62810279 | 43734114 | ACATAACCCAAAATATCCCTAACAAATAATTAAAAAACTATTTCCATACA | ACGTAACCCGAAATATCCCTAACAAATAATTAAAAAACTATTTCCGTACG | I | T | Red | NA | NA | NA | NA | NA | NA | OpenSea | AGGCGGAGCCCCCTTGGAGTTTGGCTCCCTCCCAGAAGCAGTCGAGGGGGGTGAGGATCA[CG]CACGGAAACAGCTTCTCAATCATCTGCCAGGGATACCCCGGGCCACGTCAGTCCTGCCCC | CGCACGGAAACAGCTTCTCAATCATCTGCCAGGGATACCCCGGGCCACGT | PTCH2;PTCH2 | NM_001166292;NM_003738 | Body;Body | TRUE | chr1:45296785-45297475 | 3 | TRUE | 8.47e-05 | 0.1816602 | 8.47e-05 | 0.1816602 | 0.0394823 | 0.0268621 | 0.0000556 | FALSE | 0.9984089 | |||||||||||||||||||
| cg08123147 | chr16 | 804836 |
|
56760212 | AATTCTACAAAAAATTAAACATAAAATAACCACATAACCCAACAATTCCC | II | rs116564054 | 0.015204 | NA | NA | NA | NA | OpenSea | GCTGGGAACATGGGTGTGTGAGGATCTGTTCAAGTTCCCGTTTTTTATTCTTTTGTTTTG[CG]GGAATTGCTGGGTCATGTGGTCATTCTATGTTTAACTTTTTGCAGAACCACCAAGCTGTT | CGGGAATTGCTGGGTCATGTGGTCATTCTATGTTTAACTTTTTGCAGAAC | MSLN | ENST00000446427.2 | 5’UTR | MSLN | ENST00000446427.2 | 5’UTR | chr16:804760-805030 | 3 | 8.47e-05 | 0.1816602 | 8.47e-05 | 0.1816602 | 0.0482415 | 0.0401065 | 0.0000830 | FALSE | -2.0552612 | ||||||||||||||||||||||
| cg09225462 | chr6 | 5995766 |
|
69612112 | AATCCTTATTATAAACATATCAAACCAATTCCAAAACCCTACCTAAACCC | II | NA | NA | NA | NA | NA | NA | chr6:5996185-5996486 | N_Shore | TTTCTCGTGCCAGTTTCCTCCCTCCGTCCGATTTCCTTTCCCACGGGCCCTGGAGTTCCT[CG]GGCCCAGGCAGGGCTCTGGAACTGGCCTGACATGTTCATAATAAGGATTGTCAGACACGG | CGGGCCCAGGCAGGGCTCTGGAACTGGCCTGACATGTTCATAATAAGGAT | CDMR | 6:5939909-5940766 | chr6:5995325-5998235 | 3 | TRUE | 8.47e-05 | 0.1816602 | 8.47e-05 | 0.1816602 | 0.0403053 | 0.0279979 | 0.0000579 | FALSE | -2.9225765 | ||||||||||||||||||||||||
| cg06889370 | chr4 | 102181304 |
|
40618834 | TCTTAATAACTCATCTTCAACTACACAAACTTCTAAATACRAAACAAATC | II | NA | NA | NA | NA | NA | NA | OpenSea | ATTCCAGTTTCTCTTAATGACTCATCTTCAGCTGCACAGGCTTCTGAATACGGGGCAAAT[CG]TATCAACGACAAAGGTGCAAACTGCTATTCTAATAAAGATCTTGGCATCACAGGATTTCA | CTTAATGACTCATCTTCAGCTGCACAGGCTTCTGAATACGGGGCAAATCG | PPP3CA;PPP3CA;PPP3CA | NM_001130691;NM_000944;NM_001130692 | Body;Body;Body | PPP3CA | ENST00000507176.1 | 5’UTR | PPP3CA;PPP3CA;PPP3CA | ENST00000507176.1;ENST00000525819.1;ENST00000529324.1 | 5’UTR;5’UTR;5’UTR | chr4:102181140-102181430 | 3 | 8.48e-05 | 0.1816602 | 8.48e-05 | 0.1816602 | -0.0455494 | 0.0357636 | 0.0000740 | FALSE | 2.9413236 | |||||||||||||||||||
| cg01086446 | chr5 | 161273853 |
|
81697253 | TAATAAACTCACTAATCATTTTCTCCTAATAAATTCCTAACAAAAAAAAC | II | NA | NA | NA | NA | NA | NA | OpenSea | GTTATGGACTGGCTACTCAGATTTTTTTCTTCACTTGCTCAGGCTCCGCCCCATCTGAAA[CG]TCTTCTCTGCTAGGAACTCACTAGGAGAAAATGACCAGTGAGCTTACCAAAGCTCAGACC | CGTCTTCTCTGCTAGGAACTCACTAGGAGAAAATGACCAGTGAGCTTACC | GABRA1;GABRA1;GABRA1 | NM_000806;NM_001127644;NM_001127643 | TSS1500;TSS1500;TSS1500 | GABRA1;GABRA1;GABRA1 | ENST00000023897.6;ENST00000428797.2;ENST00000393943.4 | TSS1500;TSS1500;TSS1500 | GABRA1;GABRA1;GABRA1 | ENST00000023897.6;ENST00000428797.2;ENST00000393943.4 | TSS1500;TSS1500;TSS1500 | chr5:161273502-161275666 | 6 | TRUE | 8.50e-05 | 0.1816602 | 8.50e-05 | 0.1816602 | 0.0422394 | 0.0307656 | 0.0000637 | FALSE | -3.4261068 | ||||||||||||||||||
| cg22993554 | chr8 | 18698050 |
|
64787279 | RATAATTAATATATACTAAACACTTCCRATATTCCAAATTAATCTAAAAC | II | NA | NA | rs140405447 | 0.028800 | rs140405447 | 0.028800 | OpenSea | CAGACAAAAACGATAGTTAGTGTGTACTAAGCACTTCCGATATTCCAGGTTGGTCTAAGA[CG]TTTACAGGCATTAACACATTTAATCTTCACAACAATCCTGCGAAGTAGGTATTATTAGTA | CGTCTTAGACCAACCTGGAATATCGGAAGTGCTTAGTACACACTAACTAT | PSD3 | NM_015310 | Body | TRUE | PSD3;PSD3 | ENST00000518303.1;ENST00000519851.1 | 3’UTR;5’UTR | TRUE | 8.53e-05 | 0.1816602 | 8.53e-05 | 0.1816602 | -0.0845148 | 0.1232670 | 0.0002551 | FALSE | 3.1007547 | ||||||||||||||||||||||
| cg11526113 | chr20 | 31560299 |
|
15787259 | AAACAAACCAAAACAAACTAATCACCATCTACAACAAAAAATAAAAACTC | II | rs17123911 | 0.170045 | NA | NA | NA | NA | OpenSea | TTTTGTACTTTTTCTCTAAACCACATCAAAACCAGGAAACCAGTCAGCCTGCCTGTCTCA[CG]AGCCCCTATTTCCTGTTGTAGATGGTGACCAGCTTGTCCTGGTTTGCTTGGAACTGTCCT | CGAGCCCCTATTTCCTGTTGTAGATGGTGACCAGCTTGTCCTGGTTTGCT | chr20:31560072-31560072 | 20:31559409-31560631 | Promoter_Associated | chr20:31560080-31560350 | 3 | 8.55e-05 | 0.1816602 | 8.55e-05 | 0.1816602 | -0.0642016 | 0.0711669 | 0.0001473 | FALSE | -5.1145858 | |||||||||||||||||||||||||
| cg06716730 | chr17 | 35851459 |
|
39654987 | AAAAACRCCTAAAAATTCACATCAAAAACACTTCACATCAAAAACAAACC | II | NA | NA | NA | NA | NA | NA | chr17:35849290-35850483 | S_Shore | TCTTCTTCGCCAGAGACGCCTGAGAATTCACATCAGGGACACTTCACATCAGGGACAGGC[CG]GGGCAGAGACCCTGACCTGAGGGAGGGACGAGGGTTGCCACGAGGAGGTAGGAAGGAGCC | GAGACGCCTGAGAATTCACATCAGGGACACTTCACATCAGGGACAGGCCG | DUSP14 | NM_007026 | 5’UTR | RDMR | 17:35851034-35851616 | Promoter_Associated | DUSP14;DUSP14 | ENST00000394386.1;ENST00000394389.4 | TSS200;5’UTR | DUSP14;DUSP14 | ENST00000394386.1;ENST00000394389.4 | TSS200;5’UTR | chr17:35851420-35851670 | 3 | TRUE | 8.55e-05 | 0.1816602 | 8.55e-05 | 0.1816602 | -0.0761816 | 0.1002055 | 0.0002074 | FALSE | 1.4411929 | ||||||||||||||
| cg16751193 | chr4 | 115101864 |
|
52697921 | TAAAACRCAACAAATAAAAACTACRTCCAATAATACTACCATCTACTAAC | II | NA | NA | NA | NA | NA | NA | OpenSea | GAGCCCTCTTGTGGGACGCAGCAAGTAGGGGCTGCGTCCAATGATGCTGCCATCTGCTGG[CG]TTGACTGCCCCATTTTCTCTGGCATGGAAGCTTCAGACATGTTTCGGAGCCCTGTGATCT | CGCCAGCAGATGGCAGCATCATTGGACGCAGCCCCTACTTGCTGCGTCCC | 4:115101640-115102229 | Unclassified | chr4:115101720-115101950 | 3 | 8.58e-05 | 0.1816602 | 8.58e-05 | 0.1816602 | 0.0497415 | 0.0427429 | 0.0000885 | FALSE | -1.7598564 | ||||||||||||||||||||||||||
| cg09384196 | chr3 | 126946312 |
|
75665136 | CTTTATTACTAAAATTAAACAAACRACTAAATTAACCCCATCAACTTCTC | II | NA | NA | rs732411 | 0.022337 | NA | NA | OpenSea | GTGTGGCTCAGGAAGACGAGGGGATCAGGTTCCCTGTCAAAGGTCCACCTCTGTCTTACA[CG]AGAAGCTGATGGGGTCAATCCAGCCGTCTGTTTAATCCCAGCAACAAAGGTACTCACCAC | CGAGAAGCTGATGGGGTCAATCCAGCCGTCTGTTTAATCCCAGCAACAAA | TRUE | chr3:126945825-126946395 | 3 | 8.59e-05 | 0.1816602 | 8.59e-05 | 0.1816602 | 0.0581437 | 0.0584288 | 0.0001209 | FALSE | -1.1561650 | |||||||||||||||||||||||||||
| cg03331562 | chr2 | 112446299 |
|
30752198 | TCAACRACRAATATACTTTAAAAACTCTCTCACTAATTAATAACAACTAC | II | NA | NA | NA | NA | NA | NA | OpenSea | TTGCATTGTGTGCTGCCTGTGTCTGTGAAGTGCTCTGAACCCTGCCTGGCCCCGAGCGTA[CG]CAGCTGTTACTAACTAGTGAGAGAGCTTCCAAAGCACATCCGCCGCTGATGGAGGCACAA | CGCAGCTGTTACTAACTAGTGAGAGAGCTTCCAAAGCACATCCGCCGCTG | chr2:112445925-112446415 | 3 | 8.60e-05 | 0.1816602 | 8.60e-05 | 0.1816602 | -0.0347006 | 0.0208142 | 0.0000431 | FALSE | 3.8901994 | ||||||||||||||||||||||||||||
| cg06869292 | chr1 | 182038423 |
|
81799534 | AAATTACCTCTATATTCAAACAACCRAACTAAACAACTACRAAAAAAAAC | II | NA | NA | NA | NA | NA | NA | OpenSea | TACATGCGCTGGCCAGGGTACAAGGGGCCTTTTCTTTCCAAGGCCCCCATCAAAACCACA[CG]CCTCTCCTCGCAGCTGTCTAGCTCGGCTGCCTGAACACAGAGGTAATTCACAGGAGATGT | CGCCTCTCCTCGCAGCTGTCTAGCTCGGCTGCCTGAACACAGAGGTAATT | 1:182038145-182038694 | Unclassified_Cell_type_specific | RP11-538D16.2 | ENST00000411509.1 | TSS200 | RP11-538D16.2 | ENST00000411509.1 | TSS200 | chr1:182038021-182038542 | 6 | chr1:182038030-182038753 | 6 | 8.62e-05 | 0.1816602 | 8.62e-05 | 0.1816602 | 0.0735649 | 0.0935906 | 0.0001937 | FALSE | -1.8584950 | ||||||||||||||||||
| cg22508145 | chr19 | 17015427 |
|
18803172 | TAATCAAAAACTATAACCCACCCAATATATAACCTAACATCCCATAAAAC | II | NA | NA | rs773863 | 0.333022 | rs773863 | 0.333022 | OpenSea | AAGGAAAGGAGTGGTCAAGAGCTATAACCCACCCAGTGTGTAGCCTGGCATCCCATGGAG[CG]CATCCAAGCATGGGGTCTAAAGAAAAGGTATTGTGGGACCCCAGTGGGAGAAGAGTATCA | CGCTCCATGGGATGCCAGGCTACACACTGGGTGGGTTATAGCTCTTGACC | CPAMD8 | NM_015692 | Body | CDMR | chr19:17015345-17015755 | 3 | TRUE | 8.62e-05 | 0.1816602 | 8.62e-05 | 0.1816602 | -0.3094826 | 1.6564388 | 0.0034281 | FALSE | 0.1812677 | |||||||||||||||||||||||
| cg13666471 | chr1 | 44249486 |
|
21689122 | AAAAATACCTAAATACAAATCAAAAACAAAACATCCCCTAAAACAACAAC | II | NA | NA | NA | NA | NA | NA | OpenSea | TTAGAGGGCAGCAGCTGGTAGAATTCCAGCTACTCCCAGACTTCCTGATGTCCCTGTGAA[CG]CTGTTGCCCTAGGGGATGTCCTGCCCCTGATCTGCACCCAGGTACCTTTTGTCTCCTGGC | CGCTGTTGCCCTAGGGGATGTCCTGCCCCTGATCTGCACCCAGGTACCTT | ST3GAL3;ST3GAL3;ST3GAL3;ST3GAL3;ST3GAL3;ST3GAL3;ST3GAL3;ST3GAL3;ST3GAL3;ST3GAL3;ST3GAL3;ST3GAL3;ST3GAL3;ST3GAL3;ST3GAL3;ST3GAL3;ST3GAL3;ST3GAL3;ST3GAL3;ST3GAL3;ST3GAL3;ST3GAL3;ST3GAL3;ST3GAL3;ST3GAL3 | NR_073019;NR_073017;NR_073018;NR_073023;NR_073016;NR_073020;NR_073021;NM_001270465;NM_001270463;NM_001270464;NM_001270466;NM_174967;NM_174965;NM_174970;NM_174968;NM_174966;NM_174964;NM_174963;NM_006279;NM_001270459;NM_001270460;NM_001270461;NM_001270462;NM_174971;NM_174969 | Body;Body;Body;Body;Body;Body;Body;Body;Body;Body;Body;Body;Body;Body;Body;Body;Body;Body;Body;Body;Body;Body;Body;Body;Body | TRUE | chr1:44249360-44249690 | 3 | 8.64e-05 | 0.1816602 | 8.64e-05 | 0.1816602 | 0.0774774 | 0.1038522 | 0.0002149 | FALSE | 1.5998212 | ||||||||||||||||||||||||
| cg03119308 | chr7 | 127950724 |
|
8646163 | ACATCAAAAAATAAACCAAAATTCAAATATACACAATCCAAAACACCTCC | II | NA | NA | rs12850 | 0.338126 | rs12850 | 0.338126 | OpenSea | TAACGAACCACACATCAAAGGATGGACCAAAGTTCAGATGTACACAGTCCAGGGCACCTC[CG]AGCACAGTGGCAGTGCCCTTGGGGATTTTCTTTCCCTCAGTGAGAGACACGGGGGATGGG | CGGAGGTGCCCTGGACTGTGTACATCTGAACTTTGGTCCATCCTTTGATG | RBM28;RBM28 | NM_018077;NM_001166135 | 3’UTR;3’UTR | RBM28;RBM28;RBM28 | ENST00000223073.1;ENST00000415472.2;ENST00000481788.1 | 3’UTR;3’UTR;3’UTR | RBM28;RBM28;RBM28 | ENST00000223073.1;ENST00000415472.2;ENST00000481788.1 | 3’UTR;3’UTR;3’UTR | chr7:127950216-127951438 | 6 | TRUE | 8.64e-05 | 0.1816602 | 8.64e-05 | 0.1816602 | -0.2239676 | 0.8678881 | 0.0017961 | FALSE | 0.9962901 | ||||||||||||||||||
| cg14167033 | chr11 | 70424559 |
|
87781381 | ACRAACTCTTAAACCRTACAATACTATAATCCAAAATAAAAAAACTATAC | II | NA | NA | rs11236714 | 0.135369 | rs11236714 | 0.135369 | OpenSea | TGAGGATGGTGATGTTGTTGGCACAGAAGGCGAGGTCTCAGGGGGACAGGCGCATCACGA[CG]CACAGCCTTCCCATCCTGGACCACAGCATTGCACGGCCCAAGAGCTCGTGGCCACGACGG | CGCACAGCCTTCCCATCCTGGACCACAGCATTGCACGGCCCAAGAGCTCG | SHANK2;SHANK2 | NM_012309;NM_133266 | Body;Body | 11:70102177-70102208 | chr11:70424405-70424795 | 3 | TRUE | 8.67e-05 | 0.1816602 | 8.67e-05 | 0.1816602 | 0.1902340 | 0.6265154 | 0.0012966 | FALSE | 2.9459770 | |||||||||||||||||||||||
| cg16232867 | chr10 | 6405534 |
|
81664956 | CAAATCACAACCCCAAAAAATACCTTCAATAATTACCCAAAAAATCAAAC | II | NA | NA | rs11258303 | 0.380893 | NA | NA | OpenSea | ATAGCTTGTGTCAGATCACAGCCCCAAGGAATACCTTCAATGGTTGCCCAGAGGATCAAG[CG]TTAAGTATCTTAGCATGATTTTCAAGGCATTGAGCAATCTGAGACCAATGTACTTTGCTG | CGCTTGATCCTCTGGGCAACCATTGAAGGTATTCCTTGGGGCTGTGATCT | chr10:6405480-6405810 | 3 | 8.70e-05 | 0.1816602 | 8.70e-05 | 0.1816602 | -0.1337035 | 0.3096828 | 0.0006409 | FALSE | 0.3121197 | ||||||||||||||||||||||||||||
| cg11808699 | chr15 | 81528661 |
|
74719264 | TTCTTAACAAATAAAAAACCCAATCTTTTAACTACCTACCTCTTCCTACC | II | rs8034716 | 0.056322 | NA | NA | NA | NA | OpenSea | GGGCCTGGGCCTTCTTGGCAAGTGGGAAACCCAATCTTTTGGCTGCCTGCCTCTTCCTGC[CG]CAGAAGAGCGACTTATGGATGCTGAGAGCAGCCACTGAGAGGGAAGCTTAGGGCTCCATG | CGGCAGGAAGAGGCAGGCAGCCAAAAGATTGGGTTTCCCACTTGCCAAGA | IL16 | NM_172217 | Body | TRUE | chr15:81528420-81528935 | 3 | TRUE | 8.71e-05 | 0.1816602 | 8.71e-05 | 0.1816602 | 0.0621377 | 0.0669077 | 0.0001385 | FALSE | 1.0596860 | |||||||||||||||||||||||
| cg25402687 | chr12 | 114393323 |
|
37711222 | TAACTTAATATCTAACACTAATAAACCCTACATAATAATACTAACACCCC | II | NA | NA | NA | NA | NA | NA | OpenSea | GACAGGGACCCTGGGGCTACAAGGAGGGGCAGGGTGGGAATGTGAAGGAGCCCTGAAGAA[CG]GGGTGTCAGTACCACTATGTAGGGCTTATCAGTGCCAGACACTAAGCCAAGCACTTTACA | CGGGGTGTCAGTACCACTATGTAGGGCTTATCAGTGCCAGACACTAAGCC | RBM19;RBM19;RBM19 | NM_016196;NM_001146698;NM_001146699 | Body;Body;Body | 12:114392326-114393710 | Gene_Associated_Cell_type_specific | chr12:114392909-114393383 | 6 | chr12:114392578-114393873 | 6 | 8.72e-05 | 0.1816602 | 8.72e-05 | 0.1816602 | 0.1478840 | 0.3790192 | 0.0007844 | FALSE | 3.5636103 | |||||||||||||||||||||
| cg12136056 | chr12 | 43686087 |
|
24688974 | CRTTTAAAAATCACAAACTCATTTAACCCATATAACCTAAACTATTTCCC | II | NA | NA | NA | NA | NA | NA | OpenSea | CATATATGATACGTTTGGAAGTCACAAACTCATTTAACCCATGTAGCCTGAGCTGTTTCC[CG]TTTGCTGCACCATATTTTATGAGTAAGGTCCCTGAGAGGAGAAAGAGTTGTGAATGGGGT | CGGGAAACAGCTCAGGCTACATGGGTTAAATGAGTTTGTGACTTCCAAAC | AC079603.1 | ENST00000401174.1 | TSS1500 | AC079603.1 | ENST00000401174.1 | TSS1500 | 8.72e-05 | 0.1816602 | 8.72e-05 | 0.1816602 | -0.0396305 | 0.0272207 | 0.0000563 | FALSE | 2.9366410 | ||||||||||||||||||||||||
| cg20531857 | chr20 | 59270392 |
|
81753493 | CTATAAAACTAACTCAACAATACTAACTCAACCTTCCTAAATAAATAATC | II | NA | NA | NA | NA | NA | NA | OpenSea | CCCCAGCAGATGTGCCCATTCCCCGTGGCTGAATATTGGCCCCTGACAGCTCACAGCCAC[CG]ACTACCCACTCAGGAAGGCTGAGTCAGCACTGCTGAGTCAGCCTCACAGGAGCCTTTTGC | TGTGAGGCTGACTCAGCAGTGCTGACTCAGCCTTCCTGAGTGGGTAGTCG | chr20:59270345-59270610 | 3 | 8.75e-05 | 0.1816602 | 8.75e-05 | 0.1816602 | 0.0625430 | 0.0678481 | 0.0001404 | FALSE | -2.0050537 | ||||||||||||||||||||||||||||
| cg10662975 | chr2 | 109206653 |
|
58751916 | ACATACACACAACATACATCTATATAAAAAACTACCTTACACATACAATC | II | NA | NA | NA | NA | NA | NA | OpenSea | AAATGTATTTGCAAAAGCATTGATTTTACAGTTAACCTTCAAGAACATTAAGAGTGATAC[CG]ATTGCATGTGTAAGGCAGTCTCTTATATAGATGTATGTTGTGTGTATGTACACGTGTGTA | CATACACACAACATACATCTATATAAGAGACTGCCTTACACATGCAATCG | LIMS1;LIMS1;LIMS1 | NM_004987;NM_001193488;NM_001193483 | 5’UTR;5’UTR;Body | chr2:109206329-109206329 | LIMS1;LIMS1 | ENST00000332345.6;ENST00000393310.1 | 5’UTR;5’UTR | LIMS1;LIMS1 | ENST00000332345.6;ENST00000393310.1 | 5’UTR;5’UTR | 8.82e-05 | 0.1816602 | 8.82e-05 | 0.1816602 | -0.0576272 | 0.0576868 | 0.0001194 | FALSE | 1.8979879 | ||||||||||||||||||||
| cg25362630 | chr20 | 42544650 |
|
30768567 | TACCRAATCTAACCCAACCTAAATAAATTAAATACCTCTAAACAATCCRC | II | NA | NA | NA | NA | NA | NA | chr20:42543097-42545137 | Island | TCAGGTCCCACTGCCGGGTCTGGCCCAGCCTGGATGGGTTGGGTGCCTCTAAGCAGTCCG[CG]TCCCCTTCGGTCGCCGGAGAGGGAACTTTCAAACTTAGTTAGGAAGCCAGACTGTCCGCG | CGCGGACTGCTTAGAGGCACCCAACCCATCCAGGCTGGGCCAGACCCGGC | TOX2;TOX2;TOX2 | NM_001098796;NM_001098797;NM_032883 | TSS200;Body;TSS200 | DMR | 20:41976512-41978541 | TOX2;TOX2;TOX2 | ENST00000423191.1;ENST00000372999.1;ENST00000372992.5 | TSS200;TSS200;5’UTR | TOX2;TOX2;TOX2;TOX2 | ENST00000423191.1;ENST00000372999.1;ENST00000372992.5;ENST00000442881.1 | TSS200;TSS200;5’UTR;5’UTR | chr20:42543025-42544790 | 3 | TRUE | 8.85e-05 | 0.1816602 | 8.85e-05 | 0.1816602 | -0.0364750 | 0.0231291 | 0.0000479 | FALSE | -3.5524933 | |||||||||||||||
| cg13554921 | chr2 | 85580804 |
|
40725963 | ACCTATTTAATCTACRAAATCCCTCTCACTTATAAATTTTAAAATTCTCC | II | rs17026277 | 0.025146 | NA | NA | NA | NA | chr2:85581618-85581963 | N_Shore | AGATGATTAGTCCTTCCACTTAGAACAGTACTGTCTCCGATTGTGTAGCAAGATATGACA[CG]GAGAATTCTAAAATTTACAAGTGAGAGGGACTCCGTAGATCAAACAGGTGATCCATTATT | CGGAGAATTCTAAAATTTACAAGTGAGAGGGACTCCGTAGATCAAACAGG | ELMOD3;ELMOD3;ELMOD3;ELMOD3;RETSAT | NM_001135022;NM_001135021;NM_001135023;NM_032213;NM_017750 | TSS1500;TSS1500;TSS1500;TSS1500;Body | ELMOD3;ELMOD3;ELMOD3;ELMOD3;ELMOD3 | ENST00000409013.3;ENST00000490508.1;ENST00000409344.3;ENST00000428955.2;ENST00000315658.7 | TSS1500;TSS1500;TSS1500;TSS1500;TSS1500 | RETSAT;ELMOD3;ELMOD3;ELMOD3;ELMOD3;ELMOD3;ELMOD3;ELMOD3;ELMOD3;ELMOD3;ELMOD3;ELMOD3 | ENST00000490291.1;ENST00000462396.1;ENST00000409331.2;ENST00000490508.1;ENST00000446464.3;ENST00000423095.3;ENST00000409344.3;ENST00000428955.2;ENST00000476734.1;ENST00000466467.1;ENST00000315658.7;ENST00000462891.2 | 3’UTR;TSS1500;TSS1500;TSS1500;TSS1500;TSS1500;TSS1500;TSS1500;TSS1500;TSS1500;TSS1500;TSS1500 | chr2:85580705-85581375 | 3 | 8.90e-05 | 0.1816602 | 8.90e-05 | 0.1816602 | -0.0456770 | 0.0363069 | 0.0000751 | FALSE | 2.8054617 | ||||||||||||||||||
| cg04707327 | chr14 | 50159532 |
|
70770936 | 19601227 | AATATCTTTTCTATAATTAATTTATTCAACACCATAATTCATTATTAACA | AATATCTTTTCTATAATTAATTTATTCAACACCGTAATTCGTTATTAACG | I | C | Grn | NA | NA | NA | NA | NA | NA | chr14:50159667-50160424 | N_Shore | GCACAAGAGAGAAGGGAGAGAAGCTATTCTAGAGTAAAACAGACGTAAAGTCTTAAGAGG[CG]TTAACAACGAATTACGGTGCTGAACAAACCAACTATAGAAAAGACATTTTGAGATAATCA | AATGTCTTTTCTATAGTTGGTTTGTTCAGCACCGTAATTCGTTGTTAACG | KLHDC1 | NM_172193 | TSS1500 | 14:50158961-50160437 | Promoter_Associated | KLHDC1 | ENST00000359332.2 | TSS1500 | KLHDC1;KLHDC1;KLHDC1 | ENST00000556392.1;ENST00000553274.1;ENST00000557128.1 | TSS1500;TSS1500;TSS1500 | chr14:50159400-50160410 | 3 | TRUE | 8.92e-05 | 0.1816602 | 8.92e-05 | 0.1816602 | 0.0417304 | 0.0303147 | 0.0000627 | FALSE | -2.6187504 | |||||||||||
| cg09167828 | chr2 | 11286089 |
|
11803236 | TTTAAATTTATTTTCTCAACAACCCAAAAAAATCAACAAACAAAAATTTC | II | NA | NA | rs11903207 | 0.213620 | rs11903207 | 0.213620 | OpenSea | GGGTAAAGCATTTTAAATTTATTTTCTCAACAACCCAAGAGAATCAACAGGCAGGGATTT[CG]TATTCATTTAATACAGGCAAAACCTGAGATTCAGAGAGGTGAAATAAAATCCCGAACATA | CGAAATCCCTGCCTGTTGATTCTCTTGGGTTGTTGAGAAAATAAATTTAA | C2orf50 | NM_182500 | 3’UTR | C2orf50;C2orf50 | ENST00000381585.3;ENST00000405022.3 | 3’UTR;3’UTR | C2orf50;C2orf50 | ENST00000381585.3;ENST00000405022.3 | 3’UTR;3’UTR | TRUE | 8.94e-05 | 0.1816602 | 8.94e-05 | 0.1816602 | 0.1602441 | 0.4472289 | 0.0009256 | FALSE | 2.7988766 | ||||||||||||||||||||
| cg27123423 | chr17 | 62971335 |
|
39740849 | CCACAATACRAATTACTATAAACAACCAACTAAAATAACCAACTTCTCCC | II | NA | NA | NA | NA | NA | NA | chr17:62971515-62972293 | N_Shore | CTGTGGTGGGCTGGAGGCCTGGGACGCTGTGGTCCCAAAACCAGAACATCTCGGGCCAAC[CG]GGAGAAGTTGGCCACCCTAGCTGGTTGCCTACAGCAACTCGCACTGTGGGCTCTGGTCCG | CGGGAGAAGTTGGCCACCCTAGCTGGTTGCCTACAGCAACTCGCACTGTG | FLJ32065 | NR_026903 | Body | 17:62971185-62972448 | Promoter_Associated | AMZ2P1;AMZ2P1 | ENST00000430983.1;ENST00000430983.1 | 1stExon;3’UTR | AMZ2P1;AMZ2P1;AMZ2P1;AMZ2P1 | ENST00000397713.1;ENST00000430983.1;ENST00000397713.1;ENST00000430983.1 | 3’UTR;1stExon;1stExon;3’UTR | chr17:62971325-62972355 | 3 | TRUE | 8.94e-05 | 0.1816602 | 8.94e-05 | 0.1816602 | 0.0667951 | 0.0777113 | 0.0001608 | FALSE | -3.0142535 | |||||||||||||||
| cg15474318 | chr13 | 114830713 |
|
88647240 | ATTTTCTTATAATCACRTAATAAAAACAACCRCAAACRAAATAAAACAAC | II | NA | NA | NA | NA | NA | NA | OpenSea | AGCAGAGAAACCCCCGCCTTCTCCTCCCTGAGTCACTTCCCAGCATCTGCGCAAGGCTGG[CG]CTGCCCCATCCCGCCTGCGGCTGCTCCCATCACGTGATCATAAGAAAATAAACCTGGTTT | TTTTCTTATGATCACGTGATGGGAGCAGCCGCAGGCGGGATGGGGCAGCG | RASA3 | NM_007368 | Body | chr13:114830489-114830489 | RDMR | TRUE | 13:114830702-114831785 | Promoter_Associated | chr13:114830525-114831095 | 3 | TRUE | 8.96e-05 | 0.1816602 | 8.96e-05 | 0.1816602 | 0.0511941 | 0.0456730 | 0.0000945 | FALSE | -1.9777155 | |||||||||||||||||||
| cg13123656 | chr10 | 60144124 |
|
25794193 | ATTTCAAAACTAACCACCTTCTAAAACAACCTTTCTTCTATTAAATAACC | II | NA | NA | NA | NA | NA | NA | chr10:60144723-60145335 | N_Shore | ACAGAAAGGTAAATAGACTGTCAGCTCAATATGACACTGGTAAGAATTTTCTAACAATTA[CG]GCTATCCAACAGAAGAAAGGCTGTCTCAGAAGGTGGTTAGCTCTGAAACAACTGGTATTT | CGGCTATCCAACAGAAGAAAGGCTGTCTCAGAAGGTGGTTAGCTCTGAAA | TFAM;TFAM;TFAM | NM_003201;NM_001270782;NR_073073 | TSS1500;TSS1500;TSS1500 | 10:60143902-60145863 | Promoter_Associated | TFAM;TFAM;TFAM | ENST00000487519.1;ENST00000373899.3;ENST00000373895.3 | TSS1500;TSS1500;TSS1500 | TFAM;TFAM;TFAM;TFAM | ENST00000487519.1;ENST00000373899.3;ENST00000373895.3;ENST00000395377.2 | TSS1500;TSS1500;TSS1500;TSS1500 | chr10:60143900-60144135 | 3 | 8.97e-05 | 0.1816602 | 8.97e-05 | 0.1816602 | 0.0697549 | 0.0848000 | 0.0001755 | FALSE | -3.3922418 | ||||||||||||||||
| cg26931154 | chr3 | 87347249 |
|
13686124 | TTCTTATACCTAAAATCAACTCCTCATTAAAAACTTTTACTATTACAAAC | II | NA | NA | NA | NA | NA | NA | OpenSea | ATTAAAAGCAATTCTTGTACCTAAAGTCAACTCCTCATTAGAAACTTTTGCTATTACAAA[CG]TTTTCCAGGTCTTGGATGGACACTTTTACTGCATTTTTAAATGAATTTTTAAAAAGTAAA | CGTTTGTAATAGCAAAAGTTTCTAATGAGGAGTTGACTTTAGGTACAAGA | 3:87347239-87347630 | Unclassified_Cell_type_specific | chr3:87347115-87347708 | 6 | chr3:87346937-87347853 | 6 | 9.01e-05 | 0.1816602 | 9.01e-05 | 0.1816602 | 0.0564958 | 0.0556740 | 0.0001152 | FALSE | -1.8038934 | ||||||||||||||||||||||||
| cg27376282 | chr4 | 167893358 |
|
8766400 | TCATACTTATATAACAAACACTTCTAAAACTACTAAAAACTTTCTCTTTC | II | NA | NA | NA | NA | NA | NA | OpenSea | GATAATACAACAAGCTGGAAATTCTTCAAAACTAGCAGATTGATAGCACAAATTACTCAG[CG]AAAGAGAAAGCCTTCAGCAGCTTCAGAAGTGCTTGCTACATAAGCATGATTAAGTGTTTC | CATGCTTATGTAGCAAGCACTTCTGAAGCTGCTGAAGGCTTTCTCTTTCG | SPOCK3;SPOCK3;SPOCK3;SPOCK3;SPOCK3;SPOCK3;SPOCK3;SPOCK3;SPOCK3 | NM_001204353;NM_001204354;NM_001204352;NM_001204355;NM_001204356;NM_016950;NM_001040159;NM_001251967;NM_001204358 | 5’UTR;Body;Body;Body;Body;Body;Body;Body;Body | SPOCK3;SPOCK3 | ENST00000541354.1;ENST00000507137.1 | 5’UTR;3’UTR | SPOCK3;SPOCK3;SPOCK3;SPOCK3;SPOCK3 | ENST00000515316.1;ENST00000541354.1;ENST00000507137.1;ENST00000502821.1;ENST00000505187.1 | 3’UTR;5’UTR;3’UTR;3’UTR;3’UTR | chr4:167893225-167893550 | 3 | 9.01e-05 | 0.1816602 | 9.01e-05 | 0.1816602 | 0.0472306 | 0.0389105 | 0.0000805 | FALSE | -0.9194424 | |||||||||||||||||||
| cg14976741 | chr12 | 4872921 |
|
79730458 | 6633435 | TTTTCTAAACACTAAAAAACAAACCAACACCAAAAAAAAACACTACTACA | TTTTCTAAACACTAAAAAACAAACCAACGCCGAAAAAAAACGCTACTACG | I | C | Grn | NA | NA | NA | NA | NA | NA | OpenSea | GCCCCTCCCTGTGTGTGTGGTGATGGGCTGAGGTGATGGGTGTTTCCCGGATGTGGGCAG[CG]CAGCAGCGCCTCCCTTCGGCGCTGGTCTGTTTCCCAGTGCTTAGAAAATGCCTGCCGGGA | TTTTCTAAGCACTGGGAAACAGACCAGCGCCGAAGGGAGGCGCTGCTGCG | GALNT8 | NM_017417 | Body | TRUE | 12:4742910-4743204 | GALNT8 | ENST00000535354.1 | TSS1500 | chr12:4872645-4873115 | 3 | TRUE | 9.01e-05 | 0.1816602 | 9.01e-05 | 0.1816602 | 0.0469789 | 0.0384994 | 0.0000797 | FALSE | 0.8863038 | |||||||||||||||
| cg13378519 | chr1 | 145516269 |
|
77704458 | AATACACAAATAAAAACTCAAAAAACACRAATTTCRCRTCCTAAAATTCC | II | NA | NA | NA | NA | NA | NA | chr1:145516038-145516637 | Island | ACACGCACAGTAATACACAGATGGAGGCTCAAAAGACACGAGTTTCGCGTCCTGAAATTC[CG]CTTCCAGGGCCAAGCTTTCTTTTCTGATACTGTTTGTCCCTCGCGAGGCACCGTTGGGTC | ATACACAGATGGAGGCTCAAAAGACACGAGTTTCGCGTCCTGAAATTCCG | GNRHR2;PEX11B | NR_002328;NM_003846 | TSS200;TSS200 | 1:144227125-144228117 | 1:145515626-145517107 | Promoter_Associated | PEX11B;GNRHR2;GNRHR2;GNRHR2;PEX11B;PEX11B | ENST00000537888.1;ENST00000361928.2;ENST00000312753.5;ENST00000469718.1;ENST00000369306.3;ENST00000369306.3 | TSS1500;TSS1500;TSS200;TSS1500;5’UTR;1stExon | PEX11B;GNRHR2;GNRHR2;GNRHR2;PEX11B;PEX11B | ENST00000537888.1;ENST00000361928.2;ENST00000312753.5;ENST00000469718.1;ENST00000369306.3;ENST00000369306.3 | TSS1500;TSS1500;TSS200;TSS1500;5’UTR;1stExon | chr1:145515985-145517035 | 3 | TRUE | 9.03e-05 | 0.1816602 | 9.03e-05 | 0.1816602 | 0.0345228 | 0.0207978 | 0.0000430 | FALSE | -5.1462751 | ||||||||||||||
| cg05886630 | chr4 | 185737842 |
|
21796939 | CTATATTTTATATACCCRTAACTCCAACTTCAACTTCAATAATAATCAAC | II | NA | NA | rs9997745 | 0.248633 | rs9997745 | 0.248633 | OpenSea | GTATAATAAAACTATATTTTATGTACCCGTGACTCCAACTTCAGCTTCAGTAATGATCAA[CG]TTTTGCTGTTTCATTATACCCACTTCTTAAAAAATTACTTTAAGTTACATCCCAACACCC | CGTTGATCATTACTGAAGCTGAAGTTGGAGTCACGGGTACATAAAATATA | ACSL1;ACSL1 | NM_001286711;NM_001995 | 5’UTR;5’UTR | ACSL1;ACSL1;ACSL1;ACSL1;ACSL1;ACSL1 | ENST00000509038.1;ENST00000454703.2;ENST00000507295.1;ENST00000504900.1;ENST00000281455.2;ENST00000515030.1 | 3’UTR;5’UTR;5’UTR;5’UTR;5’UTR;5’UTR | ACSL1;ACSL1;ACSL1;ACSL1;ACSL1;ACSL1 | ENST00000509038.1;ENST00000454703.2;ENST00000507295.1;ENST00000504900.1;ENST00000281455.2;ENST00000515030.1 | 3’UTR;5’UTR;5’UTR;5’UTR;5’UTR;5’UTR | chr4:185737827-185739918 | 6 | 9.03e-05 | 0.1816602 | 9.03e-05 | 0.1816602 | -0.1274002 | 0.2832476 | 0.0005862 | FALSE | 1.8633523 | |||||||||||||||||||
| cg09240045 | chr1 | 30881227 |
|
63780870 | CTATTTCACTAATAACACAAATTCCCATATACAATAATACATATACCCTC | II | rs602080 | 0.071331 | NA | NA | NA | NA | OpenSea | CAAAGGCCATCTGGCCAGGCTGCATCAGGGATACCTGGGCACCGGGATTACCTGTGTCCA[CG]AGGGCACATGCATCACTGCACATGGGAATTTGTGTCATCAGTGAAACAGGAGTGCATTCT | CGAGGGCACATGCATCACTGCACATGGGAATTTGTGTCATCAGTGAAACA | chr1:30881005-30881395 | 3 | 9.03e-05 | 0.1816602 | 9.03e-05 | 0.1816602 | 0.0444955 | 0.0345552 | 0.0000715 | FALSE | 1.6720826 | ||||||||||||||||||||||||||||
| cg03485803 | chr4 | 100792483 |
|
29638284 | ACTCTACTTAACATCATAATCAAACAACCTAAATTCATAAAAAACAAACC | II | NA | NA | rs6829912 | 0.295059 | rs6829912 | 0.295059 | OpenSea | GTTTCTACCAGACTCTTCCTAGCCAAGTATACTACACAGCAGAGTGCCAGGCTGAGCCTA[CG]GTCTGCTCTCTATGAATTCAGGCTGTCTGACCATGATGTCAAGCAGAGTTTCTTAAACCA | CGGTCTGCTCTCTATGAATTCAGGCTGTCTGACCATGATGTCAAGCAGAG | chr4:100791499-100793716 | 6 | 9.07e-05 | 0.1816602 | 9.07e-05 | 0.1816602 | -0.1258116 | 0.2764681 | 0.0005722 | FALSE | 2.1409081 | ||||||||||||||||||||||||||||
| cg02300027 | chr4 | 177711356 |
|
58713586 | CTAAATTCCATAAACCACAAAACAATATTTCATTACTCCATTAAAATATC | II | NA | NA | NA | NA | NA | NA | chr4:177713243-177714457 | N_Shore | GTTTCACTGAATGCATTAATGACACATGCCCTGTCAAGGCTCTATTCACCCACTGGGGAA[CG]ACACTTTAATGGAGCAATGAAATACTGCTTTGTGGTCTATGGAACTCAGAGATGATGTTT | CGACACTTTAATGGAGCAATGAAATACTGCTTTGTGGTCTATGGAACTCA | VEGFC | NM_005429 | Body | chr4:177710943-177710943 | chr4:177711140-177711455 | 3 | 9.12e-05 | 0.1816602 | 9.12e-05 | 0.1816602 | 0.0654746 | 0.0749664 | 0.0001551 | FALSE | -2.9831443 | |||||||||||||||||||||||
| cg08990198 | chr1 | 202318195 |
|
7658257 | ACRTTAACCRTATTAATATCAACACCTCTTACCAAAAACTTTCTCACCTC | II | NA | NA | NA | NA | NA | NA | chr1:202317657-202318196 | Island | CAGGGTCCGCTTCGAGGACGGTGCTGTCTTTCTGGCCGCCTGCTCTAGCGGGGACACCGA[CG]AGGTGAGAAAGCTTCTGGCAAGAGGTGCTGATATCAACACGGTCAACGTGGACGGCTTGA | CGTTGACCGTGTTGATATCAGCACCTCTTGCCAGAAGCTTTCTCACCTCG | PPP1R12B;PPP1R12B;PPP1R12B;PPP1R12B | NM_001167857;NM_032105;NM_001167858;NM_002481 | 1stExon;1stExon;1stExon;1stExon | 1:200584281-200584920 | 1:202317357-202318944 | Promoter_Associated | PPP1R12B;PPP1R12B;PPP1R12B;PPP1R12B | ENST00000406302.3;ENST00000336894.4;ENST00000480184.1;ENST00000356764.2 | 1stExon;1stExon;1stExon;1stExon | PPP1R12B;PPP1R12B;PPP1R12B;PPP1R12B | ENST00000406302.3;ENST00000336894.4;ENST00000480184.1;ENST00000356764.2 | 1stExon;1stExon;1stExon;1stExon | chr1:202317980-202318690 | 3 | TRUE | 9.13e-05 | 0.1816602 | 9.13e-05 | 0.1816602 | 0.0355245 | 0.0220712 | 0.0000457 | FALSE | -4.2029042 | ||||||||||||||
| cg19956889 | chr10 | 11650681 |
|
77757977 | TACCTTCTATATACCCCAAAACTTTATATTAAATACTTTATTTTCAACAC | II | NA | NA | NA | NA | NA | NA | chr10:11652834-11653962 | N_Shelf | TAGGTTCCCTAGGTATGGGTTTTATAGCTCCCTGTACTTCACATCAAAGGACTCATCCCA[CG]TGTTGAAAACAAAGTACCTAACACAAAGTCCTGGGGTACACAGAAGGCACTCAAAAAATA | GCCTTCTGTGTACCCCAGGACTTTGTGTTAGGTACTTTGTTTTCAACACG | USP6NL | NM_014688 | 5’UTR | USP6NL;USP6NL | ENST00000535316.1;ENST00000379237.1 | 5’UTR;5’UTR | USP6NL;USP6NL | ENST00000535316.1;ENST00000379237.1 | 5’UTR;5’UTR | chr10:11650245-11650870 | 3 | TRUE | 9.14e-05 | 0.1816602 | 9.14e-05 | 0.1816602 | -0.0417891 | 0.0305523 | 0.0000632 | FALSE | 2.2557766 | |||||||||||||||||
| cg20935784 | chr13 | 19919283 |
|
84712919 | CACAACCTTTTCTTTCRAAATCCCAAAATACCTATAAACAAACAACTCCC | II | NA | NA | rs9551368 | 0.206865 | NA | NA | chr13:19918585-19919221 | S_Shore | CTGTCTGCATGAGTGAGCATATGGGTGTTTTTGAGTCTGTGGGTGTCACAGAGAGGAGAT[CG]GGAGCTGCCTGCTCACAGGCACTTTGGGACCCCGAAAGAAAAGGCTGTGCCGAGAGAGTT | CGGGAGCTGCCTGCTCACAGGCACTTTGGGACCCCGAAAGAAAAGGCTGT | LOC100101938 | NR_027248 | TSS200 | LINC00421;LINC00421 | ENST00000413833.1;ENST00000413833.1 | 1stExon;5’UTR | LINC00421;LINC00421 | ENST00000413833.1;ENST00000413833.1 | 1stExon;5’UTR | chr13:19918525-19919295 | 3 | TRUE | 9.18e-05 | 0.1816602 | 9.18e-05 | 0.1816602 | -0.0871343 | 0.1329284 | 0.0002751 | FALSE | -0.0164583 | |||||||||||||||||
| cg00803088 | chr10 | 43600706 |
|
85618423 | 57809264 | AACACAAATAATCAACCACACAATTAAATAACTACACAAACACTAAACCA | AACGCGAATAATCGACCACACGATTAAATAACTACACGAACACTAAACCG | I | A | Red | NA | NA | NA | NA | NA | NA | chr10:43600146-43601165 | Island | TTGTCCGCGCGTGCTGTGGTCTACCCAGTGTCTGTCTCCGGCCACAGTTCGTTTCTCGGT[CG]GTTTAGTGTCCGTGTAGCCACCCAACCGTGTGGCCGACCATTCGCGCTTTCATTTGTCCT | CGGTTTAGTGTCCGTGTAGCCACCCAACCGTGTGGCCGACCATTCGCGCT | RET;RET | NM_020630;NM_020975 | Body;Body | DMR | TRUE | 10:42920212-42921157 | 10:43600142-43601747 | Unclassified | RET | ENST00000479913.1 | 5’UTR | chr10:43600040-43601195 | 3 | TRUE | 9.27e-05 | 0.1816602 | 9.27e-05 | 0.1816602 | 0.0889888 | 0.1389075 | 0.0002875 | FALSE | -4.9490211 | |||||||||||
| cg27128560 | chr10 | 105815443 |
|
93634402 | TTCTTTACATCTATATAATATATATACATATACTATAAACACCATCATCC | II | rs805694 | 0.289113 | NA | NA | NA | NA | OpenSea | TCCCACCTACCTCTCAGCGCTATTGAGAGGATCAGGGGAGGAGAGAGGCCGAGAGTGGGC[CG]GATGATGGTGCTCACAGCACATGCACACATACCACATAGATGCAAAGAAGAAAGGGACTC | TCTTTGCATCTATGTGGTATGTGTGCATGTGCTGTGAGCACCATCATCCG | COL17A1 | NM_000494 | Body | TRUE | COL17A1 | ENST00000480127.1 | 3’UTR | COL17A1 | ENST00000480127.1 | 3’UTR | chr10:105815420-105815715 | 3 | TRUE | 9.27e-05 | 0.1816602 | 9.27e-05 | 0.1816602 | 0.1182472 | 0.2452817 | 0.0005076 | FALSE | 1.4962481 | |||||||||||||||||
| cg06675877 | chr1 | 156863123 |
|
39705161 | AAAATCTTAATAAAATCACRATTACTAAACAACACTAAACAATACCCRAC | II | NA | NA | NA | NA | NA | NA | chr1:156863415-156863711 | N_Shore | GGTGCCCGGGAGGGGTCTTAATAAGATCACGGTTGCTGGGCAGCACTGGACAGTGCCCGA[CG]TAGGCGATCTCATTGATTCCTTCCCACAACCCCACTTTGCAGATAGGAAAGCTGAGGCAC | CGTCGGGCACTGTCCAGTGCTGCCCAGCAACCGTGATCTTATTAAGACCC | PEAR1 | NM_001080471 | TSS1500 | 1:155129653-155130239 | PEAR1;PEAR1 | ENST00000338302.3;ENST00000292357.7 | TSS1500;TSS1500 | PEAR1;PEAR1;PEAR1;PEAR1 | ENST00000444016.1;ENST00000338302.3;ENST00000455314.1;ENST00000292357.7 | TSS1500;TSS1500;TSS1500;TSS1500 | chr1:156862900-156863155 | 3 | 9.32e-05 | 0.1816602 | 9.32e-05 | 0.1816602 | 0.0561853 | 0.0554354 | 0.0001147 | FALSE | -1.8683005 | |||||||||||||||||
| cg14456004 | chr13 | 21872349 |
|
44705985 | 54801906 | AATATCCCACAAAAATCCTTTCCTCCACCATAAAAACCCTATCCTAAACA | AATATCCCGCAAAAATCCTTTCCTCCACCGTAAAAACCCTATCCTAAACG | I | T | Red | rs4638420 | 0.202878 | NA | NA | rs4638420 | 0.202878 | chr13:21872179-21872665 | Island | GGGGCAGCGTGGGCCGCTGCCTTGGAAACGCAGAGCGCGCGCTCCAGGTAAAGGCTGCTA[CG]CCCAGGACAGGGTTCTCACGGTGGAGGAAAGGACTTCTGCGGGATACCACGCTGTGCGCC | CGCCCAGGACAGGGTTCTCACGGTGGAGGAAAGGACTTCTGCGGGATACC | 13:20770180-20770868 | 13:21870878-21873080 | Promoter_Associated | LINC00539 | ENST00000424756.1 | 5’UTR | LINC00539 | ENST00000424756.1 | 5’UTR | chr13:21872060-21873035 | 3 | TRUE | 9.35e-05 | 0.1816602 | 9.35e-05 | 0.1816602 | 0.1772237 | 0.5519183 | 0.0011422 | FALSE | -3.7966244 | |||||||||||||
| cg02017282 | chr17 | 44896923 |
|
99728358 | AAACRTAACCCACAACCTCAATAAAATTCTCRATTAAACCATCAAAAACC | II | NA | NA | NA | NA | NA | NA | chr17:44895800-44897025 | Island | GCCCGGGTCGGAGGCGTGACCCACAGCCTCAGTGGGATTCTCGGTTGGACCATCAGGGAC[CG]GTGAAACGCGCAGCTCTGGCCGAGGGCGGCCCAGGTCCTTGGAAGACCTTGCTGCCCTCC | CGGTCCCTGATGGTCCAACCGAGAATCCCACTGAGGCTGTGGGTCACGCC | WNT3 | NM_030753 | TSS1500 | DMR | TRUE | 17:42250833-42252083 | WNT3 | ENST00000225512.5 | TSS1500 | WNT3;WNT3 | ENST00000225512.5;ENST00000573788.1 | TSS1500;3’UTR | chr17:44896845-44897775 | 3 | TRUE | 9.35e-05 | 0.1816602 | 9.35e-05 | 0.1816602 | 0.0433466 | 0.0330182 | 0.0000683 | FALSE | -3.8546227 | ||||||||||||||
| cg04103706 | chr3 | 188514728 |
|
58617237 | AATCTTCAAAATATCCTTCTAATTAAACCAAATATCTTATTCTTCATCCC | II | NA | NA | rs77679399 | 0.031684 | rs77679399 | 0.031684 | OpenSea | CCCTTCTTCACAATCTTCAAAATATCCTTCTGATTGAACCAGATATCTTATTCTTCATCC[CG]TTTCCTGCCCCCTAAAATGACCTATCTTTCCCTTCTAAAACTTCCACTAACTTTAAAATT | CGGGATGAAGAATAAGATATCTGGTTCAATCAGAAGGATATTTTGAAGAT | LPP;LPP;LPP | NM_005578;NM_001167671;NM_001167672 | Body;Body;Body | TRUE | LPP | ENST00000459897.1 | 5’UTR | TRUE | 9.37e-05 | 0.1816602 | 9.37e-05 | 0.1816602 | -0.1319959 | 0.3062962 | 0.0006339 | FALSE | 3.2278773 | ||||||||||||||||||||||
| cg01400040 | chr15 | 61091220 |
|
46756145 | ATAACRTAAACTAATTATTCATACTCACAATAAAAACCTTAAATCATACC | II | NA | NA | NA | NA | NA | NA | OpenSea | GACAGTGTATTATGGCGTGGGCTGATTATTCATGCTCACAATGAGAACCTTGAGTCATGC[CG]AGAGGGCTGACATATAGCTGTGTCCTCAGTGAGAGGGCAGGGACCTTCCCTTTAACCTAC | CGGCATGACTCAAGGTTCTCATTGTGAGCATGAATAATCAGCCCACGCCA | RORA | NM_134261 | Body | chr15:61091060-61091060 | TRUE | RORA;RORA;RORA | ENST00000557822.1;ENST00000559145.1;ENST00000561093.1 | 3’UTR;3’UTR;3’UTR | chr15:61091020-61091350 | 3 | TRUE | 9.37e-05 | 0.1816602 | 9.37e-05 | 0.1816602 | -0.0428154 | 0.0322298 | 0.0000667 | FALSE | 2.6871944 | |||||||||||||||||||
| cg04172426 | chr22 | 17653367 |
|
96759270 | AACTATTAACTAAAAAACCTAAACAAATTCAAAACCAACAACTCRACCCC | II | NA | NA | rs8139868 | 0.230594 | NA | NA | chr22:17652263-17652978 | S_Shore | GCGGAGGAAGAGGCTATTGGCTAAAAAGCCTGGACAAATTCAAAACCAGCAGCTCGGCCC[CG]GTTTTTTCGGAGCACAGCCAAACCCAAATCACACCTCTGCACCTACCTAGCTCCAGAGAT | CGGGGCCGAGCTGCTGGTTTTGAATTTGTCCAGGCTTTTTAGCCAATAGC | TRUE | 22:17651913-17653515 | Promoter_Associated | chr22:17653045-17653615 | 3 | TRUE | 9.40e-05 | 0.1816602 | 9.40e-05 | 0.1816602 | 0.1042731 | 0.1912799 | 0.0003959 | FALSE | 0.3848235 | |||||||||||||||||||||||
| cg09980522 | chr11 | 105481802 |
|
3656825 | TATTATTTTCTAAATTTTAAAAACTCRCCATAAAAACCTTTCCRAACAAC | II | NA | NA | NA | NA | NA | NA | chr11:105481126-105481422 | S_Shore | ACAGATTGTCTTGTTATTTTCTGGATTTTGGGGACTCGCCATGGGAGCCTTTCCGAGCAG[CG]TGCAAATAGGTAAGGTGTGCTCCGATGGGGTGTGCATGTGGCTGGTTGTAGCAGATATCC | CGCTGCTCGGAAAGGCTCCCATGGCGAGTCCCCAAAATCCAGAAAATAAC | GRIA4;GRIA4;GRIA4;GRIA4 | NM_001077243;NM_001077244;NM_001112812;NM_000829 | Body;Body;1stExon;Body | 11:104986988-104987231 | GRIA4;GRIA4;GRIA4;GRIA4;GRIA4 | ENST00000428631.2;ENST00000525187.1;ENST00000539249.1;ENST00000393125.2;ENST00000539249.1 | 1stExon;1stExon;1stExon;ExonBnd;5’UTR | GRIA4;GRIA4;GRIA4;GRIA4;GRIA4;GRIA4;GRIA4;GRIA4 | ENST00000525032.1;ENST00000428631.2;ENST00000531011.1;ENST00000525187.1;ENST00000539249.1;ENST00000527177.1;ENST00000525032.1;ENST00000539249.1 | 1stExon;1stExon;1stExon;1stExon;1stExon;ExonBnd;5’UTR;5’UTR | chr11:105481725-105482115 | 3 | TRUE | TRUE | 9.41e-05 | 0.1816602 | 9.41e-05 | 0.1816602 | 0.0381694 | 0.0256362 | 0.0000531 | FALSE | -4.0265506 | |||||||||||||||
| cg12322605 | chr15 | 22904503 |
|
19766967 | AATTATAAATCAAATCCTTAAAATAAATCTCTCTAAACRCACATCCACAC | II | NA | NA | rs35090384 | 0.314612 | rs35090384 | 0.314612 | OpenSea | GGAGGTGGTAGAGGTGATGTATTAGTCAGGGTTCTCCAGAGAAACAGAAGCAGCAGGATA[CG]TGTGGATGTGCGTCTAGAGAGATTTATTTTAAGGATCTGACTCACAATTGTAGAGGCTGG | CGTGTGGATGTGCGTCTAGAGAGATTTATTTTAAGGATCTGACTCACAAT | CYFIP1;CYFIP1 | NM_014608;NM_001287810 | 5’UTR;5’UTR | CYFIP1;CYFIP1 | ENST00000313077.7;ENST00000560848.1 | 5’UTR;5’UTR | CYFIP1;CYFIP1;CYFIP1;CYFIP1;CYFIP1 | ENST00000561185.1;ENST00000313077.7;ENST00000561274.1;ENST00000560848.1;ENST00000558430.1 | 5’UTR;5’UTR;5’UTR;5’UTR;5’UTR | chr15:22904045-22904655 | 3 | 9.42e-05 | 0.1816602 | 9.42e-05 | 0.1816602 | 0.1106453 | 0.2154542 | 0.0004459 | FALSE | 0.9755242 | |||||||||||||||||||
| cg25340050 | chr5 | 140562562 |
|
30688836 | AATCCAAAACATAATTCAAAAAAAACTCAATTCCTAAAAAACTATTTTCC | II | NA | NA | NA | NA | NA | NA | chr5:140563510-140564361 | N_Shore | TGATAGATATAAATGACCATTCTCCCATGTTCACTGAAAAGGAAATGATTCTAAAAATAC[CG]GAAAACAGTCCTCTAGGAACTGAGTTCCCTCTGAATCATGCTTTGGACTTGGACGTAGGA | CGGAAAACAGTCCTCTAGGAACTGAGTTCCCTCTGAATCATGCTTTGGAC | PCDHB16 | NM_020957 | 1stExon | RDMR | PCDHB16 | ENST00000361016.2 | 1stExon | PCDHB16 | ENST00000361016.2 | 1stExon | chr5:140562165-140562815 | 3 | TRUE | 9.43e-05 | 0.1816602 | 9.43e-05 | 0.1816602 | 0.0534123 | 0.0502127 | 0.0001039 | FALSE | 0.5851439 | ||||||||||||||||
| cg11072540 | chr15 | 47566294 |
|
95771463 | ACATACTAAACAACCCACAAAACCCCCATTATTACTATATAAACAACTCC | II | NA | NA | NA | NA | NA | NA | OpenSea | AGAAACACAGCACATGCTGAGCAGCCCACAAAGCCCCCATTATTGCTGTGTGGGCAACTC[CG]TTTGCATCTCATTGAAAATGTTGTCTTGCACATCAACATACGCAATTAAAAAATAAAAGA | CGGAGTTGCCCACACAGCAATAATGGGGGCTTTGTGGGCTGCTCAGCATG | SEMA6D | NM_001198999 | 5’UTR | TRUE | RP11-408J6.1;SEMA6D | ENST00000561254.1;ENST00000558014.1 | TSS200;5’UTR | RP11-408J6.1;SEMA6D;SEMA6D | ENST00000561254.1;ENST00000558014.1;ENST00000559184.1 | TSS200;5’UTR;5’UTR | chr15:47566140-47566390 | 3 | 9.46e-05 | 0.1816602 | 9.46e-05 | 0.1816602 | 0.0445402 | 0.0349392 | 0.0000723 | FALSE | 0.5244775 | ||||||||||||||||||
| cg12863549 | chr10 | 84973246 |
|
96720201 | TTCCCCATACTTTCTATAATACAAACCTATAAACCTACCTAAAATACATC | II | rs41493847 | 0.020291 | NA | NA | NA | NA | OpenSea | CTTAGACATAATTCCCCATGCTTTCTATAATGCAAACCTGTGAACCTACCTAGAATGCAT[CG]CACCGGGAGTCTACACTTGGGTCAAAGAGAAGTAGTGATTGGTTAGTTTTAAGGGTCAAT | TCCCCATGCTTTCTATAATGCAAACCTGTGAACCTACCTAGAATGCATCG | chr10:84972499-84973318 | 4 | 9.46e-05 | 0.1816602 | 9.46e-05 | 0.1816602 | -0.1087921 | 0.2084759 | 0.0004314 | FALSE | 3.2041902 | ||||||||||||||||||||||||||||
| cg06905679 | chr1 | 54008126 |
|
38706850 | AAACTCATTTATTTATTACTTAATTCTTTCATTCATTAACAAATATTCAC | II | NA | NA | NA | NA | NA | NA | OpenSea | GTTTCCGCCATAAACCCATCGGAGAGTGCCCAGCACAGGGGCTGGCACAGAGCGGGTGTT[CG]TGAACATCTGTTAATGAATGAAAGAACCAAGCAACAAACAAATGAGCCTTGAGGGAAGTG | CGTGAACATCTGTTAATGAATGAAAGAACCAAGCAACAAACAAATGAGCC | GLIS1 | NM_147193 | Body | TRUE | chr1:54007525-54008375 | 3 | TRUE | 9.48e-05 | 0.1816602 | 9.48e-05 | 0.1816602 | -0.0633745 | 0.0707748 | 0.0001465 | FALSE | 2.5487477 | |||||||||||||||||||||||
| cg10599438 | chr19 | 844589 |
|
58752177 | 26683280 | AAAAACTATAACTATCCTCACCACTTCCAATAAAATCAAAAAAAACACCA | AAAAACTATAACTATCCTCGCCACTTCCAATAAAATCAAAAAAAACGCCG | I | A | Red | NA | NA | NA | NA | NA | NA | chr19:846011-846435 | N_Shore | CTGCCTGCGCCTCCGCCCGGTGTGCTGTTCCCCCAGAAAGCCAGGTGCCCTCGCCTCCTC[CG]GCGCCTCCCCTGACCTCACTGGAAGTGGCGAGGACAGCCACAGCCCTCCCCGATTCACTG | CGGCGCCTCCCCTGACCTCACTGGAAGTGGCGAGGACAGCCACAGCCCTC | PRTN3 | NM_002777 | Body | 19:794287-795593 | 19:844540-844767 | Unclassified_Cell_type_specific | chr19:844505-844810 | 3 | TRUE | 9.50e-05 | 0.1816602 | 9.50e-05 | 0.1816602 | -0.1052523 | 0.1952715 | 0.0004041 | FALSE | -3.0768045 | ||||||||||||||||
| cg07807575 | chr7 | 17338230 |
|
87766468 | 92675307 | CAAAACAAAACTACACAAAATCTAAACAAAACAAAACCAATAAAAAATCA | CGAAACGAAACTACGCGAAATCTAAACGAAACGAAACCGATAAAAAATCG | I | A | Red | NA | NA | NA | NA | NA | NA | chr7:17338252-17339101 | N_Shore | GGGCAAGCAGGACGGGGCGGGGCTACGCGGGATCTGGGCGGGGCGGGGCCGGTGAGGGGT[CG]GGGGTGCTCCTGCTATTCAGCCGGTGCGCGCGGCGGCGGGAGGCAGTGGCTGGGGAGTCC | CGGGGCGGGGCTACGCGGGATCTGGGCGGGGCGGGGCCGGTGAGGGGTCG | AHR | NM_001621 | TSS200 | high-CpG:17304707-17304828 | 7:17304602-17305708 | 7:17337965-17338344 | Promoter_Associated | AHR;AC003075.4;AC003075.4;AC003075.4 | ENST00000242057.4;ENST00000419382.1;ENST00000415246.1;ENST00000433005.1 | TSS200;TSS200;TSS200;3’UTR | AHR;AC003075.4;AC003075.4;AHR;AC003075.4 | ENST00000242057.4;ENST00000419382.1;ENST00000415246.1;ENST00000463496.1;ENST00000433005.1 | TSS200;TSS200;TSS200;TSS200;3’UTR | chr7:17337880-17339115 | 3 | TRUE | 9.51e-05 | 0.1816602 | 9.51e-05 | 0.1816602 | -0.0467658 | 0.0385636 | 0.0000798 | FALSE | -2.8663465 | |||||||||
| cg09388397 | chr1 | 212429595 |
|
37737126 | AACATATTAAATCTTAATCTAATAATCTAACCATCTAAAAAACACAACCC | II | NA | NA | NA | NA | NA | NA | OpenSea | AGGCTGAAAAAGGCATGTTAAATCTTGGTCTGATGGTCTGACCATCTGAAAAACACAGCC[CG]TTTTTTCTTTTTTGGAGCTGCAGATAGGACAATGATGAGACCGTACCTCTCTCATGCCCC | CGGGCTGTGTTTTTCAGATGGTCAGACCATCAGACCAAGATTTAACATGC | LOC101929541 | NR_125984 | Body | chr1:212429433-212429433 | 1:212429197-212430106 | Unclassified_Cell_type_specific | chr1:212428201-212430078 | 6 | chr1:212428211-212430142 | 6 | 9.52e-05 | 0.1816602 | 9.52e-05 | 0.1816602 | 0.0607516 | 0.0650862 | 0.0001347 | FALSE | -4.2203467 | ||||||||||||||||||||
| cg06271046 | chr6 | 30782234 |
|
90657280 | CAAACTACCTTAAATCCAAAAATAACCACATAACTAAATAATAAATCACC | II | NA | NA | rs2394412 | 0.365789 | rs2394412 | 0.365789 | OpenSea | ACTCACCTCCTCAGACTGCCTTGAATCCAGGGGTGGCCACATGACTGGGTAATGAGTCAC[CG]GTAGAAGTCGGCTTGATGGGGCTTTTAGGGAAACAACGGCTTTCCTGTTTTTGTTTTTCT | CGGTGACTCATTACCCAGTCATGTGGCCACCCCTGGATTCAAGGCAGTCT | TRUE | 6:30781901-30782710 | Unclassified_Cell_type_specific | LINC00243 | ENST00000399196.1 | 3’UTR | LINC00243;LINC00243 | ENST00000419357.1;ENST00000399196.1 | 3’UTR;3’UTR | chr6:30782065-30782590 | 3 | TRUE | 9.52e-05 | 0.1816602 | 9.52e-05 | 0.1816602 | 0.0885136 | 0.1381638 | 0.0002859 | FALSE | -3.2099044 | ||||||||||||||||||
| cg20018022 | chr17 | 35851415 |
|
40614174 | TACCCCRACCTATCCCTAATATAAAATATCCCTAATATAAATTCTCAAAC | II | NA | NA | NA | NA | NA | NA | chr17:35849290-35850483 | S_Shore | CCCTTGAGAAATGCAGGGAAGGAGGCACCCCCACAGTGAACGCCTCTTCTTCGCCAGAGA[CG]CCTGAGAATTCACATCAGGGACACTTCACATCAGGGACAGGCCGGGGCAGAGACCCTGAC | CGCCTGAGAATTCACATCAGGGACACTTCACATCAGGGACAGGCCGGGGC | DUSP14 | NM_007026 | 5’UTR | RDMR | 17:35851034-35851616 | Promoter_Associated | DUSP14;DUSP14 | ENST00000394386.1;ENST00000394389.4 | TSS200;5’UTR | DUSP14;DUSP14 | ENST00000394386.1;ENST00000394389.4 | TSS200;5’UTR | chr17:35848082-35851781 | 6 | chr17:35847462-35852256 | 6 | 9.53e-05 | 0.1816602 | 9.53e-05 | 0.1816602 | -0.0716349 | 0.0905204 | 0.0001873 | FALSE | 1.3113855 | |||||||||||||
| cg11532614 | chr3 | 194588235 |
|
77626237 | AAAACTAATATCCTCTAACTACTACCACATTCCAATAACCAAAACAAATC | II | NA | NA | NA | NA | NA | NA | OpenSea | GGTCTCAGCTTGGAGCTAGTGTCCTCTGACTGCTGCCACATTCCAGTGGCCAAGGCAAGT[CG]CAGGACCAAGCCCGACATCAGTGGAGTGGGGAAATACGCGCCTCTCAAGCTCCTCCCCAT | GAGCTAGTGTCCTCTGACTGCTGCCACATTCCAGTGGCCAAGGCAAGTCG | chr3:194587980-194588630 | 3 | 9.55e-05 | 0.1816602 | 9.55e-05 | 0.1816602 | 0.0425660 | 0.0319747 | 0.0000662 | FALSE | 2.0629659 | ||||||||||||||||||||||||||||
| cg16810310 | chr11 | 66104993 |
|
78643315 | AACCRAAATCAAAACCACATCCTCTTACTAATATTAAATACAAACTATCC | II | NA | NA | rs3116068 | 0.190954 | rs3116068 | 0.190954 | chr11:66102024-66102279 | S_Shelf | GATAATCACGTCTGACTCAGAGTTCCCGCACAGTGGAAACTGGCTCCCTGGCCCTGAGGC[CG]GACAGCCTGCATCCAACATCAGCAAGAGGATGTGGCTTTGACTTCGGCTGTCTTCTCTGT | GCCGAAGTCAAAGCCACATCCTCTTGCTGATGTTGGATGCAGGCTGTCCG | BRMS1;BRMS1;RIN1 | NM_015399;NM_001024957;NM_004292 | 3’UTR;3’UTR;TSS1500 | RP11-867G23.12;RIN1;RIN1;RIN1;BRMS1;BRMS1 | ENST00000526655.1;ENST00000424433.2;ENST00000311320.4;ENST00000530056.1;ENST00000425825.2;ENST00000359957.3 | 5’UTR;TSS1500;TSS1500;TSS1500;3’UTR;3’UTR | RP11-867G23.12;RIN1;RIN1;RIN1;RIN1;BRMS1;BRMS1;BRMS1;BRMS1 | ENST00000526655.1;ENST00000424433.2;ENST00000530745.1;ENST00000311320.4;ENST00000530056.1;ENST00000425825.2;ENST00000524699.1;ENST00000359957.3;ENST00000530238.1 | 5’UTR;TSS1500;TSS1500;TSS1500;TSS1500;3’UTR;3’UTR;3’UTR;3’UTR | chr11:66104780-66105555 | 3 | TRUE | 9.56e-05 | 0.1816602 | 9.56e-05 | 0.1816602 | -0.2366808 | 0.9886320 | 0.0020460 | FALSE | 0.8285325 | |||||||||||||||||
| cg10491532 | chr19 | 11610822 |
|
94740484 | ATAATACAACCCTATCACTTAATCATCAATAAACAAATAATACAATAATC | II | NA | NA | NA | NA | NA | NA | OpenSea | CGATCTTCGTCATGGTACAGCCCTGTCACTTAATCATCAATAAGCAAATGGTACAATGAT[CG]TTATGATTATCAGTATCATCGTGGAGCCTGGGCCCCCTGGCCTCCCTGCTGTGGCCCAGA | CGATCATTGTACCATTTGCTTATTGATGATTAAGTGACAGGGCTGTACCA | ZNF653 | NM_138783 | Body | chr19:11610755-11611132 | 3 | 9.58e-05 | 0.1816602 | 9.58e-05 | 0.1816602 | -0.0517363 | 0.0472570 | 0.0000978 | FALSE | 2.3301446 | |||||||||||||||||||||||||
| cg25154586 | chr4 | 175444627 |
|
28770847 | TTACAACRAACTAAAATTATACCACTACATTCTAACCAAACAAACAAAAC | II | NA | NA | NA | NA | NA | NA | chr4:175443406-175443837 | S_Shore | GTAAACGTAAGTGGTTGGCTTTTTTTTTTTTTTTTTTTTTTTAATCTTGAGACAAGATCT[CG]CTCTGTCTGTTTGGCTAGAATGCAGTGGCATAATCCCAGCTCGCTGCAACCTCAATCTCC | CGCTCTGTCTGTTTGGCTAGAATGCAGTGGCATAATCCCAGCTCGCTGCA | HPGD;HPGD;HPGD;HPGD;HPGD;HPGD | NM_001256301;NM_001145816;NM_000860;NM_001256307;NM_001256306;NM_001256305 | TSS1500;TSS1500;TSS1500;TSS1500;TSS1500;TSS1500 | HPGD;HPGD;HPGD;HPGD;HPGD;HPGD;HPGD | ENST00000542498.1;ENST00000296521.7;ENST00000422112.2;ENST00000504433.1;ENST00000541923.1;ENST00000296522.6;ENST00000510901.1 | TSS1500;TSS1500;TSS1500;TSS1500;TSS1500;TSS1500;TSS1500 | HPGD;HPGD;HPGD;HPGD;HPGD;HPGD;HPGD;HPGD;HPGD;HPGD;HPGD | ENST00000514584.1;ENST00000512410.1;ENST00000542498.1;ENST00000510835.1;ENST00000296521.7;ENST00000422112.2;ENST00000504433.1;ENST00000508330.1;ENST00000296522.6;ENST00000510901.1;ENST00000506910.1 | TSS1500;TSS1500;TSS1500;TSS1500;TSS1500;TSS1500;TSS1500;TSS1500;TSS1500;TSS1500;TSS1500 | chr4:175442614-175445018 | 6 | 9.64e-05 | 0.1816602 | 9.64e-05 | 0.1816602 | -0.0483741 | 0.0413694 | 0.0000856 | FALSE | -0.9129446 | ||||||||||||||||||
| cg03037740 | chr6 | 33176666 |
|
60787531 | TACCCAAAATACCAACAAAACRTAAAAACTAAATCTATATAAACTACACC | II | NA | NA | NA | NA | NA | NA | chr6:33175561-33176387 | S_Shore | ACGCCGGCGAATGCCCAGAATGCCAGCAAAACGTGGGAACTGAGTCTGTATGAGCTGCAC[CG]GACCCCGCAGGTGACAGGCATTCTCCCTTTCAGGCTTACCCCCTCCCCCAAACCCTTATA | GCCCAGAATGCCAGCAAAACGTGGGAACTGAGTCTGTATGAGCTGCACCG | RING1 | NM_002931 | Body | 6:33175424-33176941 | Promoter_Associated | RING1;RING1 | ENST00000478431.1;ENST00000374656.4 | TSS1500;ExonBnd | RING1;RING1 | ENST00000478431.1;ENST00000374656.4 | TSS1500;ExonBnd | chr6:33176405-33176810 | 3 | TRUE | 9.65e-05 | 0.1816602 | 9.65e-05 | 0.1816602 | 0.0516904 | 0.0472415 | 0.0000978 | FALSE | -4.1439238 | |||||||||||||||
| cg08473693 | chr1 | 205342340 |
|
91608370 | CTCTAACTCTCCAAAAATTAATTCATTAAACAAAATTATATTTAAATAAC | II | NA | NA | NA | NA | NA | NA | OpenSea | AGAATAGCCCCCTCTGGCTCTCCAGAGATTGATTCATTAGGCAGGGTTGTGTTTAGGTGA[CG]CCCACAAACGAGAACATTCATAGCAGCCATCATTTCTCAGTGAATGCGGTCCTGTAAATG | TCTGGCTCTCCAGAGATTGATTCATTAGGCAGGGTTGTGTTTAGGTGACG | TRUE | RP11-576D8.2 | ENST00000447832.1 | TSS200 | RP11-576D8.2 | ENST00000447832.1 | TSS200 | chr1:205342145-205342410 | 3 | TRUE | 9.65e-05 | 0.1816602 | 9.65e-05 | 0.1816602 | 0.0418039 | 0.0308986 | 0.0000639 | FALSE | 3.5521770 | ||||||||||||||||||||
| cg08811177 | chr16 | 30772129 |
|
9730223 | CRACRTAAAACTAAACTCTTTTACCAACTTACTATATAACTATACAAATC | II | NA | NA | NA | NA | NA | NA | chr16:30772530-30774003 | N_Shore | GAGTTGGCCACCGGCGTGAAGCTGGGCTCTTTTGCCAGCTTGCTGTGTGACTATGCAAAT[CG]TTAACTCTCTGGGCCTAAATGAACTCTTATGAGCCTCTCCATTTCTAAAGCCTAGGGTTA | CGATTTGCATAGTCACACAGCAAGCTGGCAAAAGAGCCCAGCTTCACGCC | RNF40;RNF40;RNF40;PHKG2;C16orf93;RNF40;PHKG2;C16orf93 | NM_001207034;NM_001207033;NM_014771;NM_001172432;NM_001195620;NM_001286572;NM_000294;NM_001014979 | TSS1500;TSS1500;TSS1500;3’UTR;Body;TSS1500;3’UTR;Body | RNF40;PHKG2 | ENST00000324685.6;ENST00000563588.1 | TSS1500;3’UTR | C16orf93;RNF40;C16orf93;RNF40;C16orf93;C16orf93;RNF40;PHKG2;C16orf93;C16orf93;C16orf93;C16orf93;C16orf93 | ENST00000535476.2;ENST00000563909.1;ENST00000545809.1;ENST00000324685.6;ENST00000544613.1;ENST00000537986.1;ENST00000566811.1;ENST00000563588.1;ENST00000546006.1;ENST00000544643.1;ENST00000543128.1;ENST00000544487.1;ENST00000433909.2 | TSS1500;TSS1500;3’UTR;TSS1500;TSS1500;TSS1500;TSS1500;3’UTR;3’UTR;3’UTR;3’UTR;3’UTR;3’UTR | chr16:30771483-30772272 | 3 | 9.65e-05 | 0.1816602 | 9.65e-05 | 0.1816602 | -0.0449109 | 0.0356643 | 0.0000738 | FALSE | 2.4407215 | ||||||||||||||||||
| cg09309214 | chr7 | 714756 |
|
76656412 | TATAAACTACTACCTTTACCAAAATCACRTAAAAAACTTCTAATTTCTCC | II | NA | NA | rs117616574 | 0.017795 | rs117616574 | 0.017795 | OpenSea | CTGAATACCAGGAGTCTCCTGCCTAACCACAGCATCACTACTCACGGAAACATCGGAGCA[CG]GAGAAATCAGAAGCCTCCCACGTGACCTTGGCAAAGGCAGCAGTTCATAAACTCTGATTC | CGGAGAAATCAGAAGCCTCCCACGTGACCTTGGCAAAGGCAGCAGTTCAT | PRKAR1B;PRKAR1B;PRKAR1B;PRKAR1B;PRKAR1B;PRKAR1B | NM_002735;NM_001164762;NM_001164761;NM_001164759;NM_001164760;NM_001164758 | Body;Body;Body;Body;Body;Body | chr7:714300-714890 | 3 | 9.66e-05 | 0.1816602 | 9.66e-05 | 0.1816602 | 0.0678380 | 0.0813886 | 0.0001684 | FALSE | 3.8729408 | |||||||||||||||||||||||||
| cg16720578 | chr14 | 54410717 |
|
94743394 | AACTCAAACATTTTTATTAACTAAACACATTAAAAAACTTACATCCACAC | II | NA | NA | NA | NA | NA | NA | chr14:54413304-54413764 | N_Shelf | CTTCCCCAGGTTGCAACTGACTTTCTCCAGGGAAGGAATATATTCCCAAGTTGATCAAAT[CG]TGTGGATGCAAGTCTTCCAATGTGCTCAGTCAACAAAAATGTCTGAGCCTGGGATGTCAG | CGTGTGGATGCAAGTCTTCCAATGTGCTCAGTCAACAAAAATGTCTGAGC | chr14:54410485-54410915 | 3 | TRUE | 9.67e-05 | 0.1816602 | 9.67e-05 | 0.1816602 | 0.0698088 | 0.0861996 | 0.0001784 | FALSE | -0.8442594 | ||||||||||||||||||||||||||
| cg21234244 | chr9 | 98491311 |
|
78616336 | TTCRACCAAAAAAAACRTTAAAATATCCCTCAAAACAAAACTTCATTTAC | II | rs456586 | 0.432543 | NA | NA | NA | NA | chr9:98491389-98491697 | N_Shore | TGCCTCTTGTTTTCGGCCAAGGGAGACGTTGAGGTGTCCCTCAGGACAGGACTTCATTTG[CG]TGGGAGGGGAGAAGGGCGCTTCTGACTACTTTGCATTGGTGTGTGGGCTGGACACAGTGA | CGCAAATGAAGTCCTGTCCTGAGGGACACCTCAACGTCTCCCTTGGCCGA | 9:97530897-97531501 | chr9:98491120-98491655 | 3 | TRUE | 9.67e-05 | 0.1816602 | 9.67e-05 | 0.1816602 | -0.0580513 | 0.0596085 | 0.0001234 | FALSE | 3.7568550 | |||||||||||||||||||||||||
| cg07480955 | chr6 | 31038593 |
|
22763263 | ACCTATAAATAACCACATCAAACAAAATTAACTCRACTCCACATCAACTC | II | NA | NA | rs2523896 | 0.465997 | rs2523896 | 0.465997 | OpenSea | GTTTTCAGGGCAAGGCTGTGTAAGTATTTCCAGCAGACTAGTGTGAGGCATGCTAGGAAG[CG]AGCTGATGTGGAGCCGAGCTAATCCTGTCTGATGTGGCCACCTACAGGCATCAACAGGCC | CCTGTAGGTGGCCACATCAGACAGGATTAGCTCGGCTCCACATCAGCTCG | TRUE | 6:31038242-31039191 | Unclassified_Cell_type_specific | chr6:31038500-31038755 | 3 | TRUE | 9.69e-05 | 0.1816602 | 9.69e-05 | 0.1816602 | 0.0957700 | 0.1623210 | 0.0003359 | FALSE | 0.8057955 | ||||||||||||||||||||||||
| cg18771300 | chr14 | 63671737 |
|
55738951 | AAAATTTCCCACTTTTTCTTACCTACATAATAATCAAACACAATAAACAC | II | NA | NA | NA | NA | NA | NA | OpenSea | TGCCGTGGGGAAAACCTGCCTGCTGATGAGCTACGCCAACGACGCCTTCCCAGAGGAATA[CG]TGCCCACTGTGTTTGACCACTATGCAGGTAAGAAAAAGTGGGAAACTCTCTGCATCCAGA | CGTGCCCACTGTGTTTGACCACTATGCAGGTAAGAAAAAGTGGGAAACTC | RHOJ | NM_020663 | 1stExon | TRUE | RHOJ;RHOJ;RHOJ;RHOJ | ENST00000316754.3;ENST00000557133.1;ENST00000555125.1;ENST00000557133.1 | 1stExon;1stExon;1stExon;5’UTR | RHOJ;RHOJ;RHOJ;RHOJ;RHOJ | ENST00000557447.1;ENST00000316754.3;ENST00000557133.1;ENST00000555125.1;ENST00000557133.1 | 1stExon;1stExon;1stExon;1stExon;5’UTR | chr14:63671325-63671750 | 3 | TRUE | TRUE | 9.71e-05 | 0.1816602 | 9.71e-05 | 0.1816602 | 0.0821918 | 0.1195931 | 0.0002475 | FALSE | 0.8401073 | ||||||||||||||||
| cg25342508 | chr5 | 150415651 |
|
23668973 | AACCAAAATTTAAATCTACTAATTCTAAAAACAAAAACCCTACAAACTCC | II | NA | NA | rs7727250 | 0.158636 | NA | NA | OpenSea | AGTGTGGTGTAGACCAGAGTTTGGATCTGCTGGTTCTGAGGGCAGAGACCCTACAAACTC[CG]CTAGGGCTCCAGGGTGCCCTGGCAGAGGTGGGTTGGGTGGGGCCTGCCTCTGTCTCTTAG | CGGAGTTTGTAGGGTCTCTGCCCTCAGAACCAGCAGATCCAAACTCTGGT | TNIP1;TNIP1;TNIP1;TNIP1;TNIP1;TNIP1;TNIP1;TNIP1;TNIP1;TNIP1 | NM_001252393;NM_001252392;NM_001258456;NM_001252386;NM_001258455;NM_001252391;NM_001252390;NM_006058;NM_001258454;NM_001252385 | Body;Body;Body;Body;Body;Body;Body;Body;Body;Body | TNIP1 | ENST00000521423.1 | 3’UTR | TNIP1;TNIP1;TNIP1 | ENST00000522574.1;ENST00000517329.1;ENST00000521423.1 | 3’UTR;TSS1500;3’UTR | chr5:150412863-150415851 | 6 | 9.71e-05 | 0.1816602 | 9.71e-05 | 0.1816602 | 0.1625300 | 0.4676556 | 0.0009678 | FALSE | -0.4657695 | |||||||||||||||||||
| cg09513835 | chr1 | 231177198 |
|
88793875 | AAAAAAACAAAATCTCTCTCTCTCTTCTCTTTTCCTCTAAAATATACRTC | II | rs6684978 | 0.053588 | NA | NA | NA | NA | chr1:231176785-231177009 | S_Shore | GAAACCAGAGAAAGGGATTAAATCTCGGAAATTATCCATCAGCTCAGGCAAAAATAAACA[CG]ACGCACACCTCAGAGGAAAAGAGAAGAGAGAGAGAGACTCTGCCCCTCCCAGGAAAAGTA | CGACGCACACCTCAGAGGAAAAGAGAAGAGAGAGAGAGACTCTGCCCCTC | FAM89A | NM_198552 | TSS1500 | FAM89A | ENST00000366654.4 | TSS1500 | FAM89A | ENST00000366654.4 | TSS1500 | chr1:231175905-231177395 | 3 | 9.76e-05 | 0.1816602 | 9.76e-05 | 0.1816602 | 0.0592119 | 0.0621353 | 0.0001286 | FALSE | -3.0273743 | ||||||||||||||||||
| cg03210277 | chr1 | 26233332 |
|
8669137 | AATAACRCACTAAAAAAAACACTACTCTATCCRAATACTACCCTTAAAAC | II | NA | NA | NA | NA | NA | NA | chr1:26231950-26233624 | Island | TCCCTACCTTTCCAAACTTTGGCCGCCTGGACTCCACCTTGTAGAGCCACATGCCCGCCT[CG]CCCCAAGGGCAGCACTCGGACAGAGCAGTGCCCCTTCTAGTGCGCCACCCACATGGGTGC | CGCCCCAAGGGCAGCACTCGGACAGAGCAGTGCCCCTTCTAGTGCGCCAC | STMN1;STMN1;STMN1;STMN1;STMN1 | NM_203399;NM_005563;NM_203401;NM_203399;NM_001145454 | 1stExon;TSS1500;TSS1500;5’UTR;TSS1500 | 1:26104546-26106211 | STMN1;STMN1;STMN1;STMN1;STMN1 | ENST00000357865.2;ENST00000399728.1;ENST00000465604.1;ENST00000426559.2;ENST00000357865.2 | 5’UTR;TSS1500;TSS1500;TSS1500;1stExon | STMN1;STMN1;STMN1;STMN1;STMN1;STMN1 | ENST00000357865.2;ENST00000446334.1;ENST00000399728.1;ENST00000465604.1;ENST00000426559.2;ENST00000357865.2 | 5’UTR;TSS1500;TSS1500;TSS1500;TSS1500;1stExon | chr1:26233185-26233795 | 3 | TRUE | 9.80e-05 | 0.1816602 | 9.80e-05 | 0.1816602 | 0.0561754 | 0.0559673 | 0.0001158 | FALSE | -3.9934289 | ||||||||||||||||
| cg20950181 | chr16 | 62699444 |
|
24625278 | TCTTCCATTCTAACAACCTATATATCTAAACACTTAACTAAATTTCTACC | II | NA | NA | NA | NA | NA | NA | OpenSea | CTGGAATAGGCATTTCAAAGGCCCACAGTGTTATGCAAATGCTTCTATTCTCCATGTGGG[CG]GCAGAAACCCAGCCAAGTGCCCAGACACACAGGCTGTCAGAATGGAAGAGGAAATGCATT | CTTCCATTCTGACAGCCTGTGTGTCTGGGCACTTGGCTGGGTTTCTGCCG | TRUE | chr16:62699300-62699495 | 3 | 9.82e-05 | 0.1816602 | 9.82e-05 | 0.1816602 | -0.0419730 | 0.0312581 | 0.0000647 | FALSE | 2.4036134 | |||||||||||||||||||||||||||
| cg15454151 | chr7 | 144527352 |
|
17631980 | AAAATAAAACTCAACTTCACTCCTTCCTACCCTACTATATAAATAAATTC | II | NA | NA | NA | NA | NA | NA | OpenSea | TACACACACCCTCCTGTATACTTTAAATCATCTGTAGATTAGACTGTCTGTGGCCAGTTA[CG]AACCCACCCACACAGTAGGGCAGGAAGGAGTGAAGCTGAGCTCCACCTCCTGTCATATCA | CGAACCCACCCACACAGTAGGGCAGGAAGGAGTGAAGCTGAGCTCCACCT | TPK1;TPK1 | NM_022445;NM_001042482 | Body;Body | chr7:144527020-144528637 | 4 | 9.84e-05 | 0.1816602 | 9.84e-05 | 0.1816602 | -0.0518878 | 0.0477934 | 0.0000989 | FALSE | 2.3366752 | |||||||||||||||||||||||||
| cg22953237 | chr7 | 31425682 |
|
60756159 | AAACTAATCTAATAATATAAACCCAAATTACCTTTTACATCCTAAATAAC | II | NA | NA | rs17160113 | 0.298343 | rs17160113 | 0.298343 | OpenSea | AACTCTTACCCAGGCTGGTCTGGTGGTGTGAACCCAGGTTACCTTTTACATCCTGAGTGA[CG]CGTAACAAGCCTCTACAGTCTAAATTTCAAGGTCTAGTTCCTCTTGAGAGGGCTTGCCAT | GGCTGGTCTGGTGGTGTGAACCCAGGTTACCTTTTACATCCTGAGTGACG | TRUE | 9.85e-05 | 0.1816602 | 9.85e-05 | 0.1816602 | -0.1241836 | 0.2738129 | 0.0005667 | FALSE | 1.9925771 | |||||||||||||||||||||||||||||
| cg20267559 | chr3 | 71772939 |
|
60738903 | ACCTATAAAAACAAACACRATTTCATTCTACTAAAATCTACCAAAAACAC | II | NA | NA | NA | NA | NA | NA | chr3:71773826-71774873 | N_Shore | AGTTGCAGCACACCTATGAAAACAGACACGATTTCATTCTGCTAAGGTCTGCCAAAAGCA[CG]CTTGTTATGACAGTATAATGCTCTCTTAGCATCCCATAATGAAAGTGAAAATGTTTTGAA | CCTATGAAAACAGACACGATTTCATTCTGCTAAGGTCTGCCAAAAGCACG | EIF4E3;EIF4E3;EIF4E3;EIF4E3;EIF4E3 | NM_001134651;NM_001134650;NM_001282886;NM_001134649;NM_173359 | Body;5’UTR;5’UTR;5’UTR;5’UTR | chr3:71772738-71772738 | EIF4E3;EIF4E3;EIF4E3;EIF4E3;EIF4E3 | ENST00000468147.1;ENST00000389826.3;ENST00000295612.3;ENST00000448225.1;ENST00000421769.2 | 3’UTR;5’UTR;5’UTR;5’UTR;5’UTR | EIF4E3;EIF4E3;EIF4E3;EIF4E3;EIF4E3;EIF4E3;EIF4E3;EIF4E3;EIF4E3 | ENST00000481525.1;ENST00000468147.1;ENST00000469524.1;ENST00000389826.3;ENST00000497838.1;ENST00000295612.3;ENST00000448225.1;ENST00000496214.2;ENST00000421769.2 | 3’UTR;3’UTR;5’UTR;5’UTR;5’UTR;5’UTR;5’UTR;5’UTR;5’UTR | chr3:71772685-71773095 | 3 | 9.87e-05 | 0.1816602 | 9.87e-05 | 0.1816602 | 0.0551549 | 0.0540277 | 0.0001118 | FALSE | -3.0683517 | |||||||||||||||||
| cg26694502 | chr1 | 52998370 |
|
80705893 | AATTTAACTATCTCAAATATTCCCCTTAAAAACATACATAACTATACAAC | II | NA | NA | NA | NA | NA | NA | OpenSea | TGAAAGGTATGGATTTAGCTATCTCAAATATTCCCCTTAAAAACATACATAACTGTGCAA[CG]TAAGTACCTCCCCACCCTACCACCATCCTCCTAGGATGATTTTAATAAGATATGCCAATA | CGTTGCACAGTTATGTATGTTTTTAAGGGGAATATTTGAGATAGCTAAAT | ZCCHC11;ZCCHC11 | NM_001009881;NM_015269 | 5’UTR;5’UTR | ZCCHC11;ZCCHC11;ZCCHC11 | ENST00000257177.4;ENST00000355809.4;ENST00000371544.3 | 5’UTR;5’UTR;5’UTR | ZCCHC11;ZCCHC11;ZCCHC11;ZCCHC11;ZCCHC11;ZCCHC11;ZCCHC11;ZCCHC11 | ENST00000484723.2;ENST00000257177.4;ENST00000355809.4;ENST00000473856.1;ENST00000528642.1;ENST00000470626.1;ENST00000371544.3;ENST00000524582.1 | 5’UTR;5’UTR;5’UTR;5’UTR;5’UTR;5’UTR;5’UTR;5’UTR | chr1:52997658-52998908 | 6 | chr1:52997907-52998782 | 4 | 9.87e-05 | 0.1816602 | 9.87e-05 | 0.1816602 | -0.0509191 | 0.0460563 | 0.0000953 | FALSE | 2.7634972 | |||||||||||||||||
| cg25788719 | chr20 | 3713002 |
|
63779202 | 79628912 | CCCTCACTAAAAAAACCAAAACTAAACCCCAAAATAAACCTATAAAAACA | CCCTCGCTAAAAAAACCGAAACTAAACCCCAAAATAAACCTATAAAAACG | I | A | Red | rs62206552 | 0.260055 | NA | NA | NA | NA | chr20:3713159-3713515 | N_Shore | TCCGCTGTTGGGCCCTCGCTGAAGGGGCCGAGGCTGAGCCCCAAGGTGGGCCTGTGGGGG[CG]GGGCGGGGGAGCCCCTCAGCAGCTGGACCGCAGGAGGCCGACCAGGGTCTGGAACTCCTC | CCCTCGCTGAAGGGGCCGAGGCTGAGCCCCAAGGTGGGCCTGTGGGGGCG | HSPA12B | NM_052970 | TSS1500 | 20:3712909-3713381 | Unclassified_Cell_type_specific | HSPA12B;HSPA12B;HSPA12B | ENST00000254963.2;ENST00000542646.1;ENST00000399701.1 | TSS1500;TSS1500;TSS1500 | HSPA12B;HSPA12B;HSPA12B | ENST00000254963.2;ENST00000542646.1;ENST00000399701.1 | TSS1500;TSS1500;TSS1500 | chr20:3712492-3714517 | 6 | TRUE | 9.88e-05 | 0.1816602 | 9.88e-05 | 0.1816602 | 0.0389714 | 0.0269835 | 0.0000558 | FALSE | 2.0071532 | |||||||||||
| cg04778274 | chr19 | 35615444 |
|
88696346 | 61785274 | AAATCCACAACACTAAACAAAAAAAATACACAACACATTTATTAAACTCA | AAATCCACAACACTAAACGAAAAAAATACACAACGCATTTATTAAACTCG | I | A | Red | NA | NA | NA | NA | NA | NA | chr19:35615412-35615665 | Island | ATCCTCTCCCAAGGATCCACAACACTGGGCGGGGAGGGTGCACAGCGCATTTATTGAGCT[CG]GACTCGTCTTGTCCTTGCCTCCGTCGCCCATCTAGAAGGGCACCAGGCTCCCCGCGACAC | GGATCCACAACACTGGGCGGGGAGGGTGCACAGCGCATTTATTGAGCTCG | LGI4 | NM_139284 | 3’UTR | RDMR | 19:40307144-40307631 | 19:35614962-35616029 | Unclassified | LGI4;LGI4 | ENST00000310123.3;ENST00000392225.3 | 3’UTR;3’UTR | LGI4;LGI4 | ENST00000310123.3;ENST00000392225.3 | 3’UTR;3’UTR | chr19:35615420-35615695 | 3 | TRUE | 9.93e-05 | 0.1816602 | 9.93e-05 | 0.1816602 | 0.0437167 | 0.0339868 | 0.0000703 | FALSE | -3.1828906 | |||||||||
| cg01658895 | chr5 | 74621313 |
|
37714146 | ACATAAAACACTATTATCTACAACCACACATTTATAAAATCTCTCTCAAC | II | NA | NA | NA | NA | NA | NA | OpenSea | TTTGGAACTAAACAAACCAAAAAAAAACCCCTGTGATTCACTACAGGCAGAAGAGTTTCA[CG]CTGAGAGAGACCTTATAAATGTGTGGTTGCAGATAATAGTGTTTCATGTATAAAAGCAAG | CGCTGAGAGAGACCTTATAAATGTGTGGTTGCAGATAATAGTGTTTCATG | CTD-2235C13.2 | ENST00000501886.2 | 3’UTR | CTD-2235C13.2 | ENST00000501886.2 | 3’UTR | chr5:74621140-74621555 | 3 | 9.96e-05 | 0.1816602 | 9.96e-05 | 0.1816602 | -0.0394854 | 0.0277438 | 0.0000574 | FALSE | 2.1789287 | ||||||||||||||||||||||
| cg25299586 | chr22 | 20277199 |
|
79713388 | AAATCAATTAAAAATAAACATCCCCCTAAAACTAACCCATAACAAAAACC | II | NA | NA | NA | NA | NA | NA | OpenSea | GCCAGTGCCCCCCAGGCCTGGCTAAAGAAATCTCAAATACCCCGAAGGGCCTGGCTCCAG[CG]GCCCCTGCTATGGGTCAGCCTCAGGGGGATGCTCATCTTCAATTGACCCTGACTGTTCCA | CGGCCCCTGCTATGGGTCAGCCTCAGGGGGATGCTCATCTTCAATTGACC | chr22:20276324-20278006 | 6 | 9.98e-05 | 0.1816602 | 9.98e-05 | 0.1816602 | -0.0444719 | 0.0352091 | 0.0000729 | FALSE | 3.0484077 |
Visualise the effect of RUV adjustment
#Madj <- getAdjusted(mValsSw, rfit2)
# cant get this part to work
mvals <- mvals[which(rownames(mvals) %in% colnames(rfit2$Y) ),]
#Madj <- missMethyl::getAdj(Y = mValsSq, fit = rfit2)
plotMDS(mvals, labels=targets_gen$Sample_Name,
col=as.integer(factor(targets_gen$Social_interaction_on_ADOS)),
main="Unadjusted")
#legend(legend=c("1","0"),pch=7,cex=0.7,col=1:2)
# i had to comment the below stuff out because Madj couldn't be generated.
#plotMDS(Madj, labels=targets_gen$Sample_Name,
# col=as.integer(factor(targets_gen$Social_interaction_on_ADOS)),
# main="Adjusted: RUV-inverse")
#legend(legend=c("1","0"),pch=7,cex=0.7,col=1:2)
#Trying different k values
# mark fixed a major bug here
rfit_k1 <- RUVfit(Y=mvals, X=design_tw[,"ADOS"], ctl=ctl,
method = "ruv4", k=1) # Stage 2 analysis
rfit_k1 <- RUVadj(Y=mvals, fit=rfit_k1)
rfit_k2 <- RUVfit(Y=mvals, X=design_tw[,"ADOS"], ctl=ctl,
method = "ruv4", k=2) # Stage 2 analysis
rfit_k2 <- RUVadj(Y=mvals, fit=rfit_k2)
rfit_k8 <- RUVfit(Y=mvals, X=design_tw[,"ADOS"], ctl=ctl,
method = "ruv4", k=8) # Stage 2 analysis
rfit_k8 <- RUVadj(Y=mvals, fit=rfit_k8)
#get adjusted values - doesn't work as at Apr 2022.
#Madj1 <- missMethyl::getAdj(Y=mValsSq, fit=rfit_k1)
#Madj2 <- missMethyl::getAdj(Y=mValsSq, fit=rfit_k2)
#Madj3 <- missMethyl::getAdj(Y=mValsSq, fit=rfit_k8)
#Visualise plots
par(mfrow=c(1,1))
plotMDS(mvals, labels=targets_gen$Sample_Name,
col=as.integer(factor(targets_gen$Diagnosis)),
dim=c(14,15),
main="Adjusted")
#legend("topleft",legend=c("Cancer","Normal"),pch=16,cex=1,col=1:2)
#plotMDS(Madj, labels=targets_gen$Sample_Name, col=as.integer(factor(targets_gen$Diagnosis..L.0..M.1..H.2.)),dim=c(14,15),
# main="Adjusted: RUV-inverse")
#legend("topleft",legend=c("Cancer","Normal"),pch=16,cex=1,col=1:2)
#plotMDS(Madj1, labels=targets_gen$Sample_Name, col=as.integer(factor(targets_gen$Diagnosis..L.0..M.1..H.2.)),dim=c(14,15),
# main="Adjusted: RUV-4, k=1")
#legend("bottomleft",legend=c("Cancer","Normal"),pch=16,cex=1,col=1:2)
#plotMDS(Madj2, labels=targets_gen$Sample_Name, col=as.integer(factor(targets_gen$Diagnosis..L.0..M.1..H.2.)),dim=c(14,15),
# main="Adjusted: RUV-4, k=2")
#legend("bottomright",legend=c("Cancer","Normal"),pch=16,cex=1,col=1:2)
#plotMDS(Madj3, labels=targets_gen$Sample_Name, col=as.integer(factor(targets_gen$Diagnosis..L.0..M.1..H.2.)),dim=c(14,15),
# main="Adjusted: RUV-4, k=8")
#legendPlotting effect sizes of top DMPs
res <- read.csv("ASD_blood_topruv80pc_dmps_onADOS_withintw_Nov29.csv", header = TRUE)
TOPPROBES <- head(res$Name,9)
effect_plot <- function(PROBE) {
GENE <- res[which(res$Name==PROBE),"UCSC_RefGene_Name"]
GENE <- paste0(unique(unlist(strsplit(GENE,";"))),collapse=";")
HEADER=paste(GENE,PROBE)
BETAS <- ilogit2(mDat[rownames(mDat) == PROBE,])
plot(BETAS, ADOS, main = HEADER, ylab = "ADOS", xlab = "Beta Value")
regl5 <- lm(ADOS ~ BETAS)
SLOPE=signif(regl5$coefficients[2],3)
abline(regl5)
mycor <- cor.test(ADOS, BETAS, method = "pearson")
mycor_stat <- signif(mycor$estimate,3)
mycor_p <- signif(mycor$p.value,3)
SUBHEAD <- paste("R=",mycor_stat," p=",mycor_p," slope=",SLOPE, sep="")
mtext(SUBHEAD,cex=0.6)
}
par(mfrow=c(3,3))
sapply(TOPPROBES,effect_plot)
## $cg15423357
## NULL
##
## $cg19385288
## NULL
##
## $cg06705862
## NULL
##
## $cg16245467
## NULL
##
## $cg21130286
## NULL
##
## $cg14117219
## NULL
##
## $cg17380795
## NULL
##
## $cg24749559
## NULL
##
## $cg13076460
## NULLpdf("effect_blood.pdf")
par(mfrow=c(3,3))
sapply(TOPPROBES,effect_plot)## $cg15423357
## NULL
##
## $cg19385288
## NULL
##
## $cg06705862
## NULL
##
## $cg16245467
## NULL
##
## $cg21130286
## NULL
##
## $cg14117219
## NULL
##
## $cg17380795
## NULL
##
## $cg24749559
## NULL
##
## $cg13076460
## NULLdev.off()## png
## 2par(mfrow=c(1,1))Gene ontology of top RUV DMPs
Gene Ontology analysis (gometh): top 1000 probes (RUV data).
res <- read.csv("ASD_blood_topruv80pc_dmps_onADOS_withintw_Nov29.csv", header = TRUE)
sigCpGs_1k = res$Name[1:1000]
sigCpGs_1k = as.character(sigCpGs_1k)
all = res$Name
length(all)## [1] 802647# kegg
gometh_kegg <- gometh(sig.cpg = sigCpGs_1k, all.cpg = all, collection = "KEGG", prior.prob=TRUE)## All input CpGs are used for testing.gometh_kegg <- subset(gometh_kegg,DE>2)
gometh_kegg$FDR <- p.adjust(gometh_kegg$P.DE)
gometh_kegg <- gometh_kegg[order(gometh_kegg$P.DE),]
head( gometh_kegg , 20)## Description N DE P.DE
## path:hsa04710 Circadian rhythm 33 4 0.007811074
## path:hsa04670 Leukocyte transendothelial migration 106 6 0.033840938
## path:hsa00280 Valine, leucine and isoleucine degradation 47 3 0.062084002
## path:hsa04310 Wnt signaling pathway 163 8 0.075426645
## path:hsa04530 Tight junction 161 7 0.076924001
## path:hsa04979 Cholesterol metabolism 50 3 0.077320261
## path:hsa05205 Proteoglycans in cancer 199 9 0.081769877
## path:hsa04940 Type I diabetes mellitus 41 3 0.087061714
## path:hsa05322 Systemic lupus erythematosus 114 4 0.090051719
## path:hsa05132 Salmonella infection 239 8 0.119334275
## path:hsa05150 Staphylococcus aureus infection 88 3 0.122743988
## path:hsa05321 Inflammatory bowel disease 61 3 0.147332522
## path:hsa04120 Ubiquitin mediated proteolysis 134 5 0.159016539
## path:hsa03018 RNA degradation 74 3 0.160781251
## path:hsa04974 Protein digestion and absorption 93 4 0.162012371
## path:hsa04512 ECM-receptor interaction 86 4 0.188388581
## path:hsa04330 Notch signaling pathway 57 3 0.195221039
## path:hsa05130 Pathogenic Escherichia coli infection 187 6 0.211867800
## path:hsa04659 Th17 cell differentiation 103 4 0.215598612
## path:hsa05217 Basal cell carcinoma 63 3 0.252672567
## FDR
## path:hsa04710 0.4842866
## path:hsa04670 1.0000000
## path:hsa00280 1.0000000
## path:hsa04310 1.0000000
## path:hsa04530 1.0000000
## path:hsa04979 1.0000000
## path:hsa05205 1.0000000
## path:hsa04940 1.0000000
## path:hsa05322 1.0000000
## path:hsa05132 1.0000000
## path:hsa05150 1.0000000
## path:hsa05321 1.0000000
## path:hsa04120 1.0000000
## path:hsa03018 1.0000000
## path:hsa04974 1.0000000
## path:hsa04512 1.0000000
## path:hsa04330 1.0000000
## path:hsa05130 1.0000000
## path:hsa04659 1.0000000
## path:hsa05217 1.0000000write.csv(gometh_kegg, file = "GOmeth_kegg.csv", row.names = TRUE)
# GO terms
gometh_go <- gometh(sig.cpg = sigCpGs_1k, all.cpg = all, collection = "GO" , prior.prob=TRUE)## All input CpGs are used for testing.gometh_go <- subset(gometh_go,DE>2)
gometh_go$FDR <- p.adjust(gometh_go$P.DE)
gometh_go <- gometh_go[order(gometh_go$P.DE),]
head( gometh_go , 20)## ONTOLOGY
## GO:0070273 MF
## GO:0032532 BP
## GO:0005902 CC
## GO:0098927 BP
## GO:0098858 CC
## GO:0032536 BP
## GO:0034383 BP
## GO:0032488 BP
## GO:0032530 BP
## GO:0050765 BP
## GO:0005912 CC
## GO:1901981 MF
## GO:0045022 BP
## GO:0035331 BP
## GO:0016339 BP
## GO:0035864 BP
## GO:1905048 BP
## GO:0034381 BP
## GO:0005788 CC
## GO:0035091 MF
## TERM
## GO:0070273 phosphatidylinositol-4-phosphate binding
## GO:0032532 regulation of microvillus length
## GO:0005902 microvillus
## GO:0098927 vesicle-mediated transport between endosomal compartments
## GO:0098858 actin-based cell projection
## GO:0032536 regulation of cell projection size
## GO:0034383 low-density lipoprotein particle clearance
## GO:0032488 Cdc42 protein signal transduction
## GO:0032530 regulation of microvillus organization
## GO:0050765 negative regulation of phagocytosis
## GO:0005912 adherens junction
## GO:1901981 phosphatidylinositol phosphate binding
## GO:0045022 early endosome to late endosome transport
## GO:0035331 negative regulation of hippo signaling
## GO:0016339 calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules
## GO:0035864 response to potassium ion
## GO:1905048 regulation of metallopeptidase activity
## GO:0034381 plasma lipoprotein particle clearance
## GO:0005788 endoplasmic reticulum lumen
## GO:0035091 phosphatidylinositol binding
## N DE P.DE FDR
## GO:0070273 28 5 0.0002967398 0.5813132
## GO:0032532 7 3 0.0005193900 1.0000000
## GO:0005902 91 8 0.0011937086 1.0000000
## GO:0098927 42 5 0.0020804276 1.0000000
## GO:0098858 214 13 0.0024252190 1.0000000
## GO:0032536 12 3 0.0031113776 1.0000000
## GO:0034383 34 4 0.0031209471 1.0000000
## GO:0032488 14 3 0.0033136471 1.0000000
## GO:0032530 13 3 0.0046135129 1.0000000
## GO:0050765 22 3 0.0057051544 1.0000000
## GO:0005912 169 11 0.0075881440 1.0000000
## GO:1901981 170 10 0.0079823327 1.0000000
## GO:0045022 39 4 0.0086311800 1.0000000
## GO:0035331 12 3 0.0088816543 1.0000000
## GO:0016339 42 4 0.0096727383 1.0000000
## GO:0035864 18 3 0.0102257908 1.0000000
## GO:1905048 24 3 0.0109699509 1.0000000
## GO:0034381 53 4 0.0109889399 1.0000000
## GO:0005788 293 13 0.0113880096 1.0000000
## GO:0035091 262 13 0.0114292532 1.0000000write.csv(gometh_go, file = "GOmeth_go.csv", row.names = TRUE)Now specifically analyse hypermethylated probes
res2 <- subset(res,b_X1>0)
sigCpGs_1k = res2$Name[1:1000]
sigCpGs_1k = as.character(sigCpGs_1k)
# kegg
gometh_kegg <- gometh(sig.cpg = sigCpGs_1k, all.cpg = all, collection = "KEGG", prior.prob=TRUE)## All input CpGs are used for testing.gometh_kegg <- subset(gometh_kegg,DE>2)
gometh_kegg$FDR <- p.adjust(gometh_kegg$P.DE)
gometh_kegg <- gometh_kegg[order(gometh_kegg$P.DE),]
head( gometh_kegg , 20)## Description N DE P.DE
## path:hsa05322 Systemic lupus erythematosus 114 7 0.006088364
## path:hsa04710 Circadian rhythm 33 4 0.012735351
## path:hsa00790 Folate biosynthesis 26 3 0.016020913
## path:hsa05323 Rheumatoid arthritis 89 6 0.016484983
## path:hsa05320 Autoimmune thyroid disease 40 4 0.019403713
## path:hsa05321 Inflammatory bowel disease 61 5 0.020019751
## path:hsa04672 Intestinal immune network for IgA production 44 4 0.022185790
## path:hsa05310 Asthma 27 3 0.030859110
## path:hsa04940 Type I diabetes mellitus 41 4 0.031933157
## path:hsa04350 TGF-beta signaling pathway 93 6 0.040325640
## path:hsa04514 Cell adhesion molecules 141 8 0.046662364
## path:hsa04120 Ubiquitin mediated proteolysis 134 7 0.052214986
## path:hsa00982 Drug metabolism - cytochrome P450 65 3 0.056877915
## path:hsa04670 Leukocyte transendothelial migration 106 6 0.062609198
## path:hsa05204 Chemical carcinogenesis - DNA adducts 63 3 0.065212795
## path:hsa04392 Hippo signaling pathway - multiple species 28 3 0.065809498
## path:hsa05330 Allograft rejection 34 3 0.066196539
## path:hsa05332 Graft-versus-host disease 38 3 0.070224817
## path:hsa05150 Staphylococcus aureus infection 88 4 0.072359398
## path:hsa04064 NF-kappa B signaling pathway 95 5 0.075798254
## FDR
## path:hsa05322 0.6088364
## path:hsa04710 1.0000000
## path:hsa00790 1.0000000
## path:hsa05323 1.0000000
## path:hsa05320 1.0000000
## path:hsa05321 1.0000000
## path:hsa04672 1.0000000
## path:hsa05310 1.0000000
## path:hsa04940 1.0000000
## path:hsa04350 1.0000000
## path:hsa04514 1.0000000
## path:hsa04120 1.0000000
## path:hsa00982 1.0000000
## path:hsa04670 1.0000000
## path:hsa05204 1.0000000
## path:hsa04392 1.0000000
## path:hsa05330 1.0000000
## path:hsa05332 1.0000000
## path:hsa05150 1.0000000
## path:hsa04064 1.0000000# GO terms
gometh_go <- gometh(sig.cpg = sigCpGs_1k, all.cpg = all, collection = "GO" , prior.prob=TRUE)## All input CpGs are used for testing.gometh_go <- subset(gometh_go,DE>2)
gometh_go$FDR <- p.adjust(gometh_go$P.DE)
gometh_go <- gometh_go[order(gometh_go$P.DE),]
head( gometh_go , 20)## ONTOLOGY
## GO:0070273 MF
## GO:0007156 BP
## GO:0030674 MF
## GO:0046580 BP
## GO:0016339 BP
## GO:0032488 BP
## GO:0051058 BP
## GO:0016075 BP
## GO:0090482 MF
## GO:0032878 BP
## GO:0030247 MF
## GO:1901981 MF
## GO:0044458 BP
## GO:0070633 BP
## GO:0007265 BP
## GO:0034329 BP
## GO:0043087 BP
## GO:0071944 CC
## GO:0016264 BP
## GO:0002399 BP
## TERM
## GO:0070273 phosphatidylinositol-4-phosphate binding
## GO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules
## GO:0030674 protein-macromolecule adaptor activity
## GO:0046580 negative regulation of Ras protein signal transduction
## GO:0016339 calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules
## GO:0032488 Cdc42 protein signal transduction
## GO:0051058 negative regulation of small GTPase mediated signal transduction
## GO:0016075 rRNA catabolic process
## GO:0090482 vitamin transmembrane transporter activity
## GO:0032878 regulation of establishment or maintenance of cell polarity
## GO:0030247 polysaccharide binding
## GO:1901981 phosphatidylinositol phosphate binding
## GO:0044458 motile cilium assembly
## GO:0070633 transepithelial transport
## GO:0007265 Ras protein signal transduction
## GO:0034329 cell junction assembly
## GO:0043087 regulation of GTPase activity
## GO:0071944 cell periphery
## GO:0016264 gap junction assembly
## GO:0002399 MHC class II protein complex assembly
## N DE P.DE FDR
## GO:0070273 28 5 0.0006471222 1
## GO:0007156 162 12 0.0012293140 1
## GO:0030674 329 19 0.0014578420 1
## GO:0046580 48 6 0.0025440397 1
## GO:0016339 42 5 0.0032241392 1
## GO:0032488 14 3 0.0051592223 1
## GO:0051058 55 6 0.0054137969 1
## GO:0016075 21 3 0.0062402316 1
## GO:0090482 32 4 0.0064836888 1
## GO:0032878 28 4 0.0067859877 1
## GO:0030247 22 3 0.0076361290 1
## GO:1901981 170 11 0.0079738547 1
## GO:0044458 57 5 0.0091799789 1
## GO:0070633 32 4 0.0096587197 1
## GO:0007265 329 17 0.0102455852 1
## GO:0034329 404 21 0.0108980378 1
## GO:0043087 350 18 0.0112067929 1
## GO:0071944 5628 160 0.0112645442 1
## GO:0016264 16 3 0.0113013589 1
## GO:0002399 14 3 0.0142224171 1Now specifically analyse hypomethylated probes
res2 <- subset(res,b_X1<0)
sigCpGs_1k = res2$Name[1:1000]
sigCpGs_1k = as.character(sigCpGs_1k)
# kegg
gometh_kegg <- gometh(sig.cpg = sigCpGs_1k, all.cpg = all, collection = "KEGG", prior.prob=TRUE)## All input CpGs are used for testing.gometh_kegg <- subset(gometh_kegg,DE>2)
gometh_kegg$FDR <- p.adjust(gometh_kegg$P.DE)
gometh_kegg <- gometh_kegg[order(gometh_kegg$P.DE),]
head( gometh_kegg , 20)## Description N DE
## path:hsa05205 Proteoglycans in cancer 199 9
## path:hsa04940 Type I diabetes mellitus 41 3
## path:hsa04390 Hippo signaling pathway 154 7
## path:hsa05165 Human papillomavirus infection 314 11
## path:hsa05150 Staphylococcus aureus infection 88 3
## path:hsa05164 Influenza A 148 5
## path:hsa05321 Inflammatory bowel disease 61 3
## path:hsa05140 Leishmaniasis 70 3
## path:hsa04666 Fc gamma R-mediated phagocytosis 94 4
## path:hsa05152 Tuberculosis 163 5
## path:hsa04659 Th17 cell differentiation 103 4
## path:hsa04640 Hematopoietic cell lineage 91 3
## path:hsa04720 Long-term potentiation 64 3
## path:hsa04810 Regulation of actin cytoskeleton 218 7
## path:hsa04360 Axon guidance 175 7
## path:hsa04662 B cell receptor signaling pathway 79 3
## path:hsa05217 Basal cell carcinoma 63 3
## path:hsa04550 Signaling pathways regulating pluripotency of stem cells 138 5
## path:hsa04144 Endocytosis 242 7
## path:hsa04926 Relaxin signaling pathway 124 4
## P.DE FDR
## path:hsa05205 0.03768408 1
## path:hsa04940 0.06226364 1
## path:hsa04390 0.07617650 1
## path:hsa05165 0.08083395 1
## path:hsa05150 0.08614414 1
## path:hsa05164 0.09439391 1
## path:hsa05321 0.10338637 1
## path:hsa05140 0.12328869 1
## path:hsa04666 0.12395583 1
## path:hsa05152 0.13940395 1
## path:hsa04659 0.14208351 1
## path:hsa04640 0.14523317 1
## path:hsa04720 0.16062786 1
## path:hsa04810 0.16405604 1
## path:hsa04360 0.16804866 1
## path:hsa04662 0.17545232 1
## path:hsa05217 0.18787964 1
## path:hsa04550 0.20001165 1
## path:hsa04144 0.20839211 1
## path:hsa04926 0.26233504 1# GO terms
gometh_go <- gometh(sig.cpg = sigCpGs_1k, all.cpg = all, collection = "GO" , prior.prob=TRUE)## All input CpGs are used for testing.gometh_go <- subset(gometh_go,DE>2)
gometh_go$FDR <- p.adjust(gometh_go$P.DE)
gometh_go <- gometh_go[order(gometh_go$P.DE),]
head( gometh_go , 20)## ONTOLOGY
## GO:0015629 CC
## GO:0032963 BP
## GO:0050765 BP
## GO:0033631 BP
## GO:0035865 BP
## GO:0098927 BP
## GO:2000516 BP
## GO:0035864 BP
## GO:0043274 MF
## GO:0002286 BP
## GO:0016482 BP
## GO:0001725 CC
## GO:0097517 CC
## GO:0042093 BP
## GO:0002294 BP
## GO:0002287 BP
## GO:0002293 BP
## GO:0050852 BP
## GO:0005902 CC
## GO:0002292 BP
## TERM
## GO:0015629 actin cytoskeleton
## GO:0032963 collagen metabolic process
## GO:0050765 negative regulation of phagocytosis
## GO:0033631 cell-cell adhesion mediated by integrin
## GO:0035865 cellular response to potassium ion
## GO:0098927 vesicle-mediated transport between endosomal compartments
## GO:2000516 positive regulation of CD4-positive, alpha-beta T cell activation
## GO:0035864 response to potassium ion
## GO:0043274 phospholipase binding
## GO:0002286 T cell activation involved in immune response
## GO:0016482 cytosolic transport
## GO:0001725 stress fiber
## GO:0097517 contractile actin filament bundle
## GO:0042093 T-helper cell differentiation
## GO:0002294 CD4-positive, alpha-beta T cell differentiation involved in immune response
## GO:0002287 alpha-beta T cell activation involved in immune response
## GO:0002293 alpha-beta T cell differentiation involved in immune response
## GO:0050852 T cell receptor signaling pathway
## GO:0005902 microvillus
## GO:0002292 T cell differentiation involved in immune response
## N DE P.DE FDR
## GO:0015629 483 21 0.001622142 1
## GO:0032963 104 7 0.002083960 1
## GO:0050765 22 3 0.002744667 1
## GO:0033631 17 3 0.003027846 1
## GO:0035865 13 3 0.003451132 1
## GO:0098927 42 4 0.005965048 1
## GO:2000516 41 4 0.006072660 1
## GO:0035864 18 3 0.006549489 1
## GO:0043274 19 3 0.006555248 1
## GO:0002286 104 6 0.007724706 1
## GO:0016482 161 8 0.007903534 1
## GO:0001725 69 6 0.008046792 1
## GO:0097517 69 6 0.008046792 1
## GO:0042093 66 5 0.008132865 1
## GO:0002294 68 5 0.008520027 1
## GO:0002287 69 5 0.008936639 1
## GO:0002293 69 5 0.008936639 1
## GO:0050852 128 7 0.009006625 1
## GO:0005902 91 6 0.009242833 1
## GO:0002292 77 5 0.010875080 1Gene ontology of top DMPs LIMMA data
Gene Ontology analysis (gometh): top 1000 probes (limma data).
res <- read.csv("ASD_blood_top_dmps_onADOS_withintw_Nov27_limma.csv", header = TRUE)
sigCpGs_1k = res$Name[1:1000]
sigCpGs_1k = as.character(sigCpGs_1k)
all = res$Name
length(all)## [1] 802647# kegg
gometh_kegg <- gometh(sig.cpg = sigCpGs_1k, all.cpg = all, collection = "KEGG", prior.prob=TRUE)## All input CpGs are used for testing.gometh_kegg <- subset(gometh_kegg,DE>2)
gometh_kegg$FDR <- p.adjust(gometh_kegg$P.DE)
gometh_kegg <- gometh_kegg[order(gometh_kegg$P.DE),]
head( gometh_kegg , 20)## Description N DE
## path:hsa04014 Ras signaling pathway 227 12
## path:hsa05032 Morphine addiction 88 6
## path:hsa04961 Endocrine and other factor-regulated calcium reabsorption 51 4
## path:hsa04972 Pancreatic secretion 93 5
## path:hsa04730 Long-term depression 58 4
## path:hsa04510 Focal adhesion 193 9
## path:hsa04727 GABAergic synapse 84 5
## path:hsa04211 Longevity regulating pathway 88 5
## path:hsa04913 Ovarian steroidogenesis 50 3
## path:hsa04910 Insulin signaling pathway 131 6
## path:hsa05217 Basal cell carcinoma 63 4
## path:hsa04010 MAPK signaling pathway 283 11
## path:hsa03010 Ribosome 125 4
## path:hsa04144 Endocytosis 242 9
## path:hsa05214 Glioma 74 4
## path:hsa04146 Peroxisome 80 3
## path:hsa04928 Parathyroid hormone synthesis, secretion and action 105 5
## path:hsa05410 Hypertrophic cardiomyopathy 87 4
## path:hsa05200 Pathways in cancer 507 16
## path:hsa04370 VEGF signaling pathway 59 3
## P.DE FDR
## path:hsa04014 0.01012478 1
## path:hsa05032 0.03805016 1
## path:hsa04961 0.03876623 1
## path:hsa04972 0.04524703 1
## path:hsa04730 0.06423774 1
## path:hsa04510 0.07182263 1
## path:hsa04727 0.07270287 1
## path:hsa04211 0.07552161 1
## path:hsa04913 0.08780402 1
## path:hsa04910 0.08917068 1
## path:hsa05217 0.09292473 1
## path:hsa04010 0.10411894 1
## path:hsa03010 0.10761688 1
## path:hsa04144 0.12065903 1
## path:hsa05214 0.13356577 1
## path:hsa04146 0.15376245 1
## path:hsa04928 0.16048829 1
## path:hsa05410 0.16754660 1
## path:hsa05200 0.16941726 1
## path:hsa04370 0.17199935 1# GO terms
gometh_go <- gometh(sig.cpg = sigCpGs_1k, all.cpg = all, collection = "GO" , prior.prob=TRUE)## All input CpGs are used for testing.gometh_go <- subset(gometh_go,DE>2)
gometh_go$FDR <- p.adjust(gometh_go$P.DE)
gometh_go <- gometh_go[order(gometh_go$P.DE),]
head( gometh_go , 20)## ONTOLOGY TERM N DE
## GO:0021517 BP ventral spinal cord development 45 8
## GO:0060737 BP prostate gland morphogenetic growth 4 3
## GO:0048663 BP neuron fate commitment 68 8
## GO:0007442 BP hindgut morphogenesis 7 3
## GO:0061525 BP hindgut development 8 3
## GO:0048665 BP neuron fate specification 32 5
## GO:0046886 BP positive regulation of hormone biosynthetic process 10 3
## GO:0021515 BP cell differentiation in spinal cord 49 6
## GO:0001708 BP cell fate specification 106 9
## GO:0032331 BP negative regulation of chondrocyte differentiation 24 4
## GO:0060736 BP prostate gland growth 11 3
## GO:0030500 BP regulation of bone mineralization 78 7
## GO:0021510 BP spinal cord development 96 8
## GO:0034707 CC chloride channel complex 47 5
## GO:0061037 BP negative regulation of cartilage development 31 4
## GO:0032352 BP positive regulation of hormone metabolic process 15 3
## GO:0030501 BP positive regulation of bone mineralization 44 5
## GO:0045669 BP positive regulation of osteoblast differentiation 72 6
## GO:0046838 BP phosphorylated carbohydrate dephosphorylation 16 3
## GO:0046855 BP inositol phosphate dephosphorylation 16 3
## P.DE FDR
## GO:0021517 3.474954e-05 0.07439876
## GO:0060737 2.378608e-04 0.50902211
## GO:0048663 8.888333e-04 1.00000000
## GO:0007442 1.151578e-03 1.00000000
## GO:0061525 1.507930e-03 1.00000000
## GO:0048665 1.974523e-03 1.00000000
## GO:0046886 2.016502e-03 1.00000000
## GO:0021515 2.680779e-03 1.00000000
## GO:0001708 2.816731e-03 1.00000000
## GO:0032331 2.942491e-03 1.00000000
## GO:0060736 3.132615e-03 1.00000000
## GO:0030500 3.197208e-03 1.00000000
## GO:0021510 4.082889e-03 1.00000000
## GO:0034707 4.354545e-03 1.00000000
## GO:0061037 6.182382e-03 1.00000000
## GO:0032352 6.672936e-03 1.00000000
## GO:0030501 6.697879e-03 1.00000000
## GO:0045669 6.786616e-03 1.00000000
## GO:0046838 6.825306e-03 1.00000000
## GO:0046855 6.825306e-03 1.00000000Now specifically analyse hypermethylated probes
res2 <- subset(res,logFC>0)
sigCpGs_1k = res2$Name[1:1000]
sigCpGs_1k = as.character(sigCpGs_1k)
# kegg
gometh_kegg <- gometh(sig.cpg = sigCpGs_1k, all.cpg = all, collection = "KEGG", prior.prob=TRUE)## All input CpGs are used for testing.gometh_kegg <- subset(gometh_kegg,DE>2)
gometh_kegg$FDR <- p.adjust(gometh_kegg$P.DE)
gometh_kegg <- gometh_kegg[order(gometh_kegg$P.DE),]
head( gometh_kegg , 20)## Description N DE P.DE FDR
## path:hsa05217 Basal cell carcinoma 63 6 0.007936806 0.7539965
## path:hsa04724 Glutamatergic synapse 113 7 0.037227553 1.0000000
## path:hsa05226 Gastric cancer 147 8 0.047547380 1.0000000
## path:hsa05010 Alzheimer disease 354 13 0.068589630 1.0000000
## path:hsa05203 Viral carcinogenesis 186 8 0.078272105 1.0000000
## path:hsa04146 Peroxisome 80 4 0.082025868 1.0000000
## path:hsa04725 Cholinergic synapse 111 6 0.085039965 1.0000000
## path:hsa04922 Glucagon signaling pathway 99 5 0.085663853 1.0000000
## path:hsa04720 Long-term potentiation 64 4 0.086951121 1.0000000
## path:hsa05031 Amphetamine addiction 66 4 0.098916658 1.0000000
## path:hsa05224 Breast cancer 145 7 0.105642228 1.0000000
## path:hsa04726 Serotonergic synapse 108 5 0.114485333 1.0000000
## path:hsa04723 Retrograde endocannabinoid signaling 133 6 0.114783976 1.0000000
## path:hsa04934 Cushing syndrome 154 7 0.119861293 1.0000000
## path:hsa04728 Dopaminergic synapse 128 6 0.122057131 1.0000000
## path:hsa04916 Melanogenesis 101 5 0.125421727 1.0000000
## path:hsa04713 Circadian entrainment 96 5 0.131522946 1.0000000
## path:hsa04721 Synaptic vesicle cycle 78 4 0.133458020 1.0000000
## path:hsa05034 Alcoholism 164 6 0.144276795 1.0000000
## path:hsa05200 Pathways in cancer 507 17 0.147164900 1.0000000# GO terms
gometh_go <- gometh(sig.cpg = sigCpGs_1k, all.cpg = all, collection = "GO" , prior.prob=TRUE)## All input CpGs are used for testing.gometh_go <- subset(gometh_go,DE>2)
gometh_go$FDR <- p.adjust(gometh_go$P.DE)
gometh_go <- gometh_go[order(gometh_go$P.DE),]
head( gometh_go , 20)## ONTOLOGY TERM N DE
## GO:0060174 BP limb bud formation 11 4
## GO:0021871 BP forebrain regionalization 24 5
## GO:0072089 BP stem cell proliferation 118 10
## GO:0043010 BP camera-type eye development 332 19
## GO:0030277 BP maintenance of gastrointestinal epithelium 21 4
## GO:0060534 BP trachea cartilage development 7 3
## GO:0035116 BP embryonic hindlimb morphogenesis 27 5
## GO:0060438 BP trachea development 18 4
## GO:0001654 BP eye development 378 20
## GO:0150063 BP visual system development 382 20
## GO:0035107 BP appendage morphogenesis 139 11
## GO:0035108 BP limb morphogenesis 139 11
## GO:0048880 BP sensory system development 388 20
## GO:0032331 BP negative regulation of chondrocyte differentiation 24 4
## GO:0035137 BP hindlimb morphogenesis 34 5
## GO:0051645 BP Golgi localization 14 3
## GO:0010669 BP epithelial structure maintenance 31 4
## GO:0072091 BP regulation of stem cell proliferation 87 7
## GO:0061037 BP negative regulation of cartilage development 31 4
## GO:0030326 BP embryonic limb morphogenesis 117 9
## P.DE FDR
## GO:0060174 0.0002571608 0.5513527
## GO:0021871 0.0005460296 1.0000000
## GO:0072089 0.0008837449 1.0000000
## GO:0043010 0.0010567651 1.0000000
## GO:0030277 0.0011398149 1.0000000
## GO:0060534 0.0011693516 1.0000000
## GO:0035116 0.0014232136 1.0000000
## GO:0060438 0.0019021249 1.0000000
## GO:0001654 0.0020140441 1.0000000
## GO:0150063 0.0022160588 1.0000000
## GO:0035107 0.0025822763 1.0000000
## GO:0035108 0.0025822763 1.0000000
## GO:0048880 0.0027751494 1.0000000
## GO:0032331 0.0032666589 1.0000000
## GO:0035137 0.0040251255 1.0000000
## GO:0051645 0.0048226544 1.0000000
## GO:0010669 0.0055689931 1.0000000
## GO:0072091 0.0059494301 1.0000000
## GO:0061037 0.0073840197 1.0000000
## GO:0030326 0.0075887543 1.0000000Now specifically analyse hypomethylated probes
res2 <- subset(res,logFC<0)
sigCpGs_1k = res2$Name[1:1000]
sigCpGs_1k = as.character(sigCpGs_1k)
# kegg
gometh_kegg <- gometh(sig.cpg = sigCpGs_1k, all.cpg = all, collection = "KEGG", prior.prob=TRUE)## All input CpGs are used for testing.gometh_kegg <- subset(gometh_kegg,DE>2)
gometh_kegg$FDR <- p.adjust(gometh_kegg$P.DE)
gometh_kegg <- gometh_kegg[order(gometh_kegg$P.DE),]
head( gometh_kegg , 20)## Description N DE
## path:hsa00514 Other types of O-glycan biosynthesis 43 4
## path:hsa00512 Mucin type O-glycan biosynthesis 33 3
## path:hsa05410 Hypertrophic cardiomyopathy 87 5
## path:hsa04730 Long-term depression 58 4
## path:hsa04510 Focal adhesion 193 9
## path:hsa04940 Type I diabetes mellitus 41 3
## path:hsa05414 Dilated cardiomyopathy 92 5
## path:hsa04925 Aldosterone synthesis and secretion 95 5
## path:hsa05214 Glioma 74 4
## path:hsa04961 Endocrine and other factor-regulated calcium reabsorption 51 3
## path:hsa05412 Arrhythmogenic right ventricular cardiomyopathy 74 4
## path:hsa04928 Parathyroid hormone synthesis, secretion and action 105 5
## path:hsa04070 Phosphatidylinositol signaling system 92 4
## path:hsa05416 Viral myocarditis 55 3
## path:hsa04666 Fc gamma R-mediated phagocytosis 94 4
## path:hsa04910 Insulin signaling pathway 131 5
## path:hsa01521 EGFR tyrosine kinase inhibitor resistance 77 4
## path:hsa04152 AMPK signaling pathway 118 5
## path:hsa04211 Longevity regulating pathway 88 4
## path:hsa00562 Inositol phosphate metabolism 69 3
## P.DE FDR
## path:hsa00514 0.01802218 1
## path:hsa00512 0.03744461 1
## path:hsa05410 0.05245975 1
## path:hsa04730 0.05446728 1
## path:hsa04510 0.05676267 1
## path:hsa04940 0.07639650 1
## path:hsa05414 0.07800339 1
## path:hsa04925 0.09435944 1
## path:hsa05214 0.11730543 1
## path:hsa04961 0.12054996 1
## path:hsa05412 0.13846347 1
## path:hsa04928 0.14157058 1
## path:hsa04070 0.15842218 1
## path:hsa05416 0.15871579 1
## path:hsa04666 0.16071219 1
## path:hsa04910 0.16108506 1
## path:hsa01521 0.16129886 1
## path:hsa04152 0.16186717 1
## path:hsa04211 0.16593321 1
## path:hsa00562 0.17425390 1# GO terms
gometh_go <- gometh(sig.cpg = sigCpGs_1k, all.cpg = all, collection = "GO" , prior.prob=TRUE)## All input CpGs are used for testing.gometh_go <- subset(gometh_go,DE>2)
gometh_go$FDR <- p.adjust(gometh_go$P.DE)
gometh_go <- gometh_go[order(gometh_go$P.DE),]
head( gometh_go , 20)## ONTOLOGY
## GO:0021517 BP
## GO:0021514 BP
## GO:0018243 BP
## GO:0018242 BP
## GO:0043005 CC
## GO:0120025 CC
## GO:0030246 MF
## GO:0086012 BP
## GO:0014909 BP
## GO:0072578 BP
## GO:0007155 BP
## GO:0098609 BP
## GO:0014812 BP
## GO:0042995 CC
## GO:0035902 BP
## GO:0014910 BP
## GO:1903034 BP
## GO:0030673 CC
## GO:0000421 CC
## GO:0004698 MF
## TERM
## GO:0021517 ventral spinal cord development
## GO:0021514 ventral spinal cord interneuron differentiation
## GO:0018243 protein O-linked glycosylation via threonine
## GO:0018242 protein O-linked glycosylation via serine
## GO:0043005 neuron projection
## GO:0120025 plasma membrane bounded cell projection
## GO:0030246 carbohydrate binding
## GO:0086012 membrane depolarization during cardiac muscle cell action potential
## GO:0014909 smooth muscle cell migration
## GO:0072578 neurotransmitter-gated ion channel clustering
## GO:0007155 cell adhesion
## GO:0098609 cell-cell adhesion
## GO:0014812 muscle cell migration
## GO:0042995 cell projection
## GO:0035902 response to immobilization stress
## GO:0014910 regulation of smooth muscle cell migration
## GO:1903034 regulation of response to wounding
## GO:0030673 axolemma
## GO:0000421 autophagosome membrane
## GO:0004698 calcium-dependent protein kinase C activity
## N DE P.DE FDR
## GO:0021517 45 7 0.0002218469 0.4487964
## GO:0021514 13 4 0.0005719642 1.0000000
## GO:0018243 9 3 0.0010339036 1.0000000
## GO:0018242 10 3 0.0011885888 1.0000000
## GO:0043005 1302 46 0.0022527465 1.0000000
## GO:0120025 2147 64 0.0025986674 1.0000000
## GO:0030246 258 11 0.0027469189 1.0000000
## GO:0086012 22 4 0.0034792561 1.0000000
## GO:0014909 86 7 0.0037678008 1.0000000
## GO:0072578 15 3 0.0051132533 1.0000000
## GO:0007155 1469 46 0.0061521337 1.0000000
## GO:0098609 913 31 0.0069355539 1.0000000
## GO:0014812 99 7 0.0074491616 1.0000000
## GO:0042995 2255 64 0.0080472667 1.0000000
## GO:0035902 19 3 0.0091754251 1.0000000
## GO:0014910 78 6 0.0092232058 1.0000000
## GO:1903034 165 9 0.0093746224 1.0000000
## GO:0030673 14 3 0.0103412021 1.0000000
## GO:0000421 49 4 0.0107206063 1.0000000
## GO:0004698 16 3 0.0107350767 1.0000000DMRCate - differentially methylated region analysis
#design matrix in regression
design_tw <- model.matrix(~ADOS+Twin_Group)
design_tw_dmrc <- model.matrix(~ADOS)
#myannotation <- cpg.annotate("array", mDat, analysis.type="differential", design=design_tw, coef=2, fdr=1)
myannotation <- cpg.annotate("array", mDat, what = "M",
arraytype = "EPIC", analysis.type="differential", design_tw, coef=2)## Your contrast returned no individually significant probes. Try increasing the fdr. Alternatively, set pcutoff manually in dmrcate() to return DMRs, but be warned there is an increased risk of Type I errors.dmrcoutput <- dmrcate(myannotation, lambda=1000, C=2, pcutoff=0.001)## Fitting chr1...## Fitting chr2...## Fitting chr3...## Fitting chr4...## Fitting chr5...## Fitting chr6...## Fitting chr7...## Fitting chr8...## Fitting chr9...## Fitting chr10...## Fitting chr11...## Fitting chr12...## Fitting chr13...## Fitting chr14...## Fitting chr15...## Fitting chr16...## Fitting chr17...## Fitting chr18...## Fitting chr19...## Fitting chr20...## Fitting chr21...## Fitting chr22...## Demarcating regions...## Done!results.ranges <- data.frame(extractRanges(dmrcoutput, genome = "hg19") )## snapshotDate(): 2022-10-31## see ?DMRcatedata and browseVignettes('DMRcatedata') for documentation## loading from cachehead(results.ranges, 20)## seqnames start end width strand no.cpgs min_smoothed_fdr Stouffer
## 1 chr7 143746413 143746594 182 * 2 0.0003779910 0.9491839
## 2 chr11 125479352 125479362 11 * 2 0.0003779910 0.9491839
## 3 chr13 66437490 66437506 17 * 2 0.0008880616 0.9491839
## 4 chr1 4794912 4795114 203 * 3 0.0003779910 0.9775130
## 5 chr6 28945189 28945507 319 * 7 0.0003779910 0.9994569
## 6 chr19 12834767 12835206 440 * 8 0.0003779910 0.9999513
## HMFDR Fisher maxdiff meandiff overlapping.genes
## 1 0.8764716 0.9707790 -0.005090061 -0.003658126 <NA>
## 2 0.8764716 0.9707790 0.008347445 0.001441863 STT3A
## 3 0.8764716 0.9707790 -0.006440248 -0.004821590 <NA>
## 4 0.8764716 0.9923100 -0.009478235 -0.005155469 AJAP1
## 5 0.8869317 0.9999725 -0.006123642 -0.003685261 RN7SL471P
## 6 0.9017439 0.9999975 -0.007879880 -0.001744387 TNPO2write.csv(results.ranges, file = "dmrcoutput.csv", row.names = TRUE)Session information
sessionInfo()## R version 4.2.2 Patched (2022-11-10 r83330)
## Platform: x86_64-pc-linux-gnu (64-bit)
## Running under: Ubuntu 22.04.1 LTS
##
## Matrix products: default
## BLAS: /usr/lib/x86_64-linux-gnu/blas/libblas.so.3.10.0
## LAPACK: /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3.10.0
##
## locale:
## [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
## [3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8
## [5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8
## [7] LC_PAPER=en_US.UTF-8 LC_NAME=C
## [9] LC_ADDRESS=C LC_TELEPHONE=C
## [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
##
## attached base packages:
## [1] parallel stats4 stats graphics grDevices utils datasets
## [8] methods base
##
## other attached packages:
## [1] DMRcatedata_2.16.0
## [2] IlluminaHumanMethylation450kmanifest_0.4.0
## [3] IlluminaHumanMethylationEPICmanifest_0.3.0
## [4] kableExtra_1.3.4
## [5] mitch_1.10.0
## [6] FlowSorted.Blood.EPIC_2.2.0
## [7] ExperimentHub_2.6.0
## [8] AnnotationHub_3.6.0
## [9] BiocFileCache_2.6.0
## [10] dbplyr_2.3.0
## [11] DMRcate_2.12.0
## [12] ggplot2_3.4.0
## [13] reshape2_1.4.4
## [14] FlowSorted.Blood.450k_1.36.0
## [15] WGCNA_1.72-1
## [16] fastcluster_1.2.3
## [17] dynamicTreeCut_1.63-1
## [18] gplots_3.1.3
## [19] RColorBrewer_1.1-3
## [20] ruv_0.9.7.1
## [21] IlluminaHumanMethylationEPICanno.ilm10b2.hg19_0.6.0
## [22] limma_3.54.0
## [23] missMethyl_1.32.0
## [24] IlluminaHumanMethylationEPICanno.ilm10b4.hg19_0.6.0
## [25] IlluminaHumanMethylation450kanno.ilmn12.hg19_0.6.1
## [26] minfi_1.44.0
## [27] bumphunter_1.40.0
## [28] locfit_1.5-9.7
## [29] iterators_1.0.14
## [30] foreach_1.5.2
## [31] Biostrings_2.66.0
## [32] XVector_0.38.0
## [33] SummarizedExperiment_1.28.0
## [34] Biobase_2.58.0
## [35] MatrixGenerics_1.10.0
## [36] matrixStats_0.63.0
## [37] GenomicRanges_1.50.2
## [38] GenomeInfoDb_1.34.6
## [39] IRanges_2.32.0
## [40] S4Vectors_0.36.1
## [41] BiocGenerics_0.44.0
##
## loaded via a namespace (and not attached):
## [1] rappdirs_0.3.3 rtracklayer_1.58.0
## [3] GGally_2.1.2 R.methodsS3_1.8.2
## [5] tidyr_1.2.1 bit64_4.0.5
## [7] knitr_1.41 DelayedArray_0.24.0
## [9] R.utils_2.12.2 data.table_1.14.6
## [11] rpart_4.1.19 KEGGREST_1.38.0
## [13] RCurl_1.98-1.9 GEOquery_2.66.0
## [15] AnnotationFilter_1.22.0 doParallel_1.0.17
## [17] generics_0.1.3 GenomicFeatures_1.50.3
## [19] preprocessCore_1.60.1 RSQLite_2.2.20
## [21] bit_4.0.5 tzdb_0.3.0
## [23] webshot_0.5.4 xml2_1.3.3
## [25] httpuv_1.6.8 assertthat_0.2.1
## [27] xfun_0.36 hms_1.1.2
## [29] jquerylib_0.1.4 evaluate_0.20
## [31] promises_1.2.0.1 fansi_1.0.3
## [33] restfulr_0.0.15 scrime_1.3.5
## [35] progress_1.2.2 readxl_1.4.1
## [37] caTools_1.18.2 DBI_1.1.3
## [39] htmlwidgets_1.6.1 reshape_0.8.9
## [41] purrr_1.0.1 ellipsis_0.3.2
## [43] dplyr_1.0.10 backports_1.4.1
## [45] permute_0.9-7 annotate_1.76.0
## [47] biomaRt_2.54.0 deldir_1.0-6
## [49] sparseMatrixStats_1.10.0 vctrs_0.5.1
## [51] ensembldb_2.22.0 cachem_1.0.6
## [53] withr_2.5.0 Gviz_1.42.0
## [55] BSgenome_1.66.2 checkmate_2.1.0
## [57] GenomicAlignments_1.34.0 prettyunits_1.1.1
## [59] mclust_6.0.0 svglite_2.1.1
## [61] cluster_2.1.4 lazyeval_0.2.2
## [63] crayon_1.5.2 genefilter_1.80.2
## [65] labeling_0.4.2 edgeR_3.40.1
## [67] pkgconfig_2.0.3 nlme_3.1-161
## [69] ProtGenerics_1.30.0 nnet_7.3-18
## [71] rlang_1.0.6 lifecycle_1.0.3
## [73] filelock_1.0.2 dichromat_2.0-0.1
## [75] cellranger_1.1.0 rngtools_1.5.2
## [77] base64_2.0.1 Matrix_1.5-3
## [79] Rhdf5lib_1.20.0 base64enc_0.1-3
## [81] beeswarm_0.4.0 viridisLite_0.4.1
## [83] png_0.1-8 rjson_0.2.21
## [85] bitops_1.0-7 R.oo_1.25.0
## [87] KernSmooth_2.23-20 rhdf5filters_1.10.0
## [89] blob_1.2.3 DelayedMatrixStats_1.20.0
## [91] doRNG_1.8.6 stringr_1.5.0
## [93] nor1mix_1.3-0 readr_2.1.3
## [95] jpeg_0.1-10 scales_1.2.1
## [97] memoise_2.0.1 magrittr_2.0.3
## [99] plyr_1.8.8 zlibbioc_1.44.0
## [101] compiler_4.2.2 BiocIO_1.8.0
## [103] illuminaio_0.40.0 Rsamtools_2.14.0
## [105] cli_3.6.0 DSS_2.46.0
## [107] htmlTable_2.4.1 Formula_1.2-4
## [109] MASS_7.3-58.1 tidyselect_1.2.0
## [111] stringi_1.7.12 highr_0.10
## [113] yaml_2.3.6 askpass_1.1
## [115] latticeExtra_0.6-30 grid_4.2.2
## [117] sass_0.4.4 VariantAnnotation_1.44.0
## [119] tools_4.2.2 rstudioapi_0.14
## [121] foreign_0.8-84 bsseq_1.34.0
## [123] gridExtra_2.3 farver_2.1.1
## [125] digest_0.6.31 BiocManager_1.30.19
## [127] shiny_1.7.4 quadprog_1.5-8
## [129] Rcpp_1.0.9 siggenes_1.72.0
## [131] BiocVersion_3.16.0 later_1.3.0
## [133] org.Hs.eg.db_3.16.0 httr_1.4.4
## [135] AnnotationDbi_1.60.0 biovizBase_1.46.0
## [137] colorspace_2.0-3 rvest_1.0.3
## [139] XML_3.99-0.13 splines_4.2.2
## [141] statmod_1.5.0 multtest_2.54.0
## [143] systemfonts_1.0.4 xtable_1.8-4
## [145] jsonlite_1.8.4 R6_2.5.1
## [147] echarts4r_0.4.4 Hmisc_4.7-2
## [149] pillar_1.8.1 htmltools_0.5.4
## [151] mime_0.12 glue_1.6.2
## [153] fastmap_1.1.0 BiocParallel_1.32.5
## [155] interactiveDisplayBase_1.36.0 beanplot_1.3.1
## [157] codetools_0.2-18 utf8_1.2.2
## [159] lattice_0.20-45 bslib_0.4.2
## [161] tibble_3.1.8 BiasedUrn_2.0.8
## [163] curl_5.0.0 gtools_3.9.4
## [165] GO.db_3.16.0 openssl_2.0.5
## [167] interp_1.1-3 survival_3.5-0
## [169] rmarkdown_2.19 munsell_0.5.0
## [171] rhdf5_2.42.0 GenomeInfoDbData_1.2.9
## [173] HDF5Array_1.26.0 impute_1.72.2
## [175] gtable_0.3.1