Sample	total_passed	total_failed	secondary_passed	secondary_failed	supplementary_passed	supplementary_failed	duplicates_passed	duplicates_failed	mapped_passed	mapped_failed	mapped_passed_pct	mapped_failed_pct	paired in sequencing_passed	paired in sequencing_failed	read1_passed	read1_failed	read2_passed	read2_failed	properly paired_passed	properly paired_failed	properly paired_passed_pct	properly paired_failed_pct	with itself and mate mapped_passed	with itself and mate mapped_failed	singletons_passed	singletons_failed	singletons_passed_pct	singletons_failed_pct	with mate mapped to a different chr_passed	with mate mapped to a different chr_failed	with mate mapped to a different chr (mapQ >= 5)_passed	with mate mapped to a different chr (mapQ >= 5)_failed	flagstat_total
AD-pos_mRNA	999762	0	0	0	0	0	0	0	30382	0	3.04	nan	0	0	0	0	0	0	0	0	nan	nan	0	0	0	0	nan	nan	0	0	0	0	999762
AD-pre_mRNA	999793	0	0	0	0	0	0	0	26360	0	2.64	nan	0	0	0	0	0	0	0	0	nan	nan	0	0	0	0	nan	nan	0	0	0	0	999793
AKH-pos_mRNA	999783	0	0	0	0	0	0	0	30625	0	3.06	nan	0	0	0	0	0	0	0	0	nan	nan	0	0	0	0	nan	nan	0	0	0	0	999783
AKH-pre_mRNA	999840	0	0	0	0	0	0	0	11591	0	1.16	nan	0	0	0	0	0	0	0	0	nan	nan	0	0	0	0	nan	nan	0	0	0	0	999840
AY-pos_mRNA	999781	0	0	0	0	0	0	0	17151	0	1.72	nan	0	0	0	0	0	0	0	0	nan	nan	0	0	0	0	nan	nan	0	0	0	0	999781
AY-pre_mRNA	999726	0	0	0	0	0	0	0	10016	0	1.0	nan	0	0	0	0	0	0	0	0	nan	nan	0	0	0	0	nan	nan	0	0	0	0	999726
RH-pos_mRNA	999782	0	0	0	0	0	0	0	15118	0	1.51	nan	0	0	0	0	0	0	0	0	nan	nan	0	0	0	0	nan	nan	0	0	0	0	999782
RH-pre_mRNA	999757	0	0	0	0	0	0	0	11333	0	1.13	nan	0	0	0	0	0	0	0	0	nan	nan	0	0	0	0	nan	nan	0	0	0	0	999757
SB-pos_mRNA	999770	0	0	0	0	0	0	0	15370	0	1.54	nan	0	0	0	0	0	0	0	0	nan	nan	0	0	0	0	nan	nan	0	0	0	0	999770
SB-pre_mRNA	999718	0	0	0	0	0	0	0	12044	0	1.2	nan	0	0	0	0	0	0	0	0	nan	nan	0	0	0	0	nan	nan	0	0	0	0	999718
ST-pos_mRNA	999774	0	0	0	0	0	0	0	26766	0	2.68	nan	0	0	0	0	0	0	0	0	nan	nan	0	0	0	0	nan	nan	0	0	0	0	999774
ST-pre_mRNA	999724	0	0	0	0	0	0	0	10498	0	1.05	nan	0	0	0	0	0	0	0	0	nan	nan	0	0	0	0	nan	nan	0	0	0	0	999724