Source: https://github.com/markziemann/GeneNameErrors2020

View the reports: http://ziemann-lab.net/public/gene_name_errors/

Intro

Gene name errors result when data are imported improperly into MS Excel and other spreadsheet programs (Zeeberg et al, 2004). Certain gene names like MARCH3, SEPT2 and DEC1 are converted into date format. These errors are surprisingly common in supplementary data files in the field of genomics (Ziemann et al, 2016). This could be considered a small error because it only affects a small number of genes, however it is symptomtic of poor data processing methods. The purpose of this script is to identify gene name errors present in supplementary files of PubMed Central articles in the previous month.

library("XML")
library("jsonlite")
library("xml2")
library("reutils")
library("readxl")
library("RCurl")

Get PMC IDs

Here I will be getting PubMed Central IDs for the previous month.

Start with figuring out the date to search PubMed Central.

CURRENT_MONTH=format(Sys.time(), "%m")
CURRENT_YEAR=format(Sys.time(), "%Y")

if (CURRENT_MONTH == "01") {
  PREV_YEAR=as.character(as.numeric(format(Sys.time(), "%Y"))-1)
  PREV_MONTH="12"
} else {
  PREV_YEAR=CURRENT_YEAR
  PREV_MONTH=as.character(as.numeric(format(Sys.time(), "%m"))-1)
}

DATE=paste(PREV_YEAR,"/",PREV_MONTH,sep="")
DATE
## [1] "2023/3"

Let’s see how many PMC IDs we have in the past month.

QUERY ='((genom*[Abstract]))'

ESEARCH_RES <- esearch(term=QUERY, db = "pmc", rettype = "uilist", retmode = "xml", retstart = 0, 
  retmax = 5000000, usehistory = TRUE, webenv = NULL, querykey = NULL, sort = NULL, field = NULL, 
  datetype = NULL, reldate = NULL, 
  mindate = paste(DATE,"/1",sep="") , maxdate = paste(DATE,"/31",sep=""))

pmc <- efetch(ESEARCH_RES,retmode="text",rettype="uilist",outfile="pmcids.txt")
## Retrieving UIDs 1 to 500
## Retrieving UIDs 501 to 1000
## Retrieving UIDs 1001 to 1500
## Retrieving UIDs 1501 to 2000
## Retrieving UIDs 2001 to 2500
## Retrieving UIDs 2501 to 3000
## Retrieving UIDs 3001 to 3500
pmc <- read.table(pmc)
pmc <- paste("PMC",pmc$V1,sep="")
NUM_ARTICLES=length(pmc)
NUM_ARTICLES
## [1] 3417
writeLines(pmc,con="pmc.txt")

Run the screen

Now run the bash script. Note that false positives can occur (~1.5%) and these results have not been verified by a human.

Here are some definitions:

  • NUM_XLS = Number of supplementary Excel files in this set of PMC articles.

  • NUM_XLS_ARTICLES = Number of articles matching the PubMed Central search which have supplementary Excel files.

  • GENELISTS = The gene lists found in the Excel files. Each Excel file is counted once even it has multiple gene lists.

  • NUM_GENELISTS = The number of Excel files with gene lists.

  • NUM_GENELIST_ARTICLES = The number of PMC articles with supplementary Excel gene lists.

  • ERROR_GENELISTS = Files suspected to contain gene name errors. The dates and five-digit numbers indicate transmogrified gene names.

  • NUM_ERROR_GENELISTS = Number of Excel gene lists with errors.

  • NUM_ERROR_GENELIST_ARTICLES = Number of articles with supplementary Excel gene name errors.

  • ERROR_PROPORTION = This is the proportion of articles with Excel gene lists that have errors.

system("./gene_names.sh pmc.txt")
results <- readLines("results.txt")

XLS <- results[grep("XLS",results,ignore.case=TRUE)]
NUM_XLS = length(XLS)
NUM_XLS
## [1] 4658
NUM_XLS_ARTICLES = length(unique(sapply(strsplit(XLS," "),"[[",1)))
NUM_XLS_ARTICLES
## [1] 887
GENELISTS <- XLS[lapply(strsplit(XLS," "),length)>2]
#GENELISTS

NUM_GENELISTS <- length(unique(sapply(strsplit(GENELISTS," "),"[[",2)))
NUM_GENELISTS
## [1] 545
NUM_GENELIST_ARTICLES <- length(unique(sapply(strsplit(GENELISTS," "),"[[",1)))
NUM_GENELIST_ARTICLES
## [1] 293
ERROR_GENELISTS <- XLS[lapply(strsplit(XLS," "),length)>3]
#ERROR_GENELISTS

NUM_ERROR_GENELISTS = length(ERROR_GENELISTS)
NUM_ERROR_GENELISTS
## [1] 260
GENELIST_ERROR_ARTICLES <- unique(sapply(strsplit(ERROR_GENELISTS," "),"[[",1))
GENELIST_ERROR_ARTICLES
##  [1] "PMC10040137" "PMC10039465" "PMC10037080" "PMC10036921" "PMC10034058"
##  [6] "PMC10033906" "PMC10033451" "PMC10028295" "PMC10028223" "PMC10027475"
## [11] "PMC10022859" "PMC10022277" "PMC10022194" "PMC10017747" "PMC10016690"
## [16] "PMC10016662" "PMC10010668" "PMC10009272" "PMC10008571" "PMC10005326"
## [21] "PMC10005268" "PMC10002577" "PMC10000440" "PMC10000302" "PMC9997660" 
## [26] "PMC9984532"  "PMC9983314"  "PMC9981464"  "PMC9981200"  "PMC9980695" 
## [31] "PMC9980301"  "PMC9977441"  "PMC9977313"  "PMC9975319"  "PMC9972295" 
## [36] "PMC10045015" "PMC10043811" "PMC10041653" "PMC10035230" "PMC10033758"
## [41] "PMC10033677" "PMC10033585" "PMC10028083" "PMC10028036" "PMC10027880"
## [46] "PMC10025971" "PMC10025435" "PMC10025395" "PMC10022665" "PMC10020157"
## [51] "PMC10014956" "PMC10014730" "PMC10012531" "PMC10011742" "PMC10011429"
## [56] "PMC10011141" "PMC10011137" "PMC10011132" "PMC10010006" "PMC10008496"
## [61] "PMC10003012" "PMC10002421" "PMC9998611"  "PMC9998435"  "PMC9998083" 
## [66] "PMC9997923"  "PMC9996951"  "PMC9995926"  "PMC9995291"  "PMC9982299" 
## [71] "PMC9981717"  "PMC9981215"  "PMC9978639"  "PMC9978323"  "PMC9977725" 
## [76] "PMC9977003"  "PMC9975292"  "PMC9975158"  "PMC9972178"
NUM_ERROR_GENELIST_ARTICLES <- length(GENELIST_ERROR_ARTICLES) 
NUM_ERROR_GENELIST_ARTICLES
## [1] 79
ERROR_PROPORTION = NUM_ERROR_GENELIST_ARTICLES / NUM_GENELIST_ARTICLES
ERROR_PROPORTION
## [1] 0.2696246

Look at the errors detected

Here you can have a look at all the gene lists detected in the past month, as well as those with errors. The dates are obvious errors, these are commonly dates in September, March, December and October. The five-digit numbers represent dates as they are encoded in the Excel internal format. The five digit number is the number of days since 1900. If you were to take these numbers and put them into Excel and format the cells as dates, then these will also mostly map to dates in September, March, December and October.

#GENELISTS

ERROR_GENELISTS
##   [1] "PMC10040137 PMC_DL/PMC10040137/supplementaryfiles/13148_2023_1442_MOESM2_ESM.xlsx Ggallus 33 44441 44441 44445 44441 44262 44442 44445 44258 44259 44261 44441 44448 44256 44263 44449 44263 44260 44454 44444 44443 44263 44442 44445 44450 44446 44258 44258 44443 44264 44531 44449 44443 44443"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            
##   [2] "PMC10040137 PMC_DL/PMC10040137/supplementaryfiles/13148_2023_1442_MOESM2_ESM.xlsx Hsapiens 3 44257 44258 44440"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                
##   [3] "PMC10039465 PMC_DL/PMC10039465/supplementaryfiles/NIHMS1877580-supplement-7.xlsx Hsapiens 4 7-Sep 3-Sep 2-Sep 11-Sep"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          
##   [4] "PMC10037080 zip/SourceData_figures.xlsx Athaliana 8 45171 45170 45017 45017 45017 45171 45170 45017"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           
##   [5] "PMC10037080 zip/SourceData_figures.xlsx Athaliana 4 44652 44806 44652 44652"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   
##   [6] "PMC10037080 zip/SourceData_figures.xlsx Athaliana 8 45017 45171 45170 45017 45017 45171 45170 45017"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           
##   [7] "PMC10037080 zip/SourceData_figures.xlsx Athaliana 8 45017 45171 45170 45017 45017 45017 45171 45170"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           
##   [8] "PMC10037080 zip/SourceData_figures.xlsx Athaliana 8 45017 45171 45170 45171 45170 45017 45017 45017"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           
##   [9] "PMC10036921 PMC_DL/PMC10036921/supplementaryfiles/Table_1.xlsx Hsapiens 1 44994"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               
##  [10] "PMC10036921 PMC_DL/PMC10036921/supplementaryfiles/Table_1.xlsx Hsapiens 1 45176"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               
##  [11] "PMC10034058 PMC_DL/PMC10034058/supplementaryfiles/Table4.XLSX Hsapiens 15 38200 37104 37834 40422 37500 40787 39692 39326 37469 41153 37135 38231 40057 38596 37865"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           
##  [12] "PMC10033906 PMC_DL/PMC10033906/supplementaryfiles/41467_2023_37266_MOESM14_ESM.xlsx Hsapiens 17 44813 44806 44626 44808 44811 44805 44810 44622 44814 44627 44815 44625 44621 44628 44818 44629 44631"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         
##  [13] "PMC10033906 PMC_DL/PMC10033906/supplementaryfiles/41467_2023_37266_MOESM3_ESM.xlsx Hsapiens 268 44622 44622 44622 44811 44622 44622 44812 44811 44806 44813 44813 44621 44626 44812 44811 44626 44813 44626 44815 44626 44626 44815 44626 44806 44813 44622 44806 44622 44625 44626 44806 44819 44808 44808 44808 44806 44806 44806 44806 44622 44813 44813 44806 44806 44806 44811 44806 44806 44806 44806 44806 44626 44626 44626 44896 44625 44806 44806 44806 44806 44806 44811 44813 44811 44813 44806 44622 44625 44813 44814 44811 44806 44813 44814 44815 44626 44811 44813 44622 44622 44813 44815 44622 44806 44813 44806 44813 44812 44806 44806 44806 44808 44806 44626 44813 44626 44813 44806 44813 44813 44813 44815 44806 44622 44622 44806 44806 44625 44813 44626 44810 44805 44622 44813 44808 44626 44626 44811 44811 44810 44810 44621 44805 44813 44813 44813 44621 44626 44628 44814 44811 44811 44806 44806 44806 44813 44814 44626 44818 44818 44626 44627 44805 44814 44813 44627 44813 44622 44626 44810 44808 44808 44629 44627 44626 44626 44625 44625 44625 44813 44625 44625 44625 44806 44805 44813 44813 44806 44806 44813 44806 44811 44813 44622 44813 44806 44806 44813 44808 44813 44813 44813 44813 44813 44627 44813 44627 44806 44815 44814 44814 44622 44813 44813 44813 44813 44806 44810 44810 44811 44806 44813 44814 44806 44626 44626 44811 44810 44626 44621 44626 44813 44806 44806 44806 44626 44806 44814 44814 44805 44621 44811 44622 44808 44806 44622 44626 44626 44813 44815 44813 44896 44815 44811 44813 44813 44813 44813 44813 44622 44806 44813 44813 44622 44814 44806 44814 44811 44811 44811 44813 44806 44813 44815 44813 44626 44811 44813 44813 44813 44622 44622 44622 44814 44814 44806 44815 44815"                                                                                                                                                                                                                       
##  [14] "PMC10033906 PMC_DL/PMC10033906/supplementaryfiles/41467_2023_37266_MOESM15_ESM.xlsx Hsapiens 19 44813 44806 44811 44626 44814 44815 44622 44810 44808 44627 44896 44621 44805 44621 44622 44819 44628 44623 44818"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             
##  [15] "PMC10033906 PMC_DL/PMC10033906/supplementaryfiles/41467_2023_37266_MOESM4_ESM.xlsx Hsapiens 47 44819 44810 44626 44813 44815 44815 44631 44631 44622 44628 44813 44813 44813 44813 44813 44813 44813 44813 44813 44813 44813 44627 44815 44623 44818 44896 44896 44896 44896 44896 44813 44813 44813 44819 44819 44815 44813 44813 44813 44622 44622 44622 44814 44814 44806 44815 44815"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      
##  [16] "PMC10033906 PMC_DL/PMC10033906/supplementaryfiles/41467_2023_37266_MOESM13_ESM.xlsx Hsapiens 13 44806 44813 44622 44811 44626 44808 44814 44815 44625 44896 44622 44812 44810"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 
##  [17] "PMC10033906 PMC_DL/PMC10033906/supplementaryfiles/41467_2023_37266_MOESM6_ESM.xlsx Hsapiens 1 44819"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           
##  [18] "PMC10033906 PMC_DL/PMC10033906/supplementaryfiles/41467_2023_37266_MOESM5_ESM.xlsx Hsapiens 5 44626 44626 44811 44621 44819"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   
##  [19] "PMC10033451 PMC_DL/PMC10033451/supplementaryfiles/41591_2023_2221_MOESM3_ESM.xlsx Hsapiens 19 44815 44812 44626 44627 44629 44805 44811 44628 44622 44806 44625 44814 44813 44810 44622 44809 44621 44623 44621"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               
##  [20] "PMC10033451 PMC_DL/PMC10033451/supplementaryfiles/41591_2023_2221_MOESM3_ESM.xlsx Hsapiens 19 44809 44622 44623 44621 44805 44815 44626 44810 44622 44621 44806 44628 44812 44811 44814 44629 44813 44625 44627"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               
##  [21] "PMC10028295 PMC_DL/PMC10028295/supplementaryfiles/Table_4.xlsx Hsapiens 24 44986 44994 44990 44993 44992 44988 44991 44987 44991 44992 44994 44988 44987 44990 44993 44986 44991 44986 44987 44993 44988 44992 44990 44994"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    
##  [22] "PMC10028295 PMC_DL/PMC10028295/supplementaryfiles/Table_4.xlsx Hsapiens 8 44992 44991 44988 44994 44990 44993 44986 44987"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
##  [23] "PMC10028295 PMC_DL/PMC10028295/supplementaryfiles/Table_4.xlsx Hsapiens 32 44992 44994 44991 44988 44986 44990 44987 44993 44991 44988 44992 44990 44993 44987 44986 44994 44994 44992 44990 44988 44991 44993 44986 44987 44994 44991 44992 44987 44986 44990 44993 44988"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    
##  [24] "PMC10028295 PMC_DL/PMC10028295/supplementaryfiles/Table_4.xlsx Hsapiens 24 44991 44994 44990 44987 44988 44992 44993 44986 44990 44988 44992 44994 44991 44993 44987 44986 44991 44992 44990 44993 44988 44994 44987 44986"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    
##  [25] "PMC10028295 PMC_DL/PMC10028295/supplementaryfiles/Table_4.xlsx Hsapiens 24 44991 44987 44990 44994 44988 44992 44993 44986 44990 44992 44988 44994 44993 44986 44991 44987 44991 44990 44992 44993 44987 44986 44988 44994"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    
##  [26] "PMC10028295 PMC_DL/PMC10028295/supplementaryfiles/Table_4.xlsx Hsapiens 24 44988 44987 44991 44994 44992 44990 44993 44986 44994 44987 44992 44993 44988 44990 44991 44986 44987 44994 44988 44993 44990 44992 44991 44986"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    
##  [27] "PMC10028295 PMC_DL/PMC10028295/supplementaryfiles/Table_4.xlsx Hsapiens 32 44994 44991 44992 44986 44987 44990 44988 44993 44991 44988 44992 44994 44990 44993 44987 44986 44994 44991 44990 44988 44992 44986 44987 44993 44991 44986 44994 44992 44988 44987 44993 44990"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    
##  [28] "PMC10028295 PMC_DL/PMC10028295/supplementaryfiles/Table_4.xlsx Hsapiens 8 44991 44990 44992 44987 44986 44994 44993 44988"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
##  [29] "PMC10028295 PMC_DL/PMC10028295/supplementaryfiles/Table_2.xlsx Hsapiens 1 44991"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               
##  [30] "PMC10028223 PMC_DL/PMC10028223/supplementaryfiles/Supplementary_Data3.xlsx Hsapiens 2 44621 44622"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             
##  [31] "PMC10028223 PMC_DL/PMC10028223/supplementaryfiles/Supplementary_Data4.xlsx Hsapiens 3 44621 44622 44896"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       
##  [32] "PMC10027475 PMC_DL/PMC10027475/supplementaryfiles/mmc2.xlsx Hsapiens 16 36951 39508 36951 39508 36951 36951 36951 36951 36951 36951 39508 36951 36951 36951 36951 39508"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       
##  [33] "PMC10022859 zip/Supplementary_Table_1_Akbar_et_al.xlsx Hsapiens 11 37681 39326 37500 37316 40422 39692 41883 36951 38961 38412 39142"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          
##  [34] "PMC10022277 PMC_DL/PMC10022277/supplementaryfiles/12943_2023_1734_MOESM7_ESM.xlsx Hsapiens 2 39326 41883"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      
##  [35] "PMC10022277 PMC_DL/PMC10022277/supplementaryfiles/12943_2023_1734_MOESM7_ESM.xlsx Hsapiens 1 40422"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            
##  [36] "PMC10022277 PMC_DL/PMC10022277/supplementaryfiles/12943_2023_1734_MOESM7_ESM.xlsx Hsapiens 6 40422 39692 38961 37135 38231 37865"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              
##  [37] "PMC10022277 PMC_DL/PMC10022277/supplementaryfiles/12943_2023_1734_MOESM7_ESM.xlsx Hsapiens 13 40422 40787 40057 39692 42248 37865 38596 37500 39326 38231 37135 38961 41883"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   
##  [38] "PMC10022194 PMC_DL/PMC10022194/supplementaryfiles/12957_2022_2836_MOESM1_ESM.xlsx Hsapiens 3 43900 44078 44080"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                
##  [39] "PMC10022194 PMC_DL/PMC10022194/supplementaryfiles/12957_2022_2836_MOESM1_ESM.xlsx Hsapiens 1 44077"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            
##  [40] "PMC10017747 PMC_DL/PMC10017747/supplementaryfiles/Table_1.xlsx Mmusculus 2 43166 43160"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        
##  [41] "PMC10017747 PMC_DL/PMC10017747/supplementaryfiles/Table_1.xlsx Mmusculus 4 44621 44622 44626 44628"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            
##  [42] "PMC10017747 PMC_DL/PMC10017747/supplementaryfiles/Table_1.xlsx Hsapiens 2 44621 44622"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         
##  [43] "PMC10017747 PMC_DL/PMC10017747/supplementaryfiles/Table_1.xlsx Hsapiens 5 44808 44807 44809 44623 44630"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       
##  [44] "PMC10016690 PMC_DL/PMC10016690/supplementaryfiles/Table_3.xlsx Hsapiens 3 44621 44809 44623"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   
##  [45] "PMC10016690 PMC_DL/PMC10016690/supplementaryfiles/Table_2.xlsx Hsapiens 3 44621 44622 44812"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   
##  [46] "PMC10016690 PMC_DL/PMC10016690/supplementaryfiles/Table_1.xlsx Hsapiens 3 44622 44621 44896"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   
##  [47] "PMC10016662 PMC_DL/PMC10016662/supplementaryfiles/ppat.1011232.s013.xlsx Hsapiens 24 43898 43900 44089 44166 43892 44081 43897 43894 44076 44080 44085 43896 44079 44088 43893 43901 44078 44084 44083 43895 44082 43899 44086 44077"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          
##  [48] "PMC10010668 PMC_DL/PMC10010668/supplementaryfiles/cir-147-881-s006.xlsx Mmusculus 67 44627 44627 44627 44627 44627 44627 44627 44627 44627 44627 44627 44627 44815 44815 44815 44815 44815 44815 44815 44805 44805 44811 44811 44811 44811 44811 44811 44812 44812 44812 44812 44812 44812 44808 44808 44813 44813 44813 44813 44813 44813 44813 44813 44813 44813 44813 44631 44626 44626 44626 44626 44622 44622 44623 44623 44623 44623 44623 44623 44623 44623 44623 44623 44810 44810 44810 44810"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        
##  [49] "PMC10009272 PMC_DL/PMC10009272/supplementaryfiles/Table5.XLSX Hsapiens 28 41699 41884 41885 41699 41888 41887 41704 41892 41706 41893 41701 41698 41703 41895 41889 41705 41883 41973 41707 41700 41882 41896 41708 41890 41886 41698 41891 41702"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             
##  [50] "PMC10009272 PMC_DL/PMC10009272/supplementaryfiles/Table1.XLSX Hsapiens 28 44813 44806 44811 44812 44815 44814 44627 44819 44626 44625 44624 44628 44810 44622 44629 44809 44622 44623 44621 44818 44808 44805 44807 44621 44896 44630 44816 44631"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             
##  [51] "PMC10009272 PMC_DL/PMC10009272/supplementaryfiles/Table6.XLSX Hsapiens 28 43892 44077 44078 43892 44081 44080 43897 44085 43899 44086 43894 43891 43896 44088 44082 43898 44076 44166 43900 43893 44075 44089 43901 44083 44079 43891 44084 43895"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             
##  [52] "PMC10009272 PMC_DL/PMC10009272/supplementaryfiles/Table7.XLSX Hsapiens 28 43894 44085 44084 43899 43892 44082 44075 43897 43895 44081 44089 44079 44088 43891 43892 44083 44080 44166 43893 44077 43900 43896 43898 44076 44078 43891 44086 43901"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             
##  [53] "PMC10008571 PMC_DL/PMC10008571/supplementaryfiles/41467_2023_36922_MOESM4_ESM.xls Hsapiens 6 44621 44630 44626 44627 44628 44810"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              
##  [54] "PMC10005326 zip/Supp_Table_S3.xlsx Athaliana 2 44777 44777"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    
##  [55] "PMC10005268 zip/nutrients-2184192-sup1/Table_S9.xlsx Mmusculus 1 11-Sep"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       
##  [56] "PMC10002577 zip/Supp_Table_S3._Total_number_of_Single_Nucleotide_Variants_of_hepatic_lysosomal_enzyme_activities_and_GSLs_identified_by_GWAS_analysis_02.xlsx Mmusculus 2 38200 37135"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         
##  [57] "PMC10002577 zip/Supp_Table_S3._Total_number_of_Single_Nucleotide_Variants_of_hepatic_lysosomal_enzyme_activities_and_GSLs_identified_by_GWAS_analysis_02.xlsx Mmusculus 1 40422"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               
##  [58] "PMC10000440 zip/Table_S3.xlsx Ggallus 1 44622"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 
##  [59] "PMC10000440 zip/Table_S3.xlsx Ggallus 1 44622"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 
##  [60] "PMC10000440 zip/Table_S3.xlsx Ggallus 2 44622 44622"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           
##  [61] "PMC10000440 zip/Table_S3.xlsx Ggallus 1 44621"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 
##  [62] "PMC10000440 zip/Table_S2.xlsx Ggallus 4 44622 44622 44622 44622"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               
##  [63] "PMC10000440 zip/Table_S2.xlsx Ggallus 1 44621"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 
##  [64] "PMC10000302 PMC_DL/PMC10000302/supplementaryfiles/peerj-11-14913-s001.xlsx Mmusculus 22 44813 44621 44805 44630 44814 44631 44815 44622 44806 44623 44807 44624 44808 44625 44809 44626 44810 44627 44811 44628 44812 44629"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   
##  [65] "PMC10000302 PMC_DL/PMC10000302/supplementaryfiles/peerj-11-14913-s003.xlsx Mmusculus 22 44808 44805 44630 44622 44631 44809 44627 44815 44812 44628 44811 44625 44810 44624 44629 44807 44626 44814 44621 44806 44623 44813"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   
##  [66] "PMC9997660 PMC_DL/PMC9997660/supplementaryfiles/JCB_202208159_DataS1.xlsx Hsapiens 35 43534 43718 43529 43535 43528 43719 43722 43526 43527 43711 43800 43533 43712 43717 43716 43710 43714 43720 43713 43532 43717 43714 43718 43715 43715 43711 43713 43710 43723 43712 43716 43530 43720 43719 43531"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       
##  [67] "PMC9997660 PMC_DL/PMC9997660/supplementaryfiles/JCB_202208159_DataS2.xls Hsapiens 27 2021/12/01 2021/03/01 2021/03/02 2021/03/01 2021/03/10 2021/03/11 2021/03/02 2021/03/03 2021/03/04 2021/03/05 2021/03/06 2021/03/07 2021/03/08 2021/03/09 2021/09/01 2021/09/10 2021/09/11 2021/09/12 2021/09/14 2021/09/02 2021/09/03 2021/09/04 2021/09/05 2021/09/06 2021/09/07 2021/09/08 2021/09/09"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 
##  [68] "PMC9984532 PMC_DL/PMC9984532/supplementaryfiles/41467_2023_36866_MOESM7_ESM.xlsx Scerevisiae 2 37165 45413"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    
##  [69] "PMC9984532 PMC_DL/PMC9984532/supplementaryfiles/41467_2023_36866_MOESM7_ESM.xlsx Scerevisiae 2 37165 45413"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    
##  [70] "PMC9984532 PMC_DL/PMC9984532/supplementaryfiles/41467_2023_36866_MOESM7_ESM.xlsx Scerevisiae 2 37165 45413"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    
##  [71] "PMC9983314 PMC_DL/PMC9983314/supplementaryfiles/JCMM-27-714-s001.xlsx Hsapiens 30 44896 44630 44630 44622 44622 44623 44623 44625 44626 44627 44628 44628 44819 44819 44805 44814 44815 44816 44806 44806 44806 44806 44808 44809 44809 44809 44811 44811 44813 44813"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         
##  [72] "PMC9981464 PMC_DL/PMC9981464/supplementaryfiles/41564_2023_1326_MOESM3_ESM.xlsx Mmusculus 28 44446 44446 44447 44443 44260 44260 44263 44263 44263 44263 44441 44441 44262 44262 44454 44261 44445 44445 44450 44450 44448 44444 44444 44444 44444 44257 44257 44257"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          
##  [73] "PMC9981464 PMC_DL/PMC9981464/supplementaryfiles/41564_2023_1326_MOESM3_ESM.xlsx Mmusculus 1 44260"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             
##  [74] "PMC9981200 PMC_DL/PMC9981200/supplementaryfiles/crc-22-0037-s05.xlsx Hsapiens 25 44260 44448 44257 44266 44265 44256 44447 44256 44443 44262 44258 44444 44450 44259 44440 44263 44257 44441 44264 44445 44261 44451 44442 44446 44449"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        
##  [75] "PMC9981200 PMC_DL/PMC9981200/supplementaryfiles/crc-22-0037-s06.xlsx Hsapiens 23 43164 43348 43160 43344 43168 43166 43354 43162 43345 43169 43351 43165 43163 43161 43352 43170 43353 43350 43346 43347 43349 43355 43167"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    
##  [76] "PMC9980695 zip/Supplementary/SM_table_S1.xlsx Mmusculus 4 42064 42248 42256 42262"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             
##  [77] "PMC9980301 PMC_DL/PMC9980301/supplementaryfiles/MOL2-17-499-s008.xlsx Hsapiens 5 44813 44813 44813 44813 44809"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                
##  [78] "PMC9980301 PMC_DL/PMC9980301/supplementaryfiles/MOL2-17-499-s008.xlsx Hsapiens 2 44621 44808"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  
##  [79] "PMC9980301 PMC_DL/PMC9980301/supplementaryfiles/MOL2-17-499-s014.xlsx Hsapiens 5 44813 44813 44813 44813 44809"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                
##  [80] "PMC9980301 PMC_DL/PMC9980301/supplementaryfiles/MOL2-17-499-s005.xlsx Hsapiens 2 44621 44808"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  
##  [81] "PMC9977441 PMC_DL/PMC9977441/supplementaryfiles/jciinsight-8-162409-s115.xlsx Hsapiens 3 38200 37104 37834"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    
##  [82] "PMC9977441 PMC_DL/PMC9977441/supplementaryfiles/jciinsight-8-162409-s115.xlsx Hsapiens 4 38200 37469 37104 37834"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              
##  [83] "PMC9977441 PMC_DL/PMC9977441/supplementaryfiles/jciinsight-8-162409-s115.xlsx Hsapiens 4 38200 37469 37104 37834"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              
##  [84] "PMC9977441 PMC_DL/PMC9977441/supplementaryfiles/jciinsight-8-162409-s115.xlsx Hsapiens 3 38200 37469 37104"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    
##  [85] "PMC9977441 PMC_DL/PMC9977441/supplementaryfiles/jciinsight-8-162409-s115.xlsx Hsapiens 4 37469 37834 37104 38200"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              
##  [86] "PMC9977441 PMC_DL/PMC9977441/supplementaryfiles/jciinsight-8-162409-s115.xlsx Hsapiens 4 37469 37834 37104 38200"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              
##  [87] "PMC9977441 PMC_DL/PMC9977441/supplementaryfiles/jciinsight-8-162409-s115.xlsx Hsapiens 4 37469 37834 37104 38200"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              
##  [88] "PMC9977313 PMC_DL/PMC9977313/supplementaryfiles/jciinsight-8-150368-s052.xlsx Hsapiens 1 37681"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                
##  [89] "PMC9977313 PMC_DL/PMC9977313/supplementaryfiles/jciinsight-8-150368-s053.xlsx Hsapiens 3 36951 36951 41883"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    
##  [90] "PMC9975319 PMC_DL/PMC9975319/supplementaryfiles/mmc4.xlsx Hsapiens 14 43892 43892 43897 43899 43894 43891 43896 43898 44166 43900 43893 43901 43891 43895"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
##  [91] "PMC9975319 PMC_DL/PMC9975319/supplementaryfiles/mmc4.xlsx Hsapiens 10 43892 43892 43897 43899 43891 43896 43898 43893 43891 43895"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             
##  [92] "PMC9972295 PMC_DL/PMC9972295/supplementaryfiles/Table9.XLSX Hsapiens 28 43900 43901 44080 44085 44085 43897 44083 43899 43899 43892 43894 44076 43892 44084 44078 43895 44079 43893 44075 44083 44078 43896 43898 44082 44081 44077 44088 43891"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               
##  [93] "PMC10045015 zip/Table_S1._General_information_regarding_the_2507_human_genes_in_the_LCGene.xlsx Hsapiens 2 40057 38231"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        
##  [94] "PMC10043811 PMC_DL/PMC10043811/supplementaryfiles/mmc1.xlsx Hsapiens 12 44621 44623 44626 44624 44625 44896 44627 44631 44622 44630 44628 44629"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               
##  [95] "PMC10043811 PMC_DL/PMC10043811/supplementaryfiles/mmc1.xlsx Hsapiens 12 44626 44627 44621 44623 44628 44625 44629 44622 44631 44624 44630 44896"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               
##  [96] "PMC10043811 PMC_DL/PMC10043811/supplementaryfiles/mmc1.xlsx Hsapiens 12 44628 44622 44629 44627 44626 44624 44623 44630 44625 44621 44896 44631"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               
##  [97] "PMC10043811 PMC_DL/PMC10043811/supplementaryfiles/mmc1.xlsx Hsapiens 11 44621 44627 44626 44623 44630 44625 44629 44631 44624 44622 44628"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
##  [98] "PMC10043811 PMC_DL/PMC10043811/supplementaryfiles/mmc1.xlsx Hsapiens 12 44624 44626 44627 44621 44622 44625 44628 44896 44631 44629 44630 44623"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               
##  [99] "PMC10043811 PMC_DL/PMC10043811/supplementaryfiles/mmc1.xlsx Hsapiens 12 44623 44621 44626 44624 44631 44896 44622 44628 44625 44627 44629 44630"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               
## [100] "PMC10043811 PMC_DL/PMC10043811/supplementaryfiles/mmc1.xlsx Hsapiens 11 44621 44626 44627 44623 44622 44628 44625 44629 44630 44624 44631"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
## [101] "PMC10043811 PMC_DL/PMC10043811/supplementaryfiles/mmc1.xlsx Hsapiens 11 44626 44627 44625 44622 44623 44628 44630 44629 44624 44621 44896"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
## [102] "PMC10043811 PMC_DL/PMC10043811/supplementaryfiles/mmc1.xlsx Hsapiens 10 44623 44626 44625 44621 44627 44628 44629 44896 44624 44631"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           
## [103] "PMC10043811 PMC_DL/PMC10043811/supplementaryfiles/mmc1.xlsx Hsapiens 10 44628 44623 44627 44629 44626 44621 44625 44896 44624 44631"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           
## [104] "PMC10043811 PMC_DL/PMC10043811/supplementaryfiles/mmc1.xlsx Hsapiens 10 44623 44621 44896 44626 44624 44631 44625 44629 44627 44628"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           
## [105] "PMC10043811 PMC_DL/PMC10043811/supplementaryfiles/mmc1.xlsx Hsapiens 9 44623 44621 44626 44627 44625 44628 44624 44629 44896"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  
## [106] "PMC10043811 PMC_DL/PMC10043811/supplementaryfiles/mmc1.xlsx Hsapiens 10 44626 44624 44625 44628 44623 44896 44621 44627 44631 44629"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           
## [107] "PMC10043811 PMC_DL/PMC10043811/supplementaryfiles/mmc1.xlsx Hsapiens 10 44629 44626 44621 44627 44631 44624 44628 44625 44623 44896"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           
## [108] "PMC10043811 PMC_DL/PMC10043811/supplementaryfiles/mmc1.xlsx Hsapiens 9 44627 44623 44624 44625 44626 44896 44621 44629 44628"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  
## [109] "PMC10043811 PMC_DL/PMC10043811/supplementaryfiles/mmc1.xlsx Hsapiens 10 44626 44896 44627 44621 44628 44631 44625 44624 44629 44623"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           
## [110] "PMC10043811 PMC_DL/PMC10043811/supplementaryfiles/mmc1.xlsx Hsapiens 10 44621 44623 44627 44625 44626 44896 44624 44628 44631 44629"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           
## [111] "PMC10043811 PMC_DL/PMC10043811/supplementaryfiles/mmc1.xlsx Hsapiens 9 44621 44623 44629 44625 44626 44628 44896 44624 44627"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  
## [112] "PMC10043811 PMC_DL/PMC10043811/supplementaryfiles/mmc1.xlsx Hsapiens 10 44623 44627 44626 44629 44628 44621 44625 44896 44624 44631"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           
## [113] "PMC10043811 PMC_DL/PMC10043811/supplementaryfiles/mmc1.xlsx Hsapiens 10 44626 44628 44627 44621 44629 44625 44631 44624 44896 44623"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           
## [114] "PMC10043811 PMC_DL/PMC10043811/supplementaryfiles/mmc1.xlsx Hsapiens 9 44626 44629 44625 44623 44624 44896 44628 44627 44621"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  
## [115] "PMC10043811 PMC_DL/PMC10043811/supplementaryfiles/mmc1.xlsx Hsapiens 12 44623 44621 44628 44626 44627 44896 44631 44630 44624 44629 44625 44622"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               
## [116] "PMC10043811 PMC_DL/PMC10043811/supplementaryfiles/mmc1.xlsx Hsapiens 11 44623 44627 44622 44621 44896 44628 44629 44630 44624 44625 44626"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
## [117] "PMC10041653 PMC_DL/PMC10041653/supplementaryfiles/JCB_202205117_TableS1.xlsx Hsapiens 24 40787 38047 38412 37681 37865 37316 38777 41153 39692 37500 39873 38231 38596 40422 38961 40603 41883 40238 39508 39142 42248 37226 39326 40057"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      
## [118] "PMC10035230 PMC_DL/PMC10035230/supplementaryfiles/13148_2023_1463_MOESM7_ESM.xlsx Hsapiens 28 44815 44813 44813 44629 44813 44813 44813 44813 44813 44813 44813 44623 44813 44813 44813 44813 44813 44815 44809 44813 44812 44621 44630 44813 44813 44806 44810 44630"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         
## [119] "PMC10033758 PMC_DL/PMC10033758/supplementaryfiles/Table2.XLSX Hsapiens 5 44806 44623 44815 44814 44812"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        
## [120] "PMC10033758 PMC_DL/PMC10033758/supplementaryfiles/Table2.XLSX Hsapiens 2 44812 44622"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          
## [121] "PMC10033758 PMC_DL/PMC10033758/supplementaryfiles/Table2.XLSX Hsapiens 6 44806 44625 44815 44805 44810 44626"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  
## [122] "PMC10033758 PMC_DL/PMC10033758/supplementaryfiles/Table2.XLSX Hsapiens 3 44625 44806 44813"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    
## [123] "PMC10033758 PMC_DL/PMC10033758/supplementaryfiles/Table1.XLSX Hsapiens 2 44623 44819"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          
## [124] "PMC10033758 PMC_DL/PMC10033758/supplementaryfiles/Table1.XLSX Hsapiens 2 44815 44810"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          
## [125] "PMC10033758 PMC_DL/PMC10033758/supplementaryfiles/Table1.XLSX Hsapiens 3 44810 44815 44621"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    
## [126] "PMC10033758 PMC_DL/PMC10033758/supplementaryfiles/Table1.XLSX Hsapiens 1 44621"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                
## [127] "PMC10033758 PMC_DL/PMC10033758/supplementaryfiles/Table1.XLSX Hsapiens 2 44623 44625"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          
## [128] "PMC10033677 PMC_DL/PMC10033677/supplementaryfiles/41598_2023_31701_MOESM2_ESM.xlsx Hsapiens 28 42248 37316 36951 40422 39142 38047 37500 40787 36951 38777 40603 37681 39692 39326 41883 37226 39508 38412 39873 41153 37135 37135 38231 40238 40057 37316 38596 37865"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        
## [129] "PMC10033585 PMC_DL/PMC10033585/supplementaryfiles/Table_1.xls Hsapiens 8 2023/12/01 2023/03/01 2023/03/02 2023/03/03 2023/03/05 2023/03/06 2023/03/07 2023/03/08"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              
## [130] "PMC10033585 PMC_DL/PMC10033585/supplementaryfiles/Table_5.xls Hsapiens 2 2022/03/08 2022/03/06"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                
## [131] "PMC10033585 PMC_DL/PMC10033585/supplementaryfiles/Table_4.xls Hsapiens 3 2022/03/03 2022/03/06 2022/03/09"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
## [132] "PMC10033585 PMC_DL/PMC10033585/supplementaryfiles/Table_2.xls Hsapiens 7 2023/03/01 2023/03/02 2023/03/03 2023/03/05 2023/03/06 2023/03/07 2023/03/08"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         
## [133] "PMC10028083 PMC_DL/PMC10028083/supplementaryfiles/DataSheet_2.xlsx Hsapiens 7 44622 44628 44625 44814 44623 44815 44626"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       
## [134] "PMC10028083 PMC_DL/PMC10028083/supplementaryfiles/DataSheet_2.xlsx Hsapiens 2 44813 44810"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
## [135] "PMC10028083 PMC_DL/PMC10028083/supplementaryfiles/DataSheet_2.xlsx Hsapiens 1 44809"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           
## [136] "PMC10028083 PMC_DL/PMC10028083/supplementaryfiles/DataSheet_2.xlsx Hsapiens 8 44623 44816 44628 44814 44631 44896 44624 44625"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 
## [137] "PMC10028083 PMC_DL/PMC10028083/supplementaryfiles/DataSheet_2.xlsx Hsapiens 7 44808 44806 44813 44622 44621 44805 44810"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       
## [138] "PMC10028036 PMC_DL/PMC10028036/supplementaryfiles/CAM4-12-6009-s003.xlsx Hsapiens 1 44083"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
## [139] "PMC10027880 zip/Supplementary_Raw_data_8.xlsx Hsapiens 5 44258 44444 44256 44531 44442"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        
## [140] "PMC10025971 PMC_DL/PMC10025971/supplementaryfiles/mmc13.xlsx Hsapiens 1 44805"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 
## [141] "PMC10025971 PMC_DL/PMC10025971/supplementaryfiles/mmc13.xlsx Hsapiens 1 44630"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 
## [142] "PMC10025971 PMC_DL/PMC10025971/supplementaryfiles/mmc13.xlsx Hsapiens 3 44805 44628 44809"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
## [143] "PMC10025971 PMC_DL/PMC10025971/supplementaryfiles/mmc13.xlsx Hsapiens 4 44808 44623 44818 44807"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               
## [144] "PMC10025971 PMC_DL/PMC10025971/supplementaryfiles/mmc13.xlsx Hsapiens 1 44807"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 
## [145] "PMC10025971 PMC_DL/PMC10025971/supplementaryfiles/mmc13.xlsx Hsapiens 2 44624 44807"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           
## [146] "PMC10025971 PMC_DL/PMC10025971/supplementaryfiles/mmc13.xlsx Hsapiens 1 44807"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 
## [147] "PMC10025971 PMC_DL/PMC10025971/supplementaryfiles/mmc13.xlsx Hsapiens 8 44818 44816 44631 44810 44624 44621 44808 44628"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       
## [148] "PMC10025971 PMC_DL/PMC10025971/supplementaryfiles/mmc13.xlsx Hsapiens 2 44621 44631"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           
## [149] "PMC10025971 PMC_DL/PMC10025971/supplementaryfiles/mmc13.xlsx Hsapiens 6 44805 44626 44814 44815 44621 44628"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   
## [150] "PMC10025971 PMC_DL/PMC10025971/supplementaryfiles/mmc13.xlsx Hsapiens 2 44808 44628"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           
## [151] "PMC10025971 PMC_DL/PMC10025971/supplementaryfiles/mmc13.xlsx Hsapiens 1 44623"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 
## [152] "PMC10025971 PMC_DL/PMC10025971/supplementaryfiles/mmc13.xlsx Hsapiens 4 44630 44814 44807 44628"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               
## [153] "PMC10025971 PMC_DL/PMC10025971/supplementaryfiles/mmc13.xlsx Hsapiens 2 44624 44623"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           
## [154] "PMC10025971 PMC_DL/PMC10025971/supplementaryfiles/mmc13.xlsx Hsapiens 3 44818 44629 44624"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
## [155] "PMC10025971 PMC_DL/PMC10025971/supplementaryfiles/mmc16.xlsx Hsapiens 1 44631"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 
## [156] "PMC10025971 PMC_DL/PMC10025971/supplementaryfiles/mmc16.xlsx Hsapiens 1 44631"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 
## [157] "PMC10025971 PMC_DL/PMC10025971/supplementaryfiles/mmc16.xlsx Hsapiens 1 44807"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 
## [158] "PMC10025971 PMC_DL/PMC10025971/supplementaryfiles/mmc16.xlsx Hsapiens 1 44818"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 
## [159] "PMC10025971 PMC_DL/PMC10025971/supplementaryfiles/mmc16.xlsx Hsapiens 1 44809"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 
## [160] "PMC10025971 PMC_DL/PMC10025971/supplementaryfiles/mmc16.xlsx Hsapiens 3 44621 44818 44813"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
## [161] "PMC10025971 PMC_DL/PMC10025971/supplementaryfiles/mmc16.xlsx Hsapiens 1 44819"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 
## [162] "PMC10025971 PMC_DL/PMC10025971/supplementaryfiles/mmc16.xlsx Hsapiens 1 44813"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 
## [163] "PMC10025971 PMC_DL/PMC10025971/supplementaryfiles/mmc16.xlsx Hsapiens 2 44813 44812"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           
## [164] "PMC10025971 PMC_DL/PMC10025971/supplementaryfiles/mmc16.xlsx Hsapiens 4 44810 44812 44807 44808"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               
## [165] "PMC10025971 PMC_DL/PMC10025971/supplementaryfiles/mmc16.xlsx Hsapiens 11 44809 44816 44818 44807 44628 44813 44626 44819 44627 44631 44814"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    
## [166] "PMC10025971 PMC_DL/PMC10025971/supplementaryfiles/mmc16.xlsx Hsapiens 3 44629 44621 44812"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
## [167] "PMC10025971 PMC_DL/PMC10025971/supplementaryfiles/mmc16.xlsx Hsapiens 2 44629 44621"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           
## [168] "PMC10025971 PMC_DL/PMC10025971/supplementaryfiles/mmc16.xlsx Hsapiens 4 44810 44621 44631 44816"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               
## [169] "PMC10025971 PMC_DL/PMC10025971/supplementaryfiles/mmc16.xlsx Hsapiens 4 44630 44624 44817 44818"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               
## [170] "PMC10025971 PMC_DL/PMC10025971/supplementaryfiles/mmc16.xlsx Hsapiens 4 44819 44812 44811 44630"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               
## [171] "PMC10025971 PMC_DL/PMC10025971/supplementaryfiles/mmc16.xlsx Hsapiens 3 44630 44819 44810"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
## [172] "PMC10025971 PMC_DL/PMC10025971/supplementaryfiles/mmc16.xlsx Hsapiens 12 44624 44814 44623 44621 44806 44809 44815 44817 44631 44626 44813 44811"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              
## [173] "PMC10025971 PMC_DL/PMC10025971/supplementaryfiles/mmc16.xlsx Hsapiens 7 44816 44896 44630 44813 44809 44624 44621"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             
## [174] "PMC10025435 PMC_DL/PMC10025435/supplementaryfiles/supplementary_data_1_bbad032.xlsx Hsapiens 3 44809 44813 44810"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              
## [175] "PMC10025395 PMC_DL/PMC10025395/supplementaryfiles/Table_4.xlsx Hsapiens 5 44080 43891 43892 44083 43896"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       
## [176] "PMC10022665 zip/Suppl_data_Kim_etal_2022_Supplemental_Tables.xlsx Hsapiens 12 44621 44622 44819 44814 44815 44806 44807 44809 44810 44811 44812 44813"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         
## [177] "PMC10020157 PMC_DL/PMC10020157/supplementaryfiles/41467_2023_37057_MOESM4_ESM.xlsx Mmusculus 6 37500 40787 39326 39692 42248 37135"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            
## [178] "PMC10014956 PMC_DL/PMC10014956/supplementaryfiles/42003_2023_4655_MOESM3_ESM.xlsx Mmusculus 4 44627 44631 44811 44628"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         
## [179] "PMC10014730 PMC_DL/PMC10014730/supplementaryfiles/Table2.XLSX Hsapiens 3 45178 45177 45173"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    
## [180] "PMC10012531 PMC_DL/PMC10012531/supplementaryfiles/12920_2023_1479_MOESM1_ESM.xlsx Hsapiens 19 44814 44815 44819 44812 44813 44810 44811 44808 44806 44622 44621 44628 44627 44626 44625 44623 44622 44621 44896"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               
## [181] "PMC10012531 PMC_DL/PMC10012531/supplementaryfiles/12920_2023_1479_MOESM1_ESM.xlsx Hsapiens 26 44814 44815 44816 44819 44812 44813 44810 44811 44805 44808 44806 44807 44631 44630 44622 44621 44629 44628 44627 44626 44625 44624 44623 44622 44621 44896"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
## [182] "PMC10012531 PMC_DL/PMC10012531/supplementaryfiles/12920_2023_1479_MOESM1_ESM.xlsx Hsapiens 10 44629 44628 44627 44626 44625 44624 44623 44622 44621 44896"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
## [183] "PMC10011742 PMC_DL/PMC10011742/supplementaryfiles/mmc2.xlsx Ggallus 2 44806 44810"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             
## [184] "PMC10011742 PMC_DL/PMC10011742/supplementaryfiles/mmc3.xlsx Hsapiens 19 44986 44986 44987 44988 44990 44991 44992 44993 44994 45184 45170 45179 45180 45171 45173 45175 45176 45177 45178"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
## [185] "PMC10011429 PMC_DL/PMC10011429/supplementaryfiles/mmc1.xlsx Hsapiens 1 14977"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  
## [186] "PMC10011141 PMC_DL/PMC10011141/supplementaryfiles/41588_2023_1324_MOESM7_ESM.xlsx Mmusculus 10 44622 44623 44627 44811 44806 44806 44816 44623 44809 44627"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    
## [187] "PMC10011141 PMC_DL/PMC10011141/supplementaryfiles/41588_2023_1324_MOESM7_ESM.xlsx Mmusculus 41 44625 44621 44627 44815 44808 44630 44814 44807 44622 44809 44808 44813 44628 44629 44621 44628 44627 44812 44626 44808 44621 44807 44814 44626 44622 44813 44631 44809 44807 44623 44622 44816 44809 44624 44628 44808 44807 44628 44809 44626 44624"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          
## [188] "PMC10011141 PMC_DL/PMC10011141/supplementaryfiles/41588_2023_1324_MOESM7_ESM.xlsx Mmusculus 60 44628 44814 44627 44811 44809 44808 44629 44622 44626 44625 44811 44628 44814 44627 44811 44622 44625 44808 44808 44627 44628 44626 44625 44813 44808 44622 44621 44814 44621 44809 44814 44809 44621 44811 44625 44808 44816 44814 44622 44627 44815 44622 44622 44624 44811 44808 44628 44622 44808 44627 44816 44623 44811 44627 44630 44808 44811 44623 44809 44807"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        
## [189] "PMC10011141 PMC_DL/PMC10011141/supplementaryfiles/41588_2023_1324_MOESM7_ESM.xlsx Mmusculus 84 44809 44621 44621 44816 44809 44816 44808 44807 44816 44811 44628 44809 44622 44818 44628 44809 44813 44811 44809 44814 44809 44812 44627 44631 44623 44631 44626 44815 44621 44628 44625 44818 44631 44814 44808 44621 44622 44626 44818 44811 44631 44808 44627 44631 44812 44624 44809 44628 44808 44627 44624 44806 44630 44807 44628 44625 44630 44808 44809 44631 44809 44623 44622 44622 44628 44625 44621 44811 44812 44627 44621 44627 44621 44627 44626 44815 44625 44622 44811 44628 44630 44812 44811 44621"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        
## [190] "PMC10011141 PMC_DL/PMC10011141/supplementaryfiles/41588_2023_1324_MOESM7_ESM.xlsx Mmusculus 89 44808 44621 44623 44630 44630 44630 44621 44813 44811 44630 44621 44621 44621 44812 44624 44627 44623 44621 44628 44813 44630 44621 44813 44814 44624 44813 44630 44624 44624 44623 44621 44624 44631 44808 44621 44814 44624 44623 44810 44813 44621 44622 44814 44624 44814 44631 44814 44811 44627 44631 44813 44631 44631 44809 44813 44807 44628 44621 44628 44628 44813 44631 44626 44621 44624 44811 44811 44631 44631 44814 44806 44814 44811 44630 44811 44621 44631 44621 44626 44624 44628 44811 44809 44621 44631 44811 44622 44807 44813"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          
## [191] "PMC10011141 PMC_DL/PMC10011141/supplementaryfiles/41588_2023_1324_MOESM6_ESM.xlsx Mmusculus 1 44810"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           
## [192] "PMC10011137 PMC_DL/PMC10011137/supplementaryfiles/41588_2023_1314_MOESM4_ESM.xlsx Hsapiens 11 37316 36951 37500 37500 37681 40238 40057 37316 38596 38596 37865"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               
## [193] "PMC10011137 PMC_DL/PMC10011137/supplementaryfiles/41588_2023_1314_MOESM4_ESM.xlsx Hsapiens 2 37681 40057"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      
## [194] "PMC10011137 PMC_DL/PMC10011137/supplementaryfiles/41588_2023_1314_MOESM4_ESM.xlsx Hsapiens 2 37681 40057"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      
## [195] "PMC10011132 PMC_DL/PMC10011132/supplementaryfiles/41588_2023_1327_MOESM4_ESM.xlsx Hsapiens 59 39326 37500 39326 37500 40057 37500 39326 40057 36951 39326 37500 37500 40787 40057 37500 39508 39326 39326 37500 39326 39326 39326 39326 39326 40787 40057 37500 39508 39326 37500 39326 37500 37500 39508 39326 37500 37500 37500 40057 40057 37500 39326 40057 37500 39326 39326 37681 39326 39326 37500 40057 38777 37500 39326 39326 37316 39508 38412 36951"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               
## [196] "PMC10011132 PMC_DL/PMC10011132/supplementaryfiles/41588_2023_1327_MOESM4_ESM.xlsx Hsapiens 6 37500 36951 39508 37681 37316 38412"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              
## [197] "PMC10010006 PMC_DL/PMC10010006/supplementaryfiles/13287_2023_3259_MOESM6_ESM.xlsx Hsapiens 301 43895 43895 43895 43899 43895 43899 43895 43895 43895 43899 43895 43895 43895 43895 43895 43895 43895 43895 43895 43895 43899 43895 43895 43896 43895 43901 43895 43896 43895 43895 43895 43895 43895 43901 43899 43895 43895 43895 43895 43895 43895 43895 43895 43895 43895 43895 43895 43895 43895 43895 43895 43895 43895 43895 43895 43899 43893 43901 43899 43895 43895 43895 43895 43895 43895 43895 43895 43895 43893 43895 43895 43899 43895 43895 43899 43899 43895 43895 43895 43895 43901 43895 43895 43899 43895 43895 43895 43895 43899 43901 43899 43895 43895 43895 43895 43895 43895 43895 43895 43895 43895 43895 43895 43893 43895 43895 43895 43895 43895 43895 43901 43899 43895 43899 43895 43895 43899 43895 43895 43895 43895 43895 43895 43893 43895 43895 43895 43901 43899 43895 43901 43895 43895 43895 43895 43899 43895 43895 43895 43899 43895 43899 43895 43893 43895 43899 43899 43895 43895 43895 43895 43895 43901 43899 43895 43895 43895 43895 43896 43895 43895 43893 43899 43901 43895 43899 43901 43895 43895 43893 43895 43895 43899 43895 43895 43895 43895 43899 43895 43895 43901 43895 43901 43895 43899 43895 43895 43899 43895 43895 43895 43895 43895 43893 43895 43899 43895 43895 43895 43899 43895 43895 43895 43899 43895 43895 43895 43901 43895 43901 43899 43895 43895 43895 43895 43895 43895 43895 43895 43895 43895 43895 43895 43899 43895 43901 43895 43899 43895 43895 43895 43899 43899 43895 43895 43895 43899 43899 43895 43895 43895 43895 43895 43895 43895 43895 43895 43895 43895 43895 43899 43895 43895 43895 43901 43899 43895 43895 43901 43895 43895 43895 43895 43895 43895 43895 43895 43895 43895 43895 43895 43895 43895 43895 43899 43895 43896 43895 43895 43895 43895 43895 43895 43895 43895 43901 43895 43895 43899 43895 43893 43895 43895 43895 43895 43895 43899 43895 43893 43895 43895"                  
## [198] "PMC10010006 PMC_DL/PMC10010006/supplementaryfiles/13287_2023_3259_MOESM6_ESM.xlsx Hsapiens 304 43895 43895 43895 43895 43895 43895 43899 43895 43899 43895 43895 43895 43895 43895 43901 43895 43895 43895 43895 43895 43895 43895 43896 43895 43895 43895 43895 43895 43895 43895 43895 43899 43901 43895 43895 43896 43895 43893 43895 43895 43899 43899 43899 43895 43895 43895 43895 43895 43895 43899 43895 43895 43895 43895 43895 43899 43895 43895 43895 43895 43895 43895 43895 43901 43895 43901 43895 43895 43895 43895 43901 43895 43895 43895 43895 43899 43895 43895 43895 43895 43895 43899 43893 43895 43901 43901 43895 43895 43899 43895 43895 43895 43895 43895 43895 43895 43895 43901 43895 43895 43895 43895 43895 43895 43899 43895 43895 43895 43895 43901 43895 43895 43895 43899 43895 43895 43901 43895 43895 43895 43895 43893 43895 43895 43895 43895 43895 43895 43895 43895 43895 43895 43895 43901 43895 43895 43895 43899 43895 43893 43901 43895 43899 43895 43895 43895 43895 43899 43895 43895 43895 43895 43895 43895 43895 43895 43895 43895 43895 43895 43895 43895 43895 43895 43895 43895 43899 43895 43895 43895 43895 43895 43895 43893 43899 43895 43899 43895 43895 43895 43895 43895 43895 43895 43899 43895 43893 43899 43899 43895 43895 43895 43895 43895 43895 43899 43901 43901 43895 43895 43901 43895 43895 43895 43895 43893 43899 43895 43901 43895 43895 43895 43895 43895 43893 43895 43899 43901 43893 43895 43895 43901 43895 43895 43895 43895 43895 43899 43895 43896 43895 43895 43895 43895 43895 43895 43899 43895 43893 43895 43901 43895 43895 43895 43895 43895 43895 43895 43895 43899 43899 43901 43901 43895 43895 43895 43895 43895 43895 43895 43895 43895 43895 43895 43895 43895 43895 43895 43893 43895 43899 43895 43895 43899 43895 43899 43899 43899 43895 43895 43895 43895 43899 43895 43895 43895 43895 43895 43895 43895 43895 43895 43895 43895 43895 43895 43901 43895 43895 43895 43901 43895 43895 43895"
## [199] "PMC10010006 PMC_DL/PMC10010006/supplementaryfiles/13287_2023_3259_MOESM2_ESM.xlsx Hsapiens 1 43895"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            
## [200] "PMC10008496 PMC_DL/PMC10008496/supplementaryfiles/aging-15-204552-s003.xlsx Hsapiens 2 44810 44805"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            
## [201] "PMC10003012 zip/Table_S5_Lists_of_mRNAs_correlated_across_cancer_types.xlsx Hsapiens 3 38231 36951 38961"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      
## [202] "PMC10002421 PMC_DL/PMC10002421/supplementaryfiles/Table_1.xls Hsapiens 2 2019/03/03 2019/03/02"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                
## [203] "PMC10002421 PMC_DL/PMC10002421/supplementaryfiles/Table_1.xls Hsapiens 1 2019/03/09"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           
## [204] "PMC10002421 PMC_DL/PMC10002421/supplementaryfiles/Table_6.xls Hsapiens 1 2019/03/03"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           
## [205] "PMC9998611 PMC_DL/PMC9998611/supplementaryfiles/41598_2023_30926_MOESM6_ESM.xlsx Hsapiens 27 42795 42980 42981 42795 42984 42983 42800 42988 42802 42989 42797 42794 42799 42991 42985 42801 42979 43069 42803 42796 42978 42804 42986 42982 42794 42987 42798"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                
## [206] "PMC9998611 PMC_DL/PMC9998611/supplementaryfiles/41598_2023_30926_MOESM10_ESM.xlsx Hsapiens 1 44265"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            
## [207] "PMC9998435 PMC_DL/PMC9998435/supplementaryfiles/41598_2023_31141_MOESM5_ESM.xlsx Hsapiens 7 36951 40422 37500 40057 39692 39142 38047"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         
## [208] "PMC9998435 PMC_DL/PMC9998435/supplementaryfiles/41598_2023_31141_MOESM5_ESM.xlsx Hsapiens 12 36951 38777 37865 37316 38231 39508 38961 39326 42248 40787 38412 39873"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          
## [209] "PMC9998435 PMC_DL/PMC9998435/supplementaryfiles/41598_2023_31141_MOESM5_ESM.xlsx Hsapiens 11 36951 37865 37316 40787 38777 39326 38961 42248 38231 39508 38412"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                
## [210] "PMC9998435 PMC_DL/PMC9998435/supplementaryfiles/41598_2023_31141_MOESM5_ESM.xlsx Hsapiens 8 36951 39692 40422 39142 40057 37500 38047 39873"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   
## [211] "PMC9998435 PMC_DL/PMC9998435/supplementaryfiles/41598_2023_31141_MOESM5_ESM.xlsx Hsapiens 4 39142 39692 38961 38047"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           
## [212] "PMC9998435 PMC_DL/PMC9998435/supplementaryfiles/41598_2023_31141_MOESM5_ESM.xlsx Hsapiens 12 36951 40787 37316 40422 38412 39873 40057 38777 37500 37865 39326 42248"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          
## [213] "PMC9998435 PMC_DL/PMC9998435/supplementaryfiles/41598_2023_31141_MOESM8_ESM.xlsx Hsapiens 14 37865 40787 40422 38047 39326 40057 39692 38412 39873 37500 37316 37681 39142 38961"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              
## [214] "PMC9998435 PMC_DL/PMC9998435/supplementaryfiles/41598_2023_31141_MOESM8_ESM.xlsx Hsapiens 10 42248 36951 39508 37135 36951 38231 37316 40238 40603 38777"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      
## [215] "PMC9998435 PMC_DL/PMC9998435/supplementaryfiles/41598_2023_31141_MOESM8_ESM.xlsx Hsapiens 9 38777 42248 36951 37681 39508 39142 38231 38961 40057"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             
## [216] "PMC9998435 PMC_DL/PMC9998435/supplementaryfiles/41598_2023_31141_MOESM8_ESM.xlsx Hsapiens 14 40422 40787 37135 37865 38047 39326 38412 39692 37500 40238 40603 36951 39873 37316"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              
## [217] "PMC9998435 PMC_DL/PMC9998435/supplementaryfiles/41598_2023_31141_MOESM8_ESM.xlsx Hsapiens 7 40422 39326 40787 37865 37316 39142 42248"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         
## [218] "PMC9998435 PMC_DL/PMC9998435/supplementaryfiles/41598_2023_31141_MOESM8_ESM.xlsx Hsapiens 5 40057 39873 38777 38412 37500"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
## [219] "PMC9998435 PMC_DL/PMC9998435/supplementaryfiles/41598_2023_31141_MOESM8_ESM.xlsx Hsapiens 1 40787"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             
## [220] "PMC9998083 PMC_DL/PMC9998083/supplementaryfiles/elife-81097-supp1.xlsx Hsapiens 4 36892 36892 36892 36892"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
## [221] "PMC9997923 PMC_DL/PMC9997923/supplementaryfiles/pone.0281061.s002.xlsx Hsapiens 1 44815"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       
## [222] "PMC9996951 PMC_DL/PMC9996951/supplementaryfiles/40659_2023_417_MOESM3_ESM.xlsx Hsapiens 4 40057 38596 40787 40787"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             
## [223] "PMC9996951 PMC_DL/PMC9996951/supplementaryfiles/40659_2023_417_MOESM3_ESM.xlsx Hsapiens 2 39692 41518"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         
## [224] "PMC9995926 PMC_DL/PMC9995926/supplementaryfiles/Data_Sheet_2.xlsx Hsapiens 5 7-Mar 8-Mar 1-Mar 6-Mar 3-Mar"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    
## [225] "PMC9995926 PMC_DL/PMC9995926/supplementaryfiles/Data_Sheet_2.xlsx Hsapiens 1 4-Mar"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            
## [226] "PMC9995291 PMC_DL/PMC9995291/supplementaryfiles/mmc4.xlsx Hsapiens 2 44621 44623"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              
## [227] "PMC9995291 PMC_DL/PMC9995291/supplementaryfiles/mmc7.xlsx Hsapiens 1 44623"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    
## [228] "PMC9995291 PMC_DL/PMC9995291/supplementaryfiles/mmc2.xlsx Hsapiens 5 44621 44623 44805 44815 44811"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            
## [229] "PMC9995291 PMC_DL/PMC9995291/supplementaryfiles/mmc2.xlsx Hsapiens 3 44621 44814 44811"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        
## [230] "PMC9995291 PMC_DL/PMC9995291/supplementaryfiles/mmc3.xlsx Ggallus 2 44621 44623"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               
## [231] "PMC9995291 PMC_DL/PMC9995291/supplementaryfiles/mmc3.xlsx Hsapiens 2 44628 44623"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              
## [232] "PMC9982299 PMC_DL/PMC9982299/supplementaryfiles/mmc2.xlsx Hsapiens 6 FOSL2-JUND FOSL2-JUNB FOSL2-JUN FOSL1-JUND FOSL1-JUN FOSL1-JUNB"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          
## [233] "PMC9982299 PMC_DL/PMC9982299/supplementaryfiles/mmc3.xlsx Hsapiens 15 43527 43525 43527 43527 43529 43527 43722 43723 43531 43532 43525 43533 43532 43532 43529"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               
## [234] "PMC9981717 PMC_DL/PMC9981717/supplementaryfiles/412_2023_787_MOESM1_ESM.xlsx Dmelanogaster 6 44443 44441 44440 1-Dec 44444 44441"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              
## [235] "PMC9981717 PMC_DL/PMC9981717/supplementaryfiles/412_2023_787_MOESM1_ESM.xlsx Dmelanogaster 5 38231 37500 37135 38596 37500"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    
## [236] "PMC9981717 PMC_DL/PMC9981717/supplementaryfiles/412_2023_787_MOESM4_ESM.xlsx Dmelanogaster 2 1-Sep 2-Sep"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      
## [237] "PMC9981717 PMC_DL/PMC9981717/supplementaryfiles/412_2023_787_MOESM4_ESM.xlsx Dmelanogaster 2 37135 37500"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      
## [238] "PMC9981717 PMC_DL/PMC9981717/supplementaryfiles/412_2023_787_MOESM4_ESM.xlsx Dmelanogaster 1 4-Sep"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            
## [239] "PMC9981717 PMC_DL/PMC9981717/supplementaryfiles/412_2023_787_MOESM4_ESM.xlsx Dmelanogaster 1 38231"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            
## [240] "PMC9981717 PMC_DL/PMC9981717/supplementaryfiles/412_2023_787_MOESM4_ESM.xlsx Dmelanogaster 1 1-Sep"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            
## [241] "PMC9981717 PMC_DL/PMC9981717/supplementaryfiles/412_2023_787_MOESM4_ESM.xlsx Dmelanogaster 1 37135"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            
## [242] "PMC9981717 PMC_DL/PMC9981717/supplementaryfiles/412_2023_787_MOESM4_ESM.xlsx Dmelanogaster 2 2-Sep 1-Sep"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      
## [243] "PMC9981717 PMC_DL/PMC9981717/supplementaryfiles/412_2023_787_MOESM4_ESM.xlsx Dmelanogaster 2 37500 37135"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      
## [244] "PMC9981717 PMC_DL/PMC9981717/supplementaryfiles/412_2023_787_MOESM3_ESM.xlsx Dmelanogaster 1 2-Sep"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            
## [245] "PMC9981717 PMC_DL/PMC9981717/supplementaryfiles/412_2023_787_MOESM3_ESM.xlsx Dmelanogaster 1 37500"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            
## [246] "PMC9981717 PMC_DL/PMC9981717/supplementaryfiles/412_2023_787_MOESM3_ESM.xlsx Dmelanogaster 1 2-Sep"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            
## [247] "PMC9981215 PMC_DL/PMC9981215/supplementaryfiles/crc-21-0194-s06.xlsx Hsapiens 3 44813 44809 44810"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             
## [248] "PMC9978639 PMC_DL/PMC9978639/supplementaryfiles/mmc11.xlsx Hsapiens 3 44811 44806 44810"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       
## [249] "PMC9978323 PMC_DL/PMC9978323/supplementaryfiles/mmc2.xlsx Hsapiens 14 36951 37316 36951 37316 38047 38412 39873 42248 41153 41883 37500 38596 39326 39692"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
## [250] "PMC9977725 PMC_DL/PMC9977725/supplementaryfiles/41598_2023_29843_MOESM2_ESM.xlsx Hsapiens 6 44989 44992 44991 45170 45180 44991"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               
## [251] "PMC9977725 PMC_DL/PMC9977725/supplementaryfiles/41598_2023_29843_MOESM2_ESM.xlsx Hsapiens 1 45170"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             
## [252] "PMC9977725 PMC_DL/PMC9977725/supplementaryfiles/41598_2023_29843_MOESM2_ESM.xlsx Hsapiens 3 45170 44991 44991"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 
## [253] "PMC9977003 PMC_DL/PMC9977003/supplementaryfiles/pone.0280495.s002.xlsx Hsapiens 1 43891"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       
## [254] "PMC9975292 PMC_DL/PMC9975292/supplementaryfiles/mmc4.xlsx Hsapiens 3 44806 44811 44813"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        
## [255] "PMC9975158 zip/Table-/Table_S5._The_detailed_information_of_significantly_changed_m6A_peaks_among_the_TBI_group_and_TBI+Hypo_group.xlsx Mmusculus 1 44262"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
## [256] "PMC9975158 zip/Table-/Table_S4._The_detailed_information_of_significantly_changed_m6A_peaks_after_TBI.xlsx Mmusculus 1 44988"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  
## [257] "PMC9975158 zip/Table-/Table_S7._The_detailed_information_of_conjoint_analysis_between_m6A_methylationm_and_RNA_expression_after_TBI.xlsx Rnorvegicus 1 44258"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  
## [258] "PMC9975158 zip/Table-/Table_S6._The_detailed_information_of_significantly_changed_mRNA_after_TBI.xlsx Mmusculus 1 44258"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       
## [259] "PMC9972178 PMC_DL/PMC9972178/supplementaryfiles/CAM4-12-4993-s002.xlsx Hsapiens 6 44257 44256 44449 44262 44259 44441"                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         
## [260] "PMC9972178 PMC_DL/PMC9972178/supplementaryfiles/CAM4-12-4993-s002.xlsx Hsapiens 6 44257 44256 44449 44262 44259 44441"

In depth look at the errors

Let’s investigate the errors in more detail.

# By species
SPECIES <- sapply(strsplit(ERROR_GENELISTS," "),"[[",3)
table(SPECIES)
## SPECIES
##     Athaliana Dmelanogaster       Ggallus      Hsapiens     Mmusculus 
##             6            13             9           206            22 
##   Rnorvegicus   Scerevisiae 
##             1             3
par(mar=c(5,12,4,2))
barplot(table(SPECIES),horiz=TRUE,las=1)

par(mar=c(5,5,4,2))

# Number of affected Excel files per paper
DIST <- table(sapply(strsplit(ERROR_GENELISTS," "),"[[",1))
DIST
## 
## PMC10000302 PMC10000440 PMC10002421 PMC10002577 PMC10003012 PMC10005268 
##           2           6           3           2           1           1 
## PMC10005326 PMC10008496 PMC10008571 PMC10009272 PMC10010006 PMC10010668 
##           1           1           1           4           3           1 
## PMC10011132 PMC10011137 PMC10011141 PMC10011429 PMC10011742 PMC10012531 
##           2           3           6           1           2           3 
## PMC10014730 PMC10014956 PMC10016662 PMC10016690 PMC10017747 PMC10020157 
##           1           1           1           3           4           1 
## PMC10022194 PMC10022277 PMC10022665 PMC10022859 PMC10025395 PMC10025435 
##           2           4           1           1           1           1 
## PMC10025971 PMC10027475 PMC10027880 PMC10028036 PMC10028083 PMC10028223 
##          34           1           1           1           5           2 
## PMC10028295 PMC10033451 PMC10033585 PMC10033677 PMC10033758 PMC10033906 
##           9           2           4           1           9           7 
## PMC10034058 PMC10035230 PMC10036921 PMC10037080 PMC10039465 PMC10040137 
##           1           1           2           5           1           2 
## PMC10041653 PMC10043811 PMC10045015  PMC9972178  PMC9972295  PMC9975158 
##           1          23           1           2           1           4 
##  PMC9975292  PMC9975319  PMC9977003  PMC9977313  PMC9977441  PMC9977725 
##           1           2           1           2           7           3 
##  PMC9978323  PMC9978639  PMC9980301  PMC9980695  PMC9981200  PMC9981215 
##           1           1           4           1           2           1 
##  PMC9981464  PMC9981717  PMC9982299  PMC9983314  PMC9984532  PMC9995291 
##           2          13           2           1           3           6 
##  PMC9995926  PMC9996951  PMC9997660  PMC9997923  PMC9998083  PMC9998435 
##           2           2           2           1           1          13 
##  PMC9998611 
##           2
summary(as.numeric(DIST))
##    Min. 1st Qu.  Median    Mean 3rd Qu.    Max. 
##   1.000   1.000   2.000   3.291   3.000  34.000
hist(DIST,main="Number of affected Excel files per paper")

# PMC Articles with the most errors
DIST_DF <- as.data.frame(DIST)
DIST_DF <- DIST_DF[order(-DIST_DF$Freq),,drop=FALSE]
head(DIST_DF,20)
##           Var1 Freq
## 31 PMC10025971   34
## 50 PMC10043811   23
## 68  PMC9981717   13
## 78  PMC9998435   13
## 37 PMC10028295    9
## 41 PMC10033758    9
## 42 PMC10033906    7
## 59  PMC9977441    7
## 2  PMC10000440    6
## 15 PMC10011141    6
## 72  PMC9995291    6
## 35 PMC10028083    5
## 46 PMC10037080    5
## 10 PMC10009272    4
## 23 PMC10017747    4
## 26 PMC10022277    4
## 39 PMC10033585    4
## 54  PMC9975158    4
## 63  PMC9980301    4
## 3  PMC10002421    3
MOST_ERR_FILES = as.character(DIST_DF[1,1])
MOST_ERR_FILES
## [1] "PMC10025971"
# Number of errors per paper
NERR <- as.numeric(sapply(strsplit(ERROR_GENELISTS," "),"[[",4))
names(NERR) <- sapply(strsplit(ERROR_GENELISTS," "),"[[",1)
NERR <-tapply(NERR, names(NERR), sum)
NERR
## PMC10000302 PMC10000440 PMC10002421 PMC10002577 PMC10003012 PMC10005268 
##          44          10           4           3           3           1 
## PMC10005326 PMC10008496 PMC10008571 PMC10009272 PMC10010006 PMC10010668 
##           2           2           6         112         606          67 
## PMC10011132 PMC10011137 PMC10011141 PMC10011429 PMC10011742 PMC10012531 
##          65          15         285           1          21          55 
## PMC10014730 PMC10014956 PMC10016662 PMC10016690 PMC10017747 PMC10020157 
##           3           4          24           9          13           6 
## PMC10022194 PMC10022277 PMC10022665 PMC10022859 PMC10025395 PMC10025435 
##           4          22          12          11           5           3 
## PMC10025971 PMC10027475 PMC10027880 PMC10028036 PMC10028083 PMC10028223 
##         107          16           5           1          25           5 
## PMC10028295 PMC10033451 PMC10033585 PMC10033677 PMC10033758 PMC10033906 
##         177          38          20          28          26         370 
## PMC10034058 PMC10035230 PMC10036921 PMC10037080 PMC10039465 PMC10040137 
##          15          28           2          36           4          36 
## PMC10041653 PMC10043811 PMC10045015  PMC9972178  PMC9972295  PMC9975158 
##          24         242           2          12          28           4 
##  PMC9975292  PMC9975319  PMC9977003  PMC9977313  PMC9977441  PMC9977725 
##           3          24           1           4          26          10 
##  PMC9978323  PMC9978639  PMC9980301  PMC9980695  PMC9981200  PMC9981215 
##          14           3          14           4          48           3 
##  PMC9981464  PMC9981717  PMC9982299  PMC9983314  PMC9984532  PMC9995291 
##          29          26          21          30           6          15 
##  PMC9995926  PMC9996951  PMC9997660  PMC9997923  PMC9998083  PMC9998435 
##           6           6          62           1           4         114 
##  PMC9998611 
##          28
hist(NERR,main="number of errors per PMC article")

NERR_DF <- as.data.frame(NERR)
NERR_DF <- NERR_DF[order(-NERR_DF$NERR),,drop=FALSE]
head(NERR_DF,20)
##             NERR
## PMC10010006  606
## PMC10033906  370
## PMC10011141  285
## PMC10043811  242
## PMC10028295  177
## PMC9998435   114
## PMC10009272  112
## PMC10025971  107
## PMC10010668   67
## PMC10011132   65
## PMC9997660    62
## PMC10012531   55
## PMC9981200    48
## PMC10000302   44
## PMC10033451   38
## PMC10037080   36
## PMC10040137   36
## PMC9983314    30
## PMC9981464    29
## PMC10033677   28
MOST_ERR = rownames(NERR_DF)[1]
MOST_ERR
## [1] "PMC10010006"

Journals affected

GENELIST_ERROR_ARTICLES <- gsub("PMC","",GENELIST_ERROR_ARTICLES)

### JSON PARSING is more reliable than XML
ARTICLES <- esummary( GENELIST_ERROR_ARTICLES , db="pmc" , retmode = "json"  )
ARTICLE_DATA <- reutils::content(ARTICLES,as= "parsed")
ARTICLE_DATA <- ARTICLE_DATA$result
ARTICLE_DATA <- ARTICLE_DATA[2:length(ARTICLE_DATA)]
JOURNALS <- unlist(lapply(ARTICLE_DATA,function(x) {x$fulljournalname} ))
JOURNALS_TABLE <- table(JOURNALS)
JOURNALS_TABLE <- JOURNALS_TABLE[order(-JOURNALS_TABLE)]

length(JOURNALS_TABLE)
## [1] 53
NUM_JOURNALS=length(JOURNALS_TABLE)

par(mar=c(5,25,4,2))
barplot(head(JOURNALS_TABLE,10), horiz=TRUE, las=1, 
  xlab="Articles with gene name errors in supp files",
  main="Top journals this month")

Journal of the month winner

Congrats to our Journal of the Month winner!

JOURNAL_WINNER <- names(head(JOURNALS_TABLE,1))
JOURNAL_WINNER
## [1] "Frontiers in Immunology"

Paper of the month winners

There are two categories:

  • Paper with the most suplementary files affected by gene name errors (MOST_ERR_FILES)

  • Paper with the most gene names converted to dates (MOST_ERR)

Sometimes, one paper can win both categories. Congrats to our winners.

Paper with most files affected

MOST_ERR_FILES <- gsub("PMC","",MOST_ERR_FILES)
ARTICLES <- esummary( MOST_ERR_FILES , db="pmc" , retmode = "json"  )
ARTICLE_DATA <- reutils::content(ARTICLES,as= "parsed")
ARTICLE_DATA <- ARTICLE_DATA[2]
ARTICLE_DATA
## $result
## $result$uids
## [1] "10025971"
## 
## $result$`10025971`
## $result$`10025971`$uid
## [1] "10025971"
## 
## $result$`10025971`$pubdate
## [1] "2023 Mar 2"
## 
## $result$`10025971`$epubdate
## [1] "2023 Mar 2"
## 
## $result$`10025971`$printpubdate
## [1] ""
## 
## $result$`10025971`$source
## [1] "iScience"
## 
## $result$`10025971`$authors
##     name authtype
## 1   Li J   Author
## 2   Li B   Author
## 3 Zhao R   Author
## 4   Li G   Author
## 
## $result$`10025971`$title
## [1] "Systematic analysis of the aberrances and functional implications of cuproptosis in cancer"
## 
## $result$`10025971`$volume
## [1] "26"
## 
## $result$`10025971`$issue
## [1] "4"
## 
## $result$`10025971`$pages
## [1] "106319"
## 
## $result$`10025971`$articleids
##   idtype                      value
## 1   pmid                   36950125
## 2    doi 10.1016/j.isci.2023.106319
## 3  pmcid                PMC10025971
## 
## $result$`10025971`$fulljournalname
## [1] "iScience"
## 
## $result$`10025971`$sortdate
## [1] "2023/03/02 00:00"
## 
## $result$`10025971`$pmclivedate
## [1] "2023/03/21"

Paper with most date conversions

MOST_ERR <- gsub("PMC","",MOST_ERR)
ARTICLE_DATA <- esummary(MOST_ERR,db = "pmc" , retmode = "json" )
ARTICLE_DATA <- reutils::content(ARTICLE_DATA,as= "parsed")
ARTICLE_DATA
## $header
## $header$type
## [1] "esummary"
## 
## $header$version
## [1] "0.3"
## 
## 
## $result
## $result$uids
## [1] "10010006"
## 
## $result$`10010006`
## $result$`10010006`$uid
## [1] "10010006"
## 
## $result$`10010006`$pubdate
## [1] "2023 Mar 13"
## 
## $result$`10010006`$epubdate
## [1] "2023 Mar 13"
## 
## $result$`10010006`$printpubdate
## [1] ""
## 
## $result$`10010006`$source
## [1] "Stem Cell Res Ther"
## 
## $result$`10010006`$authors
##      name authtype
## 1  Luo HT   Author
## 2    He Q   Author
## 3  Yang W   Author
## 4    He F   Author
## 5  Dong J   Author
## 6   Hu CF   Author
## 7 Yang XF   Author
## 8    Li N   Author
## 9   Li FR   Author
## 
## $result$`10010006`$title
## [1] "Single-cell analyses reveal distinct expression patterns and roles of long non-coding RNAs during hESC differentiation into pancreatic progenitors"
## 
## $result$`10010006`$volume
## [1] "14"
## 
## $result$`10010006`$issue
## [1] ""
## 
## $result$`10010006`$pages
## [1] "38"
## 
## $result$`10010006`$articleids
##   idtype                      value
## 1   pmid                   36907881
## 2    doi 10.1186/s13287-023-03259-x
## 3  pmcid                PMC10010006
## 
## $result$`10010006`$fulljournalname
## [1] "Stem Cell Research & Therapy"
## 
## $result$`10010006`$sortdate
## [1] "2023/03/13 00:00"
## 
## $result$`10010006`$pmclivedate
## [1] "2023/03/14"

Trend info

To plot the trend over the past 6-12 months.

url <- "https://ziemann-lab.net/public/gene_name_errors/"
doc <- htmlParse(url)
links <- xpathSApply(doc, "//a/@href")
links <- links[grep("html",links)]

listing <- htmlParse( getURL(url, ftp.use.epsv = FALSE, dirlistonly = TRUE) )
listing <- xpathSApply(listing, "//a/@href")
listing <- listing[grep("html",listing)]

unlink("online_files/",recursive=TRUE)

dir.create("online_files")

sapply(listing, function(mylink) { 
  download.file(paste(url,mylink,sep=""),destfile=paste("online_files/",mylink,sep=""))  
} )
## href href href href href href href href href href href href href href href href 
##    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0    0 
## href href href href href href href href href 
##    0    0    0    0    0    0    0    0    0
myfilelist <- list.files("online_files/",full.names=TRUE)

trends <- sapply(myfilelist,  function(myfilename) {

  x <- readLines(myfilename)

  # Num XL gene list articles
  NUM_GENELIST_ARTICLES <- x[grep("NUM_GENELIST_ARTICLES",x)[3]+1]
  NUM_GENELIST_ARTICLES <- sapply(strsplit(NUM_GENELIST_ARTICLES," "),"[[",3)
  NUM_GENELIST_ARTICLES <- sapply(strsplit(NUM_GENELIST_ARTICLES,"<"),"[[",1)
  NUM_GENELIST_ARTICLES <- as.numeric(NUM_GENELIST_ARTICLES)

  # number of affected articles
  NUM_ERROR_GENELIST_ARTICLES <- x[grep("NUM_ERROR_GENELIST_ARTICLES",x)[3]+1]
  NUM_ERROR_GENELIST_ARTICLES <- sapply(strsplit(NUM_ERROR_GENELIST_ARTICLES," "),"[[",3)
  NUM_ERROR_GENELIST_ARTICLES <- sapply(strsplit(NUM_ERROR_GENELIST_ARTICLES,"<"),"[[",1)
  NUM_ERROR_GENELIST_ARTICLES <- as.numeric(NUM_ERROR_GENELIST_ARTICLES)

  # Error proportion
  ERROR_PROPORTION <- x[grep("ERROR_PROPORTION",x)[3]+1]
  ERROR_PROPORTION <- sapply(strsplit(ERROR_PROPORTION," "),"[[",3)
  ERROR_PROPORTION <- sapply(strsplit(ERROR_PROPORTION,"<"),"[[",1)
  ERROR_PROPORTION <- as.numeric(ERROR_PROPORTION)

  # number of journals
  NUM_JOURNALS <- x[grep('JOURNALS_TABLE',x)[3]+1]
  NUM_JOURNALS <- sapply(strsplit(NUM_JOURNALS," "),"[[",3)
  NUM_JOURNALS <- sapply(strsplit(NUM_JOURNALS,"<"),"[[",1)
  NUM_JOURNALS <- as.numeric(NUM_JOURNALS)
  NUM_JOURNALS

  res <- c(NUM_GENELIST_ARTICLES,NUM_ERROR_GENELIST_ARTICLES,ERROR_PROPORTION,NUM_JOURNALS)

  return(res)
})

colnames(trends) <- sapply(strsplit(colnames(trends),"_"),"[[",3)
colnames(trends) <- gsub(".html","",colnames(trends))
trends <- as.data.frame(trends)
rownames(trends) <- c("NUM_GENELIST_ARTICLES","NUM_ERROR_GENELIST_ARTICLES","ERROR_PROPORTION","NUM_JOURNALS")
trends <- t(trends)
trends <- as.data.frame(trends)

CURRENT_RES <- c(NUM_GENELIST_ARTICLES,NUM_ERROR_GENELIST_ARTICLES,ERROR_PROPORTION,NUM_JOURNALS)

trends <- rbind(trends,CURRENT_RES)
paste(CURRENT_YEAR,CURRENT_MONTH,sep="-")
## [1] "2023-04"
rownames(trends)[nrow(trends)] <- paste(CURRENT_YEAR,CURRENT_MONTH,sep="-")

plot(trends$NUM_GENELIST_ARTICLES, xaxt = "n" , type="b" , main="Number of articles with Excel gene lists per month",
 ylab="number of articles", xlab="month")
axis(1, at=1:nrow(trends), labels=rownames(trends))

plot(trends$NUM_ERROR_GENELIST_ARTICLES, xaxt = "n" , type="b" , main="Number of articles with gene name errors per month",
 ylab="number of articles", xlab="month")
axis(1, at=1:nrow(trends), labels=rownames(trends))

plot(trends$ERROR_PROPORTION, xaxt = "n" , type="b" , main="Proportion of articles with Excel gene list affected by errors",
 ylab="proportion", xlab="month")
axis(1, at=1:nrow(trends), labels=rownames(trends))

plot(trends$NUM_JOURNALS, xaxt = "n" , type="b" , main="Number of journals with affected articles",
 ylab="number of journals", xlab="month")
axis(1, at=1:nrow(trends), labels=rownames(trends))

unlink("online_files/",recursive=TRUE)

References

  1. Zeeberg, B.R., Riss, J., Kane, D.W. et al. Mistaken Identifiers: Gene name errors can be introduced inadvertently when using Excel in bioinformatics. BMC Bioinformatics 5, 80 (2004). https://doi.org/10.1186/1471-2105-5-80

  2. Ziemann, M., Eren, Y. & El-Osta, A. Gene name errors are widespread in the scientific literature. Genome Biol 17, 177 (2016). https://doi.org/10.1186/s13059-016-1044-7

SessionInfo

sessionInfo()
## R version 4.2.3 (2023-03-15)
## Platform: x86_64-pc-linux-gnu (64-bit)
## Running under: Ubuntu 22.04.2 LTS
## 
## Matrix products: default
## BLAS:   /usr/lib/x86_64-linux-gnu/blas/libblas.so.3.10.0
## LAPACK: /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3.10.0
## 
## locale:
##  [1] LC_CTYPE=en_AU.UTF-8       LC_NUMERIC=C              
##  [3] LC_TIME=en_AU.UTF-8        LC_COLLATE=en_AU.UTF-8    
##  [5] LC_MONETARY=en_AU.UTF-8    LC_MESSAGES=en_AU.UTF-8   
##  [7] LC_PAPER=en_AU.UTF-8       LC_NAME=C                 
##  [9] LC_ADDRESS=C               LC_TELEPHONE=C            
## [11] LC_MEASUREMENT=en_AU.UTF-8 LC_IDENTIFICATION=C       
## 
## attached base packages:
## [1] stats     graphics  grDevices utils     datasets  methods   base     
## 
## other attached packages:
## [1] RCurl_1.98-1.10 readxl_1.4.2    reutils_0.2.3   xml2_1.3.3     
## [5] jsonlite_1.8.4  XML_3.99-0.13  
## 
## loaded via a namespace (and not attached):
##  [1] assertthat_0.2.1 digest_0.6.31    bitops_1.0-7     cellranger_1.1.0
##  [5] R6_2.5.1         evaluate_0.20    highr_0.10       rlang_1.1.0     
##  [9] cachem_1.0.7     cli_3.6.0        jquerylib_0.1.4  bslib_0.4.2     
## [13] rmarkdown_2.20   tools_4.2.3      xfun_0.37        yaml_2.3.7      
## [17] fastmap_1.1.1    compiler_4.2.3   htmltools_0.5.4  knitr_1.42      
## [21] sass_0.4.5