Gene Name Error Monthly Dashboard
Mark Ziemann
2026-07-27
Source: https://github.com/markziemann/GeneNameErrors2020
View the reports: http://ziemann-lab.net/public/gene_name_errors/
Intro
Gene name errors result when data are imported improperly into MS Excel and other spreadsheet programs (Zeeberg et al, 2004). Certain gene names like MARCH3, SEPT2 and DEC1 are converted into date format. These errors are surprisingly common in supplementary data files in the field of genomics (Ziemann et al, 2016). This could be considered a small error because it only affects a small number of genes, however it is symptomtic of poor data processing methods. The purpose of this script is to identify gene name errors present in supplementary files of PubMed Central articles in the previous month.
library("jsonlite")
library("xml2")
library("reutils")
library("readxl")Get PMC IDs
Here I will be getting PubMed Central IDs for the previous month.
Start with figuring out the date to search PubMed Central.
DATE="2026/2"
#2024-06Let’s see how many PMC IDs we have in the past month.
QUERY ='((genom*[Title/Abstract]))'
ESEARCH_RES <- esearch(term=QUERY, db = "pmc", rettype = "uilist", retmode = "xml", retstart = 0,
retmax = 5000000, usehistory = TRUE, webenv = NULL, querykey = NULL, sort = NULL, field = NULL,
datetype = NULL, reldate = NULL, mindate = DATE, maxdate = DATE)
pmc <- efetch(ESEARCH_RES,retmode="text",rettype="uilist",outfile="pmcids.txt")## Retrieving UIDs 1 to 500## Retrieving UIDs 501 to 1000## Retrieving UIDs 1001 to 1500## Retrieving UIDs 1501 to 2000## Retrieving UIDs 2001 to 2500## Retrieving UIDs 2501 to 3000## Retrieving UIDs 3001 to 3500## Retrieving UIDs 3501 to 4000## Retrieving UIDs 4001 to 4500## Retrieving UIDs 4501 to 5000pmc <- read.table(pmc)
pmc <- paste("PMC",pmc$V1,sep="")
NUM_ARTICLES=length(pmc)
NUM_ARTICLES## [1] 4627writeLines(pmc,con="pmc.txt")Run the screen
Now run the bash script. As PMC has changed and restricts scraping journal articles, it is best to use the dedicated utility called pygetpapers for the download.
Note that false positives can occur (~1.5%) and these results have not been verified by a human.
Here are some definitions:
NUM_XLS = Number of supplementary Excel files in this set of PMC articles.
NUM_XLS_ARTICLES = Number of articles matching the PubMed Central search which have supplementary Excel files.
GENELISTS = The gene lists found in the Excel files. Each Excel file is counted once even it has multiple gene lists.
NUM_GENELISTS = The number of Excel files with gene lists.
NUM_GENELIST_ARTICLES = The number of PMC articles with supplementary Excel gene lists.
ERROR_GENELISTS = Files suspected to contain gene name errors. The dates and five-digit numbers indicate transmogrified gene names.
NUM_ERROR_GENELISTS = Number of Excel gene lists with errors.
NUM_ERROR_GENELIST_ARTICLES = Number of articles with supplementary Excel gene name errors.
ERROR_PROPORTION = This is the proportion of articles with Excel gene lists that have errors.
system("./gene_names.sh pmc.txt")
results <- readLines("results.txt")
XLS <- results[grep("XLS",results,ignore.case=TRUE)]
NUM_XLS = length(XLS)
NUM_XLS## [1] 88778NUM_XLS_ARTICLES = length(unique(sapply(strsplit(XLS," "),"[[",1)))
NUM_XLS_ARTICLES## [1] 1614GENELISTS <- XLS[lapply(strsplit(XLS," "),length)>2]
#GENELISTS
NUM_GENELISTS <- length(unique(sapply(strsplit(GENELISTS," "),"[[",2)))
NUM_GENELISTS## [1] 821NUM_GENELIST_ARTICLES <- length(unique(sapply(strsplit(GENELISTS," "),"[[",1)))
NUM_GENELIST_ARTICLES## [1] 438ERROR_GENELISTS <- XLS[lapply(strsplit(XLS," "),length)>3]
#ERROR_GENELISTS
NUM_ERROR_GENELISTS = length(ERROR_GENELISTS)
NUM_ERROR_GENELISTS## [1] 415GENELIST_ERROR_ARTICLES <- unique(sapply(strsplit(ERROR_GENELISTS," "),"[[",1))
GENELIST_ERROR_ARTICLES## [1] "PMC12946660" "PMC12945842" "PMC12945694" "PMC12937152" "PMC12940889"
## [6] "PMC12941178" "PMC12941274" "PMC12940610" "PMC12937145" "PMC12935552"
## [11] "PMC12820784" "PMC12932945" "PMC12934198" "PMC12933083" "PMC12931692"
## [16] "PMC12928591" "PMC12926300" "PMC12926193" "PMC12928696" "PMC12924462"
## [21] "PMC12924553" "PMC12923846" "PMC12812445" "PMC12918127" "PMC12918038"
## [26] "PMC12915624" "PMC12915786" "PMC12916010" "PMC12915790" "PMC12914052"
## [31] "PMC12909304" "PMC12911300" "PMC12910984" "PMC12909639" "PMC12909843"
## [36] "PMC12908926" "PMC12908806" "PMC12908361" "PMC12904788" "PMC12904206"
## [41] "PMC12901234" "PMC12898238" "PMC12899871" "PMC12896660" "PMC12895973"
## [46] "PMC12900434" "PMC12895049" "PMC12895643" "PMC12891661" "PMC12886973"
## [51] "PMC12888919" "PMC12883303" "PMC12884834" "PMC12884627" "PMC12881479"
## [56] "PMC12881478" "PMC12879437" "PMC12877124" "PMC12877394" "PMC12874802"
## [61] "PMC12872948" "PMC12873371" "PMC12873423" "PMC12874702" "PMC12868714"
## [66] "PMC12868704" "PMC12869038" "PMC12869290" "PMC12867268" "PMC12866162"
## [71] "PMC12864151" "PMC12861156" "PMC12861072" "PMC12860274" "PMC12858702"
## [76] "PMC12858516" "PMC12315878" "PMC12315868"NUM_ERROR_GENELIST_ARTICLES <- length(GENELIST_ERROR_ARTICLES)
NUM_ERROR_GENELIST_ARTICLES## [1] 78ERROR_PROPORTION = NUM_ERROR_GENELIST_ARTICLES / NUM_GENELIST_ARTICLES
ERROR_PROPORTION## [1] 0.1780822Look at the errors detected
Here you can have a look at all the gene lists detected in the past month, as well as those with errors. The dates are obvious errors, these are commonly dates in September, March, December and October. The five-digit numbers represent dates as they are encoded in the Excel internal format. The five digit number is the number of days since 1900. If you were to take these numbers and put them into Excel and format the cells as dates, then these will also mostly map to dates in September, March, December and October.
#GENELISTS
ERROR_GENELISTS## [1] "PMC12946660 PMC_DL/PMC12946660/supplementaryfiles/MCO2-7-e70629-s001.xlsx Hsapiens 3 45179 45172 45170"
## [2] "PMC12945842 PMC_DL/PMC12945842/supplementaryfiles/Table4.xlsx Hsapiens 25 45905 45905 45901 45907 45718 45907 45722 45724 45906 45718 45911 45909 45906 45722 45719 45723 45909 45904 45724 45903 45911 45992 45719 45726 45726"
## [3] "PMC12945694 PMC_DL/PMC12945694/supplementaryfiles/42255_2025_1443_MOESM9_ESM.xlsx Mmusculus 10 45901 45909 45717 45723 45718 45724 45911 45908 45719 45907"
## [4] "PMC12937152 PMC_DL/PMC12937152/supplementaryfiles/mmc3.xlsx Hsapiens 13 15-Sep 8-Sep 7-Sep 10-Sep 2-Sep 11-Sep 1-Mar 9-Sep 6-Sep 5-Sep 5-Mar 4-Sep 2-Mar"
## [5] "PMC12940889 zip/supplemental_file2_DEGs.xlsx Hsapiens 28 45908 45726 45915 45717 45720 45911 45904 45903 45718 45724 45907 45909 45914 45902 45723 45717 45721 45722 45718 45910 45725 45719 45901 45905 45901 45992 45727 45912"
## [6] "PMC12941178 zip/Supplementary_Tables.xlsx Hsapiens 1 45717"
## [7] "PMC12941274 zip/Table_S7.xls Celegans 8 2025/06/01 2025/06/01 2025/06/01 2025/06/01 2025/06/01 2025/06/01 2025/06/01 2025/06/01"
## [8] "PMC12940610 zip/Table_S4.xlsx Hsapiens 8 44621 44624 44811 44621 44631 44814 44814 44813"
## [9] "PMC12940610 zip/Table_S2.xlsx Ggallus 4 44808 44811 44811 44623"
## [10] "PMC12937145 PMC_DL/PMC12937145/supplementaryfiles/mmc1.xlsx Hsapiens 31 45904 45909 45908 45721 45907 45902 45902 45719 45721 45909 45723 45908 45911 45902 45719 45911 45721 45718 45908 45909 45902 45721 45717 45723 45911 45718 45906 45906 45901 45909 45902"
## [11] "PMC12935552 PMC_DL/PMC12935552/supplementaryfiles/41586_2025_9943_MOESM4_ESM.xlsx Hsapiens 16 38596 37226 39692 41883 37012 42248 38961 40422 37865 37135 39326 38231 40787 41153 40057 37500"
## [12] "PMC12820784 PMC_DL/PMC12820784/supplementaryfiles/41586_2025_9907_MOESM4_ESM.xlsx Hsapiens 14 44256 44257 44258 44260 44261 44263 44440 44441 44443 44445 44446 44448 44453 44531"
## [13] "PMC12932945 zip/Table_S1.xlsx Hsapiens 26 45541 45352 45353 45356 45538 45536 45547 45355 45362 45627 45537 45546 45360 45549 45358 45359 45361 45542 45544 45354 45540 45539 45545 45357 45543 45550"
## [14] "PMC12934198 PMC_DL/PMC12934198/supplementaryfiles/MEC-35-e70271-s006.xlsx Ggallus 4 44084 44084 44084 44084"
## [15] "PMC12933083 PMC_DL/PMC12933083/supplementaryfiles/pnas.2523254123.sd04.xlsx Rnorvegicus 1 45718"
## [16] "PMC12931692 PMC_DL/PMC12931692/supplementaryfiles/KGMI_A_2587402_SM8238.xlsx Hsapiens 4 40422 40787 37865 38231"
## [17] "PMC12931692 PMC_DL/PMC12931692/supplementaryfiles/KGMI_A_2587402_SM8238.xlsx Hsapiens 14 38596 37316 40057 41153 38231 40787 39326 39692 37135 41883 40422 37500 38961 37865"
## [18] "PMC12931692 PMC_DL/PMC12931692/supplementaryfiles/KGMI_A_2587402_SM8238.xlsx Hsapiens 14 38596 37316 40057 41153 38231 40787 39326 39692 37135 41883 40422 37500 38961 37865"
## [19] "PMC12931692 PMC_DL/PMC12931692/supplementaryfiles/KGMI_A_2587402_SM8238.xlsx Hsapiens 5 38596 38231 40787 40422 37865"
## [20] "PMC12931692 PMC_DL/PMC12931692/supplementaryfiles/KGMI_A_2587402_SM8238.xlsx Hsapiens 4 40422 40787 37865 38231"
## [21] "PMC12931692 PMC_DL/PMC12931692/supplementaryfiles/KGMI_A_2587402_SM8238.xlsx Hsapiens 4 40422 40787 37865 38231"
## [22] "PMC12931692 PMC_DL/PMC12931692/supplementaryfiles/KGMI_A_2587402_SM8238.xlsx Hsapiens 4 40422 40787 37865 38231"
## [23] "PMC12931692 PMC_DL/PMC12931692/supplementaryfiles/KGMI_A_2587402_SM8238.xlsx Hsapiens 4 40422 40787 37865 38231"
## [24] "PMC12928591 PMC_DL/PMC12928591/supplementaryfiles/pbio.3003663.s007.xlsx Dmelanogaster 1 38412"
## [25] "PMC12926300 PMC_DL/PMC12926300/supplementaryfiles/mmc16.xlsx Hsapiens 4 38231 36951 36951 38231"
## [26] "PMC12926193 PMC_DL/PMC12926193/supplementaryfiles/mmc6.xlsx Hsapiens 2 45354 45352"
## [27] "PMC12926193 PMC_DL/PMC12926193/supplementaryfiles/mmc12.xlsx Hsapiens 52 45358 45537 45537 45537 45537 45537 45537 45537 45537 45537 45537 45537 45537 45537 45537 45537 45358 45537 45537 45537 45537 45537 45537 45537 45537 45537 45537 45537 45537 45537 45537 45537 45358 45358 45358 45358 45358 45537 45537 45537 45537 45537 45537 45537 45537 45537 45537 45537 45537 45537 45537 45537"
## [28] "PMC12926193 PMC_DL/PMC12926193/supplementaryfiles/mmc10.xlsx Hsapiens 1 45352"
## [29] "PMC12926193 PMC_DL/PMC12926193/supplementaryfiles/mmc3.xlsx Hsapiens 2 45354 45352"
## [30] "PMC12926193 PMC_DL/PMC12926193/supplementaryfiles/mmc3.xlsx Hsapiens 1 45360"
## [31] "PMC12926193 PMC_DL/PMC12926193/supplementaryfiles/mmc3.xlsx Hsapiens 1 45546"
## [32] "PMC12926193 PMC_DL/PMC12926193/supplementaryfiles/mmc3.xlsx Hsapiens 1 45536"
## [33] "PMC12926193 PMC_DL/PMC12926193/supplementaryfiles/mmc3.xlsx Hsapiens 1 45541"
## [34] "PMC12926193 PMC_DL/PMC12926193/supplementaryfiles/mmc3.xlsx Hsapiens 1 45352"
## [35] "PMC12926193 PMC_DL/PMC12926193/supplementaryfiles/mmc3.xlsx Hsapiens 1 45359"
## [36] "PMC12926193 PMC_DL/PMC12926193/supplementaryfiles/mmc3.xlsx Hsapiens 2 45544 45536"
## [37] "PMC12926193 PMC_DL/PMC12926193/supplementaryfiles/mmc3.xlsx Hsapiens 1 45546"
## [38] "PMC12926193 PMC_DL/PMC12926193/supplementaryfiles/mmc3.xlsx Hsapiens 1 45541"
## [39] "PMC12928696 zip/1-s2.0-S875632822500331X-mmc2.xlsx Hsapiens 8 45537 45540 45544 45543 45353 45546 45549 45362"
## [40] "PMC12924462 PMC_DL/PMC12924462/supplementaryfiles/13059_2026_3967_MOESM2_ESM.xlsx Hsapiens 22 38596 40057 38231 37316 39873 39692 39508 38777 38961 40787 37316 36951 37135 38412 37865 36951 37500 40422 37681 39326 39142 37226"
## [41] "PMC12924462 PMC_DL/PMC12924462/supplementaryfiles/13059_2026_3967_MOESM2_ESM.xlsx Hsapiens 22 38596 40057 38231 37316 39873 39692 39508 38777 38961 40787 37316 36951 37135 38412 37865 36951 37500 40422 37681 39326 39142 37226"
## [42] "PMC12924553 PMC_DL/PMC12924553/supplementaryfiles/13059_2025_3898_MOESM2_ESM.xls Hsapiens 6 45352 45356 45360 45539 45544 45358"
## [43] "PMC12924553 PMC_DL/PMC12924553/supplementaryfiles/13059_2025_3898_MOESM7_ESM.xls Hsapiens 2 45909 45723"
## [44] "PMC12924553 PMC_DL/PMC12924553/supplementaryfiles/13059_2025_3898_MOESM5_ESM.xls Hsapiens 2 45544 45539"
## [45] "PMC12924553 PMC_DL/PMC12924553/supplementaryfiles/13059_2025_3898_MOESM8_ESM.xlsx Hsapiens 6 45352 45539 45544 45356 45360 45358"
## [46] "PMC12924553 PMC_DL/PMC12924553/supplementaryfiles/13059_2025_3898_MOESM4_ESM.xls Hsapiens 2 45909 45717"
## [47] "PMC12923846 PMC_DL/PMC12923846/supplementaryfiles/41467_2026_68592_MOESM13_ESM.xlsx Celegans 16 38047 38047 38047 37135 37135 37135 37135 36982 38777 37043 37043 37043 37316 38412 38412 37530"
## [48] "PMC12923846 PMC_DL/PMC12923846/supplementaryfiles/41467_2026_68592_MOESM14_ESM.xlsx Celegans 23 38047 38047 38047 38047 38047 37135 37135 37135 37135 36982 37681 38777 38777 37043 37043 37043 37043 37316 38412 38412 38412 37530 37530"
## [49] "PMC12812445 PMC_DL/PMC12812445/supplementaryfiles/41551_2025_1464_MOESM9_ESM.xlsx Ggallus 12 DCTPP1-SEPHS2 LINC01963-MARCHF4 STXBP6-NOVA1 STXBP6-NOVA1 MARCHF5-MARK2P9 STXBP6-NOVA1 STXBP6-NOVA1 FKBP9P1-SEPTIN14 AVPI1-MARVELD1 LINC00895-SEPTIN5 MYSM1-JUN EIF5-MARK3"
## [50] "PMC12812445 PMC_DL/PMC12812445/supplementaryfiles/41551_2025_1464_MOESM9_ESM.xlsx Ggallus 10 DCTPP1-SEPHS2 STXBP6-NOVA1 STXBP6-NOVA1 LINC00895-SEPTIN5 STXBP6-NOVA1 MARCHF5-MARK2P9 LINC01963-MARCHF4 STXBP6-NOVA1 FKBP9P1-SEPTIN14 STXBP6-NOVA1"
## [51] "PMC12812445 PMC_DL/PMC12812445/supplementaryfiles/41551_2025_1464_MOESM9_ESM.xlsx Ggallus 8 DCTPP1-SEPHS2 STXBP6-NOVA1 STXBP6-NOVA1 LINC00895-SEPTIN5 LINC01963-MARCHF4 STXBP6-NOVA1 MARCHF5-MARK2P9 FKBP9P1-SEPTIN14"
## [52] "PMC12812445 PMC_DL/PMC12812445/supplementaryfiles/41551_2025_1464_MOESM9_ESM.xlsx Hsapiens 8 DCTPP1-SEPHS2 LINC01963-MARCHF4 MARCHF5-MARK2P9 STXBP6-NOVA1 LINC00895-SEPTIN5 STXBP6-NOVA1 STXBP6-NOVA1 STXBP6-NOVA1"
## [53] "PMC12812445 PMC_DL/PMC12812445/supplementaryfiles/41551_2025_1464_MOESM9_ESM.xlsx Ggallus 11 DCTPP1-SEPHS2 STXBP6-NOVA1 MARCHF5-MARK2P9 LINC01963-MARCHF4 STXBP6-NOVA1 STXBP6-NOVA1 STXBP6-NOVA1 AVPI1-MARVELD1 FKBP9P1-SEPTIN14 SEC14L1-SEPTIN9-DT.2 EIF5-MARK3"
## [54] "PMC12812445 PMC_DL/PMC12812445/supplementaryfiles/41551_2025_1464_MOESM9_ESM.xlsx Ggallus 10 DCTPP1-SEPHS2 LINC01963-MARCHF4 MARCHF5-MARK2P9 STXBP6-NOVA1 STXBP6-NOVA1 STXBP6-NOVA1 FKBP9P1-SEPTIN14 STXBP6-NOVA1 STXBP6-NOVA1 STXBP6-NOVA1"
## [55] "PMC12812445 PMC_DL/PMC12812445/supplementaryfiles/41551_2025_1464_MOESM9_ESM.xlsx Hsapiens 9 STXBP6-NOVA1 MARCHF5-MARK2P9 LINC01963-MARCHF4 STXBP6-NOVA1 STXBP6-NOVA1 DCTPP1-SEPHS2 AVPI1-MARVELD1 FKBP9P1-SEPTIN14 STXBP6-NOVA1"
## [56] "PMC12812445 PMC_DL/PMC12812445/supplementaryfiles/41551_2025_1464_MOESM9_ESM.xlsx Ggallus 10 MARCHF5-MARK2P9 LINC01963-MARCHF4 DCTPP1-SEPHS2 STXBP6-NOVA1 STXBP6-NOVA1 STXBP6-NOVA1 STXBP6-NOVA1 FKBP9P1-SEPTIN14 FKBP9P1-SEPTIN14 AVPI1-MARVELD1"
## [57] "PMC12812445 PMC_DL/PMC12812445/supplementaryfiles/41551_2025_1464_MOESM9_ESM.xlsx Ggallus 9 STXBP6-NOVA1 MARCHF5-MARK2P9 STXBP6-NOVA1 LINC01963-MARCHF4 DCTPP1-SEPHS2 STXBP6-NOVA1 STXBP6-NOVA1 FKBP9P1-SEPTIN14 STXBP6-NOVA1"
## [58] "PMC12918127 PMC_DL/PMC12918127/supplementaryfiles/12915_2026_2505_MOESM2_ESM.xlsx Scerevisiae 1 45931"
## [59] "PMC12918038 PMC_DL/PMC12918038/supplementaryfiles/12876_2026_4624_MOESM2_ESM.xlsx Hsapiens 7 45723 45718 45724 45719 45718 45717 45717"
## [60] "PMC12918038 PMC_DL/PMC12918038/supplementaryfiles/12876_2026_4624_MOESM2_ESM.xlsx Hsapiens 10 45723 45718 45719 45724 45722 45717 45718 45721 45717 45725"
## [61] "PMC12915624 zip/sciadv.aea6079_table_s5.xlsx Hsapiens 4 10357 10431 57714 90288"
## [62] "PMC12915624 zip/sciadv.aea6079_table_s5.xlsx Hsapiens 4 10357 10431 57714 90288"
## [63] "PMC12915624 zip/sciadv.aea6079_table_s5.xlsx Hsapiens 3 10357 10431 57714"
## [64] "PMC12915624 zip/sciadv.aea6079_table_s5.xlsx Hsapiens 4 10357 10431 57714 90288"
## [65] "PMC12915786 zip/SupplementaryTables.xlsx Hsapiens 3 45901 45909 45911"
## [66] "PMC12915786 zip/SupplementaryTables.xlsx Hsapiens 1 45901"
## [67] "PMC12916010 zip/Supplementary_Table_10.xlsx Hsapiens 1 45359"
## [68] "PMC12916010 zip/Supplementary_Table_10.xlsx Hsapiens 1 45357"
## [69] "PMC12916010 zip/Supplementary_Table_4.xlsx Hsapiens 3 45359 45353 45358"
## [70] "PMC12916010 zip/Supplementary_Table_4.xlsx Hsapiens 7 45537 45359 45357 45542 45357 45359 45542"
## [71] "PMC12916010 zip/Supplementary_Table_4.xlsx Hsapiens 1 45359"
## [72] "PMC12916010 zip/Supplementary_Table_4.xlsx Hsapiens 4 45537 45359 45357 45542"
## [73] "PMC12916010 zip/Supplementary_Table_4.xlsx Hsapiens 1 45359"
## [74] "PMC12916010 zip/Supplementary_Table_4.xlsx Hsapiens 3 45357 45359 45542"
## [75] "PMC12916010 zip/Supplementary_Table_4.xlsx Ggallus 1 45359"
## [76] "PMC12916010 zip/Supplementary_Table_4.xlsx Hsapiens 1 45353"
## [77] "PMC12916010 zip/Supplementary_Table_4.xlsx Hsapiens 1 45542"
## [78] "PMC12916010 zip/Supplementary_Table_4.xlsx Hsapiens 1 45542"
## [79] "PMC12916010 zip/Supplementary_Table_4.xlsx Hsapiens 2 45358 45359"
## [80] "PMC12916010 zip/Supplementary_Table_4.xlsx Hsapiens 1 45358"
## [81] "PMC12916010 zip/Supplementary_Table_4.xlsx Hsapiens 1 45542"
## [82] "PMC12916010 zip/Supplementary_Table_4.xlsx Hsapiens 1 45358"
## [83] "PMC12916010 zip/Supplementary_Table_4.xlsx Hsapiens 1 45542"
## [84] "PMC12916010 zip/Supplementary_Table_4.xlsx Hsapiens 6 45358 45359 45357 45359 45358 45353"
## [85] "PMC12916010 zip/Supplementary_Table_4.xlsx Hsapiens 6 45358 45359 45357 45359 45358 45353"
## [86] "PMC12916010 zip/Supplementary_Table_4.xlsx Hsapiens 3 45358 45359 45357"
## [87] "PMC12916010 zip/Supplementary_Table_4.xlsx Ggallus 2 45359 45358"
## [88] "PMC12916010 zip/Supplementary_Table_4.xlsx Hsapiens 3 45358 45359 45353"
## [89] "PMC12916010 zip/Supplementary_Table_4.xlsx Hsapiens 2 45359 45358"
## [90] "PMC12916010 zip/Supplementary_Table_4.xlsx Hsapiens 2 45358 45359"
## [91] "PMC12916010 zip/Supplementary_Table_4.xlsx Hsapiens 1 45358"
## [92] "PMC12916010 zip/Supplementary_Table_4.xlsx Hsapiens 1 45358"
## [93] "PMC12916010 zip/Supplementary_Table_4.xlsx Hsapiens 3 45359 45353 45358"
## [94] "PMC12916010 zip/Supplementary_Table_4.xlsx Hsapiens 3 45359 45353 45358"
## [95] "PMC12916010 zip/Supplementary_Table_4.xlsx Hsapiens 1 45359"
## [96] "PMC12916010 zip/Supplementary_Table_4.xlsx Hsapiens 1 45353"
## [97] "PMC12916010 zip/Supplementary_Table_4.xlsx Hsapiens 1 45353"
## [98] "PMC12916010 zip/Supplementary_Table_4.xlsx Hsapiens 3 45359 45358 45353"
## [99] "PMC12916010 zip/Supplementary_Table_4.xlsx Hsapiens 2 45358 45353"
## [100] "PMC12916010 zip/Supplementary_Table_4.xlsx Hsapiens 2 45358 45353"
## [101] "PMC12916010 zip/Supplementary_Table_4.xlsx Hsapiens 3 45359 45353 45358"
## [102] "PMC12916010 zip/Supplementary_Table_4.xlsx Hsapiens 5 45358 45359 45357 45358 45359"
## [103] "PMC12916010 zip/Supplementary_Table_4.xlsx Hsapiens 3 45358 45359 45357"
## [104] "PMC12916010 zip/Supplementary_Table_4.xlsx Hsapiens 1 45359"
## [105] "PMC12916010 zip/Supplementary_Table_4.xlsx Hsapiens 1 45358"
## [106] "PMC12916010 zip/Supplementary_Table_4.xlsx Hsapiens 1 45353"
## [107] "PMC12916010 zip/Supplementary_Table_4.xlsx Hsapiens 2 45358 45359"
## [108] "PMC12916010 zip/Supplementary_Table_4.xlsx Hsapiens 2 45358 45359"
## [109] "PMC12916010 zip/Supplementary_Table_4.xlsx Hsapiens 2 45358 45359"
## [110] "PMC12916010 zip/Supplementary_Table_4.xlsx Hsapiens 1 45358"
## [111] "PMC12916010 zip/Supplementary_Table_4.xlsx Hsapiens 1 45358"
## [112] "PMC12916010 zip/Supplementary_Table_4.xlsx Hsapiens 9 45542 45537 45359 45357 45544 45537 45542 45359 45357"
## [113] "PMC12916010 zip/Supplementary_Table_4.xlsx Hsapiens 9 45542 45537 45359 45357 45544 45537 45542 45359 45357"
## [114] "PMC12916010 zip/Supplementary_Table_4.xlsx Hsapiens 5 45542 45537 45359 45357 45544"
## [115] "PMC12916010 zip/Supplementary_Table_4.xlsx Hsapiens 4 45537 45542 45359 45357"
## [116] "PMC12916010 zip/Supplementary_Table_4.xlsx Hsapiens 3 45542 45537 45357"
## [117] "PMC12916010 zip/Supplementary_Table_4.xlsx Hsapiens 3 45537 45542 45357"
## [118] "PMC12916010 zip/Supplementary_Table_4.xlsx Hsapiens 3 45542 45537 45357"
## [119] "PMC12916010 zip/Supplementary_Table_4.xlsx Hsapiens 3 45542 45537 45357"
## [120] "PMC12916010 zip/Supplementary_Table_4.xlsx Hsapiens 3 45542 45537 45357"
## [121] "PMC12916010 zip/Supplementary_Table_4.xlsx Hsapiens 9 45537 45537 45359 45357 45542 45546 45359 45357 45542"
## [122] "PMC12916010 zip/Supplementary_Table_4.xlsx Hsapiens 1 45537"
## [123] "PMC12916010 zip/Supplementary_Table_4.xlsx Hsapiens 8 45537 45359 45357 45542 45546 45359 45357 45542"
## [124] "PMC12916010 zip/Supplementary_Table_4.xlsx Hsapiens 4 45537 45359 45357 45542"
## [125] "PMC12916010 zip/Supplementary_Table_4.xlsx Hsapiens 4 45546 45359 45357 45542"
## [126] "PMC12916010 zip/Supplementary_Table_4.xlsx Hsapiens 1 45542"
## [127] "PMC12916010 zip/Supplementary_Table_4.xlsx Hsapiens 1 45537"
## [128] "PMC12916010 zip/Supplementary_Table_4.xlsx Hsapiens 2 45542 45359"
## [129] "PMC12916010 zip/Supplementary_Table_4.xlsx Hsapiens 1 45537"
## [130] "PMC12916010 zip/Supplementary_Table_4.xlsx Hsapiens 1 45359"
## [131] "PMC12916010 zip/Supplementary_Table_4.xlsx Hsapiens 1 45537"
## [132] "PMC12916010 zip/Supplementary_Table_4.xlsx Hsapiens 1 45542"
## [133] "PMC12916010 zip/Supplementary_Table_4.xlsx Hsapiens 1 45537"
## [134] "PMC12916010 zip/Supplementary_Table_4.xlsx Hsapiens 2 45359 45542"
## [135] "PMC12916010 zip/Supplementary_Table_4.xlsx Hsapiens 7 45537 45359 45357 45542 45357 45359 45542"
## [136] "PMC12916010 zip/Supplementary_Table_4.xlsx Hsapiens 4 45544 45537 45357 45542"
## [137] "PMC12916010 zip/Supplementary_Table_4.xlsx Hsapiens 4 45537 45359 45357 45542"
## [138] "PMC12916010 zip/Supplementary_Table_4.xlsx Hsapiens 1 45544"
## [139] "PMC12916010 zip/Supplementary_Table_4.xlsx Hsapiens 3 45357 45359 45542"
## [140] "PMC12916010 zip/Supplementary_Table_4.xlsx Hsapiens 1 45537"
## [141] "PMC12916010 zip/Supplementary_Table_4.xlsx Hsapiens 1 45542"
## [142] "PMC12916010 zip/Supplementary_Table_4.xlsx Hsapiens 2 45357 45537"
## [143] "PMC12916010 zip/Supplementary_Table_4.xlsx Hsapiens 1 45542"
## [144] "PMC12916010 zip/Supplementary_Table_4.xlsx Hsapiens 2 45357 45537"
## [145] "PMC12916010 zip/Supplementary_Table_4.xlsx Hsapiens 3 45357 45537 45542"
## [146] "PMC12916010 zip/Supplementary_Table_4.xlsx Hsapiens 1 45542"
## [147] "PMC12916010 zip/Supplementary_Table_4.xlsx Hsapiens 2 45357 45537"
## [148] "PMC12916010 zip/Supplementary_Table_4.xlsx Hsapiens 1 45542"
## [149] "PMC12916010 zip/Supplementary_Table_4.xlsx Hsapiens 2 45357 45537"
## [150] "PMC12916010 zip/Supplementary_Table_5.xlsx Hsapiens 1 45358"
## [151] "PMC12916010 zip/Supplementary_Table_5.xlsx Hsapiens 1 45545"
## [152] "PMC12916010 zip/Supplementary_Table_5.xlsx Hsapiens 1 45358"
## [153] "PMC12916010 zip/Supplementary_Table_5.xlsx Hsapiens 1 45545"
## [154] "PMC12916010 zip/Supplementary_Table_5.xlsx Ggallus 2 45358 45359"
## [155] "PMC12916010 zip/Supplementary_Table_5.xlsx Ggallus 2 45358 45359"
## [156] "PMC12916010 zip/Supplementary_Table_5.xlsx Hsapiens 2 45358 45359"
## [157] "PMC12916010 zip/Supplementary_Table_5.xlsx Hsapiens 1 45358"
## [158] "PMC12916010 zip/Supplementary_Table_5.xlsx Hsapiens 3 45362 45357 45358"
## [159] "PMC12916010 zip/Supplementary_Table_5.xlsx Hsapiens 2 45362 45357"
## [160] "PMC12916010 zip/Supplementary_Table_5.xlsx Hsapiens 1 45358"
## [161] "PMC12916010 zip/Supplementary_Table_5.xlsx Hsapiens 1 45362"
## [162] "PMC12916010 zip/Supplementary_Table_5.xlsx Hsapiens 1 45357"
## [163] "PMC12916010 zip/Supplementary_Table_5.xlsx Ggallus 1 45358"
## [164] "PMC12916010 zip/Supplementary_Table_5.xlsx Hsapiens 1 45358"
## [165] "PMC12916010 zip/Supplementary_Table_5.xlsx Hsapiens 2 45358 45359"
## [166] "PMC12916010 zip/Supplementary_Table_5.xlsx Hsapiens 2 45358 45359"
## [167] "PMC12916010 zip/Supplementary_Table_5.xlsx Hsapiens 1 45358"
## [168] "PMC12916010 zip/Supplementary_Table_5.xlsx Hsapiens 8 45357 45542 45359 45537 45357 45542 45359 45545"
## [169] "PMC12916010 zip/Supplementary_Table_5.xlsx Hsapiens 7 45357 45542 45359 45537 45357 45542 45359"
## [170] "PMC12916010 zip/Supplementary_Table_5.xlsx Hsapiens 1 45545"
## [171] "PMC12916010 zip/Supplementary_Table_5.xlsx Hsapiens 4 45357 45542 45359 45537"
## [172] "PMC12916010 zip/Supplementary_Table_5.xlsx Hsapiens 2 45357 45542"
## [173] "PMC12916010 zip/Supplementary_Table_5.xlsx Hsapiens 1 45359"
## [174] "PMC12916010 zip/Supplementary_Table_5.xlsx Hsapiens 1 45545"
## [175] "PMC12916010 zip/Supplementary_Table_5.xlsx Hsapiens 7 45362 45547 45545 45361 45537 45357 45542"
## [176] "PMC12916010 zip/Supplementary_Table_5.xlsx Hsapiens 6 45362 45547 45545 45361 45537 45357"
## [177] "PMC12916010 zip/Supplementary_Table_5.xlsx Hsapiens 1 45542"
## [178] "PMC12916010 zip/Supplementary_Table_5.xlsx Hsapiens 5 45362 45547 45545 45361 45537"
## [179] "PMC12916010 zip/Supplementary_Table_5.xlsx Hsapiens 3 45545 45357 45537"
## [180] "PMC12916010 zip/Supplementary_Table_5.xlsx Hsapiens 1 45542"
## [181] "PMC12916010 zip/Supplementary_Table_5.xlsx Hsapiens 1 45545"
## [182] "PMC12916010 zip/Supplementary_Table_5.xlsx Hsapiens 7 45357 45542 45359 45537 45357 45542 45359"
## [183] "PMC12916010 zip/Supplementary_Table_5.xlsx Hsapiens 4 45357 45542 45359 45537"
## [184] "PMC12916010 zip/Supplementary_Table_5.xlsx Hsapiens 2 45357 45542"
## [185] "PMC12916010 zip/Supplementary_Table_5.xlsx Hsapiens 1 45545"
## [186] "PMC12916010 zip/Supplementary_Table_5.xlsx Hsapiens 1 45359"
## [187] "PMC12916010 zip/Supplementary_Table_1.xlsx Hsapiens 1 54753"
## [188] "PMC12916010 zip/Supplementary_Table_1.xlsx Hsapiens 1 40602"
## [189] "PMC12916010 zip/Supplementary_Table_1.xlsx Hsapiens 6 45362 45362 45362 45362 45362 45362"
## [190] "PMC12916010 zip/Supplementary_Table_1.xlsx Hsapiens 1 45362"
## [191] "PMC12916010 zip/Supplementary_Table_2.xlsx Hsapiens 24 45353 45354 45543 45537 45352 45353 45359 45360 45538 45540 45542 45546 45352 45545 45356 45541 45547 45549 45536 45355 45357 45362 45544 45361"
## [192] "PMC12916010 zip/Supplementary_Table_9.xlsx Hsapiens 11 45717 45718 45726 45727 45719 45720 45721 45722 45723 45724 45725"
## [193] "PMC12916010 zip/Supplementary_Table_7.xlsx Ggallus 7 45358 45357 45358 45362 45357 45361 45361"
## [194] "PMC12916010 zip/Supplementary_Table_7.xlsx Ggallus 7 45358 45357 45358 45362 45357 45361 45361"
## [195] "PMC12916010 zip/Supplementary_Table_7.xlsx Ggallus 6 45358 45357 45358 45362 45357 45361"
## [196] "PMC12916010 zip/Supplementary_Table_7.xlsx Ggallus 3 45358 45357 45361"
## [197] "PMC12916010 zip/Supplementary_Table_7.xlsx Ggallus 2 45358 45357"
## [198] "PMC12916010 zip/Supplementary_Table_7.xlsx Ggallus 4 45358 45362 45357 45361"
## [199] "PMC12916010 zip/Supplementary_Table_7.xlsx Ggallus 3 45357 45358 45362"
## [200] "PMC12916010 zip/Supplementary_Table_7.xlsx Ggallus 2 45358 45357"
## [201] "PMC12916010 zip/Supplementary_Table_7.xlsx Ggallus 2 45357 45361"
## [202] "PMC12916010 zip/Supplementary_Table_7.xlsx Ggallus 2 45357 45358"
## [203] "PMC12916010 zip/Supplementary_Table_7.xlsx Hsapiens 4 45537 45357 45545 45361"
## [204] "PMC12916010 zip/Supplementary_Table_7.xlsx Hsapiens 4 45537 45357 45545 45361"
## [205] "PMC12916010 zip/Supplementary_Table_7.xlsx Hsapiens 1 45537"
## [206] "PMC12916010 zip/Supplementary_Table_7.xlsx Hsapiens 3 45357 45545 45361"
## [207] "PMC12916010 zip/Supplementary_Table_7.xlsx Hsapiens 1 45357"
## [208] "PMC12916010 zip/Supplementary_Table_7.xlsx Hsapiens 1 45537"
## [209] "PMC12916010 zip/Supplementary_Table_7.xlsx Hsapiens 2 45357 45545"
## [210] "PMC12916010 zip/Supplementary_Table_7.xlsx Hsapiens 3 45357 45545 45361"
## [211] "PMC12916010 zip/Supplementary_Table_7.xlsx Hsapiens 2 45357 45545"
## [212] "PMC12916010 zip/Supplementary_Table_7.xlsx Hsapiens 1 45357"
## [213] "PMC12916010 zip/Supplementary_Table_7.xlsx Ggallus 2 45358 45357"
## [214] "PMC12916010 zip/Supplementary_Table_7.xlsx Ggallus 4 45358 45362 45357 45361"
## [215] "PMC12916010 zip/Supplementary_Table_7.xlsx Ggallus 3 45357 45358 45362"
## [216] "PMC12916010 zip/Supplementary_Table_7.xlsx Hsapiens 1 45537"
## [217] "PMC12916010 zip/Supplementary_Table_7.xlsx Ggallus 2 45358 45357"
## [218] "PMC12916010 zip/Supplementary_Table_7.xlsx Hsapiens 2 45357 45545"
## [219] "PMC12916010 zip/Supplementary_Table_7.xlsx Hsapiens 1 45357"
## [220] "PMC12916010 zip/Supplementary_Table_7.xlsx Ggallus 2 45357 45361"
## [221] "PMC12916010 zip/Supplementary_Table_7.xlsx Hsapiens 3 45357 45545 45361"
## [222] "PMC12916010 zip/Supplementary_Table_7.xlsx Ggallus 2 45357 45358"
## [223] "PMC12916010 zip/Supplementary_Table_7.xlsx Hsapiens 2 45357 45545"
## [224] "PMC12916010 zip/Supplementary_Table_7.xlsx Ggallus 1 45357"
## [225] "PMC12916010 zip/Supplementary_Table_7.xlsx Hsapiens 1 45357"
## [226] "PMC12916010 zip/Supplementary_Table_7.xlsx Hsapiens 1 45357"
## [227] "PMC12916010 zip/Supplementary_Table_8.xlsx Hsapiens 1 45359"
## [228] "PMC12916010 zip/Supplementary_Table_8.xlsx Hsapiens 1 45357"
## [229] "PMC12916010 zip/Supplementary_Table_3.xlsx Hsapiens 16 45353 45352 45353 45359 45361 45357 45362 45356 45357 45362 45357 45358 45362 45361 45357 45362"
## [230] "PMC12916010 zip/Supplementary_Table_3.xlsx Hsapiens 4 45353 45352 45357 45359"
## [231] "PMC12916010 zip/Supplementary_Table_3.xlsx Hsapiens 18 45359 45357 45353 45357 45361 45358 45359 45362 45361 45357 45362 45361 45361 45357 45362 45356 45354 45358"
## [232] "PMC12916010 zip/Supplementary_Table_3.xlsx Hsapiens 9 45362 45357 45361 45361 45357 45362 45356 45354 45358"
## [233] "PMC12915790 zip/Supplementary_Tables.xlsx Hsapiens 2 17807 38928"
## [234] "PMC12915790 zip/Supplementary_Tables.xlsx Drerio 2 45902 45910"
## [235] "PMC12915790 zip/Supplementary_Tables.xlsx Drerio 5 45906 45718 45721 45915 45724"
## [236] "PMC12915790 zip/Supplementary_Tables.xlsx Drerio 3 45718 45902 45722"
## [237] "PMC12915790 zip/Supplementary_Tables.xlsx Drerio 6 45718 45721 45902 45915 45724 45722"
## [238] "PMC12915790 zip/Supplementary_Tables.xlsx Drerio 2 45902 45910"
## [239] "PMC12914052 PMC_DL/PMC12914052/supplementaryfiles/41467_2026_68465_MOESM6_ESM.xlsx Mmusculus 9 44450 44260 44445 44262 44441 44261 44440 44446 44257"
## [240] "PMC12914052 PMC_DL/PMC12914052/supplementaryfiles/41467_2026_68465_MOESM6_ESM.xlsx Mmusculus 9 44440 44445 44446 44448 44257 44261 44450 44262 44257"
## [241] "PMC12914052 PMC_DL/PMC12914052/supplementaryfiles/41467_2026_68465_MOESM6_ESM.xlsx Mmusculus 3 44440 44450 44446"
## [242] "PMC12914052 PMC_DL/PMC12914052/supplementaryfiles/41467_2026_68465_MOESM8_ESM.xlsx Mmusculus 27 45544 45546 45538 45545 45357 45362 45542 45359 45536 45537 45360 45354 45353 45353 45356 45358 45541 45543 45352 45352 45355 45361 45537 45539 45540 45547 45549"
## [243] "PMC12914052 PMC_DL/PMC12914052/supplementaryfiles/41467_2026_68465_MOESM8_ESM.xlsx Mmusculus 27 45357 45359 45543 45352 45353 45353 45354 45356 45358 45360 45362 45536 45537 45538 45539 45540 45541 45542 45544 45545 45546 45352 45355 45361 45537 45547 45549"
## [244] "PMC12914052 PMC_DL/PMC12914052/supplementaryfiles/41467_2026_68465_MOESM8_ESM.xlsx Mmusculus 27 45352 45353 45353 45354 45356 45357 45358 45359 45360 45362 45536 45537 45538 45539 45540 45541 45542 45543 45544 45545 45546 45352 45355 45361 45537 45547 45549"
## [245] "PMC12914052 PMC_DL/PMC12914052/supplementaryfiles/41467_2026_68465_MOESM8_ESM.xlsx Mmusculus 27 45362 45542 45546 45358 45353 45538 45543 45360 45357 45544 45354 45545 45541 45536 45537 45359 45353 45356 45352 45352 45355 45361 45537 45539 45540 45547 45549"
## [246] "PMC12914052 PMC_DL/PMC12914052/supplementaryfiles/41467_2026_68465_MOESM5_ESM.xlsx Mmusculus 10 44262 44450 44260 44446 44261 44440 44441 44257 44448 44445"
## [247] "PMC12914052 PMC_DL/PMC12914052/supplementaryfiles/41467_2026_68465_MOESM5_ESM.xlsx Mmusculus 8 44445 44446 44448 44262 44261 44257 44450 44260"
## [248] "PMC12914052 PMC_DL/PMC12914052/supplementaryfiles/41467_2026_68465_MOESM5_ESM.xlsx Mmusculus 4 44440 44257 44450 44446"
## [249] "PMC12914052 PMC_DL/PMC12914052/supplementaryfiles/41467_2026_68465_MOESM3_ESM.xlsx Hsapiens 27 45362 45359 45358 45357 45540 45353 45536 45352 45547 45539 45361 45360 45541 45544 45545 45546 45355 45543 45356 45550 45353 45549 45352 45538 45542 45537 45354"
## [250] "PMC12914052 PMC_DL/PMC12914052/supplementaryfiles/41467_2026_68465_MOESM3_ESM.xlsx Hsapiens 26 45362 45359 45540 45357 45353 45536 45539 45545 45355 45361 45547 45352 45352 45550 45542 45360 45354 45541 45543 45358 45538 45544 45537 45546 45353 45549"
## [251] "PMC12914052 PMC_DL/PMC12914052/supplementaryfiles/41467_2026_68465_MOESM3_ESM.xlsx Hsapiens 27 45362 45545 45359 45357 45540 45353 45547 45361 45539 45355 45541 45537 45358 45360 45546 45352 45544 45356 45549 45352 45353 45550 45538 45354 45543 45542 45536"
## [252] "PMC12914052 PMC_DL/PMC12914052/supplementaryfiles/41467_2026_68465_MOESM3_ESM.xlsx Hsapiens 27 45362 45359 45545 45357 45546 45353 45358 45539 45540 45547 45361 45536 45544 45352 45355 45360 45541 45543 45550 45356 45538 45542 45537 45353 45549 45352 45354"
## [253] "PMC12914052 PMC_DL/PMC12914052/supplementaryfiles/41467_2026_68465_MOESM3_ESM.xlsx Hsapiens 27 45362 45359 45357 45545 45353 45352 45540 45355 45547 45539 45550 45536 45549 45543 45541 45358 45360 45353 45361 45546 45356 45538 45544 45542 45537 45352 45354"
## [254] "PMC12914052 PMC_DL/PMC12914052/supplementaryfiles/41467_2026_68465_MOESM10_ESM.xlsx Mmusculus 21 45911 45718 45907 45909 45906 45901 45902 45904 45727 45910 45718 45724 45722 45908 45725 45721 45723 45717 45905 45719 45903"
## [255] "PMC12914052 PMC_DL/PMC12914052/supplementaryfiles/41467_2026_68465_MOESM10_ESM.xlsx Mmusculus 21 45906 45717 45718 45723 45724 45901 45727 45911 45905 45909 45719 45725 45910 45908 45904 45902 45721 45907 45903 45722 45718"
## [256] "PMC12914052 PMC_DL/PMC12914052/supplementaryfiles/41467_2026_68465_MOESM7_ESM.xlsx Mmusculus 27 45538 45360 45539 45545 45537 45352 45354 45352 45361 45540 45536 45358 45544 45353 45546 45542 45541 45355 45353 45356 45357 45359 45543 45362 45537 45547 45549"
## [257] "PMC12914052 PMC_DL/PMC12914052/supplementaryfiles/41467_2026_68465_MOESM7_ESM.xlsx Mmusculus 27 45539 45538 45352 45354 45545 45537 45352 45353 45353 45355 45356 45357 45358 45359 45360 45361 45362 45536 45537 45540 45541 45542 45543 45544 45546 45547 45549"
## [258] "PMC12909304 PMC_DL/PMC12909304/supplementaryfiles/43856_2026_1385_MOESM5_ESM.xlsx Hsapiens 6 45903 45904 45718 45717 45909 45910"
## [259] "PMC12909304 PMC_DL/PMC12909304/supplementaryfiles/43856_2026_1385_MOESM5_ESM.xlsx Hsapiens 6 45903 45904 45718 45717 45909 45910"
## [260] "PMC12911300 PMC_DL/PMC12911300/supplementaryfiles/12967_2026_7726_MOESM3_ESM.xlsx Hsapiens 1 37469"
## [261] "PMC12910984 PMC_DL/PMC12910984/supplementaryfiles/13048_2026_1970_MOESM3_ESM.xlsx Hsapiens 12 45720 45720 45723 45722 45914 45724 45902 45726 45721 45907 45914 45726"
## [262] "PMC12909639 PMC_DL/PMC12909639/supplementaryfiles/12672_2026_4446_MOESM2_ESM.xlsx Hsapiens 12 45903 45904 45718 45725 45717 45908 45719 45901 45915 45909 45905 45717"
## [263] "PMC12909843 PMC_DL/PMC12909843/supplementaryfiles/41467_2026_68388_MOESM4_ESM.xlsx Hsapiens 14 45718 45717 45723 45720 45717 45722 45727 45719 45992 45724 45721 45725 45726 45718"
## [264] "PMC12909843 PMC_DL/PMC12909843/supplementaryfiles/41467_2026_68388_MOESM4_ESM.xlsx Hsapiens 1 45724"
## [265] "PMC12909843 PMC_DL/PMC12909843/supplementaryfiles/41467_2026_68388_MOESM4_ESM.xlsx Hsapiens 1 45724"
## [266] "PMC12909843 PMC_DL/PMC12909843/supplementaryfiles/41467_2026_68388_MOESM4_ESM.xlsx Hsapiens 14 45718 45717 45723 45720 45717 45722 45727 45719 45992 45724 45721 45725 45726 45718"
## [267] "PMC12909843 PMC_DL/PMC12909843/supplementaryfiles/41467_2026_68388_MOESM4_ESM.xlsx Hsapiens 6 45720 45718 45717 45722 45721 45725"
## [268] "PMC12909843 PMC_DL/PMC12909843/supplementaryfiles/41467_2026_68388_MOESM4_ESM.xlsx Hsapiens 14 45718 45717 45723 45720 45717 45722 45727 45719 45992 45724 45721 45725 45726 45718"
## [269] "PMC12909843 PMC_DL/PMC12909843/supplementaryfiles/41467_2026_68388_MOESM4_ESM.xlsx Hsapiens 11 45718 45717 45723 45720 45717 45722 45719 45724 45721 45725 45718"
## [270] "PMC12909843 PMC_DL/PMC12909843/supplementaryfiles/41467_2026_68388_MOESM4_ESM.xlsx Hsapiens 12 45718 45717 45723 45720 45717 45722 45727 45719 45724 45721 45725 45718"
## [271] "PMC12909843 PMC_DL/PMC12909843/supplementaryfiles/41467_2026_68388_MOESM4_ESM.xlsx Hsapiens 13 45718 45717 45723 45720 45717 45722 45727 45719 45992 45724 45721 45725 45718"
## [272] "PMC12908926 zip/Table_S2_R1.xlsx Ggallus 8 43528 43525 43525 36951 36951 43722 43532 43717"
## [273] "PMC12908806 PMC_DL/PMC12908806/supplementaryfiles/medi-105-e47629-s001.xlsx Hsapiens 3 45718 45719 45721"
## [274] "PMC12908806 PMC_DL/PMC12908806/supplementaryfiles/medi-105-e47629-s001.xlsx Hsapiens 2 45721 45718"
## [275] "PMC12908361 PMC_DL/PMC12908361/supplementaryfiles/12864_2026_12554_MOESM1_ESM.xlsx Hsapiens 7 39326 38412 38961 38777 38231 39326 37316"
## [276] "PMC12904788 PMC_DL/PMC12904788/supplementaryfiles/41556_2025_1859_MOESM3_ESM.xlsx Mmusculus 1 38412"
## [277] "PMC12904788 PMC_DL/PMC12904788/supplementaryfiles/41556_2025_1859_MOESM3_ESM.xlsx Mmusculus 1 38412"
## [278] "PMC12904788 PMC_DL/PMC12904788/supplementaryfiles/41556_2025_1859_MOESM3_ESM.xlsx Hsapiens 28 39142 38596 38961 37681 37865 37316 40603 36951 40238 39508 37500 38047 39692 37226 41883 39873 40787 38231 41153 42248 38777 40422 36951 39326 37316 40057 38412 37135"
## [279] "PMC12904788 PMC_DL/PMC12904788/supplementaryfiles/41556_2025_1859_MOESM3_ESM.xlsx Hsapiens 28 40603 37135 36951 38777 37316 39326 38412 39692 39142 36951 42248 37226 39873 40422 37316 37500 40238 41883 37681 38231 38961 37865 38047 38596 41153 40057 40787 39508"
## [280] "PMC12904206 zip/sciadv.aeb5665_tables_s1_to_s37.xlsx Hsapiens 28 45915 45718 45717 45910 45723 45720 45902 45911 45717 45722 45727 45719 45908 45907 45914 45992 45724 45721 45725 45912 45901 45901 45904 45726 45909 45718 45905 45903"
## [281] "PMC12904206 zip/sciadv.aeb5665_tables_s1_to_s37.xlsx Hsapiens 3 45721 45725 45718"
## [282] "PMC12901234 PMC_DL/PMC12901234/supplementaryfiles/41467_2025_68280_MOESM3_ESM.xlsx Mmusculus 26 44986 44987 44986 44996 44987 44988 44989 44990 44991 44992 44993 44994 45184 45170 45179 45180 45181 45183 45171 45172 45173 45174 45175 45176 45177 45178"
## [283] "PMC12898238 zip/NF1_Suppl_tables.xlsx Hsapiens 5 35372 57194 49167 16823 45517"
## [284] "PMC12899871 zip/Table_S5.xlsx Athaliana 1 45937"
## [285] "PMC12899871 zip/Table_S7.xlsx Athaliana 1 45937"
## [286] "PMC12896660 zip/Table_S1.xlsx Hsapiens 5 37104 37469 37834 38200 36892"
## [287] "PMC12895973 PMC_DL/PMC12895973/supplementaryfiles/12933_2025_3041_MOESM3_ESM.xlsx Hsapiens 1 45353"
## [288] "PMC12895973 PMC_DL/PMC12895973/supplementaryfiles/12933_2025_3041_MOESM3_ESM.xlsx Hsapiens 1 45353"
## [289] "PMC12895973 PMC_DL/PMC12895973/supplementaryfiles/12933_2025_3041_MOESM3_ESM.xlsx Hsapiens 1 45353"
## [290] "PMC12900434 PMC_DL/PMC12900434/supplementaryfiles/pbio.3003647.s005.xlsx Hsapiens 2 44259 44264"
## [291] "PMC12900434 PMC_DL/PMC12900434/supplementaryfiles/pbio.3003647.s009.xlsx Hsapiens 2 44259 44264"
## [292] "PMC12900434 PMC_DL/PMC12900434/supplementaryfiles/pbio.3003647.s009.xlsx Hsapiens 2 45358 45358"
## [293] "PMC12900434 PMC_DL/PMC12900434/supplementaryfiles/pbio.3003647.s009.xlsx Hsapiens 2 45358 45358"
## [294] "PMC12900434 PMC_DL/PMC12900434/supplementaryfiles/pbio.3003647.s008.xlsx Hsapiens 2 45358 45358"
## [295] "PMC12900434 PMC_DL/PMC12900434/supplementaryfiles/pbio.3003647.s008.xlsx Hsapiens 2 45358 45358"
## [296] "PMC12895049 PMC_DL/PMC12895049/supplementaryfiles/41419_2026_8435_MOESM5_ESM.xlsx Hsapiens 2 45717 45718"
## [297] "PMC12895049 PMC_DL/PMC12895049/supplementaryfiles/41419_2026_8435_MOESM3_ESM.xlsx Hsapiens 2 45718 45717"
## [298] "PMC12895049 PMC_DL/PMC12895049/supplementaryfiles/41419_2026_8435_MOESM6_ESM.xlsx Hsapiens 2 45718 45717"
## [299] "PMC12895049 PMC_DL/PMC12895049/supplementaryfiles/41419_2026_8435_MOESM4_ESM.xlsx Hsapiens 2 45717 45718"
## [300] "PMC12895643 PMC_DL/PMC12895643/supplementaryfiles/12888_2026_7816_MOESM3_ESM.xlsx Hsapiens 1 45546"
## [301] "PMC12895643 PMC_DL/PMC12895643/supplementaryfiles/12888_2026_7816_MOESM3_ESM.xlsx Hsapiens 1 45546"
## [302] "PMC12895643 PMC_DL/PMC12895643/supplementaryfiles/12888_2026_7816_MOESM3_ESM.xlsx Hsapiens 1 45356"
## [303] "PMC12891661 PMC_DL/PMC12891661/supplementaryfiles/43856_2025_1363_MOESM3_ESM.xlsx Hsapiens 2 45910 45903"
## [304] "PMC12886973 PMC_DL/PMC12886973/supplementaryfiles/41467_2025_68192_MOESM4_ESM.xlsx Hsapiens 5 44993 44995 44991 44987 44986"
## [305] "PMC12888919 PMC_DL/PMC12888919/supplementaryfiles/pwaf074_supplementary_tables_s2.xlsx Mmusculus 38 45358 45358 45353 45358 45356 45358 45358 45352 45352 45354 45355 45357 45362 45359 45352 45352 45359 45357 45352 45357 45356 45353 45358 45353 45358 45358 45356 45358 45358 45353 45362 45358 45358 45358 45362 45358 45353 45358"
## [306] "PMC12888919 PMC_DL/PMC12888919/supplementaryfiles/pwaf074_supplementary_tables_s3.xlsx Mmusculus 27 45356 45358 45358 45356 45359 45356 45358 45356 45356 45352 45356 45356 45356 45356 45356 45356 45353 45358 45356 45356 45356 45356 45356 45356 45356 45356 45358"
## [307] "PMC12883303 PMC_DL/PMC12883303/supplementaryfiles/TRC2-12-e70209-s003.xlsx Hsapiens 2 36588 64445"
## [308] "PMC12884834 PMC_DL/PMC12884834/supplementaryfiles/Table1.xlsx Hsapiens 1 44448"
## [309] "PMC12884627 PMC_DL/PMC12884627/supplementaryfiles/13072_2026_661_MOESM14_ESM.xlsx Hsapiens 27 45912 45908 45718 45724 45992 45725 45902 45717 45722 45717 45914 45911 45720 45727 45905 45910 45909 45719 45723 45903 45718 45904 45907 45726 45901 45906 45721"
## [310] "PMC12881479 PMC_DL/PMC12881479/supplementaryfiles/41467_2025_68146_MOESM3_ESM.xlsx Hsapiens 1 45992"
## [311] "PMC12881479 PMC_DL/PMC12881479/supplementaryfiles/41467_2025_68146_MOESM3_ESM.xlsx Hsapiens 1 45992"
## [312] "PMC12881479 PMC_DL/PMC12881479/supplementaryfiles/41467_2025_68146_MOESM3_ESM.xlsx Mmusculus 2 45901 45909"
## [313] "PMC12881479 PMC_DL/PMC12881479/supplementaryfiles/41467_2025_68146_MOESM3_ESM.xlsx Mmusculus 2 45901 45909"
## [314] "PMC12881479 PMC_DL/PMC12881479/supplementaryfiles/41467_2025_68146_MOESM3_ESM.xlsx Hsapiens 11 45717 45718 45723 45725 45722 45719 45721 45724 45992 45727 45726"
## [315] "PMC12881479 PMC_DL/PMC12881479/supplementaryfiles/41467_2025_68146_MOESM3_ESM.xlsx Hsapiens 11 45992 45717 45718 45723 45725 45722 45719 45721 45724 45727 45726"
## [316] "PMC12881479 PMC_DL/PMC12881479/supplementaryfiles/41467_2025_68146_MOESM3_ESM.xlsx Hsapiens 11 45992 45717 45718 45723 45725 45722 45719 45721 45724 45727 45726"
## [317] "PMC12881479 PMC_DL/PMC12881479/supplementaryfiles/41467_2025_68146_MOESM3_ESM.xlsx Mmusculus 5 45911 45907 45908 45721 45718"
## [318] "PMC12881479 PMC_DL/PMC12881479/supplementaryfiles/41467_2025_68146_MOESM3_ESM.xlsx Mmusculus 5 45911 45907 45908 45721 45718"
## [319] "PMC12881478 PMC_DL/PMC12881478/supplementaryfiles/42003_2025_9469_MOESM4_ESM.xlsx Hsapiens 1 37316"
## [320] "PMC12879437 PMC_DL/PMC12879437/supplementaryfiles/40104_2025_1334_MOESM1_ESM.xlsx Hsapiens 26 45720 45723 45902 45907 45725 45903 45717 45911 45719 45908 45718 45910 45718 45717 45904 45726 45909 45727 45722 45912 45901 45914 45721 45724 45906 45905"
## [321] "PMC12879437 PMC_DL/PMC12879437/supplementaryfiles/40104_2025_1334_MOESM1_ESM.xlsx Hsapiens 26 45720 45723 45902 45907 45725 45903 45717 45911 45719 45908 45718 45910 45718 45717 45904 45726 45909 45727 45722 45912 45901 45914 45721 45724 45906 45905"
## [322] "PMC12879437 PMC_DL/PMC12879437/supplementaryfiles/40104_2025_1334_MOESM1_ESM.xlsx Hsapiens 21 45718 45717 45717 45724 45723 45904 45718 45907 45911 45908 45721 45719 45910 45906 45722 45901 45725 45905 45902 45909 45903"
## [323] "PMC12879437 PMC_DL/PMC12879437/supplementaryfiles/40104_2025_1334_MOESM1_ESM.xlsx Hsapiens 21 45723 45722 45718 45905 45906 45719 45903 45910 45907 45721 45717 45718 45909 45724 45908 45725 45717 45911 45901 45902 45904"
## [324] "PMC12879437 PMC_DL/PMC12879437/supplementaryfiles/40104_2025_1334_MOESM1_ESM.xlsx Hsapiens 21 45718 45723 45722 45717 45905 45910 45906 45907 45719 45904 45718 45903 45901 45908 45902 45725 45911 45717 45724 45721 45909"
## [325] "PMC12877124 PMC_DL/PMC12877124/supplementaryfiles/41467_2025_67959_MOESM3_ESM.xlsx Hsapiens 25 44993 45173 45175 45174 45178 44994 45177 44987 44990 45181 45172 45176 45170 45171 44989 44986 44991 45179 45180 44987 44988 44992 44986 44995 44996"
## [326] "PMC12877124 PMC_DL/PMC12877124/supplementaryfiles/41467_2025_67959_MOESM3_ESM.xlsx Hsapiens 25 45181 45173 45176 45180 44994 45179 44987 44990 45175 44991 44989 45178 44993 44986 44996 44992 45170 45172 44987 44995 44986 45177 45174 45171 44988"
## [327] "PMC12877124 PMC_DL/PMC12877124/supplementaryfiles/41467_2025_67959_MOESM3_ESM.xlsx Hsapiens 25 44990 45179 45174 45175 44992 44994 44989 44986 44986 45180 44988 45172 45181 45178 44987 45170 45171 44991 45173 44995 44993 45176 44987 44996 45177"
## [328] "PMC12877124 PMC_DL/PMC12877124/supplementaryfiles/41467_2025_67959_MOESM3_ESM.xlsx Hsapiens 25 44990 45175 44992 45174 44986 44987 44994 44989 45181 45176 44988 44995 44986 45170 45179 45178 44991 45171 45177 44987 45173 44993 45172 44996 45180"
## [329] "PMC12877124 PMC_DL/PMC12877124/supplementaryfiles/41467_2025_67959_MOESM3_ESM.xlsx Hsapiens 25 44987 45172 45173 44987 45176 45175 44992 45180 44994 45181 44989 44986 44991 45177 44993 45171 44995 44988 45170 44996 45178 45174 44986 45179 44990"
## [330] "PMC12877124 PMC_DL/PMC12877124/supplementaryfiles/41467_2025_67959_MOESM3_ESM.xlsx Hsapiens 25 44987 45172 45173 44987 45176 45175 44992 45180 44994 45181 44989 44986 44991 45177 44993 45171 44995 44988 45170 44996 45178 45174 44986 45179 44990"
## [331] "PMC12877124 PMC_DL/PMC12877124/supplementaryfiles/41467_2025_67959_MOESM3_ESM.xlsx Hsapiens 25 44987 45172 45173 44987 45176 45175 44992 45180 44994 45181 44989 44986 44991 45177 44993 45171 44995 44988 45170 44996 45178 45174 44986 45179 44990"
## [332] "PMC12877124 PMC_DL/PMC12877124/supplementaryfiles/41467_2025_67959_MOESM3_ESM.xlsx Hsapiens 25 45179 44990 45174 45181 45180 45175 44992 45172 44986 45171 44994 44989 45178 44988 45176 44986 44991 45173 45170 44993 44987 45177 44987 44996 44995"
## [333] "PMC12877124 PMC_DL/PMC12877124/supplementaryfiles/41467_2025_67959_MOESM3_ESM.xlsx Hsapiens 25 45181 44990 45172 45171 44995 45170 45175 44994 45177 45179 44987 44996 44993 45173 44987 45176 44991 44988 45178 45174 44986 44986 44992 44989 45180"
## [334] "PMC12877124 PMC_DL/PMC12877124/supplementaryfiles/41467_2025_67959_MOESM3_ESM.xlsx Hsapiens 25 44987 44994 45174 45178 45171 44993 44990 44992 45172 44986 44986 45173 45177 45170 45175 44995 45176 44987 44991 45179 44988 45180 44989 45181 44996"
## [335] "PMC12877124 PMC_DL/PMC12877124/supplementaryfiles/41467_2025_67959_MOESM3_ESM.xlsx Hsapiens 25 44990 45175 44994 45174 45179 45181 45178 44989 45172 44988 45180 45177 44993 44987 45173 44986 45171 45170 44995 45176 44992 44986 44996 44991 44987"
## [336] "PMC12877124 PMC_DL/PMC12877124/supplementaryfiles/41467_2025_67959_MOESM3_ESM.xlsx Hsapiens 25 45175 44990 45181 45178 45174 44993 44994 44987 45177 45170 45172 44987 45173 44989 45179 45171 45176 44996 45180 44986 44991 44986 44988 44992 44995"
## [337] "PMC12877124 PMC_DL/PMC12877124/supplementaryfiles/41467_2025_67959_MOESM3_ESM.xlsx Hsapiens 25 45181 44990 45179 44994 45174 45175 45178 44989 45172 44988 45180 44986 45177 45176 45173 44987 44995 45171 44992 44993 44996 44986 45170 44987 44991"
## [338] "PMC12877124 PMC_DL/PMC12877124/supplementaryfiles/41467_2025_67959_MOESM3_ESM.xlsx Hsapiens 25 45173 44989 44992 45171 45175 44986 45178 44987 44986 44994 45180 44991 45176 44996 45181 45170 45172 44988 44987 44990 45179 44993 45174 45177 44995"
## [339] "PMC12877124 PMC_DL/PMC12877124/supplementaryfiles/41467_2025_67959_MOESM3_ESM.xlsx Hsapiens 25 45175 44994 44990 45174 45181 45178 45172 45179 45173 44989 44993 44988 44987 45177 45171 45180 45170 44986 44996 44986 44992 44991 44987 44995 45176"
## [340] "PMC12877124 PMC_DL/PMC12877124/supplementaryfiles/41467_2025_67959_MOESM3_ESM.xlsx Hsapiens 25 45175 45178 44994 45173 45174 44993 45181 44987 45176 44987 45172 45170 45177 44990 44989 44988 44986 44996 45180 45171 44995 44991 44992 44986 45179"
## [341] "PMC12877124 PMC_DL/PMC12877124/supplementaryfiles/41467_2025_67959_MOESM3_ESM.xlsx Hsapiens 25 45181 44990 44994 45175 45174 45179 45178 45172 44989 45173 44988 44987 44993 45177 45171 45180 45170 44986 44992 44986 44991 44996 45176 44995 44987"
## [342] "PMC12877124 PMC_DL/PMC12877124/supplementaryfiles/41467_2025_67959_MOESM3_ESM.xlsx Hsapiens 25 44994 45175 45173 45178 45172 45174 44990 45181 44993 44987 44989 45179 45176 44988 45177 45171 45170 44991 44996 44995 44987 44986 44986 44992 45180"
## [343] "PMC12877124 PMC_DL/PMC12877124/supplementaryfiles/41467_2025_67959_MOESM3_ESM.xlsx Hsapiens 25 45173 45175 44994 44987 45178 44990 44993 45174 45170 45181 44989 45177 45179 45176 44988 45172 44992 45171 44996 44991 44986 45180 44986 44987 44995"
## [344] "PMC12877124 PMC_DL/PMC12877124/supplementaryfiles/41467_2025_67959_MOESM3_ESM.xlsx Hsapiens 25 45181 44994 45175 45172 45173 45178 45174 44990 44987 45171 44989 45179 44993 45176 44988 45177 44991 44986 44995 44987 44986 45170 44996 44992 45180"
## [345] "PMC12877124 PMC_DL/PMC12877124/supplementaryfiles/41467_2025_67959_MOESM3_ESM.xlsx Hsapiens 25 44990 45179 45174 45175 44989 44994 44988 45172 45180 44986 45178 45181 44992 44995 44996 45177 44993 44991 45176 45171 45173 44986 45170 44987 44987"
## [346] "PMC12877124 PMC_DL/PMC12877124/supplementaryfiles/41467_2025_67959_MOESM3_ESM.xlsx Hsapiens 25 44993 44990 45175 45171 44994 45177 45170 45174 45178 44991 45172 44996 44988 44989 45176 44987 44986 45181 44987 44992 45173 45179 45180 44995 44986"
## [347] "PMC12877124 PMC_DL/PMC12877124/supplementaryfiles/41467_2025_67959_MOESM3_ESM.xlsx Hsapiens 25 45179 44990 45174 44989 45175 45180 44994 44986 44996 45181 44988 45172 44995 45176 44992 45178 44987 44986 45173 44991 44993 45177 44987 45171 45170"
## [348] "PMC12877124 PMC_DL/PMC12877124/supplementaryfiles/41467_2025_67959_MOESM3_ESM.xlsx Hsapiens 25 45178 45181 45175 44994 45174 44990 45179 45172 44989 44987 45173 45177 44993 44988 45170 45180 45171 44991 44987 45176 44986 44986 44996 44995 44992"
## [349] "PMC12877124 PMC_DL/PMC12877124/supplementaryfiles/41467_2025_67959_MOESM3_ESM.xlsx Hsapiens 25 44990 44992 44986 45179 44988 44986 45174 44991 44995 44989 44994 45175 44987 45172 44987 45180 45171 45176 45170 45177 45178 44993 45181 44996 45173"
## [350] "PMC12877124 PMC_DL/PMC12877124/supplementaryfiles/41467_2025_67959_MOESM3_ESM.xlsx Hsapiens 25 44990 45175 45178 45176 45174 44987 45181 44989 45179 44993 44994 45173 45180 44992 45177 45171 44996 45170 44995 44988 44986 44986 44987 44991 45172"
## [351] "PMC12877124 PMC_DL/PMC12877124/supplementaryfiles/41467_2025_67959_MOESM3_ESM.xlsx Hsapiens 25 45181 44994 45179 45178 45175 45172 45174 44987 44989 44990 45176 45180 45177 45173 44988 44993 45170 44991 45171 44992 44986 44986 44995 44996 44987"
## [352] "PMC12877124 PMC_DL/PMC12877124/supplementaryfiles/41467_2025_67959_MOESM3_ESM.xlsx Hsapiens 25 45175 45178 44994 45181 45174 44990 45172 44989 45179 45171 44987 45177 44988 45176 44995 45173 45170 44993 44986 45180 44986 44992 44996 44991 44987"
## [353] "PMC12877124 PMC_DL/PMC12877124/supplementaryfiles/41467_2025_67959_MOESM3_ESM.xlsx Hsapiens 25 45175 44994 44990 45178 45174 45177 45181 44987 45171 44993 44988 45170 44989 45176 44992 45173 44986 45179 45172 44987 44996 45180 44991 44986 44995"
## [354] "PMC12877124 PMC_DL/PMC12877124/supplementaryfiles/41467_2025_67959_MOESM3_ESM.xlsx Hsapiens 25 45181 45175 45178 45172 45179 44994 45174 44989 44990 44987 45171 44995 45176 45177 44988 45173 44986 44987 45170 44996 45180 44986 44993 44991 44992"
## [355] "PMC12877124 PMC_DL/PMC12877124/supplementaryfiles/41467_2025_67959_MOESM3_ESM.xlsx Hsapiens 25 45179 44989 45180 44986 45181 45174 44995 45171 44992 45175 44990 44988 44993 45170 44987 45176 44986 45178 44994 44987 45173 44996 44991 45172 45177"
## [356] "PMC12877124 PMC_DL/PMC12877124/supplementaryfiles/41467_2025_67959_MOESM3_ESM.xlsx Hsapiens 25 45179 45174 44992 44990 45175 44994 44995 44988 45180 45172 45171 44989 44986 44987 44993 45178 45173 45181 45170 44991 44986 44987 45176 45177 44996"
## [357] "PMC12877124 PMC_DL/PMC12877124/supplementaryfiles/41467_2025_67959_MOESM3_ESM.xlsx Hsapiens 25 45172 44994 45171 45175 45178 44995 44986 44990 44993 45173 44991 44987 44986 45174 45179 45176 45181 45170 44988 44996 45180 44989 45177 44987 44992"
## [358] "PMC12877124 PMC_DL/PMC12877124/supplementaryfiles/41467_2025_67959_MOESM3_ESM.xlsx Hsapiens 25 44990 45174 44994 45172 45175 45179 45178 44988 44993 44989 45173 44991 45170 44992 45177 44986 45180 44987 44995 45176 45171 44996 44987 45181 44986"
## [359] "PMC12877124 PMC_DL/PMC12877124/supplementaryfiles/41467_2025_67959_MOESM3_ESM.xlsx Hsapiens 25 45175 44994 45178 45174 44990 45171 44993 45179 45172 44992 44988 45170 44989 44987 45181 45176 44995 45177 45173 45180 44991 44987 44986 44986 44996"
## [360] "PMC12877124 PMC_DL/PMC12877124/supplementaryfiles/41467_2025_67959_MOESM3_ESM.xlsx Hsapiens 25 44987 44996 45178 44986 44995 44993 44992 45175 44986 45174 44990 45171 45176 44987 45172 44994 45179 44989 45173 44991 44988 45180 45181 45170 45177"
## [361] "PMC12877124 PMC_DL/PMC12877124/supplementaryfiles/41467_2025_67959_MOESM3_ESM.xlsx Hsapiens 25 44990 45174 44994 45172 45179 45175 44988 44993 45173 44991 45178 44989 44986 45180 45170 45177 44995 45176 45181 44992 45171 44987 44987 44996 44986"
## [362] "PMC12877124 PMC_DL/PMC12877124/supplementaryfiles/41467_2025_67959_MOESM3_ESM.xlsx Hsapiens 25 45171 45181 44994 45172 44987 45176 45175 44990 45177 45178 44993 45174 44986 45180 45173 44996 44991 44986 44989 45179 44995 44992 44988 45170 44987"
## [363] "PMC12877124 PMC_DL/PMC12877124/supplementaryfiles/41467_2025_67959_MOESM3_ESM.xlsx Hsapiens 25 44994 45176 45174 44995 45179 45180 44989 45175 45171 45177 45178 45173 44987 44986 44986 44988 44992 44987 44991 45181 44993 44990 45170 44996 45172"
## [364] "PMC12877124 PMC_DL/PMC12877124/supplementaryfiles/41467_2025_67959_MOESM3_ESM.xlsx Hsapiens 25 45174 44990 45175 44989 45179 45178 45181 45180 45172 45170 44986 45171 44988 45176 44994 44987 44992 44996 44991 44995 45177 44987 45173 44986 44993"
## [365] "PMC12877124 PMC_DL/PMC12877124/supplementaryfiles/41467_2025_67959_MOESM3_ESM.xlsx Hsapiens 25 45178 45175 44996 45171 44990 44994 45174 44987 45172 45173 45179 44992 44989 44986 44995 44993 44987 45176 45177 45180 45170 44988 44991 44986 45181"
## [366] "PMC12877124 PMC_DL/PMC12877124/supplementaryfiles/41467_2025_67959_MOESM3_ESM.xlsx Hsapiens 25 45174 44990 44994 45172 45178 44993 45171 45177 45176 45175 44996 45173 44989 45170 44988 44987 44992 44986 45180 44987 44995 44986 45179 44991 45181"
## [367] "PMC12877124 PMC_DL/PMC12877124/supplementaryfiles/41467_2025_67959_MOESM3_ESM.xlsx Hsapiens 25 45181 44990 44986 44995 45179 44988 45172 44987 45174 45177 45175 44994 44996 45173 44986 44989 44992 45176 44991 45171 44987 44993 45178 45180 45170"
## [368] "PMC12877124 PMC_DL/PMC12877124/supplementaryfiles/41467_2025_67959_MOESM3_ESM.xlsx Hsapiens 25 45178 44987 45172 45181 45171 44994 45175 44993 45177 45173 44992 45179 44996 44991 45176 45174 44986 44988 44989 45180 44986 44990 45170 44987 44995"
## [369] "PMC12877124 PMC_DL/PMC12877124/supplementaryfiles/41467_2025_67959_MOESM3_ESM.xlsx Hsapiens 25 45175 45179 44989 44992 45174 44995 44990 45171 44986 45180 44986 44988 45181 45178 44987 44994 44996 44993 45170 45172 45173 45177 44991 45176 44987"
## [370] "PMC12877124 PMC_DL/PMC12877124/supplementaryfiles/41467_2025_67959_MOESM3_ESM.xlsx Hsapiens 25 45181 45173 45175 44994 44990 45178 45179 44987 44989 45180 45176 45174 44993 45177 44996 44992 44991 45171 44986 44987 45172 44995 45170 44986 44988"
## [371] "PMC12877124 PMC_DL/PMC12877124/supplementaryfiles/41467_2025_67959_MOESM6_ESM.xlsx Hsapiens 1 HG-14-10-04"
## [372] "PMC12877124 PMC_DL/PMC12877124/supplementaryfiles/41467_2025_67959_MOESM6_ESM.xlsx Hsapiens 1 HG-14-10-04"
## [373] "PMC12877124 PMC_DL/PMC12877124/supplementaryfiles/41467_2025_67959_MOESM5_ESM.xlsx Hsapiens 47 44993 45174 45181 45174 45174 45174 45174 45174 45174 45181 45181 45174 45174 45181 45174 45174 45174 45174 45174 45174 45174 45174 45174 45174 45181 44993 45174 45181 45181 45174 45174 45181 44993 45174 45174 45174 45174 45174 45174 45174 45174 45174 45174 45174 45174 45174 45174"
## [374] "PMC12877124 PMC_DL/PMC12877124/supplementaryfiles/41467_2025_67959_MOESM4_ESM.xlsx Hsapiens 48 44986 44987 44986 44995 44987 44988 44989 44990 44991 44992 44993 44994 45170 45179 45180 45181 45171 45172 45173 45174 45175 45176 45177 45178 44986 44987 44986 44995 44987 44988 44989 44990 44991 44992 44993 44994 45170 45179 45180 45181 45171 45172 45173 45174 45175 45176 45177 45178"
## [375] "PMC12877124 PMC_DL/PMC12877124/supplementaryfiles/41467_2025_67959_MOESM4_ESM.xlsx Hsapiens 48 44986 44987 44986 44995 44987 44988 44989 44990 44991 44992 44993 44994 45170 45179 45180 45181 45171 45172 45173 45174 45175 45176 45177 45178 44986 44987 44986 44995 44987 44988 44989 44990 44991 44992 44993 44994 45170 45179 45180 45181 45171 45172 45173 45174 45175 45176 45177 45178"
## [376] "PMC12877124 PMC_DL/PMC12877124/supplementaryfiles/41467_2025_67959_MOESM4_ESM.xlsx Hsapiens 48 44986 44987 44986 44995 44987 44988 44989 44990 44991 44992 44993 44994 45170 45179 45180 45181 45171 45172 45173 45174 45175 45176 45177 45178 44986 44987 44986 44995 44987 44988 44989 44990 44991 44992 44993 44994 45170 45179 45180 45181 45171 45172 45173 45174 45175 45176 45177 45178"
## [377] "PMC12877124 PMC_DL/PMC12877124/supplementaryfiles/41467_2025_67959_MOESM4_ESM.xlsx Hsapiens 48 44986 44987 44986 44995 44987 44988 44989 44990 44991 44992 44993 44994 45170 45179 45180 45181 45171 45172 45173 45174 45175 45176 45177 45178 44986 44987 44986 44995 44987 44988 44989 44990 44991 44992 44993 44994 45170 45179 45180 45181 45171 45172 45173 45174 45175 45176 45177 45178"
## [378] "PMC12877124 PMC_DL/PMC12877124/supplementaryfiles/41467_2025_67959_MOESM4_ESM.xlsx Hsapiens 22 46268 46266 46273 46086 46090 46276 46089 46275 46082 46082 46087 46267 46274 46083 46083 46085 46088 46272 46269 46271 46084 46270"
## [379] "PMC12877124 PMC_DL/PMC12877124/supplementaryfiles/41467_2025_67959_MOESM4_ESM.xlsx Hsapiens 288 44986 44987 44986 44995 44987 44988 44989 44990 44991 44992 44993 44994 45170 45179 45180 45181 45171 45172 45173 45174 45175 45176 45177 45178 44986 44987 44986 44995 44987 44988 44989 44990 44991 44992 44993 44994 45170 45179 45180 45181 45171 45172 45173 45174 45175 45176 45177 45178 44986 44987 44986 44995 44987 44988 44989 44990 44991 44992 44993 44994 45170 45179 45180 45181 45171 45172 45173 45174 45175 45176 45177 45178 44986 44987 44986 44995 44987 44988 44989 44990 44991 44992 44993 44994 45170 45179 45180 45181 45171 45172 45173 45174 45175 45176 45177 45178 44986 44987 44986 44995 44987 44988 44989 44990 44991 44992 44993 44994 45170 45179 45180 45181 45171 45172 45173 45174 45175 45176 45177 45178 44986 44987 44986 44995 44987 44988 44989 44990 44991 44992 44993 44994 45170 45179 45180 45181 45171 45172 45173 45174 45175 45176 45177 45178 44986 44987 44986 44995 44987 44988 44989 44990 44991 44992 44993 44994 45170 45179 45180 45181 45171 45172 45173 45174 45175 45176 45177 45178 44986 44987 44986 44995 44987 44988 44989 44990 44991 44992 44993 44994 45170 45179 45180 45181 45171 45172 45173 45174 45175 45176 45177 45178 44986 44987 44986 44995 44987 44988 44989 44990 44991 44992 44993 44994 45170 45179 45180 45181 45171 45172 45173 45174 45175 45176 45177 45178 44986 44987 44986 44995 44987 44988 44989 44990 44991 44992 44993 44994 45170 45179 45180 45181 45171 45172 45173 45174 45175 45176 45177 45178 44986 44987 44986 44995 44987 44988 44989 44990 44991 44992 44993 44994 45170 45179 45180 45181 45171 45172 45173 45174 45175 45176 45177 45178 44986 44987 44986 44995 44987 44988 44989 44990 44991 44992 44993 44994 45170 45179 45180 45181 45171 45172 45173 45174 45175 45176 45177 45178"
## [380] "PMC12877124 PMC_DL/PMC12877124/supplementaryfiles/41467_2025_67959_MOESM4_ESM.xlsx Hsapiens 48 44986 44987 44986 44995 44987 44988 44989 44990 44991 44992 44993 44994 45170 45179 45180 45181 45171 45172 45173 45174 45175 45176 45177 45178 44986 44987 44986 44995 44987 44988 44989 44990 44991 44992 44993 44994 45170 45179 45180 45181 45171 45172 45173 45174 45175 45176 45177 45178"
## [381] "PMC12877124 PMC_DL/PMC12877124/supplementaryfiles/41467_2025_67959_MOESM4_ESM.xlsx Hsapiens 48 44986 44987 44986 44995 44987 44988 44989 44990 44991 44992 44993 44994 45170 45179 45180 45181 45171 45172 45173 45174 45175 45176 45177 45178 44986 44987 44986 44995 44987 44988 44989 44990 44991 44992 44993 44994 45170 45179 45180 45181 45171 45172 45173 45174 45175 45176 45177 45178"
## [382] "PMC12877124 PMC_DL/PMC12877124/supplementaryfiles/41467_2025_67959_MOESM4_ESM.xlsx Hsapiens 48 44986 44987 44986 44995 44987 44988 44989 44990 44991 44992 44993 44994 45170 45179 45180 45181 45171 45172 45173 45174 45175 45176 45177 45178 44986 44987 44986 44995 44987 44988 44989 44990 44991 44992 44993 44994 45170 45179 45180 45181 45171 45172 45173 45174 45175 45176 45177 45178"
## [383] "PMC12877124 PMC_DL/PMC12877124/supplementaryfiles/41467_2025_67959_MOESM4_ESM.xlsx Hsapiens 48 44986 44987 44986 44995 44987 44988 44989 44990 44991 44992 44993 44994 45170 45179 45180 45181 45171 45172 45173 45174 45175 45176 45177 45178 44986 44987 44986 44995 44987 44988 44989 44990 44991 44992 44993 44994 45170 45179 45180 45181 45171 45172 45173 45174 45175 45176 45177 45178"
## [384] "PMC12877124 PMC_DL/PMC12877124/supplementaryfiles/41467_2025_67959_MOESM4_ESM.xlsx Hsapiens 48 44986 44987 44986 44995 44987 44988 44989 44990 44991 44992 44993 44994 45170 45179 45180 45181 45171 45172 45173 45174 45175 45176 45177 45178 44986 44987 44986 44995 44987 44988 44989 44990 44991 44992 44993 44994 45170 45179 45180 45181 45171 45172 45173 45174 45175 45176 45177 45178"
## [385] "PMC12877124 PMC_DL/PMC12877124/supplementaryfiles/41467_2025_67959_MOESM4_ESM.xlsx Hsapiens 48 44986 44987 44986 44995 44987 44988 44989 44990 44991 44992 44993 44994 45170 45179 45180 45181 45171 45172 45173 45174 45175 45176 45177 45178 44986 44987 44986 44995 44987 44988 44989 44990 44991 44992 44993 44994 45170 45179 45180 45181 45171 45172 45173 45174 45175 45176 45177 45178"
## [386] "PMC12877394 PMC_DL/PMC12877394/supplementaryfiles/ab-25-0347-Supplementary-2.xlsx Hsapiens 9 45358 45542 45542 45354 45546 45539 45544 45357 45357"
## [387] "PMC12874802 PMC_DL/PMC12874802/supplementaryfiles/12864_2025_12476_MOESM2_ESM.xlsx Hsapiens 1 45353"
## [388] "PMC12872948 PMC_DL/PMC12872948/supplementaryfiles/12672_2026_4408_MOESM1_ESM.xlsx Hsapiens 2 45718 45717"
## [389] "PMC12872948 PMC_DL/PMC12872948/supplementaryfiles/12672_2026_4408_MOESM1_ESM.xlsx Hsapiens 9 45717 45718 45719 45915 45910 45904 45718 45906 45717"
## [390] "PMC12873371 zip/Supplementary_Data_2.xlsx Mmusculus 8 43895 44076 43894 43892 44082 44081 44079 44079"
## [391] "PMC12873371 zip/Supplementary_Data_1.xlsx Mmusculus 29 44079 44083 44079 44078 44083 44083 44075 44076 44078 44075 44082 44081 44083 44083 44083 44084 44083 44083 44078 44079 44078 44081 44080 44080 44080 44081 44083 44085 44083"
## [392] "PMC12873371 zip/Supplementary_Data_3.xlsx Drerio 20 44445 44445 44445 44454 44451 44451 44451 44451 44441 44441 44262 44449 44449 44449 44449 44445 44454 44449 44451 44451"
## [393] "PMC12873423 PMC_DL/PMC12873423/supplementaryfiles/42003_2025_9440_MOESM4_ESM.xlsx Hsapiens 22 44990 44986 45176 45173 44986 45178 44991 44992 44987 44987 45184 45174 44994 44993 44988 45175 45180 45172 45179 45177 45171 44989"
## [394] "PMC12874702 PMC_DL/PMC12874702/supplementaryfiles/12943_2025_2545_MOESM9_ESM.xlsx Hsapiens 6 44811 44806 44813 44809 44810 44815"
## [395] "PMC12874702 PMC_DL/PMC12874702/supplementaryfiles/12943_2025_2545_MOESM9_ESM.xlsx Hsapiens 6 44811 44815 44810 44806 44813 44809"
## [396] "PMC12868714 PMC_DL/PMC12868714/supplementaryfiles/41467_2026_68774_MOESM7_ESM.xlsx Hsapiens 27 45718 45903 45904 45718 45907 45906 45723 45911 45725 45912 45720 45717 45722 45914 45908 45724 45902 45992 45726 45719 45901 45727 45909 45905 45717 45910 45721"
## [397] "PMC12868714 PMC_DL/PMC12868714/supplementaryfiles/41467_2026_68774_MOESM7_ESM.xlsx Hsapiens 27 45718 45903 45904 45718 45907 45906 45723 45911 45725 45912 45720 45717 45722 45914 45908 45724 45902 45992 45726 45719 45901 45727 45909 45905 45717 45910 45721"
## [398] "PMC12868704 PMC_DL/PMC12868704/supplementaryfiles/41540_2025_638_MOESM2_ESM.xlsx Hsapiens 32 45722 45722 45723 45723 45722 45723 45723 45723 45722 45723 45723 45723 45723 45723 45723 45723 45723 45723 45723 45723 45723 45723 45723 45724 45723 45723 45723 45723 45723 45723 45723 45723"
## [399] "PMC12869038 PMC_DL/PMC12869038/supplementaryfiles/mmc2.xlsx Hsapiens 5 45539 45547 45545 45353 45362"
## [400] "PMC12869038 PMC_DL/PMC12869038/supplementaryfiles/mmc2.xlsx Hsapiens 6 45542 45549 45357 45541 45352 45358"
## [401] "PMC12869290 PMC_DL/PMC12869290/supplementaryfiles/mmc2.xlsx Hsapiens 3 45172 45175 44988"
## [402] "PMC12867268 zip/Supplementary_Information_1.xlsx Hsapiens 16 44628 44621 44622 44625 44630 44626 44622 44628 44623 44622 44628 44626 44627 44625 44621 44622"
## [403] "PMC12866162 PMC_DL/PMC12866162/supplementaryfiles/mmc8.xlsx Hsapiens 4 36951 36951 37316 37316"
## [404] "PMC12866162 PMC_DL/PMC12866162/supplementaryfiles/mmc3.xlsx Hsapiens 2 37316 36951"
## [405] "PMC12864151 PMC_DL/PMC12864151/supplementaryfiles/deaf238_supplementary_table_s2.xlsx Hsapiens 5 44631 44623 44622 44807 44810"
## [406] "PMC12861156 PMC_DL/PMC12861156/supplementaryfiles/mmc1.xlsx Hsapiens 1 45718"
## [407] "PMC12861156 PMC_DL/PMC12861156/supplementaryfiles/mmc2.xlsx Hsapiens 1 45718"
## [408] "PMC12861072 PMC_DL/PMC12861072/supplementaryfiles/11658_2025_840_MOESM9_ESM.xlsx Hsapiens 1 45912"
## [409] "PMC12860274 zip/all_original_document/fig3/GSE161533/all.xls Hsapiens 10 2026/09/15 2026/03/06 2026/03/02 2026/03/03 2026/03/05 2026/12/01 2026/03/08 2026/03/09 2026/03/10 2026/03/11"
## [410] "PMC12858702 PMC_DL/PMC12858702/supplementaryfiles/18_2025_6039_MOESM2_ESM.xlsx Hsapiens 2 44815 44896"
## [411] "PMC12858516 PMC_DL/PMC12858516/supplementaryfiles/10067_2025_7669_MOESM1_ESM.xlsx Hsapiens 16 44991 44992 44987 44988 45184 44994 44993 44990 44986 44987 44988 44987 44990 44992 44991 44993"
## [412] "PMC12315878 PMC_DL/PMC12315878/supplementaryfiles/Supplemental_Table_S13.xlsx Hsapiens 4 45352 45358 45355 45537"
## [413] "PMC12315878 PMC_DL/PMC12315878/supplementaryfiles/Supplemental_Tables.xlsx Hsapiens 14 45353 45352 45358 45355 45352 45357 45362 45354 45627 45359 45356 45360 45361 45353"
## [414] "PMC12315868 PMC_DL/PMC12315868/supplementaryfiles/Supplemental_Data_S1.xlsx Hsapiens 2 45183 44996"
## [415] "PMC12315868 PMC_DL/PMC12315868/supplementaryfiles/Supplemental_Data_S1.xlsx Hsapiens 1 44993"In depth look at the errors
Let’s investigate the errors in more detail.
# By species
SPECIES <- sapply(strsplit(ERROR_GENELISTS," "),"[[",3)
table(SPECIES)## SPECIES
## Athaliana Celegans Dmelanogaster Drerio Ggallus
## 2 3 1 6 32
## Hsapiens Mmusculus Rnorvegicus Scerevisiae
## 343 26 1 1par(mar=c(5,12,4,2))
barplot(table(SPECIES),horiz=TRUE,las=1)
par(mar=c(5,5,4,2))
# Number of affected Excel files per paper
DIST <- table(sapply(strsplit(ERROR_GENELISTS," "),"[[",1))
DIST##
## PMC12315868 PMC12315878 PMC12812445 PMC12820784 PMC12858516 PMC12858702
## 2 2 9 1 1 1
## PMC12860274 PMC12861072 PMC12861156 PMC12864151 PMC12866162 PMC12867268
## 1 1 2 1 2 1
## PMC12868704 PMC12868714 PMC12869038 PMC12869290 PMC12872948 PMC12873371
## 1 2 2 1 2 3
## PMC12873423 PMC12874702 PMC12874802 PMC12877124 PMC12877394 PMC12879437
## 1 2 1 61 1 5
## PMC12881478 PMC12881479 PMC12883303 PMC12884627 PMC12884834 PMC12886973
## 1 9 1 1 1 1
## PMC12888919 PMC12891661 PMC12895049 PMC12895643 PMC12895973 PMC12896660
## 2 1 4 3 3 1
## PMC12898238 PMC12899871 PMC12900434 PMC12901234 PMC12904206 PMC12904788
## 1 2 6 1 2 4
## PMC12908361 PMC12908806 PMC12908926 PMC12909304 PMC12909639 PMC12909843
## 1 2 1 2 1 9
## PMC12910984 PMC12911300 PMC12914052 PMC12915624 PMC12915786 PMC12915790
## 1 1 19 4 2 6
## PMC12916010 PMC12918038 PMC12918127 PMC12923846 PMC12924462 PMC12924553
## 166 2 1 2 2 5
## PMC12926193 PMC12926300 PMC12928591 PMC12928696 PMC12931692 PMC12932945
## 13 1 1 1 8 1
## PMC12933083 PMC12934198 PMC12935552 PMC12937145 PMC12937152 PMC12940610
## 1 1 1 1 1 2
## PMC12940889 PMC12941178 PMC12941274 PMC12945694 PMC12945842 PMC12946660
## 1 1 1 1 1 1summary(as.numeric(DIST))## Min. 1st Qu. Median Mean 3rd Qu. Max.
## 1.000 1.000 1.000 5.321 2.000 166.000hist(DIST,main="Number of affected Excel files per paper")
# PMC Articles with the most errors
DIST_DF <- as.data.frame(DIST)
DIST_DF <- DIST_DF[order(-DIST_DF$Freq),,drop=FALSE]
head(DIST_DF,20)## Var1 Freq
## 55 PMC12916010 166
## 22 PMC12877124 61
## 51 PMC12914052 19
## 61 PMC12926193 13
## 3 PMC12812445 9
## 26 PMC12881479 9
## 48 PMC12909843 9
## 65 PMC12931692 8
## 39 PMC12900434 6
## 54 PMC12915790 6
## 24 PMC12879437 5
## 60 PMC12924553 5
## 33 PMC12895049 4
## 42 PMC12904788 4
## 52 PMC12915624 4
## 18 PMC12873371 3
## 34 PMC12895643 3
## 35 PMC12895973 3
## 1 PMC12315868 2
## 2 PMC12315878 2MOST_ERR_FILES = as.character(DIST_DF[1,1])
MOST_ERR_FILES## [1] "PMC12916010"# Number of errors per paper
NERR <- as.numeric(sapply(strsplit(ERROR_GENELISTS," "),"[[",4))
names(NERR) <- sapply(strsplit(ERROR_GENELISTS," "),"[[",1)
NERR <-tapply(NERR, names(NERR), sum)
NERR## PMC12315868 PMC12315878 PMC12812445 PMC12820784 PMC12858516 PMC12858702
## 3 18 87 14 16 2
## PMC12860274 PMC12861072 PMC12861156 PMC12864151 PMC12866162 PMC12867268
## 10 1 2 5 6 16
## PMC12868704 PMC12868714 PMC12869038 PMC12869290 PMC12872948 PMC12873371
## 32 54 11 3 11 57
## PMC12873423 PMC12874702 PMC12874802 PMC12877124 PMC12877394 PMC12879437
## 22 12 1 1989 9 115
## PMC12881478 PMC12881479 PMC12883303 PMC12884627 PMC12884834 PMC12886973
## 1 49 2 27 1 5
## PMC12888919 PMC12891661 PMC12895049 PMC12895643 PMC12895973 PMC12896660
## 65 2 8 3 3 5
## PMC12898238 PMC12899871 PMC12900434 PMC12901234 PMC12904206 PMC12904788
## 5 2 12 26 31 58
## PMC12908361 PMC12908806 PMC12908926 PMC12909304 PMC12909639 PMC12909843
## 7 5 8 12 12 86
## PMC12910984 PMC12911300 PMC12914052 PMC12915624 PMC12915786 PMC12915790
## 12 1 381 15 4 20
## PMC12916010 PMC12918038 PMC12918127 PMC12923846 PMC12924462 PMC12924553
## 478 17 1 39 44 18
## PMC12926193 PMC12926300 PMC12928591 PMC12928696 PMC12931692 PMC12932945
## 67 4 1 8 53 26
## PMC12933083 PMC12934198 PMC12935552 PMC12937145 PMC12937152 PMC12940610
## 1 4 16 31 13 12
## PMC12940889 PMC12941178 PMC12941274 PMC12945694 PMC12945842 PMC12946660
## 28 1 8 10 25 3hist(NERR,main="number of errors per PMC article")
NERR_DF <- as.data.frame(NERR)
NERR_DF <- NERR_DF[order(-NERR_DF$NERR),,drop=FALSE]
head(NERR_DF,20)## NERR
## PMC12877124 1989
## PMC12916010 478
## PMC12914052 381
## PMC12879437 115
## PMC12812445 87
## PMC12909843 86
## PMC12926193 67
## PMC12888919 65
## PMC12904788 58
## PMC12873371 57
## PMC12868714 54
## PMC12931692 53
## PMC12881479 49
## PMC12924462 44
## PMC12923846 39
## PMC12868704 32
## PMC12904206 31
## PMC12937145 31
## PMC12940889 28
## PMC12884627 27MOST_ERR = rownames(NERR_DF)[1]
MOST_ERR## [1] "PMC12877124"Journals affected
GENELIST_ERROR_ARTICLES <- gsub("PMC","",GENELIST_ERROR_ARTICLES)
### JSON PARSING is more reliable than XML
ARTICLES <- esummary( GENELIST_ERROR_ARTICLES , db="pmc" , retmode = "json" )
ARTICLE_DATA <- reutils::content(ARTICLES,as= "parsed")
ARTICLE_DATA <- ARTICLE_DATA$result
ARTICLE_DATA <- ARTICLE_DATA[2:length(ARTICLE_DATA)]
JOURNALS <- unlist(lapply(ARTICLE_DATA,function(x) {x$fulljournalname} ))
JOURNALS_TABLE <- table(JOURNALS)
JOURNALS_TABLE <- JOURNALS_TABLE[order(-JOURNALS_TABLE)]
length(JOURNALS_TABLE)## [1] 56par(mar=c(5,25,4,2))
barplot(head(JOURNALS_TABLE,10), horiz=TRUE, las=1,
xlab="Articles with gene name errors in supp files",
main="Top journals this month")
Journal of the month winner
Congrats to our Journal of the Month winner!
JOURNAL_WINNER <- names(head(JOURNALS_TABLE,1))
JOURNAL_WINNER## [1] "Nature communications"Paper of the month winners
There are two categories:
Paper with the most suplementary files affected by gene name errors (MOST_ERR_FILES)
Paper with the most gene names converted to dates (MOST_ERR)
Sometimes, one paper can win both categories. Congrats to our winners.
Paper with most files affected
MOST_ERR_FILES <- gsub("PMC","",MOST_ERR_FILES)
ARTICLES <- esummary( MOST_ERR_FILES , db="pmc" , retmode = "json" )
ARTICLE_DATA <- reutils::content(ARTICLES,as= "parsed")
ARTICLE_DATA <- ARTICLE_DATA[2]
ARTICLE_DATA## $result
## $result$uids
## [1] "12916010"
##
## $result$`12916010`
## $result$`12916010`$uid
## [1] "12916010"
##
## $result$`12916010`$pubdate
## [1] "2026 Feb 2"
##
## $result$`12916010`$epubdate
## [1] ""
##
## $result$`12916010`$printpubdate
## [1] "2026 Feb 2"
##
## $result$`12916010`$source
## [1] "Mol Biol Evol"
##
## $result$`12916010`$authors
## name authtype
## 1 Wu SX Author
## 2 Wang GW Author
## 3 Wan RD Author
## 4 Yan RG Author
## 5 Gao X Author
## 6 Zhang RN Author
## 7 Yang QL Author
## 8 Fang YG Author
## 9 Jia GX Author
## 10 Yang QE Author
##
## $result$`12916010`$title
## [1] "Dynamic regulation of spermatogenesis and hybrid sterility revealed by single-cell analysis in yak and cattle."
##
## $result$`12916010`$volume
## [1] "43"
##
## $result$`12916010`$issue
## [1] "2"
##
## $result$`12916010`$pages
## [1] ""
##
## $result$`12916010`$articleids
## idtype value
## 1 pmid 41622528
## 2 pmcid PMC12916010
## 3 doi 10.1093/molbev/msag027
## 4 pii 8452200
##
## $result$`12916010`$fulljournalname
## [1] "Molecular biology and evolution"
##
## $result$`12916010`$sortdate
## [1] "2026/02/02 00:00"
##
## $result$`12916010`$pmclivedate
## [1] "2026/02/19"Paper with most date conversions
MOST_ERR <- gsub("PMC","",MOST_ERR)
ARTICLE_DATA <- esummary(MOST_ERR,db = "pmc" , retmode = "json" )
ARTICLE_DATA <- reutils::content(ARTICLE_DATA,as= "parsed")
ARTICLE_DATA## $header
## $header$type
## [1] "esummary"
##
## $header$version
## [1] "0.3"
##
##
## $result
## $result$uids
## [1] "12877124"
##
## $result$`12877124`
## $result$`12877124`$uid
## [1] "12877124"
##
## $result$`12877124`$pubdate
## [1] "2026 Jan 10"
##
## $result$`12877124`$epubdate
## [1] "2026 Jan 10"
##
## $result$`12877124`$printpubdate
## [1] ""
##
## $result$`12877124`$source
## [1] "Nat Commun"
##
## $result$`12877124`$authors
## name authtype
## 1 Michael Deans PJ Author
## 2 Retallick-Townsley KG Author
## 3 Li A Author
## 4 Seah C Author
## 5 Johnson J Author
## 6 Garcia Gonzalez J Author
## 7 Cao E Author
## 8 Schrode N Author
## 9 Yu A Author
## 10 Cartwright S Author
## 11 Voloudakis G Author
## 12 Zhang W Author
## 13 Wang M Author
## 14 Fullard JF Author
## 15 Girdhar K Author
## 16 Stahl E Author
## 17 Akbarian S Author
## 18 Zhang B Author
## 19 Roussos P Author
## 20 O'Reilly P Author
## 21 Huckins LM Author
## 22 Brennand KJ Author
##
## $result$`12877124`$title
## [1] "Functional implications of polygenic risk for schizophrenia in human neurons."
##
## $result$`12877124`$volume
## [1] "17"
##
## $result$`12877124`$issue
## [1] "1"
##
## $result$`12877124`$pages
## [1] "1355"
##
## $result$`12877124`$articleids
## idtype value
## 1 pmid 41519853
## 2 pmcid PMC12877124
## 3 doi 10.1038/s41467-025-67959-z
## 4 pii 10.1038/s41467-025-67959-z
##
## $result$`12877124`$fulljournalname
## [1] "Nature communications"
##
## $result$`12877124`$sortdate
## [1] "2026/01/10 00:00"
##
## $result$`12877124`$pmclivedate
## [1] "2026/02/07"Trend info
TODO: To plot the trend over the past 6 months.
References
Zeeberg, B.R., Riss, J., Kane, D.W. et al. Mistaken Identifiers: Gene name errors can be introduced inadvertently when using Excel in bioinformatics. BMC Bioinformatics 5, 80 (2004). https://doi.org/10.1186/1471-2105-5-80
Ziemann, M., Eren, Y. & El-Osta, A. Gene name errors are widespread in the scientific literature. Genome Biol 17, 177 (2016). https://doi.org/10.1186/s13059-016-1044-7
SessionInfo
sessionInfo()## R version 4.6.1 (2026-06-24)
## Platform: x86_64-pc-linux-gnu
## Running under: Ubuntu 24.04.4 LTS
##
## Matrix products: default
## BLAS: /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3
## LAPACK: /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblasp-r0.3.26.so; LAPACK version 3.12.0
##
## locale:
## [1] LC_CTYPE=en_AU.UTF-8 LC_NUMERIC=C
## [3] LC_TIME=en_AU.UTF-8 LC_COLLATE=en_AU.UTF-8
## [5] LC_MONETARY=en_AU.UTF-8 LC_MESSAGES=en_AU.UTF-8
## [7] LC_PAPER=en_AU.UTF-8 LC_NAME=C
## [9] LC_ADDRESS=C LC_TELEPHONE=C
## [11] LC_MEASUREMENT=en_AU.UTF-8 LC_IDENTIFICATION=C
##
## time zone: Australia/Melbourne
## tzcode source: system (glibc)
##
## attached base packages:
## [1] stats graphics grDevices utils datasets methods base
##
## other attached packages:
## [1] readxl_1.5.0 reutils_0.2.3 xml2_1.5.2 jsonlite_2.0.0
##
## loaded via a namespace (and not attached):
## [1] assertthat_0.2.1 digest_0.6.39 XML_3.99-0.23 R6_2.6.1
## [5] fastmap_1.2.0 cellranger_1.1.0 xfun_0.57 cachem_1.1.0
## [9] knitr_1.51 RCurl_1.98-1.18 htmltools_0.5.9 rmarkdown_2.31
## [13] lifecycle_1.0.5 bitops_1.0-9 cli_3.6.6 sass_0.4.10
## [17] jquerylib_0.1.4 compiler_4.6.1 tools_4.6.1 evaluate_1.0.5
## [21] bslib_0.11.0 yaml_2.3.12 otel_0.2.0 rlang_1.2.0