This code is available at https://github.com/aaronsk7/guppy-methylation

https://cran.r-project.org/web/packages/RCircos/vignettes/Using_RCircos.pdf

dmrs before annotation

library(GenomicFeatures)
## Loading required package: BiocGenerics
## Loading required package: parallel
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## Attaching package: 'BiocGenerics'
## The following objects are masked from 'package:parallel':
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##     clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
##     clusterExport, clusterMap, parApply, parCapply, parLapply,
##     parLapplyLB, parRapply, parSapply, parSapplyLB
## The following objects are masked from 'package:stats':
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## The following objects are masked from 'package:base':
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##     dirname, do.call, duplicated, eval, evalq, Filter, Find, get, grep,
##     grepl, intersect, is.unsorted, lapply, Map, mapply, match, mget,
##     order, paste, pmax, pmax.int, pmin, pmin.int, Position, rank,
##     rbind, Reduce, rownames, sapply, setdiff, sort, table, tapply,
##     union, unique, unsplit, which.max, which.min
## Loading required package: S4Vectors
## Loading required package: stats4
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## Attaching package: 'S4Vectors'
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##     expand.grid, I, unname
## Loading required package: IRanges
## Loading required package: GenomeInfoDb
## Loading required package: GenomicRanges
## Loading required package: AnnotationDbi
## Loading required package: Biobase
## Welcome to Bioconductor
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##     Vignettes contain introductory material; view with
##     'browseVignettes()'. To cite Bioconductor, see
##     'citation("Biobase")', and for packages 'citation("pkgname")'.
library(BiocManager)
library(RCircos)
library(dplyr)
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## Attaching package: 'dplyr'