Sample	total_passed	total_failed	secondary_passed	secondary_failed	supplementary_passed	supplementary_failed	duplicates_passed	duplicates_failed	mapped_passed	mapped_failed	mapped_passed_pct	mapped_failed_pct	paired in sequencing_passed	paired in sequencing_failed	read1_passed	read1_failed	read2_passed	read2_failed	properly paired_passed	properly paired_failed	properly paired_passed_pct	properly paired_failed_pct	with itself and mate mapped_passed	with itself and mate mapped_failed	singletons_passed	singletons_failed	singletons_passed_pct	singletons_failed_pct	with mate mapped to a different chr_passed	with mate mapped to a different chr_failed	with mate mapped to a different chr (mapQ >= 5)_passed	with mate mapped to a different chr (mapQ >= 5)_failed	flagstat_total
Clear2F-R1	69705203	0	1682413	0	0	0	4856269	0	69271092	0	99.38	nan	68022790	0	34011395	0	34011395	0	61637988	0	90.61	nan	67333052	0	255627	0	0.38	nan	4351370	0	2014262	0	69705203
Clear2F-R2	144747473	0	3327785	0	0	0	10231344	0	143372367	0	99.05	nan	141419688	0	70709844	0	70709844	0	126968038	0	89.78	nan	139367894	0	676688	0	0.48	nan	9493062	0	4418589	0	144747473
Clear2F-R3	149523818	0	3686170	0	0	0	11536161	0	148099891	0	99.05	nan	145837648	0	72918824	0	72918824	0	131484278	0	90.16	nan	143763184	0	650537	0	0.45	nan	9125252	0	4183786	0	149523818
Foundation	312380217	0	9289603	0	0	0	22287800	0	310013628	0	99.24	nan	303090614	0	151545307	0	151545307	0	259734110	0	85.7	nan	299216942	0	1507083	0	0.5	nan	22775954	0	10708021	0	312380217
Green3F-R1	172898973	0	4126669	0	0	0	12792528	0	171565326	0	99.23	nan	168772304	0	84386152	0	84386152	0	149419288	0	88.53	nan	166621956	0	816701	0	0.48	nan	12376854	0	5869588	0	172898973
Green3F-R2	146629970	0	3463570	0	0	0	10570044	0	145338960	0	99.12	nan	143166400	0	71583200	0	71583200	0	127832522	0	89.29	nan	141210104	0	665286	0	0.46	nan	9654318	0	4460626	0	146629970
Green3F-R3	193133996	0	4484034	0	0	0	15388077	0	191709079	0	99.26	nan	188649962	0	94324981	0	94324981	0	167415458	0	88.74	nan	186350860	0	874185	0	0.46	nan	13636606	0	6412675	0	193133996
Lilac4F-R1	169184978	0	3808518	0	0	0	11637885	0	167584532	0	99.05	nan	165376460	0	82688230	0	82688230	0	146303828	0	88.47	nan	162937696	0	838318	0	0.51	nan	12134912	0	5727999	0	169184978
Lilac4F-R2	147097093	0	3502225	0	0	0	10461186	0	145736224	0	99.07	nan	143594868	0	71797434	0	71797434	0	128359698	0	89.39	nan	141560098	0	673901	0	0.47	nan	9645052	0	4505954	0	147097093
Lilac4F-R3	106406378	0	2435406	0	0	0	7206326	0	105626258	0	99.27	nan	103970972	0	51985486	0	51985486	0	92659092	0	89.12	nan	102722274	0	468578	0	0.45	nan	7423728	0	3487825	0	106406378