Sample	total_passed	total_failed	secondary_passed	secondary_failed	supplementary_passed	supplementary_failed	duplicates_passed	duplicates_failed	mapped_passed	mapped_failed	mapped_passed_pct	mapped_failed_pct	paired in sequencing_passed	paired in sequencing_failed	read1_passed	read1_failed	read2_passed	read2_failed	properly paired_passed	properly paired_failed	properly paired_passed_pct	properly paired_failed_pct	with itself and mate mapped_passed	with itself and mate mapped_failed	singletons_passed	singletons_failed	singletons_passed_pct	singletons_failed_pct	with mate mapped to a different chr_passed	with mate mapped to a different chr_failed	with mate mapped to a different chr (mapQ >= 5)_passed	with mate mapped to a different chr (mapQ >= 5)_failed	flagstat_total
T09-F-N	3389946	0	116914	0	0	0	22196	0	3370575	0	99.43	nan	3273032	0	1636516	0	1636516	0	2845546	0	86.94	nan	3241912	0	11749	0	0.36	nan	218376	0	99834	0	3389946
T09-F-O	2419772	0	103202	0	0	0	15591	0	2405935	0	99.43	nan	2316570	0	1158285	0	1158285	0	1956914	0	84.47	nan	2294416	0	8317	0	0.36	nan	157654	0	69500	0	2419772
T11-F-N	3732675	0	105523	0	0	0	24598	0	3718130	0	99.61	nan	3627152	0	1813576	0	1813576	0	3393034	0	93.55	nan	3604366	0	8241	0	0.23	nan	161944	0	74926	0	3732675
T11-F-O	4285320	0	126600	0	0	0	30598	0	4262457	0	99.47	nan	4158720	0	2079360	0	2079360	0	3735006	0	89.81	nan	4122342	0	13515	0	0.32	nan	258516	0	118795	0	4285320
T12-F-N	5169786	0	157496	0	0	0	37883	0	5143644	0	99.49	nan	5012290	0	2506145	0	2506145	0	4538942	0	90.56	nan	4970944	0	15204	0	0.3	nan	295270	0	136562	0	5169786
T12-F-O	4536184	0	175086	0	0	0	32333	0	4511816	0	99.46	nan	4361098	0	2180549	0	2180549	0	3797720	0	87.08	nan	4322226	0	14504	0	0.33	nan	283630	0	127153	0	4536184