Module	Section	Sample Name	Source
Samtools	flagstat	T09-F-N	/mnt/bfx4/guppy_methylseq/test_data2/T09-F-N.bam.stats.txt
Samtools	flagstat	T09-F-O	/mnt/bfx4/guppy_methylseq/test_data2/T09-F-O.bam.stats.txt
Samtools	flagstat	T11-F-N	/mnt/bfx4/guppy_methylseq/test_data2/T11-F-N.bam.stats.txt
Samtools	flagstat	T11-F-O	/mnt/bfx4/guppy_methylseq/test_data2/T11-F-O.bam.stats.txt
Samtools	flagstat	T12-F-N	/mnt/bfx4/guppy_methylseq/test_data2/T12-F-N.bam.stats.txt
Samtools	flagstat	T12-F-O	/mnt/bfx4/guppy_methylseq/test_data2/T12-F-O.bam.stats.txt
Skewer	all_sections	T09-F-N_S1_L001_R1_001	/mnt/bfx4/guppy_methylseq/test_data2/T09-F-N_S1_L001_R1_001.fastq-trimmed.log
Skewer	all_sections	T09-F-O_S4_L001_R1_001	/mnt/bfx4/guppy_methylseq/test_data2/T09-F-O_S4_L001_R1_001.fastq-trimmed.log
Skewer	all_sections	T11-F-N_S2_L001_R1_001	/mnt/bfx4/guppy_methylseq/test_data2/T11-F-N_S2_L001_R1_001.fastq-trimmed.log
Skewer	all_sections	T11-F-O_S5_L001_R1_001	/mnt/bfx4/guppy_methylseq/test_data2/T11-F-O_S5_L001_R1_001.fastq-trimmed.log
Skewer	all_sections	T12-F-N_S3_L001_R1_001	/mnt/bfx4/guppy_methylseq/test_data2/T12-F-N_S3_L001_R1_001.fastq-trimmed.log
Skewer	all_sections	T12-F-O_S6_L001_R1_001	/mnt/bfx4/guppy_methylseq/test_data2/T12-F-O_S6_L001_R1_001.fastq-trimmed.log
FastQC	all_sections	T09-F-N_S1_L001_R1_001	/mnt/bfx4/guppy_methylseq/test_data2/T09-F-N_S1_L001_R1_001_fastqc.zip
FastQC	all_sections	T09-F-N_S1_L001_R2_001	/mnt/bfx4/guppy_methylseq/test_data2/T09-F-N_S1_L001_R2_001_fastqc.zip
FastQC	all_sections	T09-F-O_S4_L001_R1_001	/mnt/bfx4/guppy_methylseq/test_data2/T09-F-O_S4_L001_R1_001_fastqc.zip
FastQC	all_sections	T09-F-O_S4_L001_R2_001	/mnt/bfx4/guppy_methylseq/test_data2/T09-F-O_S4_L001_R2_001_fastqc.zip
FastQC	all_sections	T11-F-N_S2_L001_R1_001	/mnt/bfx4/guppy_methylseq/test_data2/T11-F-N_S2_L001_R1_001_fastqc.zip
FastQC	all_sections	T11-F-N_S2_L001_R2_001	/mnt/bfx4/guppy_methylseq/test_data2/T11-F-N_S2_L001_R2_001_fastqc.zip
FastQC	all_sections	T11-F-O_S5_L001_R1_001	/mnt/bfx4/guppy_methylseq/test_data2/T11-F-O_S5_L001_R1_001_fastqc.zip
FastQC	all_sections	T11-F-O_S5_L001_R2_001	/mnt/bfx4/guppy_methylseq/test_data2/T11-F-O_S5_L001_R2_001_fastqc.zip
FastQC	all_sections	T12-F-N_S3_L001_R1_001	/mnt/bfx4/guppy_methylseq/test_data2/T12-F-N_S3_L001_R1_001_fastqc.zip
FastQC	all_sections	T12-F-N_S3_L001_R2_001	/mnt/bfx4/guppy_methylseq/test_data2/T12-F-N_S3_L001_R2_001_fastqc.zip
FastQC	all_sections	T12-F-O_S6_L001_R1_001	/mnt/bfx4/guppy_methylseq/test_data2/T12-F-O_S6_L001_R1_001_fastqc.zip
FastQC	all_sections	T12-F-O_S6_L001_R2_001	/mnt/bfx4/guppy_methylseq/test_data2/T12-F-O_S6_L001_R2_001_fastqc.zip