Mitch Report
Antony Kaspi & Mark Ziemann
date generated: 2020-08-06
Background
Mitch performs unidimensional and multidimensional gene set enrichment analysis. The concept behind this dates to work by Cox and Mann (https://doi.org/10.1186/1471-2105-13-S16-S12). This implementation is suited to R based workflows of multi-omics datasets. This software was developed by Antony Kaspi and Mark Ziemann. Learn more about Mitch at the website: https://github.com/markziemann/Mitch
Input profiles
Here is the first few lines of the input profile.
## x
## 0610005C13Rik 0.5455811
## 0610009B22Rik -0.2758387
## 0610009E02Rik -0.1942335
## 0610009L18Rik 0.6285430
## 0610010F05Rik -1.9585193
## 0610012D04Rik -7.3024303Here are some metrics about the input data profile:
| Profile metrics | |
|---|---|
| num_genesets | 26 |
| num_genes_in_profile | 16428 |
| duplicated_genes_present | 0 |
| num_profile_genes_in_sets | 1115 |
| num_profile_genes_not_in_sets | 15313 |
Here is a plot of the input profiles. Note the dynamic ranges. 
Here is the contour plot of the profile including all detected genes.
Input genesets
Here are some metrics about the gene sets used: GMT file of genesets: enhancer_motifs.gmt
| Gene sets metrics | |
|---|---|
| num_genesets | 26 |
| num_genesets_excluded | 9 |
| num_genesets_included | 17 |
Differential pathway expression
Interactive enrichment scatterplot
Significance is calculated by -log10(p-value). All points shown are FDR<0.05.
Results table
Top N= 17 gene sets
| set | setSize | pANOVA | s.dist | p.adjustANOVA |
|---|---|---|---|---|
| motif21.motif.bed PR(NR) | 21 | 0.008080 | -0.33400 | 0.06860 |
| motif12.motif.bed TEAD2(TEA) | 68 | 0.000323 | -0.25200 | 0.00548 |
| motif4.motif.bed GRE(NR),IR3 | 32 | 0.061100 | -0.19100 | 0.25000 |
| motif8.motif.bed TEAD4(TEA) | 32 | 0.061100 | -0.19100 | 0.25000 |
| motif17.motif.bed TEAD(TEA) | 21 | 0.172000 | 0.17200 | 0.37200 |
| motif5.motif.bed Six1(Homeobox) | 21 | 0.203000 | 0.16000 | 0.38400 |
| motif3.motif.bed GRE(NR),IR3 | 34 | 0.175000 | -0.13400 | 0.37200 |
| motif1.motif.bed Six2(Homeobox) | 92 | 0.073600 | 0.10800 | 0.25000 |
| motif14.motif.bed Six4(Homeobox) | 114 | 0.108000 | -0.08710 | 0.30700 |
| motif11.motif.bed Atf1(bZIP) | 22 | 0.487000 | 0.08560 | 0.55200 |
| motif10.motif.bed Mef2a(MADS) | 51 | 0.361000 | 0.07390 | 0.51200 |
| motif19.motif.bed TGA1(bZIP) | 66 | 0.438000 | -0.05530 | 0.53700 |
| motif23.motif.bed bZIP50(bZIP) | 70 | 0.443000 | -0.05310 | 0.53700 |
| motif2.motif.bed PGR(NR) | 186 | 0.332000 | 0.04130 | 0.51200 |
| motif20.motif.bed Atf2(bZIP) | 337 | 0.308000 | -0.03240 | 0.51200 |
| motif6.motif.bed ARE(NR) | 73 | 0.778000 | 0.01910 | 0.82700 |
| motif7.motif.bed NF1-halfsite(CTF) | 537 | 0.926000 | -0.00236 | 0.92600 |
Results (complete table)
Click HERE to show results for all gene sets
| set | setSize | pANOVA | s.dist | p.adjustANOVA |
|---|---|---|---|---|
| motif21.motif.bed PR(NR) | 21 | 0.008080 | -0.33400 | 0.06860 |
| motif12.motif.bed TEAD2(TEA) | 68 | 0.000323 | -0.25200 | 0.00548 |
| motif4.motif.bed GRE(NR),IR3 | 32 | 0.061100 | -0.19100 | 0.25000 |
| motif8.motif.bed TEAD4(TEA) | 32 | 0.061100 | -0.19100 | 0.25000 |
| motif17.motif.bed TEAD(TEA) | 21 | 0.172000 | 0.17200 | 0.37200 |
| motif5.motif.bed Six1(Homeobox) | 21 | 0.203000 | 0.16000 | 0.38400 |
| motif3.motif.bed GRE(NR),IR3 | 34 | 0.175000 | -0.13400 | 0.37200 |
| motif1.motif.bed Six2(Homeobox) | 92 | 0.073600 | 0.10800 | 0.25000 |
| motif14.motif.bed Six4(Homeobox) | 114 | 0.108000 | -0.08710 | 0.30700 |
| motif11.motif.bed Atf1(bZIP) | 22 | 0.487000 | 0.08560 | 0.55200 |
| motif10.motif.bed Mef2a(MADS) | 51 | 0.361000 | 0.07390 | 0.51200 |
| motif19.motif.bed TGA1(bZIP) | 66 | 0.438000 | -0.05530 | 0.53700 |
| motif23.motif.bed bZIP50(bZIP) | 70 | 0.443000 | -0.05310 | 0.53700 |
| motif2.motif.bed PGR(NR) | 186 | 0.332000 | 0.04130 | 0.51200 |
| motif20.motif.bed Atf2(bZIP) | 337 | 0.308000 | -0.03240 | 0.51200 |
| motif6.motif.bed ARE(NR) | 73 | 0.778000 | 0.01910 | 0.82700 |
| motif7.motif.bed NF1-halfsite(CTF) | 537 | 0.926000 | -0.00236 | 0.92600 |
Detailed Gene set reports
motif21.motif.bed_PR(NR)
| 9 | |
|---|---|
| set | motif21.motif.bed_PR(NR) |
| setSize | 21 |
| pANOVA | 0.00808 |
| s.dist | -0.334 |
| p.adjustANOVA | 0.0686 |
Top enriched genes
| GeneID | Gene Rank |
|---|---|
| Retsat | -7764 |
| St3gal5 | -7383 |
| Atoh8 | -6963 |
| Mat2a | -6519 |
| Gm20536 | -6458 |
| Reep1 | -6197 |
| Tmem56 | -5947 |
| Immt | -4126 |
| Tgoln1 | -3929 |
| Ptcd3 | -3545 |
| Vamp5 | -3116 |
| 0610030E20Rik | -2346 |
| Rwdd3 | -2244 |
| Ggcx | -1713 |
| Alg14 | -1192 |
| Usp39 | -393 |
| Tmem150a | 245 |
| Polr1a | 793 |
| Rnf181 | 4689 |
| Capg | 6403 |
Click HERE to show all gene set members
| GeneID | Gene Rank |
|---|---|
| Retsat | -7764 |
| St3gal5 | -7383 |
| Atoh8 | -6963 |
| Mat2a | -6519 |
| Gm20536 | -6458 |
| Reep1 | -6197 |
| Tmem56 | -5947 |
| Immt | -4126 |
| Tgoln1 | -3929 |
| Ptcd3 | -3545 |
| Vamp5 | -3116 |
| 0610030E20Rik | -2346 |
| Rwdd3 | -2244 |
| Ggcx | -1713 |
| Alg14 | -1192 |
| Usp39 | -393 |
| Tmem150a | 245 |
| Polr1a | 793 |
| Rnf181 | 4689 |
| Capg | 6403 |
| Vamp8 | 6635 |
motif12.motif.bed_TEAD2(TEA)
| 3 | |
|---|---|
| set | motif12.motif.bed_TEAD2(TEA) |
| setSize | 68 |
| pANOVA | 0.000323 |
| s.dist | -0.252 |
| p.adjustANOVA | 0.00548 |
Top enriched genes
| GeneID | Gene Rank |
|---|---|
| Gm10638 | -7882 |
| Tirap | -7629 |
| Siah1a | -7569 |
| Srpr | -7080 |
| Lonp2 | -6982 |
| Pus3 | -6908 |
| Txndc11 | -6367 |
| Trdn | -6270 |
| 2210408I21Rik | -6140 |
| Foxred1 | -6119 |
| Gcnt2 | -5931 |
| Dcps | -5773 |
| Sparcl1 | -5680 |
| Trim23 | -5677 |
| 2610020C07Rik | -5630 |
| Dexi | -5620 |
| Lrp10 | -5377 |
| Impact | -5346 |
| Rars2 | -5161 |
| Tmem14c | -5047 |
Click HERE to show all gene set members
| GeneID | Gene Rank |
|---|---|
| Gm10638 | -7882 |
| Tirap | -7629 |
| Siah1a | -7569 |
| Srpr | -7080 |
| Lonp2 | -6982 |
| Pus3 | -6908 |
| Txndc11 | -6367 |
| Trdn | -6270 |
| 2210408I21Rik | -6140 |
| Foxred1 | -6119 |
| Gcnt2 | -5931 |
| Dcps | -5773 |
| Sparcl1 | -5680 |
| Trim23 | -5677 |
| 2610020C07Rik | -5630 |
| Dexi | -5620 |
| Lrp10 | -5377 |
| Impact | -5346 |
| Rars2 | -5161 |
| Tmem14c | -5047 |
| Fam118b | -5016 |
| Srek1ip1 | -4933 |
| Ppwd1 | -4887 |
| Akirin2 | -4869 |
| Rab10 | -4669 |
| Asxl2 | -4385 |
| Hyls1 | -4366 |
| Abhd4 | -4217 |
| Gspt1 | -3570 |
| 4930581F22Rik | -3519 |
| Zfp292 | -3483 |
| Rsl1d1 | -3419 |
| A730081D07Rik | -3254 |
| Orc3 | -3057 |
| Fam172a | -3051 |
| N4bp1 | -2785 |
| Nkain2 | -2754 |
| 4931414P19Rik | -2740 |
| Kif3c | -1966 |
| Nudt9 | -1680 |
| Slc35a1 | -1242 |
| Adamts6 | -930 |
| Osbpl1a | -863 |
| Dtnb | -785 |
| 1110002L01Rik | -457 |
| Rps13 | -141 |
| Rpusd4 | 195 |
| Aff1 | 390 |
| Pate2 | 1207 |
| Hsd17b11 | 1313 |
| Mrpl52 | 1342 |
| Dad1 | 1496 |
| Cabyr | 1561 |
| Snx29 | 2212 |
| Snn | 2365 |
| Klhl8 | 2677 |
| Pak1ip1 | 3463 |
| Zc3h7a | 3593 |
| Gm10800 | 4026 |
| Gm10801 | 4774 |
| 4930509G22Rik | 4864 |
| Cenpk | 5075 |
| Ttc39c | 5116 |
| Cdon | 5397 |
| St3gal4 | 6688 |
| Anxa2 | 7257 |
| Litaf | 8272 |
| Socs1 | 8518 |
motif4.motif.bed_GRE(NR),IR3
| 13 | |
|---|---|
| set | motif4.motif.bed_GRE(NR),IR3 |
| setSize | 32 |
| pANOVA | 0.0611 |
| s.dist | -0.191 |
| p.adjustANOVA | 0.25 |
Top enriched genes
| GeneID | Gene Rank |
|---|---|
| Tirap | -7629 |
| Srpr | -7080 |
| Pus3 | -6908 |
| Txndc11 | -6367 |
| 2210408I21Rik | -6140 |
| Foxred1 | -6119 |
| Dcps | -5773 |
| 2610020C07Rik | -5630 |
| Dexi | -5620 |
| Fam118b | -5016 |
| Rab10 | -4669 |
| Asxl2 | -4385 |
| Hyls1 | -4366 |
| Gspt1 | -3570 |
| 4930581F22Rik | -3519 |
| Rsl1d1 | -3419 |
| Fam172a | -3051 |
| Kif3c | -1966 |
| Dtnb | -785 |
| 1110002L01Rik | -457 |
Click HERE to show all gene set members
| GeneID | Gene Rank |
|---|---|
| Tirap | -7629 |
| Srpr | -7080 |
| Pus3 | -6908 |
| Txndc11 | -6367 |
| 2210408I21Rik | -6140 |
| Foxred1 | -6119 |
| Dcps | -5773 |
| 2610020C07Rik | -5630 |
| Dexi | -5620 |
| Fam118b | -5016 |
| Rab10 | -4669 |
| Asxl2 | -4385 |
| Hyls1 | -4366 |
| Gspt1 | -3570 |
| 4930581F22Rik | -3519 |
| Rsl1d1 | -3419 |
| Fam172a | -3051 |
| Kif3c | -1966 |
| Dtnb | -785 |
| 1110002L01Rik | -457 |
| Rpusd4 | 195 |
| Pate2 | 1207 |
| Snx29 | 2212 |
| Snn | 2365 |
| Zc3h7a | 3593 |
| Gm10800 | 4026 |
| Gm10801 | 4774 |
| 4930509G22Rik | 4864 |
| Cdon | 5397 |
| St3gal4 | 6688 |
| Litaf | 8272 |
| Socs1 | 8518 |
motif8.motif.bed_TEAD4(TEA)
| 17 | |
|---|---|
| set | motif8.motif.bed_TEAD4(TEA) |
| setSize | 32 |
| pANOVA | 0.0611 |
| s.dist | -0.191 |
| p.adjustANOVA | 0.25 |
Top enriched genes
| GeneID | Gene Rank |
|---|---|
| Tirap | -7629 |
| Srpr | -7080 |
| Pus3 | -6908 |
| Txndc11 | -6367 |
| 2210408I21Rik | -6140 |
| Foxred1 | -6119 |
| Dcps | -5773 |
| 2610020C07Rik | -5630 |
| Dexi | -5620 |
| Fam118b | -5016 |
| Rab10 | -4669 |
| Asxl2 | -4385 |
| Hyls1 | -4366 |
| Gspt1 | -3570 |
| 4930581F22Rik | -3519 |
| Rsl1d1 | -3419 |
| Fam172a | -3051 |
| Kif3c | -1966 |
| Dtnb | -785 |
| 1110002L01Rik | -457 |
Click HERE to show all gene set members
| GeneID | Gene Rank |
|---|---|
| Tirap | -7629 |
| Srpr | -7080 |
| Pus3 | -6908 |
| Txndc11 | -6367 |
| 2210408I21Rik | -6140 |
| Foxred1 | -6119 |
| Dcps | -5773 |
| 2610020C07Rik | -5630 |
| Dexi | -5620 |
| Fam118b | -5016 |
| Rab10 | -4669 |
| Asxl2 | -4385 |
| Hyls1 | -4366 |
| Gspt1 | -3570 |
| 4930581F22Rik | -3519 |
| Rsl1d1 | -3419 |
| Fam172a | -3051 |
| Kif3c | -1966 |
| Dtnb | -785 |
| 1110002L01Rik | -457 |
| Rpusd4 | 195 |
| Pate2 | 1207 |
| Snx29 | 2212 |
| Snn | 2365 |
| Zc3h7a | 3593 |
| Gm10800 | 4026 |
| Gm10801 | 4774 |
| 4930509G22Rik | 4864 |
| Cdon | 5397 |
| St3gal4 | 6688 |
| Litaf | 8272 |
| Socs1 | 8518 |
motif17.motif.bed_TEAD(TEA)
| 5 | |
|---|---|
| set | motif17.motif.bed_TEAD(TEA) |
| setSize | 21 |
| pANOVA | 0.172 |
| s.dist | 0.172 |
| p.adjustANOVA | 0.372 |
Top enriched genes
| GeneID | Gene Rank |
|---|---|
| Arrb1 | 7285 |
| Rab3d | 6433 |
| Cebpa | 6227 |
| Rps3 | 5418 |
| Ccdc159 | 5171 |
| Rhpn2 | 4748 |
| Gpatch1 | 2843 |
| Prkcsh | 2690 |
| Dgat2 | 2511 |
| Rgl3 | 2194 |
| Tmem205 | 2177 |
| Spcs2 | 2008 |
| Gm15635 | 1864 |
| Neu3 | 1402 |
| Gdpd5 | -32 |
| Rnf169 | -1127 |
| Serpinh1 | -2690 |
| Ecsit | -2809 |
| Kank2 | -3074 |
| Ankrd27 | -3463 |
Click HERE to show all gene set members
| GeneID | Gene Rank |
|---|---|
| Arrb1 | 7285 |
| Rab3d | 6433 |
| Cebpa | 6227 |
| Rps3 | 5418 |
| Ccdc159 | 5171 |
| Rhpn2 | 4748 |
| Gpatch1 | 2843 |
| Prkcsh | 2690 |
| Dgat2 | 2511 |
| Rgl3 | 2194 |
| Tmem205 | 2177 |
| Spcs2 | 2008 |
| Gm15635 | 1864 |
| Neu3 | 1402 |
| Gdpd5 | -32 |
| Rnf169 | -1127 |
| Serpinh1 | -2690 |
| Ecsit | -2809 |
| Kank2 | -3074 |
| Ankrd27 | -3463 |
| Pdcd5 | -3624 |
motif5.motif.bed_Six1(Homeobox)
| 14 | |
|---|---|
| set | motif5.motif.bed_Six1(Homeobox) |
| setSize | 21 |
| pANOVA | 0.203 |
| s.dist | 0.16 |
| p.adjustANOVA | 0.384 |
Top enriched genes
| GeneID | Gene Rank |
|---|---|
| Socs1 | 8518 |
| Litaf | 8272 |
| Chl1 | 7175 |
| Pak3 | 6646 |
| Dpy19l1 | 6161 |
| Capn6 | 5034 |
| 4930509G22Rik | 4864 |
| Gm10801 | 4774 |
| Gm10800 | 4026 |
| Chrdl1 | 3893 |
| Zc3h7a | 3593 |
| Snn | 2365 |
| Snx29 | 2212 |
| Tpm3 | 351 |
| Fam172a | -3051 |
| Rsl1d1 | -3419 |
| Gspt1 | -3570 |
| Dexi | -5620 |
| 2610020C07Rik | -5630 |
| 2210408I21Rik | -6140 |
Click HERE to show all gene set members
| GeneID | Gene Rank |
|---|---|
| Socs1 | 8518 |
| Litaf | 8272 |
| Chl1 | 7175 |
| Pak3 | 6646 |
| Dpy19l1 | 6161 |
| Capn6 | 5034 |
| 4930509G22Rik | 4864 |
| Gm10801 | 4774 |
| Gm10800 | 4026 |
| Chrdl1 | 3893 |
| Zc3h7a | 3593 |
| Snn | 2365 |
| Snx29 | 2212 |
| Tpm3 | 351 |
| Fam172a | -3051 |
| Rsl1d1 | -3419 |
| Gspt1 | -3570 |
| Dexi | -5620 |
| 2610020C07Rik | -5630 |
| 2210408I21Rik | -6140 |
| Txndc11 | -6367 |
motif3.motif.bed_GRE(NR),IR3
| 12 | |
|---|---|
| set | motif3.motif.bed_GRE(NR),IR3 |
| setSize | 34 |
| pANOVA | 0.175 |
| s.dist | -0.134 |
| p.adjustANOVA | 0.372 |
Top enriched genes
| GeneID | Gene Rank |
|---|---|
| Tirap | -7629 |
| Srpr | -7080 |
| Pus3 | -6908 |
| Txndc11 | -6367 |
| 2210408I21Rik | -6140 |
| Foxred1 | -6119 |
| Dcps | -5773 |
| 2610020C07Rik | -5630 |
| Dexi | -5620 |
| Fam118b | -5016 |
| Rab10 | -4669 |
| Asxl2 | -4385 |
| Hyls1 | -4366 |
| Gspt1 | -3570 |
| 4930581F22Rik | -3519 |
| Rsl1d1 | -3419 |
| Fam172a | -3051 |
| Kif3c | -1966 |
| Dtnb | -785 |
| 1110002L01Rik | -457 |
Click HERE to show all gene set members
| GeneID | Gene Rank |
|---|---|
| Tirap | -7629 |
| Srpr | -7080 |
| Pus3 | -6908 |
| Txndc11 | -6367 |
| 2210408I21Rik | -6140 |
| Foxred1 | -6119 |
| Dcps | -5773 |
| 2610020C07Rik | -5630 |
| Dexi | -5620 |
| Fam118b | -5016 |
| Rab10 | -4669 |
| Asxl2 | -4385 |
| Hyls1 | -4366 |
| Gspt1 | -3570 |
| 4930581F22Rik | -3519 |
| Rsl1d1 | -3419 |
| Fam172a | -3051 |
| Kif3c | -1966 |
| Dtnb | -785 |
| 1110002L01Rik | -457 |
| Rpusd4 | 195 |
| Pate2 | 1207 |
| Snx29 | 2212 |
| Snn | 2365 |
| Zc3h7a | 3593 |
| Gm10800 | 4026 |
| Gm10801 | 4774 |
| 4930509G22Rik | 4864 |
| Cdon | 5397 |
| Dpy19l1 | 6161 |
| St3gal4 | 6688 |
| Chl1 | 7175 |
| Litaf | 8272 |
| Socs1 | 8518 |
motif1.motif.bed_Six2(Homeobox)
| 7 | |
|---|---|
| set | motif1.motif.bed_Six2(Homeobox) |
| setSize | 92 |
| pANOVA | 0.0736 |
| s.dist | 0.108 |
| p.adjustANOVA | 0.25 |
Top enriched genes
| GeneID | Gene Rank |
|---|---|
| Fcho1 | 8327 |
| Il27ra | 8151 |
| Bst2 | 8143 |
| Ankle1 | 7885 |
| Plk2 | 7884 |
| Pear1 | 7828 |
| Asf1b | 7524 |
| Lama1 | 7435 |
| Flt3 | 7217 |
| Chaf1b | 7216 |
| Jak3 | 7053 |
| B3gnt3 | 6926 |
| Kirrel | 6864 |
| Samd1 | 6304 |
| Igsf9b | 6207 |
| Flt1 | 6192 |
| N4bp3 | 5986 |
| Wasf3 | 5902 |
| Pomp | 5772 |
| Ddx39 | 5573 |
Click HERE to show all gene set members
| GeneID | Gene Rank |
|---|---|
| Fcho1 | 8327 |
| Il27ra | 8151 |
| Bst2 | 8143 |
| Ankle1 | 7885 |
| Plk2 | 7884 |
| Pear1 | 7828 |
| Asf1b | 7524 |
| Lama1 | 7435 |
| Flt3 | 7217 |
| Chaf1b | 7216 |
| Jak3 | 7053 |
| B3gnt3 | 6926 |
| Kirrel | 6864 |
| Samd1 | 6304 |
| Igsf9b | 6207 |
| Flt1 | 6192 |
| N4bp3 | 5986 |
| Wasf3 | 5902 |
| Pomp | 5772 |
| Ddx39 | 5573 |
| Plvap | 5486 |
| Dcaf15 | 5444 |
| Unc13a | 5368 |
| Slc27a1 | 5338 |
| Rpl35 | 5217 |
| Scn1a | 5146 |
| A930012O16Rik | 5124 |
| Nhp2 | 4963 |
| Pkn1 | 4870 |
| Ano8 | 4765 |
| Cd1d1 | 4755 |
| Fcrls | 4722 |
| Setd4 | 4528 |
| Etv3 | 4485 |
| Nr2f6 | 4413 |
| Gipc1 | 4386 |
| Rfx1 | 4129 |
| Hnrnpab | 4019 |
| Usp12 | 3690 |
| Kat2b | 3640 |
| Sim2 | 3565 |
| Cdk8 | 3025 |
| Rmnd5b | 2693 |
| Fam129c | 1869 |
| 1700067K01Rik | 1644 |
| Haus8 | 1573 |
| Ptger1 | 1519 |
| Gtpbp3 | 1424 |
| Mtus2 | 1304 |
| Ushbp1 | 844 |
| Tecr | 764 |
| Myo9b | 713 |
| Gtf3a | 136 |
| Use1 | -64 |
| Pitx2 | -228 |
| Papola | -300 |
| Ndufb7 | -319 |
| Dda1 | -591 |
| Jam3 | -924 |
| Rpl21 | -999 |
| Prkaca | -1483 |
| 0610009B22Rik | -1700 |
| Atg2b | -1875 |
| BC049762 | -1972 |
| Scoc | -2669 |
| Morc3 | -2871 |
| Sar1b | -3102 |
| Thyn1 | -3198 |
| Lnx2 | -3264 |
| Gpd2 | -3314 |
| Pgls | -3403 |
| Rab5a | -3537 |
| Clk4 | -3607 |
| Mtif3 | -3958 |
| Pan3 | -4365 |
| Zwint | -4477 |
| Acad8 | -4566 |
| Arhgef11 | -4605 |
| Galnt3 | -4653 |
| Gm10643 | -4724 |
| Vps26b | -4792 |
| Ncapd3 | -4947 |
| Abhd8 | -5140 |
| Mrpl34 | -5689 |
| Gm10644 | -6677 |
| Ocel1 | -6717 |
| Sec24a | -6739 |
| Dnajb1 | -6836 |
| Slc46a3 | -6931 |
| Ttc21b | -6959 |
| Cbr1 | -7053 |
| 2210011C24Rik | -7258 |
motif14.motif.bed_Six4(Homeobox)
| 4 | |
|---|---|
| set | motif14.motif.bed_Six4(Homeobox) |
| setSize | 114 |
| pANOVA | 0.108 |
| s.dist | -0.0871 |
| p.adjustANOVA | 0.307 |
Top enriched genes
| GeneID | Gene Rank |
|---|---|
| Fgf1 | -7869 |
| Nrip1 | -7753 |
| Pdlim5 | -7702 |
| Ppp2r2d | -7590 |
| Snrpd3 | -7537 |
| Tsc22d3 | -7527 |
| Bnip3 | -7509 |
| Adamts2 | -7507 |
| Isy1 | -7483 |
| Zfp354b | -7473 |
| Rpn1 | -7450 |
| C030037D09Rik | -7182 |
| Hsp90b1 | -7149 |
| Rab7 | -7061 |
| Zfp454 | -7057 |
| Prkce | -6989 |
| Pdhb | -6889 |
| Stab2 | -6788 |
| Chchd10 | -6570 |
| Max | -6319 |
Click HERE to show all gene set members
| GeneID | Gene Rank |
|---|---|
| Fgf1 | -7869 |
| Nrip1 | -7753 |
| Pdlim5 | -7702 |
| Ppp2r2d | -7590 |
| Snrpd3 | -7537 |
| Tsc22d3 | -7527 |
| Bnip3 | -7509 |
| Adamts2 | -7507 |
| Isy1 | -7483 |
| Zfp354b | -7473 |
| Rpn1 | -7450 |
| C030037D09Rik | -7182 |
| Hsp90b1 | -7149 |
| Rab7 | -7061 |
| Zfp454 | -7057 |
| Prkce | -6989 |
| Pdhb | -6889 |
| Stab2 | -6788 |
| Chchd10 | -6570 |
| Max | -6319 |
| Sorl1 | -6136 |
| Pwwp2b | -6023 |
| Zfp2 | -5710 |
| Mif | -5513 |
| Mapk1ip1 | -5420 |
| Arhgap26 | -5223 |
| Mid2 | -4886 |
| Fut8 | -4791 |
| Plbd2 | -4438 |
| Vezf1 | -4043 |
| Prps1 | -4013 |
| Rpp14 | -3861 |
| Lrrc27 | -3797 |
| Zfp879 | -3731 |
| Zfp354c | -3671 |
| Twsg1 | -3560 |
| Hdac4 | -3558 |
| Ndufa10 | -3455 |
| Stam | -3434 |
| Maml1 | -3222 |
| Ccdc122 | -2988 |
| Sc5d | -2692 |
| Gm16268 | -2431 |
| Smarcb1 | -2301 |
| Nt5dc3 | -2100 |
| Rufy1 | -2067 |
| Gnpda1 | -2005 |
| Specc1l | -1942 |
| Cnbp | -1910 |
| Gm15893 | -1858 |
| Srsf1 | -1745 |
| Pxk | -1675 |
| Ndufv2 | -1654 |
| Inpp5a | -1513 |
| Bmpr1b | -1497 |
| 1810014B01Rik | -1408 |
| Ndfip1 | -1095 |
| Tbc1d9b | -1085 |
| Msi2 | -953 |
| Vapa | -715 |
| Srbd1 | -559 |
| Rnf14 | -436 |
| Hnrnph1 | -195 |
| Slc39a12 | 97 |
| Mmp11 | 99 |
| Gm5577 | 227 |
| Sdsl | 289 |
| Gtf2b | 376 |
| Fntb | 520 |
| Sec61a1 | 958 |
| Ralbp1 | 1114 |
| Fabp3 | 1214 |
| Mgat4b | 1530 |
| Ppp4r1 | 1816 |
| Abhd6 | 2043 |
| Cabin1 | 2195 |
| Canx | 2201 |
| Tmem232 | 2385 |
| Rab15 | 2639 |
| Tpcn1 | 2764 |
| Sqstm1 | 3601 |
| Tsc22d1 | 3673 |
| Cacnb2 | 3832 |
| Jakmip3 | 3877 |
| Mrps23 | 3974 |
| Gfra1 | 4093 |
| Dmrta2 | 4137 |
| Susd2 | 4258 |
| Dynll2 | 4337 |
| Twist2 | 4423 |
| Cdkn2c | 4463 |
| Gpc6 | 4834 |
| Rbm19 | 4851 |
| Tbcel | 5151 |
| Tecta | 5247 |
| Gstt1 | 5293 |
| Ddx54 | 5666 |
| Spry4 | 5938 |
| Gstt2 | 6093 |
| Timp3 | 6221 |
| Rps19 | 6260 |
| Flnb | 6745 |
| Ggt5 | 6924 |
| Mrc1 | 7047 |
| Rab31 | 7168 |
| Plekhg3 | 7197 |
| Adora2a | 7665 |
| Gbp7 | 8432 |
| Oas1b | 8442 |
| Gbp2 | 8455 |
| Oas3 | 8459 |
| Oas2 | 8500 |
| Gbp5 | 8510 |
| Gbp3 | 8511 |
motif11.motif.bed_Atf1(bZIP)
| 2 | |
|---|---|
| set | motif11.motif.bed_Atf1(bZIP) |
| setSize | 22 |
| pANOVA | 0.487 |
| s.dist | 0.0856 |
| p.adjustANOVA | 0.552 |
Top enriched genes
| GeneID | Gene Rank |
|---|---|
| Socs1 | 8518 |
| Litaf | 8272 |
| Chl1 | 7175 |
| Pak3 | 6646 |
| Dpy19l1 | 6161 |
| Capn6 | 5034 |
| 4930509G22Rik | 4864 |
| Chrdl1 | 3893 |
| Zc3h7a | 3593 |
| Snn | 2365 |
| Snx29 | 2212 |
| Tpm3 | 351 |
| 1110002L01Rik | -457 |
| Dtnb | -785 |
| Kif3c | -1966 |
| Rsl1d1 | -3419 |
| Gspt1 | -3570 |
| Asxl2 | -4385 |
| Rab10 | -4669 |
| Dexi | -5620 |
Click HERE to show all gene set members
| GeneID | Gene Rank |
|---|---|
| Socs1 | 8518 |
| Litaf | 8272 |
| Chl1 | 7175 |
| Pak3 | 6646 |
| Dpy19l1 | 6161 |
| Capn6 | 5034 |
| 4930509G22Rik | 4864 |
| Chrdl1 | 3893 |
| Zc3h7a | 3593 |
| Snn | 2365 |
| Snx29 | 2212 |
| Tpm3 | 351 |
| 1110002L01Rik | -457 |
| Dtnb | -785 |
| Kif3c | -1966 |
| Rsl1d1 | -3419 |
| Gspt1 | -3570 |
| Asxl2 | -4385 |
| Rab10 | -4669 |
| Dexi | -5620 |
| 2610020C07Rik | -5630 |
| Txndc11 | -6367 |
motif10.motif.bed_Mef2a(MADS)
| 1 | |
|---|---|
| set | motif10.motif.bed_Mef2a(MADS) |
| setSize | 51 |
| pANOVA | 0.361 |
| s.dist | 0.0739 |
| p.adjustANOVA | 0.512 |
Top enriched genes
| GeneID | Gene Rank |
|---|---|
| AB124611 | 8213 |
| S1pr2 | 8016 |
| Cdc7 | 7456 |
| Chl1 | 7175 |
| Pak3 | 6646 |
| Zbtb7c | 6417 |
| Dpy19l1 | 6161 |
| Kri1 | 6112 |
| Qtrt1 | 5135 |
| Capn6 | 5034 |
| Gm10801 | 4774 |
| Tyk2 | 4736 |
| Slc44a2 | 4542 |
| Rassf3 | 4476 |
| Cyp2j9 | 4307 |
| Srgap1 | 4197 |
| Gm10800 | 4026 |
| Chrdl1 | 3893 |
| Jakmip3 | 3877 |
| Rap2a | 3794 |
Click HERE to show all gene set members
| GeneID | Gene Rank |
|---|---|
| AB124611 | 8213 |
| S1pr2 | 8016 |
| Cdc7 | 7456 |
| Chl1 | 7175 |
| Pak3 | 6646 |
| Zbtb7c | 6417 |
| Dpy19l1 | 6161 |
| Kri1 | 6112 |
| Qtrt1 | 5135 |
| Capn6 | 5034 |
| Gm10801 | 4774 |
| Tyk2 | 4736 |
| Slc44a2 | 4542 |
| Rassf3 | 4476 |
| Cyp2j9 | 4307 |
| Srgap1 | 4197 |
| Gm10800 | 4026 |
| Chrdl1 | 3893 |
| Jakmip3 | 3877 |
| Rap2a | 3794 |
| Smad7 | 3695 |
| Smarca4 | 3588 |
| Cdkn2d | 2638 |
| Tbk1 | 2550 |
| BC048403 | 2465 |
| Carm1 | 2356 |
| Gm20544 | 2282 |
| Ilf3 | 2169 |
| Keap1 | 1254 |
| Dnm2 | 365 |
| Yipf2 | -220 |
| Gm20519 | -397 |
| Gns | -482 |
| Cdc37 | -1482 |
| Inpp5a | -1513 |
| Tgfbr3 | -1600 |
| Brdt | -2040 |
| Xpot | -2331 |
| Ctif | -2440 |
| Lrrc27 | -3797 |
| 1700084C06Rik | -4248 |
| Atg4d | -5251 |
| Pde4a | -5350 |
| Mapk1ip1 | -5420 |
| Pwwp2b | -6023 |
| Tmed1 | -6042 |
| Cyp2j6 | -6377 |
| Bnip3 | -7509 |
| Ppp2r2d | -7590 |
| Mbnl2 | -7840 |
| Sgk1 | -7848 |
motif19.motif.bed_TGA1(bZIP)
| 6 | |
|---|---|
| set | motif19.motif.bed_TGA1(bZIP) |
| setSize | 66 |
| pANOVA | 0.438 |
| s.dist | -0.0553 |
| p.adjustANOVA | 0.537 |
Top enriched genes
| GeneID | Gene Rank |
|---|---|
| St3gal5 | -7383 |
| Krcc1 | -6529 |
| Hoxa13 | -6426 |
| Reep1 | -6197 |
| Hoxa2 | -5923 |
| Nadk | -5907 |
| Trim23 | -5677 |
| Mecr | -5532 |
| Snhg12 | -5514 |
| Slc35e2 | -5303 |
| Taf12 | -5082 |
| Srek1ip1 | -4933 |
| Ppwd1 | -4887 |
| 5830444B04Rik | -4774 |
| Mrpl35 | -4628 |
| Gm16023 | -4277 |
| Immt | -4126 |
| Ptcd3 | -3545 |
| Aurkaip1 | -2930 |
| Rmnd5a | -2767 |
Click HERE to show all gene set members
| GeneID | Gene Rank |
|---|---|
| St3gal5 | -7383 |
| Krcc1 | -6529 |
| Hoxa13 | -6426 |
| Reep1 | -6197 |
| Hoxa2 | -5923 |
| Nadk | -5907 |
| Trim23 | -5677 |
| Mecr | -5532 |
| Snhg12 | -5514 |
| Slc35e2 | -5303 |
| Taf12 | -5082 |
| Srek1ip1 | -4933 |
| Ppwd1 | -4887 |
| 5830444B04Rik | -4774 |
| Mrpl35 | -4628 |
| Gm16023 | -4277 |
| Immt | -4126 |
| Ptcd3 | -3545 |
| Aurkaip1 | -2930 |
| Rmnd5a | -2767 |
| Hibadh | -2756 |
| Eya3 | -2525 |
| Gm10300 | -2514 |
| Hoxa7 | -2382 |
| Kdm3a | -2267 |
| Hoxa11 | -1878 |
| Mxra8 | -1776 |
| Ythdf2 | -1367 |
| Ccnl2 | -1109 |
| Adamts6 | -930 |
| Ssu72 | -788 |
| Dnajc8 | -631 |
| Chmp3 | -422 |
| Hoxa10 | 345 |
| Rnf103 | 373 |
| Prkcz | 477 |
| Mrpl20 | 552 |
| Polr1a | 793 |
| Med18 | 1211 |
| Phactr4 | 1457 |
| Dvl1 | 1480 |
| Mib2 | 1702 |
| Srsf4 | 1725 |
| Gm17300 | 1762 |
| Rer1 | 1769 |
| Rpa2 | 1968 |
| Gnb1 | 2048 |
| Ski | 3080 |
| Sesn2 | 3418 |
| Rps15a | 3605 |
| Vwa1 | 4090 |
| Rcc1 | 4212 |
| Ptpru | 4313 |
| Gm10563 | 4384 |
| Hoxa9 | 4502 |
| Trnau1ap | 4605 |
| Mmp23 | 4977 |
| Gmeb1 | 4997 |
| Cenpk | 5075 |
| Tmem88b | 5099 |
| Smyd1 | 5380 |
| Gm12992 | 5563 |
| Oprd1 | 6761 |
| Atpif1 | 6950 |
| Skap2 | 7471 |
| Cd8a | 7985 |
motif23.motif.bed_bZIP50(bZIP)
| 10 | |
|---|---|
| set | motif23.motif.bed_bZIP50(bZIP) |
| setSize | 70 |
| pANOVA | 0.443 |
| s.dist | -0.0531 |
| p.adjustANOVA | 0.537 |
Top enriched genes
| GeneID | Gene Rank |
|---|---|
| Gm15337 | -7904 |
| Fgf1 | -7869 |
| Nr3c1 | -7849 |
| Tmem52 | -7766 |
| Zcchc2 | -7472 |
| Fbxw7 | -7270 |
| Lmbrd1 | -6875 |
| B3galt6 | -6828 |
| Max | -6319 |
| Nadk | -5907 |
| Ehd3 | -5785 |
| Pign | -5572 |
| Slc35e2 | -5303 |
| Fut8 | -4791 |
| 5830444B04Rik | -4774 |
| Memo1 | -4465 |
| Gm15336 | -4354 |
| Gm16023 | -4277 |
| Atad3a | -4122 |
| Tas1r3 | -3259 |
Click HERE to show all gene set members
| GeneID | Gene Rank |
|---|---|
| Gm15337 | -7904 |
| Fgf1 | -7869 |
| Nr3c1 | -7849 |
| Tmem52 | -7766 |
| Zcchc2 | -7472 |
| Fbxw7 | -7270 |
| Lmbrd1 | -6875 |
| B3galt6 | -6828 |
| Max | -6319 |
| Nadk | -5907 |
| Ehd3 | -5785 |
| Pign | -5572 |
| Slc35e2 | -5303 |
| Fut8 | -4791 |
| 5830444B04Rik | -4774 |
| Memo1 | -4465 |
| Gm15336 | -4354 |
| Gm16023 | -4277 |
| Atad3a | -4122 |
| Tas1r3 | -3259 |
| Aurkaip1 | -2930 |
| Yipf4 | -2766 |
| Kcnb1 | -2412 |
| Cse1l | -2306 |
| Mxra8 | -1776 |
| Spast | -1392 |
| 1110018N20Rik | -1262 |
| Ccnl2 | -1109 |
| Btg3 | -983 |
| Cxadr | -890 |
| Pusl1 | -807 |
| Phlpp1 | -791 |
| Ssu72 | -788 |
| Chodl | -763 |
| Ppie | -721 |
| Arfgef2 | -574 |
| Sdf4 | -328 |
| Pabpc4 | -317 |
| Nt5c1a | 106 |
| Fntb | 520 |
| Mrpl20 | 552 |
| Dvl1 | 1480 |
| Mib2 | 1702 |
| Rer1 | 1769 |
| Gnb1 | 2048 |
| Rab15 | 2639 |
| Gm10925 | 2878 |
| Stau1 | 2936 |
| Slc9a8 | 2984 |
| Ski | 3080 |
| Ube2j2 | 3163 |
| Dpy30 | 3302 |
| D16Ertd472e | 3815 |
| B4galt5 | 3890 |
| Znfx1 | 3919 |
| Rnf114 | 4088 |
| Vwa1 | 4090 |
| Ptgis | 4618 |
| Mmp23 | 4977 |
| Ddx27 | 5197 |
| Cdk11b | 5337 |
| Acap3 | 5876 |
| Col19a1 | 5889 |
| Snai1 | 6027 |
| Heyl | 6090 |
| Plekhg3 | 7197 |
| Prex1 | 7451 |
| Tnfrsf11a | 8341 |
| Xdh | 8353 |
| Galnt14 | 8482 |
motif2.motif.bed_PGR(NR)
| 11 | |
|---|---|
| set | motif2.motif.bed_PGR(NR) |
| setSize | 186 |
| pANOVA | 0.332 |
| s.dist | 0.0413 |
| p.adjustANOVA | 0.512 |
Top enriched genes
| GeneID | Gene Rank |
|---|---|
| Icam1 | 8422 |
| AB124611 | 8213 |
| Ptprj | 8187 |
| Plcg2 | 8076 |
| S1pr2 | 8016 |
| Hmga2 | 7923 |
| Crlf2 | 7868 |
| Bub1b | 7776 |
| Thbs1 | 7600 |
| Gpr176 | 7491 |
| Lmo2 | 7432 |
| Chaf1b | 7216 |
| Edem1 | 7208 |
| Rab31 | 7168 |
| Tiam2 | 7160 |
| Gm12610 | 6978 |
| Ephb3 | 6921 |
| Krt7 | 6899 |
| Gm13986 | 6867 |
| Acvrl1 | 6799 |
Click HERE to show all gene set members
| GeneID | Gene Rank |
|---|---|
| Icam1 | 8422 |
| AB124611 | 8213 |
| Ptprj | 8187 |
| Plcg2 | 8076 |
| S1pr2 | 8016 |
| Hmga2 | 7923 |
| Crlf2 | 7868 |
| Bub1b | 7776 |
| Thbs1 | 7600 |
| Gpr176 | 7491 |
| Lmo2 | 7432 |
| Chaf1b | 7216 |
| Edem1 | 7208 |
| Rab31 | 7168 |
| Tiam2 | 7160 |
| Gm12610 | 6978 |
| Ephb3 | 6921 |
| Krt7 | 6899 |
| Gm13986 | 6867 |
| Acvrl1 | 6799 |
| Tubb6 | 6754 |
| Mppe1 | 6742 |
| Mylip | 6618 |
| Gm14548 | 6400 |
| Krt80 | 6376 |
| Impa2 | 6238 |
| Kri1 | 6112 |
| Pkd1l2 | 6063 |
| Def6 | 5951 |
| Mybpc3 | 5693 |
| Bdh2 | 5324 |
| 4632428C04Rik | 5317 |
| Cacng7 | 5297 |
| Dna2 | 5263 |
| Nr4a1 | 5158 |
| Qtrt1 | 5135 |
| Spp1 | 5109 |
| Sdr42e1 | 4996 |
| Tyk2 | 4736 |
| Gan | 4732 |
| Slc44a2 | 4542 |
| Setd4 | 4528 |
| Rassf3 | 4476 |
| Cdkn2c | 4463 |
| Sh3bgrl2 | 4429 |
| Rps9 | 4391 |
| Fance | 4301 |
| Tead3 | 4278 |
| Hes1 | 4214 |
| Srgap1 | 4197 |
| Dmrta2 | 4137 |
| Hnrnph3 | 4030 |
| Rpl10a | 3972 |
| Bmf | 3930 |
| Tfpt | 3796 |
| Cnot3 | 3766 |
| Arl8b | 3688 |
| Smarca4 | 3588 |
| Mphosph6 | 3393 |
| Ap2m1 | 3370 |
| Pacsin3 | 3360 |
| Srpk1 | 3349 |
| Celf1 | 3296 |
| Abcf3 | 3199 |
| Mtap | 3138 |
| B430212C06Rik | 3089 |
| Nat10 | 3056 |
| Klhl8 | 2677 |
| Cdkn2d | 2638 |
| Cdkn2b | 2562 |
| Gm17055 | 2560 |
| Tbk1 | 2550 |
| Prpf31 | 2541 |
| BC048403 | 2465 |
| Tmem232 | 2385 |
| Carm1 | 2356 |
| Tmc4 | 2347 |
| Leng1 | 2216 |
| Ilf3 | 2169 |
| Tomm7 | 2150 |
| 6030408B16Rik | 2129 |
| A930018P22Rik | 1899 |
| Grasp | 1845 |
| Ppp4r1 | 1816 |
| Cenpn | 1802 |
| Gnal | 1463 |
| Dtnbp1 | 1314 |
| Hsd17b11 | 1313 |
| Zfp523 | 1275 |
| Keap1 | 1254 |
| Ralbp1 | 1114 |
| Agbl2 | 1080 |
| Pisd | 969 |
| Lemd3 | 954 |
| Mrpl4 | 943 |
| Caprin1 | 766 |
| Srp14 | 464 |
| Aff1 | 390 |
| Dnm2 | 365 |
| Ddx21 | 239 |
| Gmpr | 237 |
| Sumf1 | 148 |
| Slc25a16 | 3 |
| Pkd2 | -46 |
| Rpl30 | -136 |
| Vps8 | -190 |
| Yipf2 | -220 |
| D930016D06Rik | -267 |
| Manba | -280 |
| Gm20519 | -397 |
| Ivd | -435 |
| Nfkb1 | -466 |
| Gns | -482 |
| Mapk14 | -622 |
| Alg3 | -697 |
| Vapa | -715 |
| Brpf3 | -749 |
| Fnbp4 | -909 |
| Usp27x | -1309 |
| Gm15927 | -1372 |
| Chst14 | -1398 |
| Cdc37 | -1482 |
| Ndufv2 | -1654 |
| Mboat7 | -1663 |
| Nudt9 | -1680 |
| Ssb | -1695 |
| Cd59a | -1838 |
| Plp2 | -1843 |
| Tsen34 | -1850 |
| Srpk2 | -1940 |
| Ptpmt1 | -2099 |
| Xpot | -2331 |
| Ubr3 | -2393 |
| Gcsh | -2458 |
| Pus7 | -2511 |
| Eif2ak4 | -2659 |
| 4930522L14Rik | -2680 |
| Morc3 | -2871 |
| Ppard | -2973 |
| Oscar | -3052 |
| Scaf8 | -3203 |
| Slc39a8 | -3336 |
| Atmin | -3414 |
| Twsg1 | -3560 |
| Ccar1 | -3622 |
| Afg3l2 | -3703 |
| Nup160 | -3894 |
| Gm15446 | -4107 |
| Herc4 | -4190 |
| 1700084C06Rik | -4248 |
| Ndufs3 | -4432 |
| Ndufa3 | -4519 |
| Cisd2 | -4677 |
| Rufy2 | -4700 |
| Mettl5 | -4756 |
| Fbxo3 | -4848 |
| Mypn | -4967 |
| 5031425E22Rik | -4986 |
| Cd59b | -5003 |
| Atg4d | -5251 |
| Pde4a | -5350 |
| Ube2d3 | -5385 |
| Tfb1m | -5648 |
| Sparcl1 | -5680 |
| Acvr1b | -5770 |
| Gm17661 | -5790 |
| Pbld1 | -5874 |
| C1qtnf4 | -6009 |
| Tmed1 | -6042 |
| Bhlhe40 | -6098 |
| Cidea | -6116 |
| Phospho2 | -6123 |
| Tet1 | -6217 |
| Amot | -6356 |
| Ddx50 | -6358 |
| Gm10912 | -6394 |
| Mtch2 | -6618 |
| Ppig | -6670 |
| BC005561 | -6680 |
| Kbtbd4 | -6738 |
| Cbr1 | -7053 |
| Msrb3 | -7191 |
| 5430403G16Rik | -7243 |
| Fkbp5 | -7491 |
| 0610040F04Rik | -7644 |
| D430041D05Rik | -7701 |
motif20.motif.bed_Atf2(bZIP)
| 8 | |
|---|---|
| set | motif20.motif.bed_Atf2(bZIP) |
| setSize | 337 |
| pANOVA | 0.308 |
| s.dist | -0.0324 |
| p.adjustANOVA | 0.512 |
Top enriched genes
| GeneID | Gene Rank |
|---|---|
| Fgf1 | -7869 |
| Ell2 | -7839 |
| Stbd1 | -7782 |
| Tmem52 | -7766 |
| Retsat | -7764 |
| Nrip1 | -7753 |
| Crim1 | -7734 |
| Pdlim5 | -7702 |
| D430041D05Rik | -7701 |
| Ppp2r2d | -7590 |
| Bnip3 | -7509 |
| Adamts2 | -7507 |
| Zfp354b | -7473 |
| Art3 | -7412 |
| Rfesd | -7399 |
| St3gal5 | -7383 |
| 1300017J02Rik | -7344 |
| Hyal1 | -7306 |
| Gm9917 | -7292 |
| Arrdc2 | -7211 |
Click HERE to show all gene set members
| GeneID | Gene Rank |
|---|---|
| Fgf1 | -7869 |
| Ell2 | -7839 |
| Stbd1 | -7782 |
| Tmem52 | -7766 |
| Retsat | -7764 |
| Nrip1 | -7753 |
| Crim1 | -7734 |
| Pdlim5 | -7702 |
| D430041D05Rik | -7701 |
| Ppp2r2d | -7590 |
| Bnip3 | -7509 |
| Adamts2 | -7507 |
| Zfp354b | -7473 |
| Art3 | -7412 |
| Rfesd | -7399 |
| St3gal5 | -7383 |
| 1300017J02Rik | -7344 |
| Hyal1 | -7306 |
| Gm9917 | -7292 |
| Arrdc2 | -7211 |
| Ghr | -7193 |
| Glul | -7169 |
| Hsp90b1 | -7149 |
| Egln3 | -7060 |
| Oxct1 | -7058 |
| Zfp454 | -7057 |
| Scarb2 | -7035 |
| Atoh8 | -6963 |
| 5830418P13Rik | -6953 |
| B3galt6 | -6828 |
| Gm15564 | -6823 |
| Stab2 | -6788 |
| Tcp11l2 | -6786 |
| Srprb | -6712 |
| Gpc1 | -6707 |
| Tmem115 | -6705 |
| Yipf6 | -6543 |
| Trim67 | -6542 |
| Ccdc152 | -6535 |
| Klf6 | -6527 |
| Mat2a | -6519 |
| Gm20536 | -6458 |
| Cdv3 | -6443 |
| Gm10912 | -6394 |
| Cyp2j6 | -6377 |
| Hemk1 | -6339 |
| Max | -6319 |
| Mpv17l2 | -6282 |
| Ier3 | -6278 |
| Kpna1 | -6271 |
| Trdn | -6270 |
| Nuak1 | -6225 |
| AW549877 | -6216 |
| Reep1 | -6197 |
| Med21 | -6181 |
| Wdr5b | -6068 |
| Pwwp2b | -6023 |
| Nadk | -5907 |
| Ttc13 | -5902 |
| Cacna2d2 | -5864 |
| Iars | -5737 |
| Zfp2 | -5710 |
| Sparcl1 | -5680 |
| Shroom3 | -5611 |
| Mavs | -5467 |
| Rab3a | -5439 |
| Mapk1ip1 | -5420 |
| Hyal2 | -5387 |
| Slc35e2 | -5303 |
| Arhgap26 | -5223 |
| Fam162a | -5135 |
| Mysm1 | -5018 |
| Cd59b | -5003 |
| Mrps35 | -4850 |
| Fbxo3 | -4848 |
| Fut8 | -4791 |
| 5830444B04Rik | -4774 |
| Mapkapk3 | -4731 |
| Wnk2 | -4718 |
| Arhgef11 | -4605 |
| Pnkd | -4494 |
| Nprl2 | -4447 |
| Plbd2 | -4438 |
| Tpt1 | -4379 |
| Gm16023 | -4277 |
| Gm17040 | -4244 |
| Jun | -4145 |
| Immt | -4126 |
| Atad3a | -4122 |
| Rbm5 | -4114 |
| Glrx | -4069 |
| 2310015A10Rik | -4000 |
| Tgoln1 | -3929 |
| Hyal3 | -3803 |
| Lrrc27 | -3797 |
| Ttc37 | -3733 |
| Zfp879 | -3731 |
| Stk38l | -3694 |
| Zfp354c | -3671 |
| Hdac4 | -3558 |
| Ptcd3 | -3545 |
| Ndufa10 | -3455 |
| Stam | -3434 |
| Rgsl1 | -3405 |
| Ddr1 | -3371 |
| Tas1r3 | -3259 |
| Maml1 | -3222 |
| Vamp5 | -3116 |
| Ccdc58 | -2978 |
| Aurkaip1 | -2930 |
| Polr3b | -2896 |
| Ccni | -2877 |
| Sec22a | -2790 |
| Slc25a30 | -2760 |
| Nkain2 | -2754 |
| Cish | -2749 |
| Rpl36 | -2724 |
| Pde4c | -2654 |
| Fez2 | -2642 |
| Rab6b | -2614 |
| Zmynd10 | -2521 |
| Gm16268 | -2431 |
| Arntl2 | -2414 |
| Ogn | -2395 |
| 0610030E20Rik | -2346 |
| Stard8 | -2260 |
| Cyb561d2 | -2214 |
| Nol8 | -2144 |
| Gm10654 | -2118 |
| Nt5dc3 | -2100 |
| Rufy1 | -2067 |
| Gnpda1 | -2005 |
| 2310061I04Rik | -1997 |
| Cog3 | -1959 |
| Pik3r2 | -1919 |
| Cd59a | -1838 |
| Mxra8 | -1776 |
| Ggcx | -1713 |
| Nudt9 | -1680 |
| Nae1 | -1577 |
| Inpp5a | -1513 |
| Bmpr1b | -1497 |
| Appl2 | -1436 |
| 1810014B01Rik | -1408 |
| Klf10 | -1395 |
| Snrpb2 | -1298 |
| Ccnl2 | -1109 |
| Ndfip1 | -1095 |
| Tbc1d9b | -1085 |
| Kcnn1 | -1061 |
| Rpl21 | -999 |
| Snx13 | -831 |
| Pusl1 | -807 |
| Ssu72 | -788 |
| Ell | -738 |
| Ppie | -721 |
| Pgpep1 | -611 |
| Zfp36l1 | -450 |
| Rnf14 | -436 |
| Fam120a | -411 |
| Tmem161a | -405 |
| Usp39 | -393 |
| Arv1 | -379 |
| Hint1 | -340 |
| Sdf4 | -328 |
| Pabpc4 | -317 |
| Hnrnph1 | -195 |
| Fbxo4 | -57 |
| Rassf1 | 41 |
| Car7 | 74 |
| Slc39a12 | 97 |
| Nt5c1a | 106 |
| Dirc2 | 144 |
| Tmem150a | 245 |
| Ubr5 | 256 |
| Sdsl | 289 |
| Gtf2b | 376 |
| Azin1 | 391 |
| Gpx3 | 425 |
| Fntb | 520 |
| Cdh5 | 549 |
| Mrpl20 | 552 |
| Rpl18a | 687 |
| Eapp | 703 |
| Caprin1 | 766 |
| Polr1a | 793 |
| Tusc2 | 796 |
| Dync1li2 | 873 |
| Gm14233 | 891 |
| Gtf2h4 | 1069 |
| Ctdsp1 | 1083 |
| Kif16b | 1124 |
| Hspbap1 | 1162 |
| Flot1 | 1164 |
| Fabp3 | 1214 |
| Hsd17b11 | 1313 |
| Bicd2 | 1358 |
| Sept11 | 1470 |
| Dvl1 | 1480 |
| Mgat4b | 1530 |
| Ccdc124 | 1620 |
| Cog2 | 1679 |
| Mib2 | 1702 |
| Rer1 | 1769 |
| A930018P22Rik | 1899 |
| Aspn | 1928 |
| Slc38a3 | 1985 |
| Gnb1 | 2048 |
| Klhl26 | 2180 |
| Canx | 2201 |
| Pgbd5 | 2301 |
| 2310022B05Rik | 2406 |
| Rep15 | 2548 |
| Cope | 2549 |
| Atp6v1c1 | 2602 |
| Rab15 | 2639 |
| Klhl8 | 2677 |
| Agt | 2763 |
| Tpcn1 | 2764 |
| 1700037H04Rik | 2774 |
| Slc36a1 | 2799 |
| Tns1 | 2906 |
| Nufip1 | 2915 |
| Ccng2 | 2967 |
| Ippk | 3006 |
| Ifrd2 | 3013 |
| Ddx49 | 3020 |
| Nat10 | 3056 |
| Ski | 3080 |
| Ube2j2 | 3163 |
| Ecm2 | 3364 |
| Sqstm1 | 3601 |
| Upf1 | 3703 |
| Cacnb2 | 3832 |
| Rhobtb3 | 3868 |
| Jakmip3 | 3877 |
| Dock3 | 3892 |
| Phf2 | 3899 |
| Gm11175 | 3961 |
| Vwa1 | 4090 |
| Efnb1 | 4152 |
| Slc36a2 | 4161 |
| Tmbim1 | 4244 |
| Cyp2j9 | 4307 |
| Jund | 4326 |
| Vars2 | 4339 |
| Topbp1 | 4383 |
| Twist2 | 4423 |
| Anxa6 | 4425 |
| Xylb | 4451 |
| Etv3 | 4485 |
| Cmtm4 | 4491 |
| Acaa1a | 4521 |
| Slc5a5 | 4532 |
| Exog | 4559 |
| Aamp | 4626 |
| Ccdc69 | 4633 |
| Fkbp8 | 4654 |
| Rnf181 | 4689 |
| Fcrls | 4722 |
| Crtc1 | 4740 |
| Cd1d1 | 4755 |
| Sema3b | 4799 |
| G3bp1 | 4806 |
| Sema3f | 4837 |
| Rbm19 | 4851 |
| Lsm4 | 4920 |
| Cklf | 4967 |
| Mmp23 | 4977 |
| Spp1 | 5109 |
| Arpc2 | 5119 |
| Pdia5 | 5163 |
| Pdp2 | 5214 |
| Cdk11b | 5337 |
| Tk2 | 5369 |
| Tmem108 | 5627 |
| Isyna1 | 5631 |
| Actn1 | 5657 |
| Ddx54 | 5666 |
| Nrm | 5685 |
| Spry1 | 5692 |
| Mdc1 | 5701 |
| Atox1 | 5756 |
| Acap3 | 5876 |
| Acvr2b | 5900 |
| Spry4 | 5938 |
| Fzd6 | 5947 |
| Mast3 | 5980 |
| Rnf24 | 5995 |
| Gm2a | 6024 |
| Heyl | 6090 |
| Timp3 | 6221 |
| Sparc | 6233 |
| Cenpp | 6254 |
| Txn1 | 6285 |
| Capg | 6403 |
| Svep1 | 6414 |
| Adra1d | 6469 |
| Smox | 6473 |
| Vamp8 | 6635 |
| Ppfibp1 | 6690 |
| Ckap4 | 6772 |
| Fat2 | 6788 |
| Kirrel | 6864 |
| Ninj1 | 7028 |
| Tubb5 | 7032 |
| Fgd3 | 7038 |
| Mrc1 | 7047 |
| Rgs16 | 7136 |
| Cdc25b | 7165 |
| Ifi30 | 7183 |
| Plekhg3 | 7197 |
| Rnasel | 7384 |
| Spef1 | 7400 |
| Lmo2 | 7432 |
| Ahr | 7620 |
| Parp9 | 7628 |
| Naaa | 7677 |
| Cmtm3 | 7719 |
| Gnai2 | 7725 |
| Scn5a | 7808 |
| Pear1 | 7828 |
| Ssbp4 | 7837 |
| Susd3 | 7902 |
| Dtx3l | 8267 |
| Il12rb1 | 8298 |
| Rrad | 8339 |
| Lrrc25 | 8428 |
| Gbp7 | 8432 |
| Oas1b | 8442 |
| Gbp2 | 8455 |
| Oas3 | 8459 |
| Oas2 | 8500 |
| Parp14 | 8506 |
| Gbp5 | 8510 |
| Gbp3 | 8511 |
| Slc11a1 | 8515 |
motif6.motif.bed_ARE(NR)
| 15 | |
|---|---|
| set | motif6.motif.bed_ARE(NR) |
| setSize | 73 |
| pANOVA | 0.778 |
| s.dist | 0.0191 |
| p.adjustANOVA | 0.827 |
Top enriched genes
| GeneID | Gene Rank |
|---|---|
| Socs1 | 8518 |
| Gbp3 | 8511 |
| Gbp5 | 8510 |
| Gbp2 | 8455 |
| Gbp7 | 8432 |
| Clec12a | 8399 |
| Litaf | 8272 |
| Clec9a | 7916 |
| BC035044 | 7881 |
| Klrk1 | 7870 |
| Chl1 | 7175 |
| Gm15987 | 7171 |
| St3gal4 | 6688 |
| Pak3 | 6646 |
| Cks2 | 6608 |
| Clec2i | 6501 |
| Clec7a | 6291 |
| Dpy19l1 | 6161 |
| Sema4d | 5969 |
| Cdon | 5397 |
Click HERE to show all gene set members
| GeneID | Gene Rank |
|---|---|
| Socs1 | 8518 |
| Gbp3 | 8511 |
| Gbp5 | 8510 |
| Gbp2 | 8455 |
| Gbp7 | 8432 |
| Clec12a | 8399 |
| Litaf | 8272 |
| Clec9a | 7916 |
| BC035044 | 7881 |
| Klrk1 | 7870 |
| Chl1 | 7175 |
| Gm15987 | 7171 |
| St3gal4 | 6688 |
| Pak3 | 6646 |
| Cks2 | 6608 |
| Clec2i | 6501 |
| Clec7a | 6291 |
| Dpy19l1 | 6161 |
| Sema4d | 5969 |
| Cdon | 5397 |
| Clec1a | 5192 |
| Capn6 | 5034 |
| 4930509G22Rik | 4864 |
| Gm10801 | 4774 |
| Secisbp2 | 4568 |
| Gm10800 | 4026 |
| Chrdl1 | 3893 |
| Sqstm1 | 3601 |
| Zc3h7a | 3593 |
| Snn | 2365 |
| Snx29 | 2212 |
| Canx | 2201 |
| Mgat4b | 1530 |
| Pate2 | 1207 |
| Gtf2b | 376 |
| Rpusd4 | 195 |
| Hnrnph1 | -195 |
| 1110002L01Rik | -457 |
| Dtnb | -785 |
| Gadd45g | -919 |
| Tbc1d9b | -1085 |
| Bmpr1b | -1497 |
| Kif3c | -1966 |
| Rufy1 | -2067 |
| 2310001H17Rik | -2265 |
| Gabarapl1 | -3019 |
| Fam172a | -3051 |
| Maml1 | -3222 |
| Rsl1d1 | -3419 |
| 4930581F22Rik | -3519 |
| Gspt1 | -3570 |
| Zfp354c | -3671 |
| Zfp879 | -3731 |
| Hyls1 | -4366 |
| Asxl2 | -4385 |
| Rab10 | -4669 |
| Fam118b | -5016 |
| Dexi | -5620 |
| 2610020C07Rik | -5630 |
| Zfp2 | -5710 |
| Dcps | -5773 |
| Clec2e | -6031 |
| Foxred1 | -6119 |
| 2210408I21Rik | -6140 |
| Txndc11 | -6367 |
| Pus3 | -6908 |
| Zfp454 | -7057 |
| Srpr | -7080 |
| Zfp354b | -7473 |
| Adamts2 | -7507 |
| Clec2d | -7559 |
| Tirap | -7629 |
| Pdlim5 | -7702 |
motif7.motif.bed_NF1-halfsite(CTF)
| 16 | |
|---|---|
| set | motif7.motif.bed_NF1-halfsite(CTF) |
| setSize | 537 |
| pANOVA | 0.926 |
| s.dist | -0.00236 |
| p.adjustANOVA | 0.926 |
Top enriched genes
| GeneID | Gene Rank |
|---|---|
| Htra1 | -7906 |
| Sgk1 | -7848 |
| Gm5420 | -7847 |
| Tgfb2 | -7845 |
| Mbnl2 | -7840 |
| Cntfr | -7833 |
| Slc2a3 | -7813 |
| Stbd1 | -7782 |
| Padi2 | -7760 |
| Nrip1 | -7753 |
| Crim1 | -7734 |
| Rock2 | -7709 |
| AI464131 | -7651 |
| Lyplal1 | -7648 |
| Lifr | -7645 |
| Sigmar1 | -7592 |
| Ppp2r2d | -7590 |
| Clec2d | -7559 |
| Snrpd3 | -7537 |
| Abi2 | -7514 |
Click HERE to show all gene set members
| GeneID | Gene Rank |
|---|---|
| Htra1 | -7906 |
| Sgk1 | -7848 |
| Gm5420 | -7847 |
| Tgfb2 | -7845 |
| Mbnl2 | -7840 |
| Cntfr | -7833 |
| Slc2a3 | -7813 |
| Stbd1 | -7782 |
| Padi2 | -7760 |
| Nrip1 | -7753 |
| Crim1 | -7734 |
| Rock2 | -7709 |
| AI464131 | -7651 |
| Lyplal1 | -7648 |
| Lifr | -7645 |
| Sigmar1 | -7592 |
| Ppp2r2d | -7590 |
| Clec2d | -7559 |
| Snrpd3 | -7537 |
| Abi2 | -7514 |
| Bnip3 | -7509 |
| Fkbp5 | -7491 |
| Zcchc2 | -7472 |
| Art3 | -7412 |
| Akr1e1 | -7400 |
| Cachd1 | -7386 |
| St3gal5 | -7383 |
| Man2a1 | -7350 |
| Fbxw7 | -7270 |
| Map2k6 | -7222 |
| Lpp | -7207 |
| Egflam | -7205 |
| Ghr | -7193 |
| C030037D09Rik | -7182 |
| Glul | -7169 |
| Hsp90b1 | -7149 |
| Pm20d1 | -7109 |
| Oxct1 | -7058 |
| Cbr1 | -7053 |
| Scarb2 | -7035 |
| Smyd2 | -7011 |
| Prkce | -6989 |
| Atoh8 | -6963 |
| Gm10600 | -6933 |
| Pdhb | -6889 |
| E2f6 | -6868 |
| Rps6ka5 | -6865 |
| Enho | -6847 |
| Gm15564 | -6823 |
| Abca5 | -6815 |
| Arl15 | -6794 |
| Stab2 | -6788 |
| Tcp11l2 | -6786 |
| Hps4 | -6730 |
| Gpc1 | -6707 |
| Lrrc14b | -6697 |
| Creg1 | -6687 |
| B230354K17Rik | -6653 |
| Chchd10 | -6570 |
| Homer1 | -6561 |
| Tmed9 | -6547 |
| Pde4d | -6546 |
| Yipf6 | -6543 |
| Ccdc152 | -6535 |
| Krcc1 | -6529 |
| Sdha | -6526 |
| Txndc11 | -6367 |
| Ccl27a | -6362 |
| Grb10 | -6347 |
| Max | -6319 |
| Mpzl1 | -6281 |
| Kpna1 | -6271 |
| Trdn | -6270 |
| Tbc1d1 | -6252 |
| Tmprss5 | -6229 |
| Gm5617 | -6228 |
| Nuak1 | -6225 |
| AW549877 | -6216 |
| Zbtb16 | -6213 |
| Reep1 | -6197 |
| Med21 | -6181 |
| Slc38a6 | -6151 |
| Cops2 | -6110 |
| Bhlhe40 | -6098 |
| Asf1a | -6095 |
| Wdr5b | -6068 |
| Clec2e | -6031 |
| Pwwp2b | -6023 |
| Trmt5 | -6004 |
| Bbx | -5935 |
| B230219D22Rik | -5932 |
| Nadk | -5907 |
| Fam13c | -5865 |
| Srrd | -5843 |
| Usp37 | -5800 |
| Trim23 | -5677 |
| 2610020C07Rik | -5630 |
| Dexi | -5620 |
| Shroom3 | -5611 |
| Ercc8 | -5594 |
| Pign | -5572 |
| Mif | -5513 |
| Mavs | -5467 |
| Kbtbd12 | -5456 |
| Mapk1ip1 | -5420 |
| Six4 | -5388 |
| Pln | -5379 |
| Impact | -5346 |
| Vmp1 | -5343 |
| Slc35e2 | -5303 |
| Lyrm7 | -5262 |
| Fam162a | -5135 |
| Adcy10 | -5060 |
| Ndufaf2 | -5019 |
| Mysm1 | -5018 |
| Cog1 | -4968 |
| Srek1ip1 | -4933 |
| Ppwd1 | -4887 |
| Mrps35 | -4850 |
| Fut8 | -4791 |
| Rbm7 | -4787 |
| 5830444B04Rik | -4774 |
| Ptpn3 | -4725 |
| Zw10 | -4692 |
| Mrpl35 | -4628 |
| Caml | -4538 |
| Zfp622 | -4514 |
| Pnkd | -4494 |
| Gm16023 | -4277 |
| Mnat1 | -4205 |
| Cltc | -4154 |
| Jun | -4145 |
| Immt | -4126 |
| Ptrh2 | -4093 |
| Vezf1 | -4043 |
| 2610035D17Rik | -4027 |
| 2310015A10Rik | -4000 |
| Tgoln1 | -3929 |
| Palm2 | -3891 |
| Tubd1 | -3864 |
| Rpp14 | -3861 |
| Gdpd1 | -3834 |
| Lrrc27 | -3797 |
| Slc41a1 | -3705 |
| Stk38l | -3694 |
| Dcaf6 | -3677 |
| Cmya5 | -3637 |
| Gspt1 | -3570 |
| Hdac4 | -3558 |
| Ptcd3 | -3545 |
| Larp1b | -3478 |
| Ndufa10 | -3455 |
| Rsl1d1 | -3419 |
| Rgsl1 | -3405 |
| Necap1 | -3332 |
| Rps6kb1 | -3248 |
| Sdhb | -3240 |
| Med13 | -3155 |
| Slc35b2 | -3096 |
| Gabarapl1 | -3019 |
| Ccdc58 | -2978 |
| Btbd6 | -2974 |
| Ppard | -2973 |
| Ebf3 | -2965 |
| Hbs1l | -2952 |
| Tpst2 | -2934 |
| Aurkaip1 | -2930 |
| Polr3b | -2896 |
| Ccni | -2877 |
| Morc3 | -2871 |
| Sec22a | -2790 |
| Tbc1d12 | -2782 |
| Rmnd5a | -2767 |
| Nkain2 | -2754 |
| Rpl36 | -2724 |
| Zmiz1 | -2703 |
| Dcaf12 | -2657 |
| Fez2 | -2642 |
| Ptpn14 | -2623 |
| Srgap2 | -2582 |
| Mgll | -2562 |
| Il11ra1 | -2473 |
| Gm16268 | -2431 |
| Arntl2 | -2414 |
| Crybb1 | -2307 |
| Smarcb1 | -2301 |
| Gm15612 | -2300 |
| Kdm3a | -2267 |
| 2310001H17Rik | -2265 |
| Stard8 | -2260 |
| Cdc5l | -2205 |
| Glrx3 | -2141 |
| Scaf4 | -2101 |
| Nt5dc3 | -2100 |
| Ppif | -2061 |
| Brdt | -2040 |
| Srek1 | -2030 |
| Gtf2ird2 | -1996 |
| Specc1l | -1942 |
| Gm15627 | -1880 |
| Gm15893 | -1858 |
| Nln | -1839 |
| Mxra8 | -1776 |
| Tfip11 | -1754 |
| Srsf1 | -1745 |
| Pxk | -1675 |
| Tgfbr3 | -1600 |
| Fam193b | -1598 |
| Nae1 | -1577 |
| Ubap1 | -1556 |
| B4galt7 | -1547 |
| Pgm1 | -1525 |
| Nudt2 | -1517 |
| Inpp5a | -1513 |
| Fbxo42 | -1438 |
| Stk38 | -1437 |
| Appl2 | -1436 |
| 1810014B01Rik | -1408 |
| Hsp90ab1 | -1405 |
| Klf10 | -1395 |
| Gm16196 | -1344 |
| Bag1 | -1120 |
| Ccnl2 | -1109 |
| Ctnnal1 | -1050 |
| Rpl21 | -999 |
| Rpl29 | -985 |
| Btg3 | -983 |
| Msi2 | -953 |
| Pgrmc2 | -947 |
| Adamts6 | -930 |
| Dhx40 | -903 |
| Cxadr | -890 |
| Osbpl1a | -863 |
| Dctn3 | -806 |
| Phlpp1 | -791 |
| Ssu72 | -788 |
| Oxa1l | -782 |
| Chodl | -763 |
| Brpf3 | -749 |
| Slc6a18 | -728 |
| Mapk14 | -622 |
| Ruvbl1 | -608 |
| Srbd1 | -559 |
| 1110017D15Rik | -474 |
| Zfp36l1 | -450 |
| Pja2 | -430 |
| Chmp3 | -422 |
| Usp39 | -393 |
| Hint1 | -340 |
| Sod1 | -333 |
| Rell1 | -316 |
| Ipo13 | -315 |
| Prr7 | -181 |
| Fbxo4 | -57 |
| 6430590A07Rik | -51 |
| Rpl35a | -24 |
| Txndc15 | -12 |
| Lpin1 | 5 |
| Ints2 | 17 |
| Serinc5 | 23 |
| Zbtb42 | 48 |
| Car7 | 74 |
| Mtch1 | 82 |
| Mapkapk2 | 91 |
| Mmp11 | 99 |
| Brf1 | 143 |
| Dirc2 | 144 |
| Sumf1 | 148 |
| Tmem150a | 245 |
| Ubr5 | 256 |
| Eefsec | 317 |
| Gtf2i | 319 |
| Rnf103 | 373 |
| Azin1 | 391 |
| Gpx3 | 425 |
| Mtx3 | 475 |
| Prkcz | 477 |
| Fntb | 520 |
| Cdh5 | 549 |
| Mrpl20 | 552 |
| Clptm1l | 566 |
| Tmem63b | 599 |
| Dph2 | 619 |
| Tex22 | 649 |
| Polr1a | 793 |
| Dync1li2 | 873 |
| Plekha1 | 880 |
| Gm14233 | 891 |
| Spats1 | 916 |
| Fam72a | 920 |
| Zcchc24 | 951 |
| Sec61a1 | 958 |
| 9430038I01Rik | 1007 |
| Srsf3 | 1041 |
| Ctdsp1 | 1083 |
| Ddx41 | 1159 |
| Hspbap1 | 1162 |
| Cep152 | 1181 |
| Fabp3 | 1214 |
| Ddx46 | 1253 |
| Zfp523 | 1275 |
| Pcbd2 | 1297 |
| Lman2 | 1301 |
| Rexo2 | 1382 |
| Ubap2 | 1385 |
| Elovl7 | 1398 |
| Cyp20a1 | 1399 |
| Sept11 | 1470 |
| Dvl1 | 1480 |
| Cabyr | 1561 |
| Tppp | 1623 |
| Pacs2 | 1699 |
| Mib2 | 1702 |
| Rer1 | 1769 |
| Plce1 | 1826 |
| Slc39a11 | 1868 |
| Rnf220 | 1929 |
| D11Wsu47e | 1976 |
| Abhd6 | 2043 |
| Gnb1 | 2048 |
| Cdca4 | 2063 |
| Cabin1 | 2195 |
| Snx29 | 2212 |
| Sgtb | 2229 |
| Crocc | 2230 |
| Rnft1 | 2242 |
| Siva1 | 2245 |
| Snn | 2365 |
| Rep15 | 2548 |
| Raph1 | 2570 |
| Atp6v1c1 | 2602 |
| Rab15 | 2639 |
| Gm15912 | 2640 |
| Usp28 | 2682 |
| Rcc2 | 2741 |
| 1700037H04Rik | 2774 |
| Dnaic1 | 2797 |
| Slc36a1 | 2799 |
| Tns1 | 2906 |
| Nufip1 | 2915 |
| Hells | 2923 |
| Atp6v0b | 2952 |
| Ccng2 | 2967 |
| Six1 | 2999 |
| Cep72 | 3026 |
| Ski | 3080 |
| Foxj2 | 3082 |
| Rrp15 | 3162 |
| Dut | 3243 |
| Slc6a9 | 3251 |
| Sox9 | 3255 |
| Dmap1 | 3298 |
| Srpk1 | 3349 |
| Zc3h7a | 3593 |
| Eri3 | 3666 |
| Tsc22d1 | 3673 |
| Pdlim7 | 3676 |
| Bnc2 | 3721 |
| Rap2a | 3794 |
| D16Ertd472e | 3815 |
| Tiam1 | 3824 |
| Brd9 | 3835 |
| Jakmip3 | 3877 |
| Galk2 | 3878 |
| Chrdl1 | 3893 |
| Rcsd1 | 3940 |
| Rab24 | 3952 |
| Fbxo7 | 3956 |
| Rpl10a | 3972 |
| Mrps23 | 3974 |
| Tpra1 | 3988 |
| Noc3l | 4004 |
| Vwa1 | 4090 |
| Efnb1 | 4152 |
| Slc36a2 | 4161 |
| Kctd20 | 4229 |
| Tmbim1 | 4244 |
| Susd2 | 4258 |
| Podxl2 | 4260 |
| Tead3 | 4278 |
| BC004004 | 4288 |
| Fance | 4301 |
| Nol6 | 4327 |
| Dynll2 | 4337 |
| Cdc42se2 | 4343 |
| Gm10563 | 4384 |
| Twist2 | 4423 |
| Anxa6 | 4425 |
| Xylb | 4451 |
| Cmtm4 | 4491 |
| Acaa1a | 4521 |
| Setd4 | 4528 |
| Exog | 4559 |
| Ube2r2 | 4583 |
| Tacc2 | 4600 |
| Fam184a | 4624 |
| Aamp | 4626 |
| Grk6 | 4676 |
| Rnf181 | 4689 |
| Gtf2ird1 | 4710 |
| Ypel2 | 4739 |
| G3bp1 | 4806 |
| 4930509G22Rik | 4864 |
| Abtb1 | 4925 |
| Atp13a2 | 4954 |
| Cklf | 4967 |
| Mmp23 | 4977 |
| Kif24 | 5030 |
| Capn6 | 5034 |
| Mta1 | 5050 |
| Cenpk | 5075 |
| Tmem88b | 5099 |
| Ttc39c | 5116 |
| Arpc2 | 5119 |
| B4galt2 | 5123 |
| Pdia5 | 5163 |
| Clec1a | 5192 |
| Abca6 | 5198 |
| Pdp2 | 5214 |
| Scube3 | 5245 |
| Zpbp | 5264 |
| Gstt1 | 5293 |
| Lsamp | 5316 |
| Tk2 | 5369 |
| Smyd1 | 5380 |
| Slc29a1 | 5436 |
| Abca8a | 5440 |
| Dok3 | 5465 |
| Mfap5 | 5474 |
| Bcl6 | 5510 |
| Mfap2 | 5527 |
| Necap2 | 5532 |
| Slit3 | 5620 |
| Ddc | 5626 |
| Actn1 | 5657 |
| Spry1 | 5692 |
| Greb1 | 5748 |
| Btbd16 | 5754 |
| Atox1 | 5756 |
| Aars2 | 5774 |
| Acvr2b | 5900 |
| Fzd6 | 5947 |
| Anxa11 | 5949 |
| Def6 | 5951 |
| Sfrp2 | 5965 |
| Gm16191 | 5988 |
| Rnf24 | 5995 |
| Lpcat1 | 5997 |
| Gm2a | 6024 |
| Zswim6 | 6062 |
| Ighm | 6069 |
| Gstt2 | 6093 |
| Ppil1 | 6116 |
| Prelid1 | 6123 |
| Nudt14 | 6181 |
| Timp3 | 6221 |
| Sparc | 6233 |
| Abca9 | 6287 |
| Mcm9 | 6290 |
| Clec7a | 6291 |
| Eid1 | 6345 |
| Adra1d | 6469 |
| Smox | 6473 |
| Akt1 | 6491 |
| Clec2i | 6501 |
| Crip1 | 6522 |
| Emp1 | 6553 |
| Fbn1 | 6586 |
| Gm16029 | 6630 |
| Vamp8 | 6635 |
| Pak3 | 6646 |
| Ppfibp1 | 6690 |
| Flnb | 6745 |
| Pqlc3 | 6755 |
| Ckap4 | 6772 |
| Fat2 | 6788 |
| Nnmt | 6866 |
| Hunk | 6906 |
| Ggt5 | 6924 |
| Slc16a9 | 6940 |
| Crip2 | 6943 |
| Trip13 | 7049 |
| Jag2 | 7068 |
| Nkd2 | 7091 |
| Myef2 | 7108 |
| Rgs16 | 7136 |
| Mcm2 | 7137 |
| Cdc25b | 7165 |
| Gm15987 | 7171 |
| Plekhg3 | 7197 |
| Chaf1b | 7216 |
| Cntln | 7231 |
| Anxa2 | 7257 |
| Dbn1 | 7259 |
| Miat | 7281 |
| Fignl1 | 7299 |
| Rassf5 | 7383 |
| Rnasel | 7384 |
| Samsn1 | 7385 |
| Spef1 | 7400 |
| Ntsr2 | 7425 |
| Cdc42ep4 | 7436 |
| Cdc7 | 7456 |
| Ahnak2 | 7462 |
| Clec4a3 | 7571 |
| Parp9 | 7628 |
| Adora2a | 7665 |
| Naaa | 7677 |
| Slc12a7 | 7688 |
| Inf2 | 7716 |
| Cmtm3 | 7719 |
| Tlr2 | 7767 |
| Scn5a | 7808 |
| Clec4a4 | 7859 |
| Klrk1 | 7870 |
| BC035044 | 7881 |
| Gpr132 | 7899 |
| Clec9a | 7916 |
| Cd8a | 7985 |
| Pld4 | 8146 |
| C3ar1 | 8160 |
| Apobec1 | 8204 |
| Cdkn1a | 8225 |
| Dtx3l | 8267 |
| Litaf | 8272 |
| Ncf1 | 8310 |
| Rrad | 8339 |
| Tnfrsf11a | 8341 |
| Slc7a7 | 8360 |
| Prkch | 8376 |
| Clec12a | 8399 |
| Clec4a1 | 8411 |
| Nfkbie | 8416 |
| Ikbke | 8448 |
| Parp14 | 8506 |
| Slc11a1 | 8515 |
| Socs1 | 8518 |
Here is the session info with all the versions of packages used.
sessionInfo()## R version 4.0.2 (2020-06-22)
## Platform: x86_64-pc-linux-gnu (64-bit)
## Running under: Ubuntu 18.04.4 LTS
##
## Matrix products: default
## BLAS: /usr/lib/x86_64-linux-gnu/blas/libblas.so.3.7.1
## LAPACK: /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3.7.1
##
## locale:
## [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
## [3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8
## [5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8
## [7] LC_PAPER=en_US.UTF-8 LC_NAME=C
## [9] LC_ADDRESS=C LC_TELEPHONE=C
## [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
##
## attached base packages:
## [1] parallel stats4 stats graphics grDevices utils datasets
## [8] methods base
##
## other attached packages:
## [1] pkgload_1.1.0 GGally_2.0.0
## [3] beeswarm_0.2.3 gtools_3.8.2
## [5] echarts4r_0.3.2 mitch_1.0.6
## [7] MASS_7.3-51.6 fgsea_1.14.0
## [9] gplots_3.0.3 DESeq2_1.28.1
## [11] SummarizedExperiment_1.18.1 DelayedArray_0.14.0
## [13] matrixStats_0.56.0 Biobase_2.48.0
## [15] GenomicRanges_1.40.0 GenomeInfoDb_1.24.2
## [17] IRanges_2.22.2 S4Vectors_0.26.1
## [19] BiocGenerics_0.34.0 reshape2_1.4.4
## [21] forcats_0.5.0 stringr_1.4.0
## [23] dplyr_1.0.0 purrr_0.3.4
## [25] readr_1.3.1 tidyr_1.1.0
## [27] tibble_3.0.1 ggplot2_3.3.2
## [29] tidyverse_1.3.0
##
## loaded via a namespace (and not attached):
## [1] colorspace_1.4-1 ellipsis_0.3.1 rprojroot_1.3-2
## [4] XVector_0.28.0 fs_1.4.2 rstudioapi_0.11
## [7] bit64_0.9-7 AnnotationDbi_1.50.1 fansi_0.4.1
## [10] lubridate_1.7.9 xml2_1.3.2 splines_4.0.2
## [13] geneplotter_1.66.0 knitr_1.29 jsonlite_1.7.0
## [16] broom_0.5.6 annotate_1.66.0 dbplyr_1.4.4
## [19] shiny_1.5.0 compiler_4.0.2 httr_1.4.1
## [22] backports_1.1.8 assertthat_0.2.1 Matrix_1.2-18
## [25] fastmap_1.0.1 cli_2.0.2 later_1.1.0.1
## [28] htmltools_0.5.0 tools_4.0.2 gtable_0.3.0
## [31] glue_1.4.1 GenomeInfoDbData_1.2.3 fastmatch_1.1-0
## [34] Rcpp_1.0.4.6 cellranger_1.1.0 vctrs_0.3.1
## [37] gdata_2.18.0 nlme_3.1-148 xfun_0.15
## [40] testthat_2.3.2 rvest_0.3.5 mime_0.9
## [43] lifecycle_0.2.0 XML_3.99-0.3 zlibbioc_1.34.0
## [46] scales_1.1.1 hms_0.5.3 promises_1.1.1
## [49] RColorBrewer_1.1-2 yaml_2.2.1 memoise_1.1.0
## [52] gridExtra_2.3 reshape_0.8.8 stringi_1.4.6
## [55] RSQLite_2.2.0 highr_0.8 genefilter_1.70.0
## [58] desc_1.2.0 caTools_1.18.0 BiocParallel_1.22.0
## [61] rlang_0.4.6 pkgconfig_2.0.3 bitops_1.0-6
## [64] evaluate_0.14 lattice_0.20-41 htmlwidgets_1.5.1
## [67] bit_1.1-15.2 tidyselect_1.1.0 plyr_1.8.6
## [70] magrittr_1.5 R6_2.4.1 generics_0.0.2
## [73] DBI_1.1.0 pillar_1.4.4 haven_2.3.1
## [76] withr_2.2.0 survival_3.2-3 RCurl_1.98-1.2
## [79] modelr_0.1.8 crayon_1.3.4 KernSmooth_2.23-17
## [82] rmarkdown_2.3 locfit_1.5-9.4 grid_4.0.2
## [85] readxl_1.3.1 data.table_1.12.8 blob_1.2.1
## [88] reprex_0.3.0 digest_0.6.25 pbmcapply_1.5.0
## [91] xtable_1.8-4 httpuv_1.5.4 munsell_0.5.0END of report