1. GOrilla, REVIGO, GSEA
2. GSEA version 2.2.3 (versions for GOrilla and REVIGO not described
3. Gene Ontology, predefined TRM-associated gene sets from previous studies
4. Yes (Mus musculus genome annotations and expressed genes with FPKM > 0.3)
5. Hypergeometric test (GOrilla), Gene Set Enrichment Analysis (GSEA) permutation-based method |
6. Yes