Abstract Backgroud Pancreatic cancer (PC) is a highly invasive malignancy with extremely poor prognosis. STK31 has been identified as a cancer‐testis (CT) gene, but its function in PC has not been elucidated well. Methods The effect of STK31 on cell proliferation, migration and invasion was investigated by in vitro and in vivo experiments and total RNA sequencing and targeted bisulfite sequencing was applied to explore the potential regulatory mechanisms of STK31 in PC. Results By analysis of tissue samples and the clinicopathologic features, we found that STK31 was reactivated in PC and associated with poor prognosis. In addition, the vitro and vivo studies indicated that STK31 could promote PC progression by facilitating cell proliferation, migration and invasion, and the indication. Targeted Bisulfite Sequencing showed that STK31 was regulated by methylation. Furthermore, the results of total RNA sequencing suggested that STK31 was closely related to signal transduction, metabolism, and the immune system. Conclusions This study demonstrates that STK31, as a CT gene, can promote the development of PC and is regulated by methylation. STK31 could be considered as a potential therapeutic target for PC. Keywords: CT gene, immunotherapy, invasion, migration, proliferation, STK31 __________________________________________________________________ STK31 was reactivated in PC and associated with poor prognosis. STK31 could promote PC progression by facilitating cell proliferation, migration and invasion in vitro and vivo studies. Targeted Bisulfite Sequencing showed that STK31 was regulated by methylation. And total RNA sequencing suggested that STK31 was closely related to signal transduction, metabolism and the immune system. graphic file with name CAM4-12-7273-g001.jpg 1. INTRODUCTION Pancreatic cancer (PC) is a highly invasive malignancy and the prognosis is extremely poor. In the United States, it is the fourth main cause of cancer‐related deaths both in male and female with a poor 5‐year survival rate of 10%.[38] ^1 Radical resection combined with systematic chemotherapy could be the only chance for curing the condition.[39] ^2 And it seems promising that immunotherapy can benefit PC patients in clinical research.[40] ^3 According to Oliver's study,[41] ^4 radical resection combined with chemotherapy can provide a 5‐year survival rate to 30%–40%. However, only about 10%–15% of the patients have resectable lesions and half of PC patients present distant metastasis when diagnosed.[42] ^5 Due to the high lethality and slow progression in diagnosing and treatment, PC is predicted to become the second leading cancer‐related mortality by 2030.[43] ^6 Therefore, early diagnosis and new effective therapeutic targets would be the key to improving the outcomes of the condition in PC. Cancer‐testis (CT) genes are a class of genes whose expression is restricted to testis in normal tissues, but frequently aberrantly expressed in some cancers.[44] ^7 CT genes are considered as potential immunotherapy targets and diagnostic biomarkers of cancers owing to their fewer side effects because of the specific expression features.[45] ^8 , [46]^9 Serine/threonine kinase 31 (STK31, also known as TDRD8) has been identified as a CT gene in PC in our previous study and we have elucidated the potential clinical value of this gene.[47] ^10 In addition, STK31 has also been detected in gastric cancer,[48] ^11 colorectal cancer,[49] ^12 cervical cancer,[50] ^12 and lung cancer.[51] ^13 The biological functions of STK31 such as maintaining the undifferentiated state,[52] ^14 promoting cell proliferation, and cell cycle regulation, has been studied in regards to these conditions.[53] ^15 It's been found in our previous studies that the high expression of STK31 suggested a poor prognosis of PC.[54] ^16 However, the function of STK31 in PC has not been demonstrated before. Thus, the aim of this present study was to elucidate the biological function and underlying mechanism of STK31 in PC by in vivo and in vitro experiments, which could give us a better understanding of the development of PC and also offer a new possibility for targeted therapy. 2. MATERIAL AND METHODS 2.1. Patients and samples Forty‐eight patients, who were confirmed as PC by two pathologists, were enrolled from the Pancreas Center, the First Affiliated Hospital with Nanjing Medical University. All these patients were underwent initial surgical resection between December 2016 and April 2017. In regards to public databases, the expression pattern can be confirmed by GEPIA2, which is a web service for analyzing the RNA sequencing expression data from the TCGA or GTEx projects by a standard processing pipeline.[55] ^17 This study was approved by the Institutional Review Board of the First Affiliated Hospital with Nanjing Medical University (2021‐SR‐483) and a waiver of written informed consent was granted by the Institutional Review Board Committee. 2.2. Cell lines Human PC cell lines BXPC‐3, Capan‐2, CFPAC‐1, COLO‐357, MIA PaCa‐2, and PANC‐1 were purchased from the Shanghai Cell Bank. The cell line hTERT‐HPNE was obtained from the American Type Culture Collection (ATCC, CRL‐4037). All these cell lines were cultured according to their manufacturer's instructions. 2.3. Transfection of siRNAs and plasmids The small interfering RNAs (siRNAs) and plasmid to STK31 were purchased from GenePharma (Shanghai, China) and GeneChem (Shanghai, China), respectively. The sequences of siRNAs were as follows: siRNA#1: 5’‐GGACCAG AAACUGAUUGAATT‐3′(sense) and 5’‐UUCAAUCAGU UUCUGGUCCTT‐3′ (antisense); siRNA#2: 5’‐GAGGAG UUCACCAGUGUUATT‐3′ (sense) and 5’‐UAACACUGG UGAACUCCUCTT‐3′ (antisense); siRNA#3: 5’‐GGAGA UAGCUCUGGUUGAUTT‐3′ (sense) and 5’‐AUCAACCA GAGCUAUCUCCTT‐3′ (antisense). The plasmid vector is GV144 (CMV‐EGFP‐MCS‐SV40‐Neomycin) and carrying the sequences of STK31 ([56]NM_032944). The transfection of siRNAs and plasmids were performed with Lipofectamine3000 according to the manufacturer's instructions. Cells were collected for subsequent experiments after transfection for 48–72 hours. 2.4. Preparation of STK31‐overexpressing cells STK31‐overpressing lentivirus were constructed by OBiO Technology Corp. The full‐length coding region of human STK31 was subcloned into the pLenti‐EF1a‐P2A‐Puro‐CMV‐STK31. Stable cell lines were selected by culturing in complete medium containing 5 μg/mL puromycin. STK31 expression was confirmed by qRT‐PCR and western blotting. 2.5. Quantitative RT‐PCR and western blotting Total RNAs were extracted from cells and tumor tissues by Total RNA Kit I (Omega Bio‐tek Inc) and then reverse‐transcribed into cDNA with HiScript II qRT SuperMix (Vazyme Inc). The qRT‐PCR was performed by the StepOnePlus Real‐Time PCR System (Applied Biosystems) and the primers were the same as in the previous study.[57] ^10 The total protein from cells was extracted using a RIPA lysis buffer. The extracted protein was mixed with a 5× SDS‐PAGE sample loading buffer and boiled. 2.6. Targeted bisulfite sequencing and methylation detection Genomic DNA from 27 tumor tissue samples of 48 patients was extracted by AllPrep DNA/RNA Mini Kit (Qiagen). Methylation analysis was performed with a working concentration of 20 ng/μL and 500 ng genomic DNA was subjected to bisulfite conversion using the EpiTect Fast DNA Bisulfite Kit (Qiagen). CpG sites located in the promoter of the STK31 gene were selected from the 2 k upstream of a transcriptional start site (TSS) to the 1 k downstream of the first exon, and two CpG regions of the STK31 gene were included. The methylation levels of the STK31 gene promoter were analyzed by MethylTarget™ (Genesky Biotechnologies Inc.), an NGS‐based multiple methylation specific PCR analysis method. According to the manufacturer's protocol, the detection of STK31 methylation was performed on Illumina Hiseq 2000 with a 2 × 150 bp sequencing mode. The methylation levels of the 33 CpG sites were measured. 2.7. Cell count kit‐8 assay and EdU assay Cells transfected with siRNA and plasmids were seeded in 96‐well plates at a density of 30% and 70% area of per well. For cell count kit‐8 assay (CCK‐8), the CCK‐8 assay kit (Dojindo) was utilized to detect the ability of cell proliferation. The premixed 100 μl medium which consisted of 10:1 complete medium and CCK8 reagent was added to each well every 24 hours. After incubation in the dark at 37 °C for 2 hours, then the mixture was measured at 450 nm by a spectrometer. For EdU assay, a Cell Light EdU DNA imaging Kit (Ribo Bio) was used. Cell proliferation was evaluated by the proportion of positive stained cells. Three duplicated wells were detected. 2.8. Clone formation assay The 1000 transfected cells were seeded in each well of 6‐well plate. The complete medium was changed every 5 days. After 10 days, the clones were stained with crystal violet solution. The number of clones was quantified to assess cell proliferation. 2.9. Cellular transwell assay Twenty‐four well Millicell Hanging Cell Culture Inserts (Merck Millipore) and Biocoat Matrigel (BD Bioscience) were used to access the cell migration and invasion ability. 5 × 10^4 transfected cells included in the 200 μl serum‐free medium were seeded in the upper chamber with an uncoated or Matrigel‐coated membrane, and 600 μl complete medium was added into the lower room as a chemoattractant. After 24 h of culturing for CFPAC‐1 and PANC‐1 and 48 h for MIA PaCa‐2, non‐migrating cells in the upper chamber were wiped. These cells migrating to the lower surface of the membrane were stained with crystal violet for 30 minutes and then photographed. 2.10. Animal study Four‐week‐old male BALB/c nude mice were obtained from the Animal Center of the Nanjing Medical University. A total of 12 mice were randomly divided into stable STK31‐overexpressing and control MIA PaCa‐2 cells groups. 2 × 10^7 tumor cells were injected into the axilla of mice for subcutaneous tumor formation. Once visible, the tumor size of these subcutaneous tumors were measured every 4 days. Four weeks later, after euthanizing all nude mice, the tumors were resected and photographed. And the size and weight of these subcutaneous tumor were measured. The animal use protocol has been reviewed and approved by the Animal Ethical and Welfare Committee (AEWC) of Nanjing Medical University (IACUC‐1904050). 2.11. RNA sequencing, differentially expressed genes (DGEs) identifying and function annotation and pathway enrichment analysis RNA sequencing was performed by BGISEQ Genetic Sequencer (BGI, China). Stable MIA PaCa‐2 cells with overexpression of STK31 was analyzed in comparison of vector control. Each group had three duplications. Genes with fold change (FC) ≥ 2 and adjusted p value≤0.001 were considered as DGEs. The gene ontology (GO) analysis and Kyoto Encyclopedia of Genes and Genomes (KEGG) analysis was performed for function annotation and pathway enrichment. 2.12. Statistical analysis Statistical analysis was performed by Graphpad Prism (Version 8.0) and R (Version 4.1.1). Quantitative data were expressed as mean ± SD from three duplicate experiments. The difference of the mean between two groups was analyzed by Student's t‐test. All the data was representative of three independent repeated experiments. In both TCGA and our PC cohort, we considered those lower quartile expression levels as low expression and the rest as high expression. The correlation between STK31 expression and methylation levels was examined by Pearson test. p < 0.05 was considered statistically significant. 3. RESULTS 3.1. Expression characterizations and roles of STK31 in PC As we have found in previous studies, the STK31 expression was restricted to the testis. We analyzed the expression of STK31 in PC and examples of normal pancreas in GEPIA2, and it showed that the expression of STK31 was higher in 179 PC than 171 normal pancreas (p < 0.05, Figure [58]1A). Furthermore, survival analysis revealed that patients with relatively high STK31 expression had poorer overall survival (Figure [59]1B). The results from our biobank showed similar results (Figure [60]1C). This data suggested STK31 was abnormally upregulated in PC and was associated with poor prognosis. The brief information of these PC patients from our cohort was described in Supplement Table [61]1. FIGURE 1. FIGURE 1 [62]Open in a new tab The expression pattern of STK31 gene. (A) STK31 was overexpressed in pancreatic cancer. Patients with relatively high expressions of STK31 had poorer overall survival rates in TCGA dataset (B) and samples from our biobank (C). 3.2. Inhibition of STK31 in CFPAC‐1 and PANC‐1 and overexpression in MIA PaCa‐2 The expression of STK31 was detected in hTERT‐HPNE cell line and six pancreatic cancer cell lines (Capan‐2, BXPC‐3, CFPAC‐1, MIA PaCa‐2, COLO‐357, and PANC‐1) by qRT‐PCR and western blot (Figure [63]2A, B). Compared to hTERT‐HPNE cell line, the STK31 expression level of mRNA and protein was elevated in CFPAC‐1 and PANC‐1 while lower STK31 expression was detected in MIA PaCa‐2. Hence, CFPAC‐1, PANC‐1, and MIA PaCa‐2 cell lines were selected for subsequent study. The interference efficiency for three siRNAs and plasmid of STK31 were examined by both qRT‐PCR and western blot (Figure [64]1C–E). After evaluating the efficiency, siRNA #1 and the plasmid of STK31 were applied for further functional experiments. FIGURE 2. FIGURE 2 [65]Open in a new tab Knockdown and overexpression of STK31. The expression of STK31 was detected by qRT‐PCR (A) and western blot (B) in HPNE and PC cell lines. The interference efficiency for three siRNAs and plasmid of STK31 were examined by both qRT‐PCR and western blot in three PC cells—CFPAC‐1 (C), PANC‐1 (D), and MIA PaCa‐2 (E). The representative data of all experiments are presented as the mean ± SEM. 3.3. The effect of STK31 on cell proliferation, migration, and invasion in PC CCK‐8, EDU, and clone formation assays were conducted to investigate the effect of STK31 on pancreatic cancer cell lines. As shown in Figure [66]3A, the results of CCK‐8 demonstrated that the knockdown of STK31 by siRNAs significantly impaired cell proliferation (P < 0.05). Similar results were obtained by EDU (Figure [67]3B) and clone formation assays (Figure [68]3C). On the contrary, overexpression of STK31 in MIA PaCa‐2 promoted cell proliferation. To further determine the influence of STK31 on PC cell proliferation, an in vivo study using stable STK31‐overexpressing MIA PaCa‐2 cell line prepared by STK31‐overexpressing lentivirus was performed. The results indicated that tumors in mice injected with overexpressing‐STK31 MIA PaCa‐2 cells grew faster, as they had larger tumor volume and tumor mass (p < 0.05 in both comparisons) (Figure [69]3D–F). These results suggested that STK31 could facilitate PC cell proliferation. The transwell assay was applied to investigate whether STK31 has an effect on cell migration and invasion. As shown in Figure [70]3G, cell migration and invasion were inhibited after the downregulation of STK31, whereas enhanced results were observed following the overexpression of STK31 (p < 0.05 in both comparisons). In conclusion, STK31 could promote the ability of proliferation, migration, and invasion in PC cells. FIGURE 3. FIGURE 3 [71]Open in a new tab STK31 promoted cell proliferation, migration, and invasion in pancreatic cancer. CCK‐8 (A), EDU (B), and clone formation (C) were performed to investigate cell proliferation after STK31 was downregulated and overexpressed. Magnification for B: 100× and scale bar = 200 μm. Stable MIA PaCa‐2 cells with overexpressed STK31 and vectors were injected subcutaneously in nude mice. Tumors in mice injected with MIA PaCa‐2 cells overexpressing STK31 grew faster, as they had larger tumor volumes (D) and tumor mass (E & F). Cell migration and invasion were conducted, and the magnification is 100 × and scale bar = 100 μm (G). The representative data of all experiments are presented as the mean ± SEM. *p < 0.05, **p < 0.01 or ***p < 0.001. 3.4. The association between methylation and expression levels of STK31 It is widely known that methylation could affect multiple physiological activities by regulating gene expression. To evaluate the effect of methylation on STK31 expression, we applied MethylTarget to detect the methylation level in 27 pancreatic cancer tissue samples. Finally, two significant CpG sites (STK31_29: −277 to −123 of transcriptional start site and STK31_38: −105 to 77 of transcriptional start site) located at STK31 were selected. Interestingly, the results showed that the methylation level of STK31_29 was negatively correlated with the expression of STK31, while STK31_38 was not (for STK31_29 CpG site: Pearson r = −0.44, p = 0.03; for STK31_38 CpG site: Pearson r = −0.32, p = 0.12; for total of two STK31 CpG sites: Pearson r = −0.47, p = 0.02; Figure [72]4). FIGURE 4. FIGURE 4 [73]Open in a new tab STK31 expression was regulated by methylation. Schematic diagrams showed the location of CpG sites STK31_29 (A) and STK31_38 (B). The visualizations of top three haplotype with the highest depth sequencing. The hollow circle represents unmethylated while the red circle represents methylated. There was an overall negative correlation between STK31 expression and methylation (C). The methylation level of STK31_29 (D) was negatively correlated with STK31 expression but STK31_38 (E) was not. 3.5. Identification of DGEs after overexpressing STK31 and GO and KEGG pathway analysis of DGEs After overexpressing STK31 in MIA PaCa‐2 cells, RNA sequencing was performed for further analysis. Twenty nine DGEs were identified including 18 upregulated and 11 downregulated genes (Figure [74]5A, B). To get further insight into the functions of the DGEs, GO and KEGG analyses were performed for these 29 genes. The KEGG analysis indicated that these DGEs were mainly associated with transport and catabolism, signal transduction, metabolism, immune system, and other biological pathways (Figure [75]5C). In GO biological process analysis, 29 DGEs were enriched in the cellular process, metabolic process as well as other biological processes (Figure [76]5D). FIGURE 5. FIGURE 5 [77]Open in a new tab Exploration of biological functions of DEGs. (A) The volcano plot for DGEs comparing stable STK31‐ overexpressed MIA PaCa‐2 cells with corresponding control cells. Eighteen upregulated genes (red dots) and 11 downregulated genes (blue dots) were identified. (B) Heatmap of DGEs. (C) KEGG pathways analysis of these DGEs. (D) GO analysis of these DGEs 4. DISCUSSION PC is a highly invasive and lethal malignancy with a poor prognosis. The complicated mechanism of tumorigenesis and its extremely malignant biological behaviour have made progression in early diagnosis and effective treatment stagnant.[78] ^2 , [79]^4 In this study, the results indicated that STK31 was abnormally reactivated in PC tissues. The high expression of STK31 was associated with poor prognosis of PC. STK31 could promote cancer progression by facilitating cell proliferation, migration, and invasion. As a result, STK31 is a oncogene and can be considered as a potential therapeutic target for the condition. STK31 was first identified in the spermatogonia in mice, and the human ortholog STK31 was also only detected in human testis among these samples from different parts of the body.[80] ^18 , [81]^19 Then Wu et al.[82] ^20 demonstrated STK31 was detected in germ cells of human testis and located in the cytoplasm. Studies investigating STK31 in cancers mostly focus on colorectal cancers before. In 2008, STK31 was detected by laser microdissection and cDNA microarray in colorectal cancer cells.[83] ^12 Furthermore, a STK31 peptide was able to induce immune responses by eliciting specific cytotoxic T lymphocytes.[84] ^12 STK31 was also reported to play a critical role to maintain the undifferentiated state of colon cancer cells, and a downregulation of STK31 could significantly suppress cell proliferation both in vitro and vivo studies.[85] ^14 Kuo et al. also indicated that the expression level of STK31 in colorectal cancer cells was cell cycle‐dependent and that the abnormal overexpression of STK31 enhanced the cell abilities of migration and invasion without altering cell proliferation.[86] ^15 Furthermore, STK31 was reported to be a potential biomarker in predicting the metastasis of colorectal cancer[87] ^21 and to differentiate colorectal cancer from benign polyps.[88] ^22 Except for colorectal cancer, STK31 is also abnormally expressed in lung cancer. STK31 was reported to promote cell proliferation in lung cancer cells by the Wnt/β‐catenin signaling pathway and positive feedback regulation of c‐myc.[89] ^13 In general, the oncogenic role of STK31 indicated by the present study was consistent with previous reports. However, some results in this study should be taken carefully. The ability of the MIA PaCa‐2 cell line to pass through well is relatively weak so we have to double the duration of cellular transwell assay of MIA PaCa‐2 cells. Moreover, we actually employed PANC‐1 and MIA PaCa‐2 cell lines in vivo to explore the effect of STK31 on cell proliferation. However, subcutaneous tumorigenesis was barely observed in mice injected with PANC‐1 cells, and as a result the corresponding outcome was absent. Previous studies have identified that KRAS, CDKN2A, TP53, and SMAD4 was the major four mutation driver genes for PC.[90] ^2 However, mutation driver genes can only explain part of the carcinogenesis. Epigenetic drivers are also identified as a significant characteristic of tumorigenesis.[91] ^23 CT genes characterizing distinct expression in testis and some certain tumors are crucial members of epigenetic drivers.[92] ^24 In addition to contributing to spermatogenesis,[93] ^25 , [94]^26 STK31 is frequently expressed in various cancers,[95] ^12 thus serving as a CT gene. In our previous study, methylation is considered to be one of the mechanisms that regulates STK31 expression through TCGA database analysis.[96] ^10 In this study, we confirmed this result in the tumor tissues from our center. However, it is interesting that not all methylation levels of SKT31 CpG sites were associated with the STK31 expression. We found that only the SKT31_29 CpG site was associated with gene expression but not STK31_38. Currently the biological functions of CT genes are mostly unclear. Emerging evidence suggested that they could contribute to tumorigenesis by regulating transcriptional activity, mitotic fidelity, and protein degradation.[97] ^9 Due to the immune‐privileged status of the testis, ectopic expression of CT genes in cancers can induce immune responses with fewer side effects. As a result, CT genes products are also named CT antigens. The immunogenicity of CT antigens enables them to become potential targets for immunotherapy.[98] ^7 MAGEA‐3 is a founding member of CT antigens and vaccines targeting MAGEA‐3 have been tested in patients.[99] ^27 The safety and immunogenicity have been demonstrated in MAGEA‐3 positive patients with non‐small cell lung cancer.[100] ^28 Another famous CT antigen, NY‐ESO‐1, has also initiated clinical trials. Preliminary results have shown clinically meaningful benefits, but the true effect needs further investigation.[101] ^29 , [102]^30 JQ‐1, an inhibitor of the CT antigen BRDT, was reported to inhibit the growth of xenograft models in PC.[103] ^31 Given that STK31 was one of the CT genes and the RNA sequencing results in this study suggest that STK31 was closely related to signal transduction and immune systems, it might be a potential target for immunotherapy of PC. In summary, although the safety and feasibility have been demonstrated, the true benefit of CT antigen‐based immunotherapy still needs further investigation. CT antigen specific immunotherapy in combination with chemotherapy or other immunotherapeutic treatments, such as checkpoint blockades, may be a promising direction. Several limitations still existed in this study. First, although we have observed that STK31 was an important effect on the development of PC, no in‐depth mechanism has been studied. We will investigate the mechanism of STK31 affecting on PC in future studies. Second, we do not have a good way to affect the expression of STK31 in vivo to improve the prognosis of PC. Methylation, as well as miRNAs which were described in our previous studies,[104] ^16 would be a potential way of treatment. Third, because of the limited sample size, we have not been able to definite a value of STK31 expression level to distinguish the prognosis of PC, which is helpful for clinical decision making. In conclusion, STK31 was aberrantly upregulated and suggested a poor prognosis in patients with PC. STK31 promotes development of PC by accelerating cell proliferation, migration, and invasion. However, the expression level of STK31 is regulated by methylation. Due to the special CT gene expression pattern, STK31 could be considered as a promising biomarker for early diagnosis and a hopeful therapeutic target for PC. AUTHOR CONTRIBUTIONS Hao Gao: Data curation (equal); formal analysis (equal); writing – original draft (equal). Baobao Cai: Data curation (equal); formal analysis (equal); writing – original draft (equal). Zipeng Lu: Resources (supporting). Guangfu Wang: Data curation (supporting). Yong Gao: Data curation (supporting). Yi Miao: Project administration (supporting); supervision (equal). Kuirong Jiang: Conceptualization (supporting); project administration (equal); supervision (lead). Kai Zhang: Conceptualization (lead); resources (equal); validation (lead); writing – review and editing (lead). CONFLICTS OF INTEREST The authors have no conflict of interest to declare . ETHICAL APPROVAL This study was approved by the Institutional Review Board of the First Affiliated Hospital of Nanjing Medical University (2021‐SR‐483). Supporting information Table S1 [105]Click here for additional data file.^ (11.8KB, docx) ACKNOWLEDGMENTS