Abstract Purpose To investigate the effectiveness of modified Bu-Shen-Yi-Qi decoction (MBSYQ) in the treatment of osteoporosis associated with chronic obstructive pulmonary disease (COPD) and its underlying mechanisms of action. Methods Disease targets, active ingredients and targets were predicted by TTD, CTD, DisGeNET, HERB (BenCaoZuJian as its Chinese name), and multiple-TCM databases; In addition, the screened targets were performed via the online platforms DAVID 6.8 and Metascape for GO and KEGG pathway enrichment analysis; The relationship between the MBSYQ and core targets were verified by molecular docking technique. Then we established a COPD-associated osteoporosis rat model by passive 24-week cigarette exposure. We assessed the efficacy of MBSYQ by lung histopathology assessment and distal femur/the first lumbar vertebra (L1) microstructural assay. In addition, we performed tibial RNA sequencing, which was validated by RT-PCR and Western blot. Results Screening revealed that the 350 active compounds of MBSYQ anchored 228 therapeutic targets for COPD-related osteoporosis; KEGG pathway enrichment analysis showed that the key targets mainly regulated MAPK and PI3K/AKT signaling pathways. In vivo studies showed that MBSYQ treatment alleviated pathological alterations in lung tissue, and reversed the bone loss and microstructure damage in the femur/L1 of model rats. The RNA seq indicated that MBSYQ could upregulate genes associated with anti-oxidative stress and aerobic respiration. The GSEA analysis displayed that MAPK and PI3K/AKT pathways were inhibited by CS exposure and activated by MBSYQ. Conclusion MBSYQ is effective in the prevention and treatment of COPD-related osteoporosis, partially achieved by improving oxygen metabolism and activating MAPK and PI3K/AKT pathways. Keywords: COPD, osteoporosis, modified Bu-Shen-Yi-Qi formulae, network pharmacology, transcriptomics Introduction Data show that the third leading cause of death worldwide is caused by chronic obstructive pulmonary disease (COPD).[36]1 It’s a common, preventable and treatable chronic respiratory disease characterized by incomplete reversibility and progressive airflow limitation. COPD is often associated with comorbidities and systemic consequences, including lung cancer, muscle weakness, osteoporosis, and further decreases the quality of life and increases mortality.[37]2–4 Patients with COPD are significantly more likely to develop osteoporosis than healthy individuals, and its severity is strongly associated with a decrease in bone mineral density (BMD).[38]5–10 In addition, the most common cause of secondary osteoporosis in men may be due to COPD.[39]11 Chronic airway inflammation, characterized by inflammatory cell infiltration and increased secretion of inflammatory mediators, is thought to be the main cause of the ongoing progression of COPD.[40]12 Osteoporosis is generally characterized by low bone mass, microarchitectural degeneration, and increased fracture risk.[41]13 Although the prevalence of osteoporosis is significantly increased in patients with COPD compared to normal people, the causal and molecular links between them remain unclear.[42]14 It is difficult to clarify the pathological mechanism because of the various factors that affect bone metabolisms, such as smoking, weight, COPD acute exacerbation, sarcopenia, steroid use, etc.[43]15 To make matters worse, COPD-related osteoporosis is highly neglected by respiratory and physicians, and no formal guidelines for managing COPD-associated osteoporosis.[44]2,[45]16,[46]17 Due to the paucity of specific evidence in COPD patients, treatment is generally guided by the practice guidelines for primary osteoporosis. Current treatments include interventions for patients’ lifestyles (moderate exercise, healthy diet, etc.) and pharmacological treatments (calcium and vitamin D supplementation, etc.), selective estrogen receptor modulators, RANKL inhibitors, calcitonin, bisphosphonates, and PTH receptor agonists, etc.[47]18 However, it’s limited in its efficiency in restoring bone loss or increasing bone mass and has unavoidable side effects.[48]19 Mesenchymal stem cell transplantation is thought to be a novel treatment for osteoporosis. However, it is still in preclinical studies and clinical trials, and its safety and efficacy need to be further evaluated.[49]20,[50]21 Traditional Chinese Medicine (TCM) is an integrated system of medicine that has played an important role in the maintenance of people’s health worldwide for thousands of years.[51]22,[52]23 The efficacy of TCM has been proven to be a viable alternative therapy for the treatment of diseases.[53]24 Bu-Shen-Yi-Qi decoction, composed of three herbs including Epimedium brevicornum Maxim. (Epimedii Herba), Astragalus mongholicus Bunge (Radix Astragali), and Rehmannia glutinosa (Gaertn.) DC. (Radix Rehmanniae), have been proven effective in clinical and experimental studies for the treatment of chronic respiratory diseases such as asthma and COPD.[54]25–28 Our previous randomized, double-blinded, multicenter clinical trial demonstrated that it improved lung function, reduced the frequency of acute exacerbations, and attenuated the inflammation response in COPD patients.[55]27 In addition, a modified version of the Bu-Shen-Yi-Qi formulae (MBSYQ, Scutellaria baicalensis Georgi (Radix Scutellariae) and Paeonia lactiflora Pall. (Radix Paeoniae Rubra) were added, detailed in [56]Table S1) is more effective in treating acute exacerbations of COPD, such as shortness of breath and relief of cough.[57]29 However, it remains unclear whether MBSYQ is effective in the prevention and treatment of COPD-related osteoporosis. We first explored the potential molecule link between COPD and osteoporosis from the perspective of network pharmacology, the possible mechanisms of MBSYQ for COPD-related osteoporosis treatment, and then established a 24-week CS-induced animal model to validate the pathological mechanisms, influencing factors and underlying mechanisms of MBSYQ for COPD-related osteoporosis treatment, which can provide further clinical applications and basic research. The study design is displayed in [58]Figure 1 Figure 1. [59]Figure 1 [60]Open in a new tab Schematic diagram of the study to explore the pharmacological mechanisms of MBSYQ in COPD-related osteoporosis. Materials and Methods COPD & Osteoporosis-Related Protein Screening Therapeutic Target Database (TTD, [61]http://bidd.nus.edu.sg/group/cjttd/)[62]30 and Comparative Toxicogenomics Database (CTD, [63]http://ctdbase.org/)[64]31 can be used to screen target proteins for COPD and osteoporosis; Potential targets for COPD and osteoporosis were collected by DisGeNET database ([65]https://www.disgenet.org/).[66]32 We searched all three databases using the keywords “Chronic obstructive pulmonary disease” or “Osteoporosis” and set the species to “Homo sapiens”. Finally, we removed duplicates and integrated all information to further analyze proteins common to COPD and osteoporosis. Bioactive Ingredients Collection and Target Prediction Potentially active compound screening and candidate target prediction for MBSYQ were screened from the HERB database (BenCaoZuJian as its Chinese name, obtained from [67]http://herb.ac.cn/) which links 12,933 targets and 28,212 diseases to 7263 herbal medicines and 49,258 ingredients. They provided six pairwise relationships between them by integrating multiple-TCM databases (SymMap, TCMID 2.0, TCMSP 2.3, and TCM-ID) and manually 1966 reference comparisons.[68]33 We further searched SuperTarget ([69]https://bioinformatics.charite.de/supertarget/),[70]34 SwissTargetPrediction ([71]www.swisstargetprediction.ch),[72]35 Similarity ensemble approach (SEA, [73]https://sea.bkslab.org/),[74]36 STICH ([75]http://stitch.embl.de/)[76]37 and PharmMapper ([77]http://www.lilab-ecust.cn/pharmmapper/)[78]38 databases for component-target prediction of icaritin and astragaloside IV. Networks were built and visualized with Cytoscape 3.8.0.[79]39 Network parameters were calculated by the NetworkAnalyzer plugin. Gene Ontology (GO) and Pathway Enrichment Analysis To further reveal the mechanism of MBSYQ for COPD-related osteoporosis, through the online platforms DAVID 6.8 ([80]https://david.ncifcrf.gov/)[81]40 and Metascape ([82]https://metascape.org/),[83]41 the targets of MBSYQ for COPD-related osteoporosis therapy were additionally analyzed by GO and KEGG pathway enrichment. Molecule Docking Three-dimensional chemical structures of the core active ingredients were obtained from the PubChem database (NCBI, USA), and energy minimized by molecular mechanics-2 (MM2) force fields in Chem 3D Pro; The RCSB Protein Data Bank ([84]www.rcsb.org) was used to retrieve the crystal structures of the target proteins; The AutoDock tool (1.5.6) was performed for the addition of hydrogen atoms and the removal of water and heterogeneous molecule; AutoDock vina was employed to predict potential molecular binding patterns between components and candidate targets; the docked structures were analyzed via PyMol 2.3.0 ([85]http://www.pymol.org/). The position of the original ligand defines the center of the active site for protein-ligand docking, set to a grid size of 40 × 40×40 Ǻ in the x, y, and z directions, with the spacing between the two grid points set to 0.375 Ǻ. The most likely binding mode is the docking conformation corresponding to the lowest binding energy. Chemicals and Reagents Primary antibodies against P-JNK (4668T), P-ERK (4370), P-P38 (4511T), and β-actin (4970) were from Cell Signalling Technology (Danvers, USA). Anti-P-Akt (66444-1-Ig) was obtained from Proteintech. Commercial tobacco Daqianmen was purchased from Shanghai Jieqiang Tobacco, Sugar and Wine (Group) Co., Ltd. MBSYQ Preparation MBSYQ granules were purchased from Jiangyin Tianjiang Pharmaceutical Co., Ltd. Briefly, the herbs were decocted twice with water, then filtered and concentrated to a relative density of 1.11–1.13 (Astragalus mongholicus Bunge), 1.09–1.11 (Epimedium brevicornu Maxim.), 1.09–1.12 (Rehmannia glutinosa (Gaertn.) DC.), 1.15–1.17 (Scutellaria baicalensis Georgi) and 1.05–1.07 (Paeonia lactiflora Pall.) at 65±5°C, respectively. The herbal extracts were obtained by spray drying with 18–40 mesh screening and then quality controlled by ultraviolet-visible spectrophotometry (UU-Vis) and high-performance liquid chromatography (HPLC). The pellets of each herb were mixed in proportion and diluted with potable water before administration. Animal Model and Treatment Selected 40 male SD rats (6 weeks old, 160–200 g) (Sippr-BK Laboratory Animals Co. Ltd., Shanghai, China) and housed in a specific pathogen-free (SPF) condition under a 12: 12 h light-dark cycle and given free access to food and water. Animal experiments were approved by the Animal Experimentation Ethics Committee of Fudan University (Approval No. 202011005S). Rats were acclimated to the conditions for one week before the experiment and randomly divided into five groups (n = 8 per group): Normal control group, CS group, CS + MBSYQ low/medium/high dose group (6.25 g/kg, 12.5 g/kg, 25 g/kg). The medium doses given to rats were calculated based on the animal dose conversion table and body surface area.[86]42 Construction of rat model of chronic obstructive pulmonary disease with slight modifications from references.[87]43–45 Briefly, rats were placed in a homemade acrylic