Abstract Objective Adipose tissue mass is maintained by a balance between lipolysis and lipid storage. The contribution of adipose tissue lipogenesis to fat mass, especially in the setting of high-fat feeding, is considered minor. Here we investigated the effect of adipose-specific inactivation of the peroxisomal lipid synthetic protein PexRAP on fatty acid synthase (FASN)-mediated lipogenesis and its impact on adiposity and metabolic homeostasis. Methods To explore the role of PexRAP in adipose tissue, we metabolically phenotyped mice with adipose-specific knockout of PexRAP. Bulk RNA sequencing was used to determine transcriptomic responses to PexRAP deletion and ^14C-malonyl CoA allowed us to measure de novo lipogenic activity in adipose tissue of these mice. In vitro cell culture models were used to elucidate the mechanism of cellular responses to PexRAP deletion. Results Adipose-specific PexRAP deletion promoted diet-induced obesity and insulin resistance through activation of de novo lipogenesis. Mechanistically, PexRAP inactivation inhibited the flux of carbons to ethanolamine plasmalogens. This increased the nuclear PC/PE ratio and promoted cholesterol mislocalization, resulting in activation of liver X receptor (LXR), a nuclear receptor known to be activated by increased intracellular cholesterol. LXR activation led to increased expression of the phospholipid remodeling enzyme LPCAT3 and induced FASN-mediated lipogenesis, which promoted diet-induced obesity and insulin resistance. Conclusions These studies reveal an unexpected role for peroxisome-derived lipids in regulating LXR-dependent lipogenesis and suggest that activation of lipogenesis, combined with dietary lipid overload, exacerbates obesity and metabolic dysregulation. Keywords: Adipose tissue, Cholesterol, De novo lipogenesis, Diabetes, Plasmalogen, Liver X receptor Highlights * • Adipose-specific knockout of PexRAP promotes diet-induced obesity and insulin resistance. * • PexRAP inactivation decreases ethanolamine plasmalogens, peroxisome-derived phospholipids. * • PexRAP deletion alters adipocyte membrane phospholipid composition, causing cholesterol mislocalization and LXR activation. * • LXR activation induces FASN-mediated lipogenesis, leading to diet-induced obesity and metabolic dysregulation. 1. Introduction Obesity continues to rise globally, increasing risk and prevalence of diabetes, hypertension, and non-alcoholic fatty liver disease [[43]1]. Unhealthy expansion of adipose tissue in obesity promotes disease through complex and multifactorial mechanisms. Adipose tissue mass is maintained through a balance between lipolysis and lipid storage. Disruption of this balance can lead to storage of lipids in other tissues, such as liver and skeletal muscle, impairing their functions via lipotoxicity [[44]2]. The modern western diet contains a high proportion of calories from energy-rich fats, and in the setting of positive energy balance, these lipids are stored in adipose tissue, increasing susceptibility to obesity. In such a state of lipid excess, the role of lipogenesis, the endogenous synthesis of lipids from simple carbon precursors, is not obvious. Increasing evidence implicates peroxisomes, organelles specialized for lipid metabolism, including lipid synthesis, in metabolic regulation [[45]3]. Peroxisomes are versatile metabolic organelles involved in ether lipid biosynthesis, fatty acid oxidation, bile acid synthesis, and reactive oxygen species production and neutralization [[46]4]. The importance of peroxisomes to mammalian physiology is demonstrated by the deleterious phenotypes associated with Zellweger spectrum peroxisome biogenesis disorders [[47]5]. Ether lipids, such as plasmalogens, have recently been shown to regulate ferroptosis susceptibility, extend Caenorhabditis elegans lifespan, and function as cellular antioxidants [[48][6], [49][7], [50][8]]. Plasmalogens are also important for assembly of lipid raft microdomains, cholesterol-rich membrane regions involved in cellular signaling [[51]9]. Plasmalogen deficiency leads to disruption of lipid rafts and cholesterol mislocalization to a perinuclear compartment [[52]10]. However, the broader physiological roles of these peroxisome-derived lipids are unclear. Of note, how peroxisomal lipid synthesis affects metabolic homeostasis remains unknown. Peroxisomes use the glycolytic intermediate dihydroxyacetone phosphate (DHAP) as a substrate for lipid biosynthesis. When conditions favor the routing of carbon away from glycolysis and towards peroxisomal ether lipid synthesis, peroxisomal membrane protein 2 (encoded by Pxmp2) shuttles DHAP into peroxisomes for entry into the acyl DHAP pathway, localized in peroxisomes and the endoplasmic reticulum (ER), for production of ether lipids and other phospholipid species. In the peroxisomal component of this pathway, DHAP is converted into acyl-DHAP, which may subsequently have its acyl group exchanged for an alkyl group to yield alkyl-DHAP. In the final peroxisome-localized step of this pathway, the sn-1 carbonyl of acyl- or alkyl-DHAP is reduced by acyl/alkyl DHAP reductase [[53]4]. We previously reported that this protein is encoded by Dhrs7b and renamed the protein PexRAP (Peroxisomal Reductase Activating PPARγ) due to its role in generating partial agonists for the nuclear receptor PPARγ [[54]11]. PexRAP-catalyzed reduction of acyl- or alkyl-DHAP yields lysophosphatidic acid (LPA), a diacyl phospholipid precursor, or 1-O-Alkyl-G3P (AGP), an ether lipid precursor, respectively. PexRAP is localized to both ER and peroxisomes and appears to have distinct, location-dependent preferences for acyl-versus alkyl-DHAP in HeLa