Abstract Excessive accumulation of reactive oxygen and nitrogen species (RONS) and dysbiosis of intestinal microbiota are pivotal symptoms for inflammatory bowel disease (IBD) and its associated complications, such as intestinal fibrosis. This research introduces a probiotic inulin hydrogel loaded with polypyrrole (PPy) nanozymes and antifibrotic drug pirfenidone (PFD) (PPy/PFD@Inulin gel) designed for the concurrent amelioration of IBD and its fibrotic complication. Upon oral administration, the inulin gel matrix could extend the gastrointestinal residence time of PPy nanozymes and PFD, facilitating the efficient reduction of pro-inflammatory cytokine levels and enhancement of the intestinal epithelial barrier repair as well as the suppression of intestinal fibrosis through sustained RONS scavenging, modulation of gut microbiota and attenuation of the TGF-β/Smad signaling pathway to inhibit fibroblast proliferation. Notably, the PPy/PFD@Inulin gel demonstrated significant prophylactic and therapeutic efficacy in acute and chronic colitis as well as intestinal fibrosis induced by dextran sodium sulfate (DSS) in mouse models. Thus, the engineered ternary PPy/PFD@Inulin gel offered a pioneered paradigm for simultaneous reversal of IBD and its associated complications, such as intestinal fibrosis, in a single therapeutic regimen. Subject terms: Ulcerative colitis, Ulcerative colitis, Dysbiosis __________________________________________________________________ Because of its complex pathophysiology, the management of inflammatory bowel disease as well as its fibrotic complication has become a global challenge. Here, the authors show a probiotic inulin hydrogel loaded with polypyrrole (PPy) nanozymes and antifibrotic drug pirfenidone (PFD) (PPy/PFD@Inulin gel) designed for the concurrent amelioration of IBD and its fibrotic complication. Introduction Inflammatory bowel disease (IBD), encompassing Crohn’s disease (CD) and ulcerative colitis (UC), is a chronic autoimmune disorder that could affect the entire gastrointestinal tract^[40]1,[41]2. Due to its intricate pathophysiology, the management of IBD has become a global challenge^[42]3. Despite the incomplete understanding of its pathogenesis, it is widely accepted that IBD is associated with elevated oxidative stress, dysbiosis of intestinal microbiota, and compromised intestinal barrier function within the gut microenvironment^[43]4–[44]6. Unfortunately, standard clinical therapies, such as aminosalicylates, corticosteroids, and immunosuppressants, etc., offer only transient symptom relief without addressing the underlying intestinal barrier disruption and microbiota imbalance^[45]7. Consequently, these inflammatory microenvironments may progress to more severe conditions such as intestinal fibrosis, a complication characterized by thickened intestinal walls and reduced peristalsis, potentially culminating in intestinal stenosis^[46]8,[47]9. This progression would further lead to life-threatening intestinal obstruction or colorectal cancer (CRC)^[48]10,[49]11. Therefore, research aimed at simultaneously addressing IBD and its fibrotic complication is highly pursued. Activated macrophages and neutrophils in inflamed intestinal regions generate excess reactive oxygen and nitrogen species (RONS)^[50]12, resulting in oxidative protein damage, lipid peroxidation, DNA injury, and disruption of the intestinal epithelial barrier^[51]13,[52]14. Recently, nanozymes have garnered attention as promising candidates for IBD treatment owing to their unique ability to modulate redox homeostasis in RONS-related inflammation^[53]15. Various nanozymes with multiple enzymatic activities (including the CeO[2]^[54]16, NiCo[2]O[4]@PVP^[55]17, and Mn[3]O[4]^[56]18 nanozymes, among others) have been explored for IBD treatment. However, most reported nanozymes are composed of metals/metal oxides and exhibit instability as well as potential toxicity in acidic gastric conditions, raising concerns about their long-term safety^[57]19,[58]20. In addition, orally administered nanozymes have a short gastrointestinal residence time, necessitating repeated administration to achieve therapeutic efficacy. Moreover, solely targeting oxidative stress may be insufficient to address the complex pathogenesis of IBD or manage IBD-related complications like intestinal fibrosis. Increasing evidence highlights the crucial role of gut microbiota in maintaining intestinal homeostasis and its dysregulation in IBD^[59]21. Hence, modulating the gut microbiota has emerged as a popular therapeutic strategy for IBD, either through oral probiotic administration or by regulating molybdenum cofactors to inhibit the proliferation of Enterobacteriaceae^[60]22. Nonetheless, the existing IBD treatments seldom address both IBD and intestinal fibrosis simultaneously. Therefore, there is an urgent need to design a biocompatible platform with multifaceted capabilities to regulate oxidative stress, balance gut microbiota, repair intestinal barriers, and prolong intestinal retention time of therapeutic agents, enabling concurrent treatment of IBD and its fibrotic complications. Hydrogels with a porous three-dimensional matrix have been developed as multifunctional and biocompatible drug delivery platforms for various disease treatments^[61]23. Nevertheless, conventional hydrogels encounter significant challenges in addressing intestinal lesions, such as poor stability under low pH conditions, insufficient degradation resistance and complicated synthesis procedures^[62]24. Inulin, a polysaccharide dietary fiber sourced from chicory roots and Jerusalem artichokes, is renowned for its probiotic benefits^[63]25,[64]26 and has demonstrated potential in treating disorders like tumor^[65]25, non-alcoholic steatohepatitis^[66]27 and IBD^[67]28. This study introduces an oral-administered ternary inulin gel loaded with polypyrrole (PPy) nanozymes with excellent ROS scavenging capability and anti-fibrotic pirfenidone (PFD) drug for the treatment of IBD and intestinal fibrosis (Fig. [68]1a). The as-prepared PPy/PFD@Inulin gel, produced through a straightforward heating and cooling process, exhibited remarkable stability under acidic conditions. Upon oral administration, the intestinal retention effect of inulin gel would ensure the sustained release of PPy nanozymes and PFD within the gastrointestinal tract, thereby extending the therapeutic duration. The released PPy nanozymes could regulate oxidative stress by eliminating excessive RONS. On the other hand, the released PFD could inhibit the proliferation of fibroblasts and down-regulate TGF-β/Smad pathway. Furthermore, the inulin gel could selectively promote the proliferation of probiotics, aiding in the restoration of gut microbiota balance in IBD patients (Fig. [69]1b). Thus, the ternary PPy/PFD@Inulin gel could perform as a pioneered design for the concurrent treatment of IBD and associated fibrotic complication. Fig. 1. Schematic description of the fabrication process of PPy/PFD@Inulin gel and its mode of action in addressing IBD and intestinal fibrosis. [70]Fig. 1 [71]Open in a new tab a Preparation of PPy/PFD@Inulin gel. After oral administration of PPy/PFD@Inulin gel, the gel undergoes metabolism by the intestinal microbiota, enhancing the effectiveness of PPy and PFD in the gastrointestinal tract. b The PPy/PFD@Inulin gel exerts multifaceted regulation on the mechanisms associated with IBD and intestinal fibrosis. Results Preparation and characterization of ternary PPy/PFD@Inulin gel Firstly, PPy nanozymes were synthesized via an aqueous dispersion polymerization technique, achieving a diameter of 60 − 80 nm^[72]29 (Supplementary Fig. [73]1a-c). The surface analysis of PPy nanozymes revealed a homogeneous distribution of carbon and nitrogen elements, with no detectable metallic elements, thereby classifying them as non-metallic nanozymes (Supplementary Fig. [74]1d and e). Supplementary Fig. [75]2a, b shown that PPy nanozymes has good water dispersibility. Next, the obtained PPy nanozymes and PFD drug were incorporated into a heated inulin solution, forming a ternary PPy/PFD@Inulin gel upon cooling to ambient temperature. As shown in Fig. [76]2a, the gel exhibited a black coloration attributable to the presence of PPy nanozymes, and the successful synthesis of PPy/PFD@Inulin gel was also confirmed by Fourier transform infrared spectroscopy (FTIR) and Zeta potential characterizations (Supplementary Fig. [77]3a, b). All four gel variants possessed typical porous hydrogel structures with no significant morphological differences regardless of the inclusion of PPy nanozymes and PFD molecules. Satisfyingly, the PPy/PFD@Inulin gel exhibited outstanding injectability and was capable of traversing syringes of varying sizes, even with a minimum needle diameter of only 0.4 mm, which is crucial for subsequent oral administration. Furthermore, the storage modulus (G’) of all hydrogels surpassed the loss modulus (G”), indicating that the moderate incorporation of PPy nanozymes and PFD molecules did not adversely affect the hydrogel performance of inulin while maintaining their excellent shear-thinning behaviors (Fig. [78]2b and Supplementary Fig. [79]4a–c). Fig. 2. Synthesis and characterization of PPy/PFD@Inulin gel. [80]Fig. 2 [81]Open in a new tab a Four distinct groups of inulin-based gels were depicted in various aspects: visual appearance, SEM images, and photographs illustrating their injectability. b Dynamic rheological tests were conducted on these four groups, measuring both the elastic modulus (G’) and the viscous modulus (G”). c In vitro degradation kinetics of the PPy/PFD@Inulin gel were studied under different pH levels and the presence of Bifidobacterium longum. d The release profiles of PFD were assessed at varying pH levels at 37 °C. e, f Cy5.5-PPy nanozymes and Cy5.5-PPy/PFD@Inulin gel were administered orally to mice. The gastrointestinal tract was observed for (f) 24 h and (e) the mean fluorescence intensity in the colon was quantified. Data are presented as mean ± SD (n = 3 biologically independent samples for (c–e)). In a, the representative SEM images are shown (at least three images were taken for each sample). In f, images from one representative experiment of three independent experiments are presented. Statistical analysis was evaluated with two-tailed Student’s t tests. p > 0.05 (n.s.), *p < 0.05, **p < 0.01, ***p < 0.001. The heterogeneity in pH levels across the gastrointestinal tract poses a substantial challenge for the oral delivery of pharmaceuticals. Generally, the pH ranges from 1.0-3.0 in the stomach, 6.0-7.5 in the small intestine, 5.0-7.0 in the proximal colon, and then increases to7.0-8.0 in the rectum^[82]30. Therefore, four distinct pH solutions (1.5, 6.0, 7.4 and 8.0) were used to evaluate the stability of orally administered PPy/PFD@Inulin gel. As illustrated in Supplementary Fig. [83]5a, b, the diameter of PPy nanozymes exhibited no significant alterations, indicating their excellent stability across varying pH levels. Satisfactorily, after soaking the PPy/PFD@Inulin gel in phosphate-buffered saline (PBS) with different pH values to mimic the gastrointestinal environment, scanning electron microscopy (SEM) revealed that gel’s microstructure remained intact, while FTIR and X-ray diffraction (XRD) analyzes confirmed that the composition and structure of the gel were unaltered, as depicted in Supplementary Fig. [84]6a–c. The PPy/PFD@Inulin gel demonstrated greater susceptibility to disruption under acidic conditions (pH = 1.5) than at other pH levels. However, the degradation rate remained below 5% after 6 h and below 15% after 12 h (Fig. [85]2c), which were beneficial for escorting the PPy/PFD@Inulin gel to intestine as gastric emptying typically occurred within 3-4 h. Although inulin itself cannot be well-digested or absorbed in the stomach and small intestine, it would undergo fermentation and degradation by beneficial bacteria in the colon^[86]31. As shown in Fig. [87]2c and Supplementary Fig. [88]7a–c, Bifidobacterium longum (BL) could utilize PPy/PFD@Inulin gel to enhance its growth, thereby increasing lactic acid production. Additionally, the resulting metabolites created an acidic environment that would accelerate gel degradation in the presence of BL. Overall, the PPy/PFD@Inulin gel displayed exceptional stability across different pH levels, confirming its suitability for oral therapeutic applications in animal models. Next, the release kinetics of PFD molecules were further investigated (Fig. [89]2d and Supplementary Fig. [90]8a, b). The free PFD group exhibited complete active pharmaceutical ingredient (API) release within 2 h, whereas the PPy/PFD@Inulin gel demonstrated a prolonged and complete release within 24 h, indicating that inulin gel could function effectively as a drug carrier to extend the release duration of PFD molecules. Previous studies have shown that gel-state polysaccharide fibers would prolong gastric emptying (owing to thickening), adhere to the intestinal mucosa, and extend intestinal residence time^[91]32. A lap-shear adhesion test was conducted to assess the bio-adhesive properties of PPy/PFD@Inulin gel (Supplementary Fig. [92]9a, b). Interestingly, the PPy/PFD@Inulin gel adhered to pig skin tissues and withstood greater deformation compared to PPy nanozymes, attributed to its gel form. Our study confirmed that oral administration of Cy5.5-PPy/PFD@Inulin gel resulted in a longer residence time in the colon than Cy5.5-PPy nanozymes (Fig. [93]2e, f). These findings validated that the PPy/PFD@Inulin gel could contribute to the sustained release of PPy nanozymes and PFD in the intestinal tract, thereby prolonging the therapeutic efficacy. In vitro and in vivo RONS scavenging and biocompatibility characterization Elevated RONS levels in inflamed intestinal tracts have become a focal point in the pathophysiology of IBD. PPy nanozymes, due to the alternation of π-electron delocalization in single and double carbon-carbon bonds, can donate electrons or active hydrogen atoms to neutralize free radicals, thereby bestowing PPy nanozymes with peroxidase (POD) and superoxide dismutase (SOD) activities^[94]33. Particularly, at a low concentration of 60 μg/mL, PPy nanozymes exhibited DPPH and ABTS clearance rates of 59.1 ± 0.4% and 77.7 ± 3.7%, respectively (Fig. [95]3a, b). In addition, at a treatment concentration of 40 μg/mL, the clearance rate for O[2]−^- reached 80%. Employing cyclic voltammetry (CV) to evaluate the H[2]O[2]-scavenging capacity of PPy nanozymes revealed a reduction peak and increased current density at −0.6 V when a glassy carbon (GC) electrode coated with PPy nanozymes was immersed in a PBS solution containing H[2]O[2] and scanned in the negative direction, indicating H[2]O[2] was reduced and validating the H[2]O[2] scavenging capacity of PPy nanozymes (Fig. [96]3c, d)^[97]34. Moreover, the RONS scavenging capacities remained stable across a range of pH levels from weakly acidic to alkaline, as well as in simulated gastrointestinal fluid (Fig. [98]3e and Supplementary Fig. [99]10). Encouraged by the superior RONS scavenging capacities of PPy nanozymes, the antioxidant activity of PPy/PFD@Inulin gel was then assessed, showing no significant difference in antioxidant capacity between PPy nanozymes and PPy/PFD@Inulin gel at equivalent concentrations (Supplementary Fig. [100]11a–d). Furthermore, the antioxidant capacity in gel state is largely unaffected by varying pH values and simulated intestinal and gastric conditions (Supplementary Fig. [101]12a–c). Hence, the ternary PPy/PFD@Inulin gel demonstrated stable and outstanding RONS-scavenging properties across various pH environments. Fig. 3. In vitro antioxidant effect of PPy/PFD@Inulin gel and cell protection from ROS-induced damage. [102]Fig. 3 [103]Open in a new tab a DPPH, (b) ABTS and (c) O[2]·^- scavenging efficacy. d CVs of the modified GC electrode with PPy nanozymes as prepared in the presence of 5.0 × 10^−3 M H[2]O[2] in N[2]-saturated 0.01 M PBS (pH 7.4) and bare GC electrode in PBS (H[2]O[2]). e PPy nanozymes retention activity after treatment in a simulated gastrointestinal environment was retained. f Viability of NCM460 cells. g Fluorescent images of calcein-AM/PI co-stained NCM460 cells and (h) corresponding cell viability. i NCM460 cells stained with DCFH-DA and (j) the corresponding mean fluorescence intensity. Data are presented as mean ± SD (n = 3 biologically independent samples for (a–c, e, f, h, and j)). Images from one representative experiment of three independent experiments are presented (g and i). Statistical analysis was performed using one-way ANOVA. p > 0.05 (n.s.), *p < 0.05, **p < 0.01, ***p < 0.001. The cytotoxicity assessment of PPy/PFD@Inulin gel was performed by using human colon mucosal epithelial cells (NCM460) (Fig. [104]3f and Supplementary Fig. [105]13a and b). Notably, even at elevated concentrations of 400 μg/mL PPy nanozymes and 1 mg/mL PFD, the cell viability remained both above 85% after 24 and 48 h of incubation, emphasizing their favorable biocompatibility. The cytoprotective effect of PPy nanozymes under H[2]O[2]-induced oxidative stress was then investigated by using a typical Live/Dead fluorescence assay (Fig. [106]3 g). Unlike the significant cell mortality seen in the 3 mM H[2]O[2] treated group, negligible dead cells could be observed in the group treated with 3 mM H[2]O[2] + 400 μg/mL PPy nanozymes, highlighting the superior cytoprotective capability of PPy nanozymes, which was further confirmed by the quantitative cell survival rate analysis (Fig. [107]3 h and Supplementary Fig. [108]14). Additionally, a marked reduction in green fluorescence from the oxidation of 2,7-dichlorodihydrofluorescein diacetate (DCFH-DA) was observed in the presence of PPy nanozymes, further demonstrating their eye-catching ROS scavenging capacity, which also was validated by the H[2]O[2] and lipopolysaccharide (LPS) stimulation assay (Fig. [109]3i, j and Supplementary Fig. [110]15a and b). Biocompatibility and biodistribution of PPy/PFD@Inulin gel Subsequently, a hemolysis test was conducted, revealing that the hemolysis rate remained below 5% across all concentrations of PPy nanozymes, demonstrating excellent hemocompatibility (Supplementary Fig. [111]16). Motivated by its favorable in vitro biocompatibility, the in vivo biocompatibility of PPy/PFD@Inulin gel was further assessed. No significant alterations were detected in hematological or biochemical parameters after oral administration of the PPy/PFD@Inulin gel for 4, 7, 15 and 30 days (Supplementary Fig. [112]17a–c), and no histopathological abnormalities or organ damage were observed (Supplementary Fig. [113]17d). Furthermore, the biological distribution of hydrogel components was assessed using Cy5.5-labeled PPy/PFD@Inulin gel post oral administration. As depicted in Supplementary Fig. [114]17e, the fluorescent hydrogel predominantly localized in the intestine, with a peak fluorescence intensity at 8 h and detectable levels persisting up to 24 h, indicating the extended retention of PPy/PFD@Inulin gel in the colon, which was beneficial for prolonging its therapeutic efficacy. Investigation of the PPy/PFD@Inulin gel effect on intestinal physiology As depicted in Fig. [115]4a, mice received oral administration of PPy/PFD@Inulin gel on days 0, 1, 3, 5, and 7, with fecal specimens collected on day 9. Throughout the 9-day timeframe, the experimental mice exhibited a reduction in food intake relative to the control group, attributed to the gastric volume occupation by the hydrogel, thereby diminishing food consumption (Fig. [116]4b). Body weight analysis revealed no significant difference between the PPy/PFD@Inulin gel-treated mice and the normal group (Fig. [117]4c). The capability of PPy/PFD@Inulin gel to modulate the abundance of gut microbiota in normal mice was studied using 16S rRNA gene sequencing. Alpha diversity metrics including observed species, Simpson, and Shannon indices, indicated an enhancement in both the abundance and diversity of gut microbiota following PPy/PFD@Inulin gel administration (Fig. [118]4d–f). The Venn diagram in Fig. [119]4g illustrated the augmented microbial community richness resulting from the PPy/PFD@Inulin gel treatment. Principal Coordinate Analysis (PCoA) based on Bray-Curtis distances also revealed partial overlap yet slight differentiation between operational taxonomic units (OTUs) from PPy/PFD@Inulin gel-treated mice and those from the healthy control group (Fig. [120]4h). Furthermore, at the phylum level, there was a significant proliferation of Verrucomicrobia in the treated mice, which was consistent with the genus level heatmap, showing a notable increase in Akkermansia abundance (Fig. [121]4i, j). This was aligned with previous research indicating that inulin administration significantly boosted Akkermansia levels, which were linked to the maintenance of intestinal barrier function^[122]25,[123]35. In a word, oral administration of PPy/PFD@Inulin gel can modulate gut microbiota composition, notably enhancing the abundance of beneficial bacteria Akkermansia in mice. Fig. 4. Effect of hydrogel on intestinal physiology. [124]Fig. 4 [125]Open in a new tab a Roadmap for experimental design. b The amount of feed loss in 9 days. c In 9 days, the body weight of mice was recorded. d–f Estimation of the gut microbial abundance and indices of community α-diversity determined by the number of observed OTUs (d), Simpson (e), and Shannon (f). g Venn diagram illustrates the numbers of ASV/OTU in the control and PPy/PFD@Inulin gel. h Beta diversity is illustrated of the PCoA, based on Bray-Curtis distances. i Composition analysis of gut microbiota at the phylum level in different groups. j Heat map of intestinal microorganisms in mice at genus level. Data are presented as mean ± SD (n = 5 biologically independent samples for (c–j)). Statistical analysis was evaluated with two-tailed Student’s t tests. p > 0.05 (n.s.), *p < 0.05, **p < 0.01, ***p < 0.001. Prophylactic treatment of DSS-induced ulcerative colitis Leveraging the superior RONS-scavenging efficacy and excellent biocompatibility of PPy/PFD@Inulin gel, its prophylactic therapeutic effects were evaluated in a model of DSS-induced ulcerative colitis. The optimal dosage for PPy nanozymes was established as 40 mg/kg (Supplementary Fig. [126]18a-f). PPy/PFD@Inulin gel was then orally administered on the 1st, 3rd, 5th, and 7th days, with euthanasia on the 9th day (Fig. [127]5a). According to Fig. [128]5b, while all DSS-treated mice initially experienced weight loss, those in the three groups receiving PPy nanozymes exhibited weight recovery starting from day 4. It is noteworthy that PFD demonstrated minimal efficacy in this IBD model. Ultimately, the body weights of mice treated with PPy@Inulin gel and PPy/PFD@Inulin gel were most comparable to those of healthy controls, attributable to the sustained therapeutic effect facilitated by the inulin hydrogel. As successful induction of UC in mice would result in increased disease activity index (DAI) scores, the DAI values of PPy/PFD@Inulin gel treated mice returned to normal, suggesting a promising prophylactic effect (Supplementary Fig. [129]19). Colon photographs and length measurements on day 9 revealed that the average colon length of mice in DSS group was only 6.78 cm, whereas it was restored to 9.22 cm in the PPy/PFD@Inulin gel-treated group, comparable to that of normal mice (Fig. [130]5c, d). Fig. 5. Prophylactic effects of PPy/PFD@Inulin gel on DSS-induced colitis by oral administration. [131]Fig. 5 [132]Open in a new tab a Experimental design of DSS-induced IBD model mice. b Daily changes in body weight were recorded throughout the experiment. c Colon length of mice with indicated treatment on day 9. d Digital photos of the colons of each group of mice on day 9. e H&E staining of representative mouse colon tissue. f MPO activity in supernatant after homogenization of mouse colon tissue. g-i Quantitative analysis of pro-inflammatory factors (TNF-α, IL-1β, and IL-6) in colon tissue. j Immunohistochemical staining for the expression of TNF-α, IL-1β, and IL-6 in colonic tissue. Data are presented as mean ± SD (n = 5 biologically independent samples for (b and c), n = 3 biologically independent samples for (f–i)). The representative images in e and j are shown from three independent mice. Statistical analysis was performed using one-way ANOVA. p > 0.05 (n.s.), *p < 0.05, **p < 0.01, ***p < 0.001. Unlike the pathological phenomena including reduced goblet cells, crypt distortion, and extensive inflammatory cell infiltration revealed by H&E staining of DSS-treated colons, no significant disruption of the intestinal micro-barrier was observed in the colons post-treatment with the PPy/PFD@Inulin gel (Fig. [133]5e). Myeloperoxidase (MPO), predominantly expressed by neutrophils, serves as a crucial mediator of oxidative stress and is thus frequently utilized as a biomarker for IBD evaluation^[134]36. As shown in Fig. [135]5f, MPO activity approached to nearly normal level following the oral administration of PPy/PFD@Inulin gel, significantly lower than that observed in the DSS-induced inflammatory mice. Moreover, mice treated with PPy/PFD@Inulin gel exhibited cytokine expression levels akin to the normal control group, including TNF-α, IL-1β, and IL-6, in stark contrast to the DSS-treated group (Fig. [136]5g–i). Immunohistochemical analysis revealed elevated pro-inflammatory cytokine levels in the DSS-treated group, which normalized subsequent to PPy/PFD@Inulin gel administration (Fig. [137]5j). These findings collectively substantiated the in vivo prophylactic effect of orally administered PPy/PFD@Inulin gel in mitigating colitis. Delayed treatment of DSS-induced ulcerative colitis Encouraged by its promising prophylactic efficacy, the therapeutic potential of PPy/PFD@Inulin gel in the delayed treatment of acute colitis was further assessed. As shown in Fig. [138]6a, colitis in mice was induced by substituting drinking water with 3% DSS solution for the initial six days, followed by oral gavage on days 7, 9, 11, and 13, culminating in euthanasia on day 15. During the initial DSS administration period, the mice experienced a gradual weight loss of approximately 10% of their original body weights (Fig. [139]6b). Mice in the three groups treated with PPy nanozymes formulations exhibited weight recovery post the first dose on day 7. The DAI was recorded throughout the experiment (Supplementary Fig. [140]20), showing a reduction in DAI scores for the mice receiving PPy/PFD@Inulin gel, nearly reaching normal level similar to those observed in the prophylactic treatment study. The average colon length in mice subjected to 15 days of DSS treatment was significantly reduced, measuring only 6.64 ± 0.23 cm. Notably, both the PPy@Inulin gel (8.4 cm) and PPy/PFD@Inulin gel (8.42 cm) demonstrated substantial therapeutic benefits, attributed to prolonged retention by the inulin hydrogel, and with the therapeutic efficacy of PPy nanozymes comparable to that of clinically used 5-aminosalicylic acid (5-ASA) (Fig. [141]6c, d). H&E staining of intestial tissues showed that the PPy/PFD@Inulin gel-treated group exhibited the negligible colonic injury with intact goblet cells, regular crypt morphology, and an unimpaired intestinal mucous layer (Fig. [142]6e). Moreover, following PPy/PFD@Inulin gel treatment, colon tissues exhibited significantly reduced levels of MPO, TNF-α, IL-1β, and IL-6 compared to the DSS-treated groups, with values closely resembling those of normal mice (Fig. [143]6f–i). Fig. 6. PPy/PFD@Inulin gel alleviated DSS-induced colitis in a delayed treatment mode. [144]Fig. 6 [145]Open in a new tab a Experimental design of DSS-induced IBD model mice. b During the entire experiment, the changes of body weight were recorded every 2 days. c Colon length of mice with indicated treatment on day 15. d Digital photographs of colon of each group of mice on day 15. e H&E staining of representative mouse colon tissue. f MPO activity in supernatant after homogenization of mouse colon tissue. g-i Quantitative analysis of TNF-α, IL-1β, and IL-6 in colon tissue. Data are presented as mean ± SD (n = 5 biologically independent samples for (b and c), n = 3 biologically independent samples for (f–i)). The representative images in e are shown from three independent mice. Statistical analysis was performed using one-way ANOVA. p > 0.05 (n.s.), *p < 0.05, **p < 0.01, ***p < 0.001. PPy/PFD@Inulin gel repairs the intestinal barrier and regulates flora Next, the underlying reparative mechanism of PPy/PFD@Inulin gel on compromised colonic epithelial barrier and gut microbiota were investigated. Damage to intestinal mucosal barrier typically results in elevated serum FITC-dextran levels post-gavage. By orally administering FITC-dextran to mice across different experimental groups and subsequently quantifying serum FITC-dextran using fluorescence imaging and a microplate reader, the DSS group exhibited significantly higher fluorescence intensity in the colonic region compared to the control group (Fig. [146]7a, b). Intervention with PPy/PFD@Inulin gel markedly decreased colonic permeability to FITC-dextran. Microplate reader measurements corroborated these findings, indicating that serum FITC-dextran levels in PPy/PFD@Inulin gel-treated mice approached those of the control group (Fig. [147]7c). Zonula Occludens-1 (ZO-1) and occludin proteins are critical components of intercellular tight junctions and play pivotal roles in maintaining the structure, function, and barrier integrity of the intestinal epithelium^[148]35. Western blotting analysis (Supplementary Fig. [149]21a–c) revealed diminished expression of ZO-1 and occludin in colitis-afflicted mice, indicative of compromised tight junctions. Notably, PPy/PFD@Inulin gel treatment significantly upregulated these protein levels. Immunofluorescence staining and quantitative fluorescence analysis (Fig. [150]7d and Supplementary Fig. [151]22a, b) further confirmed reduced ZO-1 and occludin expression in the DSS group, with the gel effectively enhancing their expression, thereby facilitating intestinal barrier restoration. Fluorescent in situ hybridization (FISH) imaging demonstrated high Muc2 protein levels, a major component of intestinal mucus barrier, in the control group, which effectively shielded epithelial cells from bacterial invasion (Supplementary Fig. [152]23). In contrast, the DSS-treated group exhibited significantly increased bacterial invasion. Fig. 7. The repair effect of PPy/PFD@Inulin gel on colon epithelium and intestinal flora regulation. [153]Fig. 7 [154]Open in a new tab a, b Fluorescence images and fluorescence quantification detected by imaging of small animals 2 h after oral administration of 4 kDa FITC-dextran. c Concentration of FITC-dextran in serum of mice. d Immunofluorescence staining ZO-1 (green) and occludin (red) proteins, and the nucleus was stained with DAPI (blue). e, f Estimation of the gut microbial abundance by the number of OTUs (e) and indices of community α-diversity determined by Shannon (f). g Composition analysis of gut microbiota at the phylum level in different experimental groups. h, i Relative abundance of gut microbes at genus level in mice (h) and heatmap showing normalized Z-score values of microbial abundance at genus level (i). Data are presented as mean ± SD (n = 3 biologically independent samples for (b and c), n = 4 biologically independent samples for (e–i)). The representative images in d are shown from three independent mice. Statistical analysis was performed using one-way ANOVA (b and c) and statistical analysis was evaluated with two-tailed Student’s t tests (e and f). p > 0.05 (n.s.), *p < 0.05, **p < 0.01, ***p < 0.001. Furthermore, the efficacy of PPy/PFD@Inulin gel in modulating the gut microbiota during delayed treatment of DSS-induced colitis was investigated by analyzing alterations in the intestinal microbiome through 16S rRNA gene sequencing. Parameters including the observed species, Shannon and Simpson’s diversity indicated that oral administration of PPy/PFD@Inulin gel significantly increased the abundance and diversity of the intestinal microbial community in DSS-treated mice (Fig. [155]7e, f and Supplementary Fig. [156]24). In the feces of DSS-treated mice, Firmicutes and Bacteroides were predominant, indicating a significant imbalance in the flora^[157]37. In addition, Proteobacteria increased because of their advantage in utilizing host nitrogen, resulting in an increased abundance of Enterobacteriaceae in colitis mouse feces^[158]38. Following the PPy/PFD@Inulin gel treatment, the imbalance of intestinal flora was significantly improved (Fig. [159]7g). Further analysis at the genus level, along with the corresponding heat maps (Fig. [160]7h, i), oral administration of PPy/PFD@Inulin gel substantially increased the abundance of Akkermansia. Additionally, the populations of Coprococcus and Oscillospira in the murine gut flora were restored to levels similar to those in healthy mice. Both bacteria genera contribute to short-chain fatty acids (SCFAs) production and intestinal regulation^[161]39,[162]40. Overall, the 16S rRNA sequencing results indicated that PPy/PFD@Inulin gel treatment could restore the abundance and diversity of the intestinal microbiota in mice to normal levels by sustaining the intrinsic regulatory functions by inulin. Analysis of transcriptome changes after PPy/PFD@Inulin gel treatment using RNA-seq To further elucidate the protective efficacy of PPy/PFD@Inulin gel on DSS-induced colitis in murine models, RNA sequencing (RNA-seq) was employed for a comprehensive quantitative assessment of the gene expression landscape in colonic tissues. Initially, the heatmap depicted in Fig. [163]8a strikingly contrasts the gene expression profiles between the DSS-treated and PPy/PFD@Inulin gel-treated groups. Principal Component Analysis (PCA) further clustered the samples, distinctly segregating the DSS group from both the control and PPy/PFD@Inulin gel groups (Fig. [164]8b). Volcano plot and Venn analysis identified 511 differentially expressed genes (DEGs) (228 upregulated, 283 downregulated) between the PPy/PFD@Inulin gel and DSS-treated groups (Fig. [165]8c and Supplementary Fig. [166]25). Additionally, 981 DEGs (451 upregulated, 530 downregulated) were delineated between the control and DSS groups, while 211 DEGs (57 upregulated, 154 downregulated) were found between the control and PPy/PFD@Inulin gel groups (Supplementary Figs. [167]25 and [168]26a, b). To ascertain their functional relevance, Gene Ontology (GO) analysis was conducted on DEGs between the PPy/PFD@Inulin gel and DSS groups, revealing significant shows the difference of infiltrated immune cells among control group, DSS group and involvement in biological signaling pathways such as neutrophil migration, bacteria response, and inflammatory response (Fig. [169]8d)^[170]41. KEGG pathway analysis further indicated that these DEGs are implicated in inflammatory pathways including the IL-17 signaling pathway, cytokine-cytokine receptor interaction, TNF and JAK/STAT signaling pathways (Fig. [171]8e)^[172]42. The JAK/STAT pathway plays a crucial role in modulating both adaptive and innate immune responses, particularly in IBD^[173]43. The ImmuCC algorithm was employed to profile the infiltration of 23 types of immune cell types within the colonic tissues of these three groups. The bar graph in Fig. [174]8f and heatmap in Fig. [175]8g illustrated the differential abundance of immune cell infiltrates among the groups. Compared to the healthy control and PPy/PFD@Inulin gel groups, the DSS group showed elevated levels of activated dendritic cells, M0 macrophages, and M1 macrophages in the colonic mucosa. Fig. 8. RNA sequencing analysis of colon tissues treated with PPy/PFD@Inulin gel. [176]Fig. 8 [177]Open in a new tab a Heat map of the total differential metabolite clustering in the DSS group and PPy/PFD@Inulin gel group. b PCA of the colon tissue gene expression values in the Control DSS, and PPy/PFD@Inulin gel. c Volcano plot of the differential genes in the colon tissues of the Control DSS, and PPy/PFD@Inulin gel. d GO enrichment analysis of DEGs. BP represents the “biological process”; CC represents the “cellular component”; MF represents the “molecular function”. e KEGG pathway enrichment analysis of DEGs. f The histogram PPy/PFD@Inulin gel group. g Heat map of the difference of infiltrating immune cells among control group, DSS group and PPy/PFD@Inulin gel group. (n = 4 biologically independent samples for (a, b), n = 5 biologically independent samples for (c and d), n = 3 biologically independent samples for (f and g)). Statistical analysis was evaluated with two-tailed Student’s t tests. p > 0.05 (n.s.), *p < 0.05, **p < 0.01, ***p < 0.001. Intestinal fibrosis reversion by oral administration of PPy/PFD@Inulin gel Intestinal fibrosis, a resultant complication linked to chronic IBD, manifests as a thickened intestinal wall and reduced peristalsis, posing a heightened risk of severe intestinal stenosis and potentially lethal intestinal obstruction. Inspired by the promising therapeutic efficacy of PPy/PFD@Inulin gel in addressing IBD via RONS scavenging and microbiota modulation, a chronic colitis model induced through repeated DSS cycles was established to investigate the capability of PPy/PFD@Inulin gel for simultaneously reversing IBD and its fibrotic complication (Fig. [178]9a). As shown in Fig. [179]9b, a lower dose of 1.5% DSS solution had minimal impact on mouse body weight, whereas a higher dose of 2.5% DSS led to significant body weight loss. Remarkably, treatment with PPy/PFD@Inulin gel effectively restored the body weight of mice to normal levels. Upon sacrifice on day 35, examination of mouse colons revealed distinct differences. Specifically, DSS-treated mice exhibited shorter and thicker colons compared to the normal group, with an average colon length of merely 6.52 cm. However, oral administration of PPy/PFD@Inulin gel (7.88 cm) restored colon length and thickness to levels comparable to the control group (8.12 cm) (Fig. [180]9c, d). Subsequent examination of H&E-stained colon tissue cross sections and colonic damage scores^[181]44 revealed substantial inflammatory cell infiltration in the DSS-treated group, particularly in the submucosa, in contrast to the intact crypt structures observed in the normal group (Fig. [182]9e, f). Quantitative measurements of H&E-stained sections using CaseViewer software 2.4 showed significantly increased thickness in the muscularis propria, muscularis mucosa, and intestinal wall of the DSS group (Fig. [183]9g–i). Masson’s trichrome and immunohistochemical staining were used to evaluate fibrosis in mice with chronic colitis. The results illustrated that PPy/PFD@Inulin gel exhibited a protective effect against fibrous collagen deposition (Fig. [184]9j). Although single PFD treatment moderately mitigated fibrosis, its efficacy in alleviating intestinal damage was limited due to persistent chronic inflammation. Gratifyingly, with the synergistic assistance of RONS scavenging PPy nanozymes and gut microbiota-modulating inulin hydrogel, oral administration of PPy/PFD@Inulin gel could not only prevent intestinal damage induced by RONS but also alleviate intestinal fibrosis. Fig. 9. Therapeutic effects of PPy/PFD@Inulin gel on DSS-induced fibrosis model. [185]Fig. 9 [186]Open in a new tab a Experimental design of a mouse fibrosis model induced by DSS. b Detailed weight changes were recorded every 5 days. c Colon length of mice on day 35. d Digital photographs of colon on day 35. e H&E staining of representative mouse colon tissue. f The colonic damage scores of mice. g Wall thickness of colon in mice with DSS-induced fibrosis. h Thickness of muscularis propria and (i) thickness of muscularis mucosa. j Representative images of colon sections stained with Masson’s trichrome in the eight groups: ECM deposition (blue area). Representative immunohistochemical staining for α-SMA and TGF-β in colon sections. Data are presented as mean ± SD (n = 5 biologically independent samples for (b and c), n = 3 biologically independent samples for (f), n = 4 biologically independent samples for (g-i)). The representative images in e and j are shown from three independent mice. Statistical analysis was performed using one-way ANOVA. p > 0.05 (n.s.), *p < 0.05, **p < 0.01, ***p < 0.001. Next, a comprehensive analysis of the antifibrotic mechanism was further performed. One potential antifibrotic mechanism of PFD is its capacity to attenuate colon fibroblast proliferation without inducing cytotoxicity. Incorporating 5-ethynyl-2’-deoxyuridine (EdU) demonstrated that the PPy/PFD@Inulin gel could inhibit the proliferation of human colon fibroblasts (CCD-18Co) (Fig. [187]10a and Supplementary Fig. [188]27). The integrity of cells was assessed using a standard lactate dehydrogenase (LDH) release assay. Negligible cytotoxic effects were observed with PFD incubation at a concentration as high as 1 mg/mL during the initial 24 h, with only slight cellular damage after 48 h incubation (Fig. [189]10b). Subsequently, Live/Dead fluorescence assays indicated a reduction in cell proliferation following treatment with gradient concentrations of PFD, which was accompanied by a decrease in cell size and cytoplasm volume (Fig. [190]10c and Supplementary Fig. [191]28). Western blot analysis was then utilized to examine the expression of fibrosis-related proteins, including α-smooth muscle actin (α-SMA) and TGF-β1, in the colons of mice with fibrosis. In comparison to the control group, these proteins were upregulated in the DSS-treated group, whereas treatment with the PPy/PFD@Inulin gel reduced their expression levels (Fig. [192]10d–f), indicating that PPy/PFD@Inulin gel blocked the TGF-β/Smad signaling pathway. Similar to previously reported anti-fibrotic mechanism of PFD^[193]45, Fig. [194]10g provided an overview of the potential modulation of TGF-β/Smad pathway by the PPy/PFD@Inulin gel. Upon TGF-β ligand binding to its receptor, the type II receptor is activated, which subsequently phosphorylates the type I receptor. Following the phosphorylation of the type I receptor, Smad3 is specifically targeted and phosphorylated, forming a transcriptional complex with Smad4 that translocates to the nucleus to regulate the transcription activity of various genes. Therefore, these data confirmed that the obtained PPy/PFD@Inulin gel could inhibit the activated TGF-β/Smad pathway in colitis-related intestinal fibrosis. Fig. 10. The mechanism of PPy/PFD@Inulin gel for inhibiting intestinal fibrosis. [195]Fig. 10 [196]Open in a new tab a Proliferation of CCD-18Co cells treated with different groups in the EdU assay. b Relative LDH activity of CCD-18Co cells. c Fluorescent images of CCD-18Co cells co-stained with calcein-AM/PI dyes. d Representative Western blot images. e, f Quantitative Western blot analyzes were performed. g Schematic mechanism of PPy/PFD@Inulin gel for inhibiting intestinal fibrosis. Data are presented as mean ± SD (n = 3 biologically independent samples for (b, e, and f)). Images from one representative experiment of three independent experiments are presented (a and c). Statistical analysis was performed using one-way ANOVA. p > 0.05 (n.s.), *p < 0.05, **p < 0.01, ***p < 0.001. Discussion IBD is a complex inflammatory disorder modulated by numerous variables. It is characterized by increased oxidative stress and dysbiosis of the gut microbiota, leading to the perturbation of intestinal microenvironment. Consequently, this perturbation instigates recurrent inflammation, ECM deposition, and thickening of the intestinal wall, ultimately culminating in intestinal fibrosis, a prevalent complication of IBD. In this study, a PPy/PFD@Inulin gel was developed to prevent and alleviate the detrimental effects associated with IBD and intestinal fibrosis. Notably, the remarkable injectability of PPy/PFD@Inulin gel endows its rapid delivery to the inflamed areas of intestines through oral administration. The intestinal retention properties of PPy/PFD@Inulin gel contributed to the sustained release of PPy nanozymes and PFD molecules from the intestines, thereby prolonging their therapeutic efficacy. The PPy/PFD@Inulin gel exhibited effective RONS clearance along with a substantial reduction of pro-inflammatory cytokine secretion. Particularly, PPy/PFD@Inulin gel significantly alleviated the symptoms of acute DSS-induced IBD symptoms, as demonstrated by rapid body weight recovery, reduced mucosal injury in colonic tissues, diminished MPO activity and pro-inflammatory cytokine levels. Moreover, the PPy/PFD@Inulin gel effectively upregulated the expression of tight junction proteins in colonic tissues, thereby fortifying the intestinal barrier. It also modulated the gut microbiota, increasing the prevalence of beneficial genera such as Coprococcus and Oscillospira, which contribute to the production of butyrate, a vital SCFAs instrumental in intestinal barrier repair. In addition, KEGG analysis revealed that the DEGs between the PPy/PFD@Inulin gel-treated and IBD groups were predominantly associated with immunoregulatory and metabolic pathways, such as IL-17 signaling pathway, cytochrome-cytochrome receptor interactions, TNF and JAK/STAT signaling pathway. This study showed the therapeutic potential of PPy/PFD@Inulin gel in regulating intestinal immunity and microbiota composition. Furthermore, the PPy/PFD@Inulin gel markedly inhibited the proliferation and viability of colonic fibroblasts and attenuated the expression of proteins related to the TGF-β1/Smad3 pathway, including TGF-β1 and α-SMA. Notably, it significantly alleviated chronic colitis induced by DSS, as reflected by rapid weight recovery, diminished mucosal damage in the colonic tissue, and decreased intestinal fibrosis severity. In conclusion, considering the elevated RONS levels, the disruption of microbial communities, and related complications in the intestinal microenvironment associated with gastrointestinal diseases, a ternary PPy/PFD@Inulin gel was successfully developed to prevent and mitigate adverse effects related to IBD and intestinal fibrosis. The results of the above experiments provided compelling evidence of the robust therapeutic efficacy of PPy/PFD@Inulin gel in both cellular and animal models. Current research findings indicated that inulin gel exhibited a certain sustained-release capability. Future optimization of this gel’s drug-release profile can be achieved by fine-tuning its structure and components, with the goal of enhancing drug stability and sustained release for improved therapeutic outcomes. Furthermore, functional modifications of the components in PPy/PFD@Inulin gel may augment its targeting specificity to particular intestinal loci, thereby further boosting therapeutic effectiveness. This multifunctional composite hydrogel, utilizing prebiotic inulin as a carrier, is safe, reliable, simple to prepare, scalable for mass production, and capable of ameliorating the intestinal microenvironment. Such a multifunctional hydrogel platform could serve as a convenient and valuable modality for the treatment of a spectrum of other pathologies, presenting novel strategies for the advancement of biomedical materials. Methods Materials Pyrrole, pirfenidone, Cy5.5 NHS ester, 2,2-Diphenyl-1-picrylhydrazyl, and 2,2’-Azinobis (3-ethylbenzothiazoline-6-sulfonic acid ammonium salt) were obtained from Aladdin. Inulin from chicory, the EdU Cell Proliferation Kit, and the Tissue or Cell Total Protein Extraction Kit were purchased from Sangon Biotechnology Co., Ltd. Total superoxide dismutase and Reactive Oxygen Species assay kits were obtained from Beyotime Biotechnology Co., Ltd. Dextran sodium sulfate was obtained from Meilunbio Co., Ltd. Synthesis of PPy nanozymes 1.5 g of polyvinyl alcohol was dissolved in 20 mL of deionized water and stirred at 60 °C until complete dissolution. After cooling to room temperature, 1.2434 g of ferric chloride hexahydrate was added and stirred at room temperature for 1 h. Subsequently, 140 μL of pyrrole was introduced and stirred at 5 °C for 4 h. Upon completion of the reaction, washed three times with water (15,100 x g/min, 20 min), and subjected to lyophilization. The resulting PPy nanozymes powder was obtained by lyophilization. Synthesis of PPy/PFD@Inulin gel The PFD was dissolved in a small amount of methanol. Subsequently, 1 mL of the PPy nanozymes solution and 0.6 g of inulin were added, and the mixture was stirred to achieve uniformity. The resulting solution was then placed in a water bath at 80 °C, stirred at 800 rpm for 10 min, and finally allowed to stand at room temperature for 12 h to obtain PPy/PFD@Inulin gel. Control samples, including blank inulin gel, PFD@Inulin gel and PPy@Inulin gel, were also prepared using the same method. Characterization of PPy nanozymes and PPy/PFD@Inulin gel TEM (JEM-1400flash), SEM (Gemini500), and modular compact rheometer (Anton Paar, H-PTD200) were employed to characterize the PPy nanozymes and PPy/PFD@Inulin gel. For TEM and SEM sample preparation of PPy nanozymes, the sample in aqueous solution was deposited on gilder grids or silicon wafers and allowed to dry naturally. The PPy/PFD@Inulin gel and control group gels were characterized by SEM after freeze-drying. The rheological properties of the hydrogels were evaluated using a 25-mm plate pressure-controlled rheometer. In vitro release of PFD from PPy/PFD@Inulin gel PFD solution and PPy/PFD@Inulin gel were added to dialysis bags with a molecular weight cutoff (MWCO) of 1000 Da and placed on an oscillator at 37 °C with a rotation speed of 100 rpm. Samples were collected at various time points after adding the corresponding volumes of PBS buffer. The concentration of PFD was determined by UV−Vis spectrometer at 310 nm. In vitro degradation experiment of PPy/PFD@Inulin gel Before cooling to form the gel, 1 mL of the mixed PPy/PFD@Inulin gel solution was subpackaged into centrifuge tubes; the mass of the centrifuge tubes was termed m[0], and the combined mass of the PPy/PFD@Inulin gel and centrifuge tubes after cooling to form the gel was termed m[1]. The PPy/PFD@Inulin gel was incubated at 37 °C in different environments (pH=1.5, 6.0, 7.4, and 8.0, as well as Bifidobacterium longum solution). The solution above the gel was discarded at different times, the centrifuge tube was weighed, and the recorded weight was denoted as m. Subsequently, the percentage quality loss was calculated. Three samples were collected during each experimental period. [MATH: W%=mm0< mrow>m1m0×< /mo>100% :MATH] 1 Determination of lactic acid in incubation of PPy/PFD@Inulin gel with BL bacteria After co-incubating PPy/PFD@Inulin gel with BL for 2 days, the supernatant was obtained by 1700 xg/5 min centrifugation and filtered with 0.22 μm filter membrane. Analytical HPLC with C18 column. In the HPLC procedure, the mobile phase is composed of two parts: A) dilute sulfuric acid (95% in volume percentage) and B) acetonitrile (5% in volume percentage). The flow rate was fixed at 0.5 mL/min, the elution time was 15 min, and eluent detection was monitored at 210 nm. Retention of PPy/PFD@Inulin gel in the gastrointestinal system Preparation of Cy5.5-PPy nanozymes and Cy5.5-PPy/PFD@Inulin gel. For each milliliter of PPy nanozymes, 8 μg of Cy5.5 was added and placed in a 37 °C oscillator for 12 h. Subsequently, it was placed into a dialysis bag (MWCO: 14000 Da) and dialyzed for 24 h to remove excess Cy5.5. Cy5.5-PPy/PFD@Inulin gel was prepared according to the procedure described above. The Cy5.5-PPy nanozymes and Cy5.5-PPy/PFD@Inulin gel prepared were orally administered to mice. Mice were dissected at 0, 2, 4, 8, 12, and 24 h post-administration, and the gastrointestinal tract from the small intestine to the colon was extracted for analysis. The fluorescence distribution was photographed using Spectral Instruments Imaging (SI Imaging AmiX), and the fluorescence intensity was quantitatively analyzed. The excitation wavelength used was 675 nm, the emission wavelength was 730 nm, and the exposure time was 10 s. In vitro RONS scavenging The capacity of PPy nanozymes to scavenge active nitrogen was analyzed by detecting DPPH and ABTS free radicals. 0.5 mL PPy nanozymes solution and 1 mL DPPH or ABTS working solution were incubated in the dark for 30 min, and then the UV absorption at 519 nm or 732 nm was measured. Where A[0] is the UV absorption value of the DPPH or ABTS working fluid and water, A[x] is the UV absorption value of the DPPH or ABTS working fluid and material reaction, and A[1] is the UV absorption value of the material under the total system. [MATH: Scaveng< mi>ingeffect%= A0AX+A1A0 ×100% :MATH] 2 The ability of PPy nanozymes to scavenge active oxygen was analyzed by detecting O[2]·^− and H[2]O[2]. The O[2]·^− scavenging capacity of PPy nanozymes was assessed using the SOD assay kit. The ability of PPy nanozymes to scavenge H[2]O[2] was measured using the three-electrode CV method. Carbon rods and saturated calomel electrodes were used as counter and reference electrodes, respectively. PPy nanozymes (10 μL, 1 mg/mL) was dripped onto and dried on the GC working electrode. To evaluate the catalytic activity of PPy nanozymes for the elimination of H[2]O[2], in the presence of 5.0 × 10^−3 M H[2]O[2] in N[2]-saturated 0.01 M PBS (pH 7.4), the PPy nanozymes-modified GC electrode and the bare GC electrode in PBS (H[2]O[2]) were used to record the CV curve on an electrochemical analyzer (CHI760E, China). Stability of PPy nanozymes and PPy/PFD@Inulin gel at different pHs Hydrochloric acid (HCl) and sodium hydroxide (NaOH) were used to regulate the acidity and basicity of the PBS. In this experiment, PBS with varying pH values (pH=1.5, 6.0, 7.4, and 8.0) was used. The PPy nanozymes and PPy/PFD@Inulin gel were immersed in PBS at different pH values for 6 h, and their structural integrity was determined using TEM or SEM. Determination of RONS clearance under simulated gastrointestinal conditions Owing to the varying pH levels in the gastrointestinal tract, HCl was initially added to the PPy nanozymes solution to achieve a pH of 1.5 and incubated at 37 °C for 4 h. Subsequently, NaOH was added dropwise to the PPy nanozymes solution to adjust the pH to 8.0 and incubated at 37 °C for 4 h. Following these adjustments, the scavenging ability against DPPH, ABTS, and O[2]·^− was evaluated using the experimental steps outlined above. Cell culture NCM460 cell lines were obtained from In Cell (San Antonio, TX). CCD-18Co (CRL-1459) cell lines were obtained from the American Type Culture Collection (ATCC). NCM460 cells were cultured in 1640 medium containing 10% FBS, streptomycin (100 g/mL) and penicillin (100 U/mL) in an incubator at 37 °C. CCD-18Co cells were cultured in DMEM (high sugar and pyruvate) medium containing 10% FBS, streptomycin (100 g/mL) and penicillin (100 U/mL) in an incubator at 37 °C. Cell viability NCM460 cells were seeded in a 96-well plate at a density of 1 × 10^4 cells/well and cultured in a serum-containing 1640 medium for 24 h. The experimental materials were prepared in a serum-free medium. Fresh medium was used for the control group and used to incubate cells for 24 or 48 h. The cells were incubated with 20 μL 3-(4,5-dimethylthiazol-2-yl)−2,5-diphenyltetrazolium bromide (MTT) (5 mg/mL) solution for 4 h, and the supernatant was replaced by dimethyl sulfoxide (150 μL). Finally, the absorbance was recorded utilizing a microplate reader (BioTek, ELX800) to calculate cell viability. Cellular antioxidation experiment The protective efficacy of PPy nanozymes against oxidative damage induced using H[2]O[2] was evaluated by live/dead fluorescence staining or the MTT assay. NCM460 cells treated with 3 mM H[2]O[2] were incubated with different concentrations of PPy nanozymes and stained with calcein-AM and PI dyes. After co-incubating the materials with 1 mM H[2]O[2] for 6 h, the protective efficacy against H[2]O[2]-induced cellular oxidative damage was quantitatively assessed using the MTT assay. NCM460 cells were grown in a 96-well plate at 1 × 10^4 cells/well and cultured for 24 h. Different PPy nanozymes concentrations were dispersed in the medium, and 1 mM H[2]O[2] was added. NCM460 cells were incubated with the above solution at 37 °C for 45 min. Subsequently, cells were incubated with DCFH-DA at 37 °C for 30 min and photographed using a fluorescence microscope. NCM460 cells were grown in a 96-well plate at a density of 1 × 10^4 cells/well and cultured for 24 h. The NCM460 cells were treated with 800 ng/mL LPS for 8 h and then removed. Different concentrations of PPy nanozymes were dispersed in the medium with cells for 4 h, after which cells were incubated with DCFH-DA at 37 °C for 30 min and photographed using a fluorescence microscope. Animals Animals were grouped according to different experiments and put in separate cages. All animals were housed and maintained in pathogen-free conditions and allowed free access to food and autoclaved water ad libitum in a 12 h light (8:00 AM-8:00 PM)/dark (8:00 PM-8:00 AM) cycle, with controlled temperature (25 ± 1 °C) and humidity (40–70%). We euthanized mice by carbon dioxide suffocation. BALB/c and C57bl/6j mice (female, 6 weeks old, 18 − 20 g) were purchased from Henan Sikebas Biotechnology Co., Ltd. All animal experiments were approved by the Institutional Animal Care and Use Committee of Hefei University of Technology (No. HFUT20220305003). In vivo biocompatibility and biodistribution characterization The BALB/c mice were randomly divided into five groups (n = 5). One group of healthy mice served as a control, and the other four groups received oral administration of PPy/PFD@Inulin gel for the first four days, and euthanasia was performed at various time points (4th, 7th, 15th, and 30th days). Blood and the main organs were collected for hematology and histological analyzes. The BALB/c mice were randomly divided into six groups (n = 3), with each mouse receiving 0.2 mL Cy5.5-PPy/PFD@Inulin gel orally. The mice were sacrificed at 0, 2, 4, 8, 12, and 24 h. The small-animal imaging software Spectral Instruments Imaging (SI Imaging AmiX) was used for in vivo imaging. Following this, the isolated colon segment, heart, liver, spleen, lung, and kidney, were examined using an imager, and the biological distribution of the PPy/PFD@Inulin gel in vitro was evaluated. Effect of hydrogel on intestinal physiology The BALB/c mice were randomly divided into 2 groups (n = 8). One group of healthy mice served as controls, while another group orally received PPy/PFD@Inulin gel on days 0, 1, 3, 5, and 7. Throughout the 9-day experiment, daily measurements were taken of food weight consumed by the mice, as well as their body weights. On the 9th day, the feces of mice were collected for 16S rRNA sequencing. The NEB Next® Ultra DNA Library Prep Kit library construction kit was used to construct the library, and an Agilent 5400 was used for detection and qPCR quantification of the constructed library. After the library was qualified, NovaSeq6000 was used for sequencing. Preventative and delayed treatment of UC by PPy/PFD@Inulin gel The BALB/c mice were randomly divided into eight groups (n = 8). Before the experiment began, the animals were domesticated for one week. From days 0 to 7, the mice received 3% DSS instead of drinking water to induce colitis. PPy/PFD@Inulin gel was orally administered on the 1st, 3rd, 5th, and 7th days, and the mice were euthanized on the 9th day. Throughout the 9-day experiment, daily recordings were made for body weight, fecal morphology, and fecal bleeding. Part of the colon was stained with H&E. The level of inflammatory factors was assessed by homogenizing the colon on ice and quantifying the resultant supernatant using ELISA kits. In the delayed treatment of UC animal model, the clinically used 5-ASA was employed as a positive drug for the treatment of IBD. The BALB/c mice were randomly divided into nine groups (n = 8). The animals were domesticated for one week before the commencement of the experiment. From days 0 to 6, the mice received 3% DSS instead of drinking water to induce colitis. The mice received oral administration of PPy/PFD@Inulin gel on days 7, 9, 11, and 13 and were euthanized on the 15th day. Throughout the 15-day experiment, the body weight, fecal morphology and fecal bleeding were assessed every two days. Part of the colon was subjected to H&E, immunohistochemical, and immunofluorescence staining. The levels of inflammatory factors were assessed by homogenizing the colon on ice, and the supernatant was quantified using commercial ELISA kits. Fecal samples from nine groups of mice were collected on the 14th day for 16S rRNA sequencing. Intestinal permeability test The BALB/c mice were randomly divided into 3 groups (n = 5). On the 14th day of the delayed treatment model, approximately 2 h after administering 4 kDa FITC-dextran (Sigma, 10 mg/kg), blood samples were collected from three mice via retro-orbital bleeding. The blood was centrifuged at 500 xg/15 min to obtain plasma, which was then measured for OD values. Subsequently, the colons of the mice were excised and imaged using a small animal fluorescence imaging system with an excitation wavelength of 488 nm and an emission wavelength of 520 nm. Western blotting of ZO-1 and occludin proteins Proteins were extracted from the colon tissue of delayed treatment model mice using the Tissue or Cell Total Protein Extraction Kit, and protein concentration was determined using a BCA assay kit. 7.5% sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE) was employed to separate an equal amount of colon tissue extract, which was subsequently transferred to a polyvinylidene fluoride membrane (PVDF, Millipore). The blocked PVDF membrane was then incubated with the respective primary antibodies, ZO-1 (Proteintech Group, Inc), and occludin (ABclonal), at 4 °C overnight. Following that, the membrane was incubated with the secondary antibody (ABclonal) at room temperature for 90 min. To visualize protein bands, the membrane was incubated with horseradish peroxidase (HRP) substrate (Tanon, Shanghai, China). All protein bands were normalized to β-actin. Oral administration of PPy/PFD@Inulin gel for the treatment of intestinal fibrosis The C57bl/6j mice were randomly divided into eight groups (n = 8). Prior to the experiment, the animals were domesticated for one week. The animals were repeatedly exposed to multiple DSS cycles. Briefly, each cycle comprised a five-day administration of different concentrations of DSS, with 1.5% DSS administered on days 0 − 5, 2% administered on days 10 − 15, and 2.5% administered on days 20 − 25. The mice received drinking water for other days. From day 15, the drug was administered orally once daily until day 35, after which the mice were sacrificed. During the 35-day experimental period, the body weights of the mice were assessed every 5 days. A portion of the colon underwent H&E and immunohistochemical staining. Proteins were extracted from the colon tissue of fibrotic mice using the Tissue or Cell Total Protein Extraction Kit, and protein concentration was determined using a BCA assay kit. 12% SDS-PAGE was employed to separate an equal amount of colon tissue extract, which was subsequently transferred to a PVDF. The blocked PVDF membrane was then incubated with the respective primary antibodies, α-SMA, and TGF-β1 (ABclonal), at 4 °C overnight. Following that, the membrane was incubated with the secondary antibody (ABclonal) at room temperature for 90 min. To visualize protein bands, the membrane was incubated with HRP substrate. All protein bands were normalized to GAPDH. CCD-18Co cells were inoculated in a 96-well plate with 1 × 10^4 cells/well and cultured in H-DMEM medium containing serum for 24 h. Incubated different groups of materials and EdU solution in the well plate at 37 °C for 8 h. EdU incorporation was measured using an EdU cell proliferation assay kit. LDH activity in CCD-18Co cells was detected using the LDH Cytotoxicity Assay Kit. The supernatant of the culture medium was collected after 24 and 48 h of treatment with 0, 0.25, 0.5, or 1.0 mg/mL PFD and analyzed for LDH. Statistical Analysis All results are expressed as the mean ± SD, as indicated. Statistical analyzes were performed using GraphPad Prism 8. A one-way ANOVA with Tukey’s post-hoc test was used to evaluate statistically significant differences in multiple group data (P > 0.05 (n.s.), *P < 0.05, **P < 0.01, ***P < 0.001). Statistical significance between two groups was evaluated using the Student’s t-test. (P > 0.05 (n.s.), *P < 0.05, **P < 0.01, ***P < 0.001) (n.s., not significant). Reporting summary Further information on research design is available in the [197]Nature Portfolio Reporting Summary linked to this article. Supplementary information [198]Supplementary information^ (2.5MB, pdf) [199]Peer Review File^ (6.2MB, pdf) [200]Reporting Summary^ (174.1KB, pdf) Source data [201]Source Data^ (5.4MB, xlsx) Acknowledgements