Abstract Anti-epidermal growth factor receptor (EGFR) therapy (cetuximab) shows a limited clinical benefit for patients with locally advanced or recurrent/metastatic head and neck squamous cell carcinoma (HNSCC), due to the frequent occurrence of secondary resistance mechanisms. Here we report that cetuximab-resistant HNSCC cells display a peroxisome proliferator-activated receptor alpha (PPARα)-mediated lipid metabolism reprogramming, with increased fatty acid uptake and oxidation capacities, while glycolysis is not modified. This metabolic shift makes cetuximab-resistant HNSCC cells particularly sensitive to a pharmacological inhibition of either carnitine palmitoyltransferase 1A (CPT1A) or PPARα in 3D spheroids and tumor xenografts in mice. Importantly, the PPARα-related gene signature, in human clinical datasets, correlates with lower response to anti-EGFR therapy and poor survival in HNSCC patients, thereby validating its clinical relevance. This study points out lipid metabolism rewiring as a non-genetic resistance-causing mechanism in HNSCC that may be therapeutically targeted to overcome acquired resistance to anti-EGFR therapy. Subject terms: Cancer metabolism, Head and neck cancer __________________________________________________________________ Resistance to anti-EGFR therapy is a clinical issue for patients with advanced head and neck cancers. Here, the authors show that therapy-resistant cancer cells enhance fatty acid metabolism, which can be therapeutically targeted by inhibiting peroxisome proliferator-activated receptor alpha (PPARα). Introduction Head and neck squamous cell carcinoma (HNSCC) afflicts about 700,000 patients annually and is the sixth most common cancer worldwide^[82]1. HNSCC is often diagnosed at late stages, with loco-regionally advanced diseases for which treatment remains a clinical challenge^[83]2,[84]3. Indeed, despite aggressive multimodal therapeutic interventions including surgery, radiation therapy with or without concomitant chemotherapy, more than half of HNSCC patients experience loco-regional or distant relapse^[85]4. While immunotherapy has recently been implemented for patients with recurrent/metastatic HNSCC exhibiting programmed cell death ligand 1 (PD-L1) expression^[86]5, anti-epidermal growth factor receptor (EGFR) therapy remains the standard of care for PD-L1-negative advanced HNSCC as well as one therapeutic option for PD-L1-positive tumors that progress after immunotherapy treatment^[87]6. EGFR overexpression is observed in 90% of HNSCC^[88]7 and it is associated with poor prognosis and resistance to radiation therapy and chemotherapy^[89]8,[90]9. However, the clinical efficacy of anti-EGFR monoclonal antibodies (e.g. cetuximab) is strongly limited by either intrinsic resistance or the development of acquired drug resistance after an initial tumor response, and most patients relapse within few months. Moreover, no validated treatment options exist for the patients who progress after anti-EGFR therapy, indicating an unmet clinical need. Unlike other cancer types (e.g. colorectal cancers with RAS/BRAF mutations or lung cancers with EGFR mutations), alterations in genes from the EGFR-regulated signaling pathways are extremely rare in HNSCC and they have not been clearly associated with the clinical response to anti-EGFR therapy^[91]10–[92]12. In this context, understanding resistance-supporting non-genetic causes is a critical challenge to improve the outcome of HNSCC patients receiving anti-EGFR targeted therapy. To date, several mechanisms of acquired resistance to cetuximab have already been identified in HNSCC patients^[93]13,[94]14. They are very diverse, likely due to the inter-patient heterogeneity as well as the influence of the tumor microenvironment and anatomic location^[95]15. Dysregulated cellular metabolism is a common hallmark of cancer, and it has emerged as an important factor that contributes to disease progression and clinical relapse in cancer patients, including HNSCC^[96]16,[97]17. Although it is well established that metabolic preferences in cancer cells can continuously evolve to fulfil their