Abstract Background Anxiety disorders (AD), ADHD, and head and neck cancer (HNC) are complex conditions with potential genetic interconnections that remain to be fully elucidated. The purpose of this study is to investigate gene-level connections among ADHD, AD, and HNC. Method A comprehensive literature mining approach identified potential gene-disease relationships from PubMed and bioinformatics databases, analyzing 19,924 genes. An AI-driven computational process constructed a gene-disease relationship table using the Adjusted Binomial Method Algorithm (ABMA) to evaluate association reliability. Overlapping genes were analyzed through protein-protein interaction (PPI) networks, functional annotations, and literature-based pathway analyses to elucidate shared and unique genetic mechanisms linking these diseases. Results The analysis identified 141 significant genes associated with AD, 153 with ADHD, and 1,065 with HNC (q-value < 0.05). These genes demonstrated significant overlap (odds ratio ≥ 1.8; p ≤ 2.58E-2) and high interconnectivity (PPI network density ≥ 0.39, clustering coefficient ≥ 0.76, and diameter ≤ 3). Centrality analysis revealed core genes such as IL-6, MYC, NLRP3, and CXCR4 as critical mediators. Functional enrichment analysis identified key pathways, including serotonergic synapse, inflammatory response, and Toll-like receptor signaling, highlighting the involvement of neuronal and immune mechanisms. Functional pathway analysis demonstrated reciprocal genetic influences among AD, ADHD, and HNC, emphasizing shared and distinct gene-level connections that may underlie their co-occurrence and mutual risk factors. Conclusion This study reveals a complex and interconnected genetic network among AD, ADHD, and HNC, highlighting shared pathways, unique mechanisms, and critical genes, providing valuable insights into the genetic underpinnings of these conditions and potential avenues for therapeutic exploration. Keywords: gene-level connections, anxiety disorders, ADHD, head and neck cancer, therapeutic exploration Introduction Anxiety disorders (AD) are a group of mental health conditions characterized by excessive fear, worry, and related behavioral disturbances. Epidemiologically, ADs are highly prevalent, affecting approximately 19.1% of adults in the United States in a given year, with a lifetime prevalence of around 29% ([31]1). These disorders can arise from a combination of genetic, environmental, and psychological factors, making understanding their epidemiology crucial for effective prevention and treatment strategies ([32]2). Attention-Deficit/Hyperactivity Disorder (ADHD) is a neurodevelopmental disorder characterized by persistent patterns of inattention, hyperactivity, and impulsivity that can interfere with functioning or development. ADHD affects approximately 6-7% of children worldwide ([33]3), with varying prevalence rates across different regions and populations. Head and Neck Cancer (HNC) encompasses a diverse group of malignancies that arise in the oral cavity, pharynx, larynx, and other related structures. Epidemiologically, HNC accounts for approximately 4% of all cancers in the United States, with an estimated 54,540 new cases and 10,780 deaths projected for 2023 ([34]4). To clarify terminology, AD in this study refer to the broad spectrum of anxiety-related conditions as defined by the Diagnostic and Statistical Manual of Mental Disorders (DSM-5), including but not limited to generalized anxiety disorder (GAD), panic disorder, separation anxiety disorder, and social anxiety disorder. While these subtypes differ in their specific symptomatology, they share core features of excessive fear, worry, and behavioral disturbances. We use the term AD to encompass this spectrum, acknowledging that this inclusive approach may obscure subtype-specific nuances but allows for a broader exploration of shared genetic mechanisms. Importantly, AD in this context refers specifically to Anxiety Disorders and not Alzheimer’s disease, which is another psychiatric condition with distinct pathophysiology and clinical presentation. Similarly, HNC encompasses a diverse group of malignancies arising in the oral cavity, pharynx, larynx, sinuses, and salivary glands. This includes squamous cell carcinomas, adenocarcinomas, and other histological subtypes. By using the term HNC, we aim to capture the shared genetic and clinical features across these malignancies, recognizing that this broad categorization may overlook subtype-specific differences. In this study, gene-disease associations were analyzed at the level of full clinical diagnoses rather than individual symptoms to ensure consistency across ADHD, AD, and HNC. While ADHD is generally treated as a single diagnostic entity, AD and HNC encompass multiple subtypes with distinct but overlapping genetic underpinnings. While this approach facilitates a comprehensive analysis of shared genetic pathways, it also necessitates caution in interpreting findings, as the heterogeneity within HNC subtypes may influence results. Associations have been suggested between ADHD and AD, with ADHD often co-occurring with some form of anxiety ([35]5). Genome-wide association studies have demonstrated significant genetic correlations between ADHD and AD (rg = 0.34), with both conditions sharing genetic risks linked to neuroticism (rg = 0.81) and major depressive disorder, suggesting a common polygenic architecture that may explain their frequent comorbidity ([36]6, [37]7). Mendelian randomization analyses further reveal that socioeconomic factors, such as higher educational attainment and income, serve as protective influences for both ADHD and anxiety disorders, underscoring the role of gene–environment interactions in their co-occurrence ([38]8). Together, these findings highlight the importance of exploring the shared and unique genetic factors underlying these conditions. Extending this framework to HNC involves investigating shared biological pathways such as neuroinflammation and immune dysregulation. In HNC patients, higher pretreatment anxiety levels are significantly associated with poorer 2-year overall survival, with tumor response mediating this relationship, suggesting that AD may negatively impact cancer outcomes ([39]9). Conversely, HNC patients, particularly those who have undergone radiotherapy, may develop anxiety and depressive disorders ([40]10). Moreover, shared genes have been identified as playing roles in all three disorders, including CYP2D6 ([41]11–[42]13). Emerging hypotheses propose that systemic inflammation—implicated in ADHD and anxiety through genetic variants in pathways like IL6 and TNF-α—may also contribute to oncogenic processes in HNC ([43]14, [44]15). For instance, chronic inflammation and oxidative stress, common in neuropsychiatric conditions, are established drivers of carcinogenesis. Although direct genetic links between HNC and psychiatric disorders remain underexplored, the overlap in inflammatory pathways provides a plausible mechanistic bridge. Additionally, while ADHD-associated behaviors (e.g., tobacco use) may elevate HNC risk, genetic predispositions to immune dysregulation could further compound susceptibility ([45]16). By elucidating these shared mechanisms, research may uncover transdiagnostic therapeutic targets and inform preventive strategies across neurodevelopmental, psychiatric, and oncological conditions. This study aims to address the gap in knowledge by exploring gene-level connections among these conditions using a computational biology approach. We hypothesize that there are significant overlapping genetic pathways and core genes that contribute to the co-occurrence and mutual risk factors of AD, ADHD, and head and neck cancer. The findings of this study could provide valuable insights into the genetic underpinnings of these conditions, potentially informing future research and therapeutic strategies. Method Study workflow This study followed a structured multi-step workflow to explore the genetic relationships among ADHD, AD, and HNC. First, relevant gene-disease associations were retrieved from multiple bioinformatics databases and literature sources, including PubMed and the AIC Bioinformatics Database (ABD). Next, an AI-driven data processing pipeline was applied to filter and refine gene-disease associations, ensuring high-quality data for subsequent analysis. Overlapping and unique gene sets across the three diseases were identified, and statistical enrichment analyses were conducted to assess their biological significance. Finally, functional and pathway analyses were performed to investigate potential mechanisms linking ADHD, AD, and HNC. Details of each step, including data sources, computational approaches, and statistical methods, are provided in the subsequent sections. The workflow of the current study is depicted in [46]Figure 1 . To note, as described in the Introduction, AD refers to anxiety disorders as defined by DSM-5, and HNC encompasses multiple malignancies arising in the head and neck region. This study considers ADHD as a single diagnostic entity, while AD and HNC include multiple subtypes with shared genetic features. Figure 1. Figure 1 [47]Open in a new tab Workflow diagram of this study. Generated using [48]https://bioinfogp.cnb.csic.es/tools/venny/. Disease gene identification using literature-based mining To systematically identify gene-disease associations for ADHD, AD, and HNC, we conducted a comprehensive literature mining approach utilizing multiple bioinformatics resources. The analysis encompassed whole-genome genes (19,924 genes) and aimed to extract relevant disease-gene relationships from curated scientific literature. First, we employed the Entrez API ([49]http://www.ncbi.nlm.nih.gov/Entrez/) to programmatically query PubMed ([50]https://pubmed.ncbi.nlm.nih.gov) for relevant publications. This automated process retrieved references containing associations