Abstract Tea quality in greenhouse was certain gap with open air. Metabolites and foliar microorganisms were investigated under seaweed fertiliser (CF) and gibberellin (CH) treatments using sensory evaluation, HPLC, untargeted metabolomics, 16S rDNA, and Internal Transcribed Spacer. CF tea was mellow, less astringent, and of better quality compared to CH. Catechin, −(−)Epicatechin, and Epigallocatechin were notably lower in CF. Differentially accumulated metabolites (DAMs) were notably enriched in Flavonoid and Phenylpropanoid biosynthesis, both involved in Catechin synthesis. DAMs in these pathways appeared down-regulated in CF. The CF improved quality by down-regulating metabolites in Phenylpropanoid biosynthesis in conjunction with microbial community metabolism enriched in amino acid and secondary metabolite biosynthesis. Metabolite- microbial correlation analysis indicated that the highest correlation with phenylpropane pathway metabolites was in bacteria Variovorax and Pseudomonas, and in fungi Filobasidium. The study provides theoretical basis for regulating flavour quality of greenhouse tea. Keywords: Quality, Greenhouse tea, Metabolomics, Microorganisms Graphical abstract [31]Unlabelled Image [32]Open in a new tab Highlights * • CCF exhibited umami, mellow and fragrant and sweet flavour, while CH showed slightly astringent, mellow and thick * • Catechin, −(−)Epicatechin, and Epigallocatechin flavour metabolites were notably lower in CF * • Phenylpropanoid biosynthesis was identified as a key pathway driving the flavour differences * • Strong correlations were observed between signature microorganisms and flavour substances * • A greenhouse tea quality improvement measure was proposed Chemical compounds studied in the article Catechin (PubChem CID 9064) (−)-Epicatechin (PubChem CID 72276) Epigallocatechin (PubChem CID 72277) Gallocatechin (PubChem CID 65084) (−)-Catechin gallate (PubChem CID 6419835) (−)-Epicatechin gallate (PubChem CID 107905) (−)-Epigallocatechin gallate (PubChem CID 65064) Gallocatechin gallate (PubChem CID 199472) Caffeine (PubChem CID 2519) L-Theanine (PubChem CID 439378). 1. Introduction Tea plants are normally cultivated in tropical and subtropical regions ([33]Wang et al., 2020) and are susceptible to low temperatures in mid- to high-latitudes regions and at high altitudes ([34]Tong et al., 2024). Winter freezes or spring frosts can cause massive deaths of tea plants ([35]Di et al., 2024). Some regions in northern China are still subject to spring cold affecting tea plants even into March ([36]Hao et al., 2018). In order to safely survive the winter and prevent spring cold, plastic greenhouse facilities are used to artificially control environmental factors such as temperature and humidity, promoting tea plants growth or breaking dormancy to allow for earlier harvest. Inside the greenhouse, temperatures are warmer, and the humidity is higher ([37]Li et al., 2016), leading to faster leaf development, with elongated buds and thinner leaves. However, the accumulation of key tea compounds, particularly quality-related metabolites, may be limited. After brewing, the fresh flavour remains fine, but the taste is bland, and the aroma is common ([38]Ma et al., 2024). Appearance of both the dry tea and the leaf bottom is clearly distinct from the of tea grown in the open air. In traditional tea garden management, gibberellin (GA) significantly promotes the spring sprouting of overwintering tea plants by activating the phenylpropanoid biosynthesis pathway ([39]Di et al., 2019), accelerating internode elongation and leaf expansion ([40]Yue et al., 2018). However, the increase in yield may lead to an imbalance in quality, prompting researchers to explore more comprehensive tea garden management strategies. Meanwhile, the accumulation of various seaweeds along China's coastline is often treated as waste ([41]Civelek Yoruklu et al., 2022). These seaweeds are rich in organic compounds, serving as a natural biological resource for organic fertilizers ([42]Gibilisco et al., 2022). Foliar application of seaweed extracts has been shown to enhance crop quality and growth ([43]Shang et al., 2024), yet their potential in tea cultivation remains underexplored. High quality tea is highly regarded for its smooth taste, low bitterness and astringency, and rich umami flavour. However, the bitter and astringent notes of tea remain unappealing to many consumers. For instance, flavonoid glycosides and catechin compounds are the primary contributors to bitterness and astringency ([44]Ye et al., 2022). Flavour, as a key indicator of tea quality ([45]Zhang et al., 2020), is largely determined by the composition and content of non-volatile compounds ([46]Wang et al., 2022). These compounds not only shape the unique flavour profile of tea but also influence its leaf morphology, colour, aroma, and functional properties ([47]Wang et al., 2021). In addition, microorganisms play a crucial role in the formation of tea flavour ([48]Han et al., 2024). The involvement of microbes can impart characteristic flavours to tea ([49]Tian et al., 2024). For example, the collaboration between bacteria and fungi promotes dynamic changes in flavonoid compounds and amino acids ([50]Zhang et al., 2024), and the enzymes they secrete can catalyze the metabolic transformation of important secondary metabolites. In different types of tea, microbial activities exhibit diverse characteristics. In the production of Fu brick tea, core functional microorganisms significantly reduce the content of catechins and flavonoid compounds, thereby lowering bitterness and astringency while enhancing mellowness ([51]Li et al., 2021a). In Wuyi rock tea, the bacterium Chryseobacterium influences the production of catechin compounds, shaping the distinctive rock flavour ([52]Wu et al., 2024). In Liubao tea, Sphingomonas improves flavour by modulating the biosynthesis of flavonoids and flavonols ([53]Liu et al., 2024). Furthermore, in Shui Xian and Pu’er teas, microorganisms regulate metabolic products to create unique flavour profiles ([54]He et al., 2023; [55]Yuan et al., 2024). Therefore, it is essential to study the impact of microorganisms on the quality of greenhouse tea. To mitigate quality deficiencies in greenhouse tea due to faster growth. In this study, sensory evaluation, HPLC, metabolites with 16S and Internal Transcribed Spacer (ITS) techniques were used to study the gap between microbiome and metabolites due to seaweed fertiliser and gibberellin treatments and explored the best model suitable for quality improvement of greenhouse tea plants. Changes, effects, and interactions patterns of tea leaves microbes and metabolites were analysed. The key metabolites and core microorganisms responsible for improving tea quality were identified, and their functions were fully explored, with the goal of providing theoretical references for