Abstract Introduction Chronic glomerulonephritis (CGN) is a common glomerular disease with multifactorial pathogenesis. Huangkui capsule (HKC), a traditional Chinese herbal formulation, demonstrates therapeutic potential in CGN; however, its molecular mechanisms remain insufficiently characterized. This study aimed to clarify the therapeutic mechanisms of HKC in CGN by integrating proteomic analysis with network pharmacology. Methods We employed liquid chromatography–mass spectrometry (LC-MS) to identify the active components of HKC. A CGN rat model was established and treated with HKC. Renal function parameters and serum inflammatory cytokines were assessed. Histopathological alterations and IgG deposition in kidney tissues were examined using hematoxylin–eosin (HE) staining and immunofluorescence, respectively. Proteomic profiling of renal tissue was conducted, and network pharmacology analysis was applied to identify potential therapeutic targets of HKC. Results A total of 39 active compounds were identified in HKC. HKC administration significantly improved renal function and mitigated glomerular injury in CGN rats. Proteomic analysis revealed 2,079 differentially expressed proteins, predominantly associated with oxidoreductase activity. Network pharmacology identified 462 targets related to HKC and 1,835 targets associated with CGN, with 13 overlapping targets, including STAT3, PIK3R1, AKT1, HIF-1α, and VEGF, which were downregulated following HKC treatment. Conclusion HKC exerts renoprotective effects in CGN by regulating multiple signaling pathways, notably HIF-1, VEGF, PI3K-Akt, MAPK, and PPAR. Through attenuation of inflammatory and oxidative responses, HKC alleviates renal pathological damage and supports kidney function, offering mechanistic insight into its multi-target therapeutic potential. Keywords: Huangkui capsule, proteomics, network pharmacology, chronic glomerulonephritis, mechanism 1 Introduction CGN is a common immune-mediated glomerular disorder characterized by proteinuria, hematuria, hypertension, and edema, often leading to renal insufficiency and, ultimately, end-stage renal disease (ESRD) ([34]Chebotareva et al., 2015; [35]Satirapoj et al., 2015). The global burden of CGN is rising, with mortality increasing annually from 2015 to 2020, reaching 52,260 deaths in 2020 ([36]Foti et al., 2021). In China alone, chronic kidney disease (CKD) affects approximately 132.3 million individuals, contributing nearly one-fifth of the global burden ([37]Kriz et al., 1998). Research suggests that cytokine- and immunokine-mediated microcirculatory disturbances, cellular proliferation, and immune complex deposition are key pathological mechanisms ([38]Ahmad and Bomback, 2020). Abelmoschus manihot (L.) Medic (AM), a traditional Chinese medicine, has been used in China for centuries. HKC, a single-herb traditional Chinese medicine preparation derived from AM corolla extract. It was approved by the China Food and Drug Administration (CFDA) in 1999 (Z19990040).The primary active components of AM are flavonoids, including rutin, hyperoside, hibifolin, isoquercitrin, myricetin, quercetin, and quercetin-3-O-robinobioside ([39]Guo et al., 2015; [40]Li et al., 2021). The chemical spectrum and structural formulas of these compounds are shown in [41]Figure 1. In vivo, these flavonoids can be metabolized into sulfate-glucuronide conjugates, which are considered key contributors to the nephroprotective effects of HKC ([42]Guo et al., 2016). Multiple multicenter randomized controlled trials (RCTs) have confirmed that HKC improves renal function in patients with primary glomerular diseases, IgA nephropathy, and diabetic nephropathy (DN) ([43]Li et al., 2017; [44]Li et al., 2020; [45]Zhao et al., 2022). Compared with conventional medications such as angiotensin-converting enzyme ([46]Regev et al., 2022) inhibitors and angiotensin receptor blockers (ARBs), HKC demonstrates distinct advantages in treating chronic kidney disease (CKD), as it improves renal function and reduces proteinuria without adverse effects on blood pressure. Both preclinical and clinical studies consistently indicate that HKC alleviates renal injury, reduces urinary protein excretion, and improves renal function ([47]Cai et al., 2017). The key active ingredients, including quercetin, myricetin, rutin, and hyperoside, exert therapeutic effects via multitarget mechanisms, such as anti-inflammatory, antioxidant, and immunomodulatory pathways ([48]Wan et al., 2022). Therefore, with its remarkable renoprotective effects, HKC has gradually become the clinical treatment of choice for CGN ([49]Pei and Li, 2021). However, studies on its direct targets and signaling pathways are still limited, and the specific mechanisms remain to be elucidated ([50]Liu et al., 2012). FIGURE 1. [51]FIGURE 1 [52]Open in a new tab Determination of 39 compounds in Huangkui capsule by LC-MS/MS.18. Rutin; 20. Hyperoside; 21. Isoquercetin.; 25. Hibifolin; 33. Myricetin; 36. Quercetin. (A) Structural formulae of Rutin, Hyperoside, Isoquercetin, Hibifolin, Myricetin and Quercetin (B). This study will combine network pharmacology and proteomics to investigate the effectiveness and potential molecular mechanism of CGN treatment with HKC, which will provide new perspectives and scientific references for further revealing its potential pharmacological effects,