Abstract Thermophiles and psychrophiles, adapted to extreme temperatures, thrive in hot and cold environments, respectively. Despite their importance to biotechnology and environmental research, their adaptation mechanisms remain unclear. We have performed a comparative analysis of the genomes and metabolic networks of these species. Psychrophiles were found to have larger genomes, more genes, bigger metabolic networks, fewer metabolite exchanges, and higher growth rates compared to thermophiles. These species show amino acid and codon preferences: thermophiles favor