Abstract As persistent organic pollutants, polychlorinated biphenyls (PCBs) accumulate in the bodies of animals and humans, resulting in toxic effects on the reproductive, immune, nervous, and endocrine systems. The biological and toxicological characteristics of enantiomers of chiral PCBs may differ, but these enantioselective effects of PCBs have not been fully characterized. In this study, we performed metabolomics analysis, using ultra-high performance liquid chromatography tandem mass spectrometry (UPLC-MS/MS) to investigate the enantioselective toxic effects of PCB95 in zebrafish (Danio rerio) embryos after exposure to three dose levels of 0.1, 1, and 10 μg/L for 72 h. Multivariate analysis directly reflected the metabolic perturbations caused by PCB95. The effects of (-)-PCB95 and (+)-PCB95 were more prominent than those of the racemate in zebrafish embryos. A total of 26 endogenous metabolites were selected as potential marker metabolites with variable importance at projection values larger than 1 and significant differences (p<0.05). These metabolites included amino acids, organic acids, nucleosides, betaine, and choline. The changes in these biomarkers were dependent on the enantiomer-specific structures of PCB95. Fifteen metabolic pathways were significantly affected, and several nervous and immune system-related metabolites were significantly validated after exposure. These metabolic changes indicated that the toxic effects of PCB95 may be associated with the interaction of PCB95 with the nervous and immune systems, thus resulting in disruption of energy metabolism and liver function. Introduction Polychlorinated biphenyls (PCBs) are ubiquitous contaminants in the environment and can accumulate in the bodies of animals and humans, resulting in toxicity to the reproductive, immune, nervous and endocrine systems [[36]1]. For example, in Japan 1,684 people were poisoned after eating rice bran oil contaminated with PCBs, and more than 30 people died in 1968 [[37]2]. Although PCBs became a main priority of the Stockholm International Convention in 2001 as a persistent organic pollutant (POPs) [[38]3], PCBs present continued risks because of their persistence, refractory nature, and ease of accumulation. Of the 209 PCBs congeners, 78 display axial chirality in their nonplanar conformation, and 19 are stable at ambient temperatures. Enantiomers of chiral PCBs have different biological and toxicological characteristics. Interestingly, the enantiomer fraction (EF) of PCB95 has opposite effects in fish (EF<0.5) and bivalves (EF >0.5) [[39]4]. Moreover, enantiomers of PCB139 exhibit different potencies in inducing cytochrome P450 activity [[40]5]. Therefore, it is necessary to evaluate the enantioselective effects of chiral PCBs on environmental problems and their risk to human health and the ecological environment. Metabolomics is a relatively new omics technology involving the comprehensive measurement of small-molecule metabolites in organisms and has been widely used in the study of drug toxicity mechanisms and disease. Rat and zebrafish have recently been used as models for metabolomic and genomic research [[41]6,[42]7], similarly to research on human diseases such as cancer [[43]8] and neurodegenerative diseases [[44]9]. Several metabolomic studies of the effects of PCBs in rats have demonstrated that PCBs and tetrachlorodibenzo—p-dioxin (TCDD) can lead to immune system disturbances, liver and nervous system dysfunction, and lipid metabolism perturbation [[45]10]. However, few studies have reported metabolomics analysis of PCB enantiomers in organisms. Therefore, in this study, we used ultra-high performance liquid chromatography and tandem mass spectrometry (UPLC-MS/MS) to study the enantioselective toxic effects of chiral PCB95 in zebrafish (Danio rerio) embryos based on metabolomics. Materials and Methods Reagents and materials A Milli-Q water purification system (Millipore, France) was used to prepare deionized water (18.2 MΩ). HPLC-grade 96% formic acid (MREDA, USA) and acetonitrile (Fisher Scientific, USA) were used as solvents. Methanol, n-hexane, and dichloromethane were HPLC grade and purchased from Fisher Scientific (USA). A mixed standard solution consisting of 26 compounds, including amino acids, organic acids, amines, and choline, was purchased from the National Institute of Metrology (China). The PCB95 standard was purchased from AccuStandard (purity>98%; USA). The enantiomers of chiral PCB95 were separated and quantified by Waters 2695 HPLC with an ultraviolet detector (USA) at 220 nm and a Lux 5 μm cellulose-3 column (250mm×4.6mm×5 μm; Phenomenex, USA) at 30°C. The flow rate was 1 mL/min, and the mobile phase was 100% of n-hexane. The injection volume was 20 μL. The order of elution of the enantiomers of PCB95 was confirmed using an online optical rotation detector (IBZMESSTECHNIK, Germany). The first eluted enantiomer was (-)-PCB95, and the second enantiomer was (+)-PCB95. The purity of the two enantiomers was greater than 98%. This method was validated previously in a comprehensive study [[46]11]. Sample collection and preparation Fish husbandry and embryo collection Specific pathogen-free AB line zebrafish (Danio rerio) were cultured in a temperature-controlled laboratory (28±0.5°C) with a 14h:10h light/dark cycle. The conductivity of the water used for the zebrafish was 480+20 μS/cm, and the pH was adjusted to between pH 6.5 and 8.5 [[47]12]. The fish were fed fresh frozen Artemia (Binhaijun Industry Co. Ltd, China) three times daily. Embryos were collected within 0.5 h post fertilization (hpf; male/female ratio of 1:1 or 1:2) and were rinsed with water. Exposure of zebrafish embryos This study was performed in conformity with Chinese legislation and approved by the independent animal ethics committee at the Chinese Academy of Agricultural Sciences. Chemical exposure was initiated at 5–6 hpf. The embryos were randomly allocated to three exposure groups: the racemic group, (-)-PCB95 group, and (+)-PCB95 group. The three exposure groups were each treated with three dose levels (high, middle, and low), yielding a total of 10 treatment groups, including one control group. All of the treatment groups were performed in ten replications (10 plastic petri dishes per group), with 20 embryos per sample and 200 embryos per treatment group. Zebrafish embryos were exposed for 72 h at 28 ± 0.5°C with a 14 h: 10 h light/dark cycle in constant temperature incubator. The treatment volume is 40 mL per petri dish, and the exposure solutions were completely renewed every 24 h [[48]13]. Acetone was used as the solvent to prepare the stock solution, and the solvent concentration was 0.01%. The high-, middle-, and low-dose test solutions were 10, 1 and 0.1 μg/L respectively, and the control was only treated with 0.01% acetone. After the 72 h treatment, the embryos were collected in 1.5 mL tubes, washed three times, and snap-frozen in liquid nitrogen, and then stored at -80°C until extraction. Sample preparation The embryo samples were thawed at room temperature and thoroughly homogenized in 100 μL of cold methanol on ice. Next, 140 μL of cold methanol, 195 μL of distilled water, and 240 μL of dichloromethane were added to the homogenate. The samples were then shook for 1 min, incubated on ice for 10 min, and centrifuged at 12000× g for 5 min at 4°C to remove protein and tissue debris [[49]14,[50]15]. After centrifugation, 100 μL of the upper polar layer was transferred to a 1.5-mL glass vial and diluted 10-fold with methanol/water (50:50, v/v) containing 0.25% formic acid for UPLC-MS/MS analysis. To evaluate the reliability of the preparation method, a standard solution containing 26 different types of compounds was added to blank extraction solvent at concentrations of 20, 100 or 200 μg/L before preparation. A quality control (QC) sample was prepared by mixing equal volumes from each embryo sample after preparation. The QC sample and the standard solution were analyzed before and during the sequence to estimate the method reliability. UPLC-MS/MS analysis UPLC-MS/MS analysis was performed using a Waters UPLC system with a QTrap 6500 mass spectrometer (AB SCIEX, USA) in positive ion mode. The secondary mass spectrum information for 76 small polar compounds selected from the MassBank ([51]www.massbank.jp/) database based on references was used for the MRM scanning module. The prepared samples