Abstract In this study, a fingerprint-activity relationship between chemical fingerprints and hepatoprotective activity was established to evaluate the quality of salt-treated Apocyni Veneti Folium (AVF). Characteristic fingerprints of AVF samples exposed to different concentrations of salt were generated by ultrafast liquid chromatography tandem triple time-of-flight mass/mass spectrometry (UFLC-Triple TOF-MS/MS), and a similarity analysis was performed based on common characteristic peaks by hierarchical clustering analysis (HCA). Then, the hepatoprotective activity of AVF against CCl[4]-induced acute liver damage in mice was investigated by assessing biochemical markers and histopathology, which showed that a high dose of AVF exposed to low levels of salt stress produced a marked amelioration of hepatic damage compared with the other salt-treated AVF. Finally, fingerprint-activity relationship modeling, which was capable of discovering the bioactive markers used in the quality evaluation, was investigated by the chemical fingerprints and the hepatoprotective activities utilizing multivariate statistical analysis, gray correlation analysis (GCA) and bivariate correlation analysis (BCA). The results showed that the accumulation of polyphenols, such as flavonoids and phenolic acids, in AVF subjected to low levels of salt stress could result in the effective scavenging of free radicals. Therefore, the present study may provide a powerful strategy to holistically evaluate the quality of salt-treated AVF in combination with chemical fingerprint and bioactivity evaluation. Subject terms: Salt, Secondary metabolism, Mass spectrometry Introduction Apocynum venetum L., as one of the known medicinal halophytes, has attracted much attention in terms of its antioxidant properties associated with human well-being. This plant grows widely in China, especially in a variety of saline habitats, and therefore, it is characterized by a high physiological plasticity for salt tolerance. Salinity has adverse effects on all aspects of plant health by activating salinity-induced molecular networks associated with salt stress perception, ion and osmotic homeostasis, and regulation of stress-related genes, proteins and metabolic pathways^[42]1,[43]2. However, halophytes develop a robust and sophisticated protective system and accumulate secondary metabolites under appropriate levels of salt stress, which may be responsible for maintaining homeostasis and protecting against excessive reactive oxygen species-induced oxidative stress^[44]3. Apocyni Veneti Folium (AVF) contains abundant bioactive compounds, including the main and prominent antioxidative constituents of phenolic acid and flavonoids^[45]4. Modern pharmacological studies have demonstrated that AVF has anti-hypertension, anti-depressant, hepatoprotection, anti-anxiety, antioxidation and diuretic functions^[46]5,[47]6. In the Chinese Pharmacopoeia (2015 edition), hyperoside, a stable active ingredient of AVF occurring at a high concentration, was selected as the marker for the quality control analysis of AVF^[48]7. In fact, most published reports quantify one or a limited number of components to achieve quality evaluation^[49]8,[50]9. However, considering the fluctuations in chemical compositions and contents on the basis of many factors, such as abiotic stress, cultivation region and harvest time, it is difficult to achieve consistent quality in medicinal herbs^[51]3. Furthermore, it is generally recognized that Chinese medicines exert therapeutic efficacies holistically through a ‘multicomponent, multitargeted, and multipathway’ mode^[52]10. In addition, as mentioned above, AVF is composed of many bioactive components, and its therapeutic effects are not confined to the individual or simple effects of a single bioactive component. Therefore, it is necessary to establish a truly meaningful protocol to effectively and systematically achieve quality control of this plant. The fingerprint test proved to be a useful tool in assessing the chemical consistency of traditional Chinese medicine (TCM) and has been widely accepted by the World Health Organization (WHO), China Food and Drug Administration (CFDA), the United States Food and Drug Administration (FDA), and European Medicines Agency (EMEA). Several chromatographic techniques, including liquid chromatography (LC)^[53]11, gas chromatography (GC)^[54]12, thin-layer chromatography (TLC)^[55]13, and high-performance capillary electrophoresis (HPCE)^[56]14, have been used to construct chemical fingerprints of AVF, which has allowed researchers to visualize and identify as many components of the plant as possible. Among these techniques, a high-performance liquid chromatography (HPLC) system is typically employed to establish the chemical fingerprints and quality assessment of AVF because of its ease of operation, high selectivity, and accuracy^[57]9,[58]11,[59]15. However, limits of this HPLC system include the identification of unknown components. Accurate masses and molecular formulae of untargeted compounds acquired from LC coupled with mass spectrometry/mass spectrometry (LC-MS/MS) have been used to predict and find such components^[60]5,[61]16,[62]17. In particular, triple time-of-flight mass spectrometry/mass spectrometry (Triple TOF-MS/MS) is considered to be the first accurate, high-throughput and high-resolution system of its kind and operates by means of information-dependent acquisition^[63]18,[64]19. Therefore, the ultrafast liquid chromatography (UFLC)-Triple TOF-MS/MS system could be introduced to obtain AVF chemical fingerprints. Although similarity analysis of chromatographic fingerprints can directly reflect whether an analyzed sample is chemically similar to others, it alone cannot assess quality consistency. Many studies have proven that samples with high similarity values do not always exhibit the expected equivalent efficacies^[65]20,[66]21. Hence, fingerprint-activity relationship modeling correlating major components to bioactivity is meaningful to achieve quality consistency and discover bioactive markers^[67]22–[68]25. Liver injury induced by carbon tetrachloride (CCl[4]) is one of the most widely used experimental models^[69]26. Increased serum alanine aminotransferase (ALT), aspartate aminotransferase (AST), and hepatic malondialdehyde (MDA) contents along with decreased superoxide dismutase (SOD), catalase (CAT) and peroxidase (POD) activities demonstrate hepatotoxicity induced by CCl[4] in mice^[70]27. Many published studies have indicated that natural substances, such as phenolic acids and flavonoids from plants, exhibit strong antioxidative activity that could act against CCl[4]-induced liver damage^[71]28,[72]29. References have shown that AVF has protective