Abstract Background Recent studies have extensively investigated the roles of miR-106 in colorectal cancer (CRC). However, the associations and molecular mechanism underlying the roles of miR-106 in CRC remain unclear. We aimed to thoroughly investigate the biomarker roles of miR-106 for predicting the risk and survival outcome in CRC. Methods We first conducted a comprehensive meta-analysis to quantitatively evaluate the roles of miR-106 in the diagnosis and prognosis of CRC. Then, we qualitatively explored the biomarker roles of miR-106 in CRC through an integrative bioinformatics analysis. Results The results indicated that miR-106 yielded a combined AUC of 0.79 (95% CI: 0.76–0.83), with a pooled sensitivity of 0.50 (95% CI: 0.32–0.68) and a pooled specificity of 0.93 (95% CI: 0.79–0.98) for discriminating CRC cases from normal controls. Moreover, patients with higher expression of miR-106 were significantly associated with shorter disease-free survival (HR: 1.73; 95%CI: 1.23–2.44) and overall survival (HR: 1.39; 95%CI: 1.09–1.77). Finally, gene ontology and pathway analysis demonstrated that miR-106 family was highly involved in the initiation and progression of CRC and indicated the potential molecular mechanism for miR-106 in CRC. Conclusions Our results indicated that miR-106 showed promising potential as diagnostic and prognostic biomarker for CRC. Nevertheless, the underlying molecular mechanism of miR-106 family involved in CRC requires further investigation. Keywords: Colorectal cancer, Biomarker, Meta-analysis, Bioinformatics Background Colorectal cancer (CRC) remains as one of most prevalent malignancies in both developed and developing countries, and it has become a global public health concern due to high mortality [[35]1]. As early symptoms of CRC patients are not typical, most of the CRC cases occur in locally advanced stages when the overall 5-year survival rate are very low. Although a series of predictive methods for diagnosis and prognosis of CRC are available, their clinically application values are limited due to high costs, lack of sensitivity or inconvenience [[36]2]. Thus, new, invasive and more specific methods for early detection and survival prediction are necessary to improve the survival status for CRC patients [[37]3]. MicroRNAs (miRNAs) are a group of small non-coding RNA molecules, which play fundamental roles in regulating gene expression through inhibiting mRNA translation or inducing degradation of the mRNA, and then participate in a wide variety of key physiological processes including cell growth, differentiation, invasion and metastasis [[38]4]. In recent years, numerous studies have suggested that miRNAs may provide a new idea as biomarkers for tumor diagnosis, prognosis and prediction of efficacy [[39]5]. As one of the most common studied miRNA biomarkers, miR-106 has gained great attention as a novel biomarker in cancer detection and survival prediction [[40]6]. Several studies have previously indicated that miR-106 could be specifically used as a promising diagnostic marker for distinguishing CRC patients from normal subjects [[41]7]. Moreover, miR-106 expression level seems to be correlated with CRC patient survival [[42]8]. Nevertheless, different confounding factors, such as sample sources, sample sizes, detection methods, may result in inconsistent and conflicting conclusions. Moreover, the pathological mechanisms of miR-106 involved in CRC are still not fully understood. Therefore, this study aimed to quantitatively determine the potential biomarker value of miR-106 family and provide a more comprehensive and reliable conclusion on the relationship between miR-106 expression and the diagnosis and prognosis of CRC; in addition, an integrated bioinformatics was performed for uncovering the biomarker functions of miR-106 family at the systems biology level. Methods Search strategy Relevant studies published before May 20, 2019 were screened through a search in PubMed, EMBASE, Web of Science, and Cochrane Library databases using the following terms: (“colorectal” or “rectal” or “rectum” or “colon” or “CRC”) and (“cancer”, “carcinoma”, “tumor”, “neoplasm”) and (“microRNA-106” or “miRNA-106” or “miR-106” or “miRNA106”). In addition, we manually examined the references from