Abstract Urinary metabolomics is a useful non-invasive tool for large-scale screening of disease-related metabolites. However, no comprehensive urinary metabolomic analysis of vitiligo is presently available. To investigate the urine metabolic pattern of vitiligo patients, we conducted a combined cross-sectional and prospective self-control cohort study and an untargeted urinary metabolomic analysis. In the cross-sectional study, 295 vitiligo patients and 192 age‐ and sex‐matched controls were enrolled, and 71 differential metabolites between two groups were identified. Pathway enrichment analysis revealed that drug metabolism-cytochrome P450, biopterin metabolism, vitamin B9 (folate) metabolism, selenoamino acid metabolism, and methionine and cysteine metabolism showed significant enrichment in vitiligo patients compared with the status in healthy controls. In the self-control cohort, 46 active vitiligo patients were recruited to analyse the urinary metabolic signatures after treatment. All of these patients were asked to undertake follow-up visits every 2 months three times after first consulting and the disease stage was evaluated compared with that at the last visit. Folate metabolism, linoleate metabolism, leukotriene metabolism, alkaloid biosynthesis, and tyrosine metabolism were predicted to be involved in vitiligo activity. Our study is the first attempt to reveal urinary metabolic signatures of vitiligo patients and provides new insights into the metabolic mechanisms of vitiligo. Subject terms: Immunology, Biomarkers, Diseases Introduction Vitiligo is a common acquired pigmentary disorder characterised by depigmentation of skin resulting from the destruction of epidermal melanocytes. The incidence of vitiligo has been estimated to be 1% of the global population^[38]1. It has major impacts on patients’ social activity and mental health, causing severe distress. Unlike other cutaneous disorders, no erythema or scaling is present in vitiligo lesions. In some atypical or early-stage cases of vitiligo, it is quite difficult to diagnose and differentiate from other hypopigmented diseases^[39]2,[40]3. This may cause a delay in treatment at an early stage and some patients with other diseases can even be misdiagnosed with vitiligo^[41]4. Moreover, the course of vitiligo is unpredictable and it is difficult to assess the treatment response at an early stage^[42]5–[43]7, which means that treatment evaluation is often postponed. Therefore, a biomarker helping physicians to objectively recognise the atypical lesions, follow patients over time, or accurately determine the treatment response at an early stage would be of great value^[44]6,[45]8,[46]9. Many groups have attempted to find vitiligo biomarkers. Clinical signs such as Koebner phenomenon, blurred border, and confetti-like depigmentation have been described as clinical markers of active vitiligo, but these signs only present in a subset of vitiligo patients and are not sufficiently objective^[47]10,[48]11. Skin tissue biomarkers have been reported, such as basal cell vacuolisation^[49]12, CD8^+ lymphocyte infiltration^[50]13, and increased expression of heat shock protein-70^[51]14, CXCL9^[52]15, and sCD25^[53]16. However, skin biopsy is a traumatic examination and it is difficult to apply to patients with more than one active period. Moreover, an overlap in histological findings has been found between active and stable vitiligo^[54]9. Blood biomarkers of vitiligo, including soluble CDs (sCD25, sCD27)^[55]6, chemokines (CXCL9, CXCL10)^[56]17, S100B^[57]11, cytokines (IL-1β, IL-10, IL-17)^[58]18,[59]19, and homocysteine^[60]20, have been reported to be related to the occurrence and activity of vitiligo. However, these markers still need further clinical verification and different studies on them have even shown contrasting results^[61]9. Thus, there is a need for more study to find non-invasive biomarkers that could help to diagnose and monitor the stage of vitiligo. Metabolomics is a widely used biological approach for identifying and measuring the changes in biological samples^[62]21,[63]22. Urine examinations are considered as non-invasive, rapid diagnostic methods that have been used in scientific research and clinical applications. Recent studies have shown that urine metabolomics has become a useful method to identify biomarkers for some skin diseases, such as psoriasis^[64]23, dermatomyositis^[65]24, melanoma^[66]25, syphilis^[67]26, and atopic dermatitis^[68]27. However, to date, few studies focusing on changes in urine metabolites in vitiligo patients have been performed. Previous metabolic studies mostly focused on a few metabolites in vitiligo, such as urinary catecholamines and vanillylmandelic acid on a small scale^[69]28,[70]29. However, no comprehensive urinary metabolomic analysis of vitiligo is currently available. In this study we conducted a urine metabolomic analysis in a cross-sectional and prospective self-control cohort, and attempted to identify the metabolic biomarkers for both the diagnosis and the treatment response of vitiligo patients. We first analysed the urine samples from 295 Chinese vitiligo sufferers who volunteered to participate and 192 healthy controls, along with investigating the metabolic features and biomarkers of the vitiligo patient group. Then, in the self-control cohort, we targeted the active patients and investigated the variation in urine metabolites after treatment. The analysis contributes to our ability to diagnose this disease, revealing metabolic changes involved in disease activity, and helping to identify the urinary metabolic patterns in different effective stages and potential biomarkers for treatment responses (Fig. [71]1). Our study is the first attempt to reveal urinary metabolic signatures of vitiligo patients. These results might be helpful to explore the metabolic changes involved in the pathogenesis of vitiligo, and to diagnose this disease and monitor its treatment response in a clinical setting. Figure 1. [72]Figure 1 [73]Open in a new tab The work flow of this study. Results Clinical characteristics Discovery cohort and validation cohort Urine samples (midstream) were randomly divided into a discovery cohort of 211 vitiligo patients and 113 age- and sex-matched healthy human adults, and a validation cohort of 84 vitiligo patients and 79 healthy human adults. Among the 295 vitiligo patients, 19 segmental vitiligo patients were enrolled. Their detailed demographics and disease subtypes are shown in Tables [74]1 and [75]S1. Table 1. Demographics of healthy subjects and vitiligo patients enrolled in this study. DHC (n = 113) DVC (n = 211) p* VHC (n = 79) VVC (n = 84) p^# SAV (n = 46) Average age (years) 25.18 ± 15.61 23.03 ± 13.53 0.26 24.38 ± 14.16 23.21 ± 13.28 0.97 32.7 ± 12.45 Sex 0.48 0.64 Female 55 94 48 48 19 Male 58 117 31 36 27 [76]Open in a new tab DHC: Discovery cohort healthy control. DVC: Discovery cohort vitiligo cases. VHC: Validation cohort healthy control. VVC: Validation cohort vitiligo cases. SAV: Self-control active vitiligo cohort. *p-value of Chi-square test comparing DHC with DVC. ^#p-value of Chi-square test comparing VHC with VVC. Self-control cohort Forty-six active vitiligo patients were recruited at Peking Union Medical College Hospital. Among these patients, 44 patients undertook the first follow-up visit (2 months after the first consultation), 44 patients undertook the second follow-up visit (4 months after the first consultation), and 43 patients undertook the third follow-up visit (6 months after the first consultation; for more details, see Tables [77]1 and [78]S1). By comparing the digital follow-up photographs, wood lamp images, and clinical examination results obtained at the last visit, 104 effective/improved visit points were recorded. Then, we performed metabolic profiling between the different follow-up visits and the baseline among the patients in whom treatment was effective to further investigate whether metabolic profiles could reflect improvement of vitiligo and detect the urine metabolites with a tendency to change in association with this. Urine metabolomic pattern of vitiligo patients compared with healthy controls Metabolites differentially expressed between vitiligo patients and healthy controls were identified To eliminate the potential confounders between the vitiligo and healthy groups, subjects were gender- and age-matched. LC–MS-based urine samples from vitiligo patients and healthy controls yielded 2500 features after quality control (QC) filtering. Tight clustering of the QC samples indicated good repeatability of analysis (Fig. [79]S1). The principal component analysis (PCA) score plot did not show an obvious trend of separation between the vitiligo patients and the healthy controls (Fig. [80]2a). However, the orthogonal partial least squares analysis (OPLS-DA) model achieved better separation (Fig. [81]2b). Permutation tests were carried out to confirm the stability and robustness of the supervised models presented in this study (Fig. [82]S2a). Differential metabolites were assigned based on VIP values > 1 and adjusted p-values < 0.05. In total, 71 differentially expressed metabolites were identified, with 61 metabolites upregulated and 10 downregulated in the vitiligo group compared with the levels in the healthy controls (Table [83]S2). Further metabolic comparison between the 19 segmental vitiligo samples and 19 age- and gender-matched nonsegmental vitiligo samples showed that the two disease types had no significant differences of urine metabolomics (Fig. [84]S2c,d). Figure 2. [85]Figure 2 [86]Open in a new tab Analysis of urine metabolome between vitiligo patients and healthy controls. (a) PCA analysis of urine metabolome. (SIMCA 14.0 software, Umetrics, Sweden) (b) Score plot of OPLS-DA model between vitiligo patients and healthy controls showed a better separation. (SIMCA 14.0 software, Umetrics, Sweden) (c) Pathway enrichment analysis showed significant enrichment (p < 0.05) of several pathways between the two groups. (MetaboAnalyst 3.0, [87]https://www.metaboanalyst.ca) (d) A metabolites panel consisting of 7alpha-hydroxy-3-oxochol-4-en-24-oic acid, deoxyuridine, 3,4-octadienoylglycine, threoninyl-Proline showed the predictive ability with an AUC of 0.807 in the validation cohort. (MetaboAnalyst 3.0, [88]https://www.metaboanalyst.ca). Pathway enrichment analysis showed significant enrichment (p-values < 0.05) of several pathways in the vitiligo group compared with the case in healthy controls, including drug metabolism-cytochrome P450, biopterin metabolism, vitamin B9 (folate) metabolism, selenoamino acid metabolism, and methionine and cysteine metabolism (Fig. [89]2c, Table [90]2). Table 2. Differential metabolic pathways that may involve in vitiligo pathogenesis. Pathways Possible involved function References