Abstract The outbreak of new infectious pneumonia caused by SARS-CoV-2 has posed a significant threat to public health, but specific medicines and vaccines are still being developed. Traditional Chinese medicine (TCM) has thousands of years of experience in facing the epidemic disease, such as influenza and viral pneumonia. In this study, we revealed the efficacy and pharmacological mechanism of Ma Xing Shi Gan (MXSG) Decoction against COVID-19. First, we used liquid chromatography–electrospray ionization tandem mass spectrometry (LC-ESI-MS/MS) to analyze the chemical components in MXSG and identified a total of 97 components from MXSG. Then, the intervention pathway of MXSG based on these components was analyzed with network pharmacology, and it was found that the pathways related to the virus infection process were enriched in some of MXSG component targets. Simultaneously, through literature research, it was preliminarily determined that MXSG, which is an essential prescription for treating COVID-19, shared the feature of antiviral, improving clinical symptoms, regulating immune inflammation, and inhibiting lung injury. The regulatory mechanisms associated with its treatment of COVID-19 were proposed. That MXSG might directly inhibit the adsorption and replication of SARS-CoV-2 at the viral entry step. Besides, MXSG might play a critical role in inflammation and immune regulatory, that is, to prevent cytokine storm and relieve lung injury through toll-like receptors signaling pathway. Next, in this study, the regulatory effect of MXSG on inflammatory lung injury was validated through transcriptome results. In summary, MXSG is a relatively active and safe treatment for influenza and viral pneumonia, and its therapeutic effect may be attributed to its antiviral and anti-inflammatory effects. Keywords: Ma Xing Shi Gan decoction, COVID-19, Traditional Chinese Medicine, immunomodulatory, antiviral __________________________________________________________________ Graphical Abstract. Study design:the workflow for the whole study [44]Graphical Abstract [45]Open in a new tab Introduction The coronavirus disease 2019 (COVID-19) epidemic is a global public health crisis, with considerable mortality and morbidity exerting pressure on health care and the economy. Unfortunately, there are currently no drugs or vaccines available to treat specific antivirals ([46]Zumla et al., 2016; [47]Xie et al., 2020). The majority of patients infected with SARS-CoV-2 show symptoms of pneumonia, fever, dry cough, fatigue, and other symptoms such as myalgia, and diarrhea ([48]Henry and Vikse, 2020; [49]Stower, 2020; [50]Xiong et al., 2020). Like SARS-CoV, the spine (S) protein of SARS-CoV-2 enters human alveolar epithelial cells by binding the angiotensin-converting enzyme 2 (ACE2) receptor ([51]Zhou et al., 2020). At low viral titers, the human immune response may be characterized by the antiviral response to type I interferon and the CD4^+ and CD8^+ T-cell response, leading to viral clearance. Severe infection and excessive immune-inflammatory response caused by high viral titer have been proved to be the leading cause of progression to acute lung injury (ALI), acute respiratory distress syndrome, respiratory and circulatory failure, and even death ([52]Chen et al., 2020; [53]Narasaraju et al., 2020; [54]Wang et al., 2020). Patients with COVID-19 exhibit pathogenesis; clinical manifestations are similar to the symptoms of SARS-CoV and H1N1 infections. Therefore, although the pathogenesis of COVID-19 is poorly understood, the similar mechanisms of SARS-CoV and H1N1 can give us a great deal of information on the pathogenesis of SARS-CoV-2 infection to promote our recognition ([55]Li et al., 2020c). Based on clinical observation of COVID-19 and experience in treating SARS and H1N1, the guideline on diagnosis and treatment of COVID-19 has proposed that combines modern medicine with TCM in China ([56]Liu et al., 2012; [57]Li and Peng, 2013; [58]Dei-Cas et al., 2020). According to the Press Conference of the Joint Prevention and Control Mechanism of State Council, 74,187 people have used Chinese medicine in confirmed cases of COVID-19 in China. It accounted for 91.5% of the total cases. Clinical observation shows that the total effective rate of TCM has reached more than 90% ([59]National Health Commission of the People’s Republic of China, 2020). Ma Xing Shi Gan (MXSG) decoction, was the basic formula of three drugs and three formulas including Lian Hua Qing Wen capsules (LHQW), Jin Hua Qing Gan granules (JHQG), Qing Fei Pai Du decoction (QFPD), Hua Shi Bai Du decoction (HSBD), and Xuan Fei Bai Du decoction (XFBD) promulgated by China’s National Health Commission for the treatment of COVID-19. It has been applied to COVID-19 patients in both suspected cases and confirmed individuals with mild cases, moderate cases, severe cases, and critical cases. A previous study has demonstrated that MXSG exhibits similar antiviral activity to oseltamivir and broad-spectrum inhibitory activity in mice infected with influenza A virus ([60]Li et al., 2017; [61]Zou et al., 2018). This activity has also been confirmed in the LHQW and JHQG treatment of H1N1 patients ([62]Duan et al., 2011; [63]Wang et al., 2011). Also, MXSG can downregulate chemokines, inhibit inflammation response, and ameliorate the ALI in model rats ([64]Ma et al., 2014; [65]Fei et al., 2019). However, the overall understanding of the therapeutic effect and potential mechanisms of MXSG in the COVID-19 remains elusive. Here, we dissected the chemical components of MXSG by liquid chromatography–mass spectrometry (LC-ESI-MS/MS) and analyzed the intervention pathways of MXSG based on components detected through network pharmacology. At the same time, the therapeutic effect of MXSG on COVID-19 was explained through published articles, and the relevant regulatory mechanism was proposed. Then, in this study, the regulatory effect of MXSG on inflammatory lung injury was validated through transcriptome results. In summary, our study suggests that MXSG inhibits viral invasion, proliferation, and mitigation of virus-induced lung injury, which may be a key mechanism of its therapeutic effect on COVID-19. These results provide experience for the treatment of infectious diseases and lung injury. Results Characterization of Chemical Constituents in Ma Xing Shi Gan Decoction Representative total ion chromatograms obtained by LC-ESI-MS/MS are shown in [66]Figure 1. After peak integration, 126 peaks were detected as individual compounds. Based on the MetWare database and the published database of metabolite information, qualitative analysis was conducted on the primary and secondary spectrum data of mass spectrometry. As a result, 97 components were identified from MXSG. The compounds identified from MXSG were listed in [67]Supplementary Table S1, including 40 flavonoids, 18 phenolic acids, 16 alkaloids, 10 terpenes, five lignans and coumarins, one quinone, and other types of compounds. FIGURE 1. [68]FIGURE 1 [69]Open in a new tab Representative total ion chromatogram MXSG. (A) Positive mode. (B) Negative mode. Characterization of Potential Therapeutic Targets of Ma Xing Shi Gan Decoction The potential therapeutic target network of MXSG was presented in [70]Figure 2. We first collected the targets of compounds identified by LC-ESI-MS/MS. Among the 97 compounds detected, 54 corresponding targets were obtained through database retrieval, and a total of 204 targets were obtained after merging and deleting. Then, GO and KEGG enrichment analysis was performed on the target information ([71]Figure 2). In the GO enrichment analysis results, MXSG mainly played an intervention role by interfering with cellular processes and metabolic processes. The intervention mainly affects the cell membrane structure, and the main target molecules participate in the protein binding process and catalytic function. KEGG analysis showed that the role of MXSG was mainly to interfere with tumor-related pathways and viral infection–related pathways. The target information is in [72]Supplementary Table S2. FIGURE 2. [73]FIGURE 2 [74]Open in a new tab Functional analysis of MXSG. (A) GO enrichment of related genes. (B) Top 20 pathways enriched by the KEGG method. Efficacy of Ma Xing Shi Gan Decoction Against COVID-19 From Published Research Evaluation MXSG is one of the most frequently used and valid prescriptions for COVID-19 prevention and control programs. It is the fundamental component of three drugs and three formulas, including LHQW, JHQG, QFPD, HSBD, and XFBD promulgated by China’s National Health Commission. We made a summary of MXSG and its extended formula formulation, effects, and clinical features ([75]Supplementary Table S3). And then, we made a summary of therapeutic effects of MXSG or its extended formula for SARS-CoV-2 or H1N1 infection. The results showed that MXSG was effective in treating influenza or viral pneumonia in both animal and clinical studies. The animal research involved three animal models of type A influenza virus infection, including BALB/c mice, KM mice, and WT mice. In the clinical studies, a total of 4,596 cases patients with SARS-CoV-2 or H1N1 infection were involved, including clinical observation studies, prospective cohort studies, retrospective studies, double-blinded randomized control trials, and randomized double-blind positive controlled clinical trial studies ([76]Table 1). TABLE 1. Efficacy evaluation of MXSG or its extended formula for influenza virus infection. Drug Therapeutic effects Methodology References