Abstract Background Obstructive sleep apnoea (OSA) is the most frequent form of sleep-disordered breathing in patients with Alzheimer’s disease (AD). Available evidence demonstrates that both conditions are independently associated with alterations in lipid metabolism. However, it is unknown whether the expression of lipids is different between AD patients with and without severe OSA. In this context, we examined the plasma lipidome of patients with suspected OSA, aiming to identify potential diagnostic biomarkers and to provide insights into the pathophysiological mechanisms underlying the disease. Methods The study included 103 consecutive patients from the memory unit of our institution with a diagnosis of AD. The individuals were subjected to overnight polysomnography (PSG) to diagnose severe OSA (apnoea-hypopnea index ≥30/h), and blood was collected the following morning. Untargeted plasma lipidomic profiling was performed using liquid chromatography coupled with mass spectrometry. Results We identified a subset of 44 lipids (mainly phospholipids and glycerolipids) that were expressed differently between patients with AD and severe and nonsevere OSA. Among the lipids in this profile, 30 were significantly correlated with specific PSG measures of OSA severity related to sleep fragmentation and hypoxemia. Machine learning analyses revealed a 4-lipid signature (phosphatidylcholine PC(35:4), cis-8,11,14,17-eicosatetraenoic acid and two oxidized triglycerides (OxTG(58:5) and OxTG(62:12)) that provided an accuracy (95% CI) of 0.78 (0.69–0.86) in the detection of OSA. These same lipids improved the predictive power of the STOP-Bang questionnaire in terms of the area under the curve (AUC) from 0.61 (0.50–0.74) to 0.80 (0.70–0.90). Conclusion Our results show a plasma lipidomic fingerprint that allows the identification of patients with AD and severe OSA, allowing the personalized management of these individuals. The findings suggest that oxidative stress and inflammation are potential prominent mechanisms underlying the association between OSA and AD. Supplementary Information The online version contains supplementary material available at 10.1186/s13195-022-01102-8. Keywords: Alzheimer’s disease, Biomarker, Diagnosis, Lipidomics, Obstructive sleep apnoea, STOP-Bang questionnaire Introduction Alzheimer’s disease (AD) is the main cause of dementia and one of the main causes of disability and death after 75 years of age. Given the increase in life expectancy, its prevalence is expected to increase drastically in the coming years [[47]1]. Currently, there is a lack of drugs that can cure or manage the disease long-term. Therefore, it is important to identify all the factors that we can modify to avoid both the appearance and progression of this disease. In recent years, different sleep disorders, including their duration and quality, have been shown to be risk factors for the development of AD. Of all known sleep disturbances, the presence of obstructive sleep apnoea (OSA) has been consistently identified as a risk factor for AD in population studies AD [[48]2, [49]3]. Studies on cognitively healthy elderly subjects with OSA have reported increased amyloid β-42 (Aβ-42) and phosphorylated tau (p-tau) levels as measured in the cerebrospinal fluid (CSF) or on positron emission tomography (PET) [[50]4]. In addition, longitudinal studies have reported an increase in the speed of cerebral amyloid accumulation promoted by OSA [[51]5]. Its prevalence in patients with AD ranges between 45 and 90%, presenting as severe OSA in up to 40% of AD patients [[52]6]. Clinically, although some studies have shown that the presence of OSA advances the age of diagnosis of mild cognitive impairment (MCI) and AD, suggesting that it could accelerate the progression of these diseases in the early stages [[53]7], and that continuous positive airway pressure (CPAP) can improve short-term cognitive performance [[54]8], other longitudinal studies have not observed that the presence of OSA worsens the cognitive evolution of patients with mild–moderate AD [[55]9]. The high prevalence of OSA in patients with AD makes the diagnosis of OSA essential, given that it is also a risk factor for hypertension, diabetes, heart failure, stroke or depression, all of which are risk factors for AD [[56]10, [57]11]. However, the study of sleep in these patients is complex. Although polysomnography (PSG) is the technique of choice, the need to go to the hospital to sleep one or two nights often limits its usefulness in patients with AD and can generate sleep data that do not correspond to the patient’s usual routine at home [[58]12]. In addition, simple screening questionnaires, including the STOP-Bang questionnaire (SBQ) [[59]13] and the Berlin questionnaire (BQ) [[60]14], have been shown to be insufficient for identifying subjects at risk of OSA in this type of population [[61]15]. Thus, the search for new screening tools to detect OSA in this population remains. Lipidomics is the science of the large-scale determination of individual lipid species in biological samples and has demonstrated great potential in the search for disease-associated biomarkers. OSA is a pathologic condition that is strongly associated with systemic lipid dyshomeostasis [[62]16]. In addition, OSA can increase lipoxidation, as has been evidenced in both the brain and blood of AD patients [[63]17, [64]18]. Therefore, the identification of systemic alterations in lipid species using high-performance lipidomic platforms could contribute to finding OSA-associated lipid profiles in AD and increase our understanding of the relationship between these two complex pathological conditions. Therefore, the aim of our study was (i) to evaluate whether the expression pattern of circulating lipids is different between AD patients with and without severe OSA, which would be of great relevance for the practical and noninvasive screening of OSA among patients with AD; (ii) to investigate whether the severity of OSA is correlated with changes in plasma lipid levels; and (iii) to evaluate the diagnostic performance of lipidomics findings in joint use with classic screening tests such as the SBQ. Materials and methods Study population This is an ancillary study from trial [65]NCT02814045 that was conducted in the Cognitive Disorders Unit of the Hospital Universitari Santa Maria (Lleida, Spain) from November 2014 to November 2017 to evaluate the cognitive evolution of AD patients with and without OSA after 1 year of follow-up. The patients were recruited prospectively and consecutively according to the eligibility criteria: (1) males and females above 60 years without specific treatment for dementia at the moment of inclusion and with a new diagnosis of mild or moderate AD (Mini-Mental State Examination (MMSE) score ≥20) according to the National Institute on Aging–Alzheimer’s Association (NIA-AA) criteria [[66]19]; (2) absence of visual or hearing problems that, in the investigator’s judgement, would decrease compliance with the neuropsychological examination; (3) signed informed consent from the patient and the responsible caregiver (and/or if applicable, the legal representative if different from the responsible caregiver); and (4) a knowledgeable and reliable caregiver accompanying the patient to all clinic visits during the study. The exclusion criteria were as follows: (1) a previous diagnosis of OSA treated with CPAP; (2) severe AD, other types of dementia or patients with mild–moderate AD with current acetylcholinesterase inhibitor treatment or memantine; (3) presence of any previously diagnosed sleep disorder: narcolepsy, severe insomnia or chronic lack of sleep; (4) comorbidities such as cancer, severe depression, severe renal or hepatic insufficiency and severe cardiac or respiratory failure; and (5) the presence of excessive somnolence for unknown reasons. All exclusion criteria are available in the paperwork for [67]NCT02814045. Study design Patients with mild–moderate AD who gave consent to participate in the study underwent a detailed interview regarding personal history, a general clinical examination for associated conditions and comorbidities and anthropometric data collection. At baseline, participants were evaluated by a polysomnographic study, and blood and CSF samples were obtained to determine the APOE genotype and the levels of Aβ42, total tau (t-tau) and p-tau, respectively. Eligible individuals were selected and classified as severe OSA (apnoea-hypopnea index [AHI] ≥30/h) and nonsevere OSA (AHI <30/h) patients based on the PSG findings. Only those with a complete PSG and available blood samples for determining the plasma lipidome were included in the present study. All participants underwent cognitive assessment using the MMSE [[68]20]. Seventy patients also underwent a semistructured sleep questionnaire that included the SBQ for the detection of OSA. The SBQ comprises 8 items requiring dichotomous responses related to OSA, snoring, tiredness, observed sleep apnoea, high blood pressure, body mass index (BMI), age, neck circumference and sex. The score ranges from 0 to 8, with the highest scores associated with a high probability of OSA. A cut-off score of ≥ 3 is considered high risk of moderate/severe OSA, and <3 is considered low risk [[69]13]. Clinical variables The following variables were collected: age, sex, years of education, unhealthy habits (alcohol consumption and smoking), vascular risk factors (hypertension, diabetes mellitus, dyslipidaemia, stroke and heart diseases) and personal psychiatric history. BMI was calculated as body weight (in kg)/height (in m^2). Excessive daytime sleepiness was evaluated by the Epworth Sleepiness Scale (ESS) and was defined as a total ESS score > 10 [[70]21]. Polysomnography (PSG) PSG was performed according to international guidelines to classify the patients as nonsevere OSA (AHI <30/h) or severe OSA (AHI ≥30/h) patients. The following devices were used: an Embletta® sleep monitor (Embla, Canada), a Sibelmed Exea Series 5 (Sibel SAU, Spain), a Philips Respironics Alice 6 LDx (Philips, USA) and an ApneaLink Resmed (Resmed, Canada). Apnoea was defined as the absence of airflow for more than 10 s. Hypopnea was defined as a reduction in airflow that lasted more than 10 s leading to arousal or oxygen desaturation (represented by a decrease in oxygen saturation greater than 3%). The AHI was defined as the number of apnoea and hypopnea events per hour during the time spent sleeping. CT90 was defined as the percentage of cumulative sleep time with oxyhaemoglobin saturation (SpO2) <90%. The arousal index was defined as the number of awakening events per hour after sleep onset. Genetic analysis DNA was extracted from buffy coat cells using a Maxwell® RCS blood DNA kit (Promega, USA). APOE genotyping was performed using TaqMan® SNP genotyping assays (C_3038793_20 and C_904973_10) and real-time polymerase chain (PCR) according to the manufacturer’s user guide (Publication No. MAN0009593, revision B.0). Cerebrospinal fluid (CSF) biomarkers All patients underwent lumbar puncture between 8:00 and 10:00 am to avoid variations related to the circadian rhythm. Samples were collected in polypropylene tubes, centrifuged at 2000 × g for 10 min at 4°C and stored at −80°C until use. The levels of CSF Aβ42 (Innotest® β-Amyloid (1-42)), t-tau (Innotest® hTAU Ag) and p-tau (Innotest® Phospho-Tau (181P)) were determined by the enzyme immunoassay method according to the manufacturer’s instructions (Fujirebio Europe, Ghent, Belgium). All samples were measured in duplicate and expressed in pg/ml. Samples were obtained with support from IRBLleida Biobank (B.0000682) and PLATAFORMA BIOBANCOS PT17/0015/0027. Lipidomic profiling The plasma lipidome of patients was determined using untargeted lipidomic analysis. The lipids were extracted based on a previously published and validated method [[71]22]. Lipid extracts were analysed via ultrahigh-performance liquid chromatography (UHPLC) coupled with electrospray ionization quadrupole time of flight (ESI-Q-TOF) tandem mass spectrometry (MS/MS) according to a previously published method [[72]23, [73]24] using an Agilent 1290 liquid chromatography system (Agilent Technologies, Santa Clara, CA, USA) coupled with a 6520 ESI-Q-TOF mass spectrometer (Agilent Technologies, Santa Clara, CA, USA) was used. Data were acquired in both positive and negative ionization modes. Lipidic identification The differentially expressed features were identified in the Human Metabolome Database (HMDB) [[74]25] according to the exact mass and retention time, while the molecular weight tolerance was adjusted to 30 ppm. Potential identities were confirmed by comparison of the exact mass, retention time and MS/MS spectral fragmentation pattern of the class representative internal standards, when available, with a public database using the LC–MS/MS search module of the HMDB web server, as well as Lipidmatch and MSDIAL software [[75]26]. Pathway enrichment analysis The annotated differential lipids were searched against the KEGG library of H. sapiens. Pathway enrichment analysis was performed through the MetaboAnalyst web service ([76]http://www.metaboanalyst.cat/) [[77]27]. A hypergeometric test was applied for overrepresentation analysis. p values regarding significantly affected pathways were adjusted for the false discovery rate (FDR). Statistical analyses Descriptive statistics were used to summarize the characteristics of the study population. Continuous variables were summarized using the mean (standard deviation) for normally distributed data and the median (25th percentile; 75th percentile) for nonnormally distributed data. The normality of the distributions was assessed by the Shapiro–Wilk test. Categorical data were summarized using frequency (percentage). Clinical and sociodemographic characteristics of the patients were compared between groups separated according to the OSA status (AHI ≥ 30 vs. AHI <30) using the t test (or an equivalent nonparametric test) or the chi-squared test depending on whether the variables were quantitative or categorical, respectively. Lipid levels were log-transformed for statistical purposes. Linear models with empirical Bayes statistics were used to evaluate differences in lipid levels between groups [[78]28]. Models for differential expression between groups were adjusted for age, sex and body mass index (BMI). Lipids with a significant difference (p value <0.05) between groups and a fold change (FC) higher than 1.25 (or lower than 0.8 for downregulated lipids) were considered differentially expressed. Differential expression between study groups was displayed in volcano plots. Correlations between differentially expressed lipids and PSG parameters were evaluated using Pearson’s correlation coefficient. Furthermore, the variable importance, calculated as the average of 50 runs of random forests, was calculated for each differentially expressed lipid. A feature selection process based on the random forest algorithm [[79]29] was performed to construct a lipidomic signature that predicted severe OSA. This feature selection process is suitable for high-dimensional data and was applied to the differentially expressed lipids identified and repeated 10 times to account for variability in the selection process. The lipids selected in some executions of the process were included in the candidate set for the final predicted model. The candidates were included as predictors in a logistic model with OSA status as a response. The best model, based on the Akaike information criterion (AIC), included the lipids that composed the final lipidomic signature. The accuracy (95% confidence interval (CI)) of the model was estimated and compared. Receiver operating characteristic (ROC) curves were constructed for the lipidomic signature and the reference questionnaire (STOP-Bang), and the area under the ROC curve (AUC) was used as the global discrimination value measure. p values <0.05 were considered to indicate statistical significance. All statistical analyses were performed using R software, version 4.0.2. Results Characteristics of the sample A total of 103 consecutive mild–moderate AD patients with clinical data and plasma samples were included in the study. The mean (SD) age of the population was 75.49 (5.62) years; 59 (57.28%) participants were women, and the MMSE score was 23.5 (2.38) points. Arterial hypertension was the most frequent vascular risk factor, present in 60 (58.25%) patients, followed by dyslipidaemia in 47 (45.63%) participants and diabetes in 19 (18.44%) participants. Regarding the sleep parameters, the mean ESS was 5.57 (4.09), and the mean AHI was 29.53 (21.85). Sixty-three patients were considered to have nonsevere OSA (AHI <30), and 40 patients were considered to have severe OSA (AHI≥30). The characteristics of the patients at baseline were similar between the severe OSA and nonsevere OSA groups. The baseline characteristics by OSA status are summarized in Table [80]1. Table 1. Characteristics of Alzheimer’s disease patients according to their obstructive sleep apnoea (OSA) status. BMI body mass index, AD Alzheimer’s disease, AHI apnoea-hypopnea index per hour, CSF cerebrospinal fluid, APOE Ɛ4 apolipoprotein epsilon 4, MMSE Mini-Mental State Examination, ACE angiotensin-converting enzyme, OSA obstructive sleep apnoea, SaO2 oxygen saturation, CT90 time with SaO2 <90% All (n=103) Non-severe OSA (AHI<30/h) (n = 63) Severe OSA (AHI≥30/h) (n = 40) p value Demographic characteristics  Age at baseline visit (years), median [IQR] 76.0 [72.0; 80.0] 75.0 [71.5; 79.5] 78.0 [72.8; 80.0] 0.14  Gender (female), n (%) 61 (59.2%) 42 (66.7%) 19 (47.5%) 0.085  Education (years), mean (SD) 7.31 (2.68) 7.46 (2.32) 7.08 (3.19) 0.511  BMI (kg/m^2), mean (SD) 27.7 [25.0; 31.1] 27.6 [24.7; 30.6] 28.1 [26.8; 32.4] 0.081 Medical disorders  Hypertension (yes), n (%) 60 (58.3%) 37 (58.7%) 23 (57.5%) 0.999  Diabetes (yes), n (%) 19 (18.4%) 13 (20.6%) 6 (15.0%) 0.999  Hypercholesterolaemia (yes), n (%) 42 (40.8%) 24 (38.1%) 18 (45.0%) 0.625  Depression (yes), n (%) 29 (28.2%) 18 (28.6%) 11 (27.5%) 0.999  Smoker 0.662   Nonsmoker, n (%) 82 (79.6%) 48 (76.2%) 34 (85.0%)   Current, n (%) 1 (0.97%) 1 (1.59%) 0 (0.00%)   Former, n (%) 20 (19.4%) 14 (22.2%) 6 (15.0%)  Family history of AD (yes), n (%) 40 (38.8%) 21 (33.3%) 19 (47.5%) 0.219  Use of acetylcholinesterase inhibitors or memantine (yes), n (%) 98 (95.1%) 60 (95.2%) 38 (95.0%) 0.999 Polysomnography parameters  AHI (events/h), median [IQR] 23.6 [12.2; 47.7] 15.0 [7.47; 20.3] 52.2 [42.3; 62.0] <0.001  CT90, % 2.20 [0.31; 9.31] 1.12 [0.18; 4.86] 5.80 [1.07; 14.9] 0.004  Mean SaO2, % 93.0 [92.0; 94.0] 93.0 [92.0; 94.0] 93.0 [92.0; 93.0] 0.269  Minimum SaO2, % 84.0 [79.0; 87.0] 86.0 [82.0; 88.0] 81.5 [78.0; 85.0] 0.003  Arousal index, events/h 37.6 [26.2; 49.5] 29.0 [19.7; 40.6] 46.1 [40.0; 55.8] <0.001 Epworth Sleepiness Scale (0–24), median [IQR] 5.00 [2.50; 8.00] 5.00 [2.00; 8.00] 5.00 [3.00; 8.00] 0.773 STOP-Bang score MMSE score 23.0 [22.0; 25.0] 23.0 [22.0; 25.0] 24.0 [22.0; 25.0] 0.512 AD biomarkers  Aβ42 CSF (pg/ml), median [IQR] 493 [399; 580] 489 [393; 584] 505 [406; 564] 0.679  Total tau CSF (pg/ml), median [IQR] 494 [350; 696] 494 [369; 707] 469 [346; 684] 0.676  Phospho-tau CSF (pg/ml), median [IQR] 81.0 [55.4; 97.5] 80.0 [58.0; 95.0] 81.0 [55.1; 98.0] 0.929  ApoE Ɛ4 (carrier), n (%) 55 (53.4%) 32 (50.8%) 23 (57.5%) 0.644 Medications  ACE inhibitors, % 32 (31.1%) 21 (33.3%) 11 (27.5%) 0.707  Beta-blockers, % 16 (15.5%) 7 (11.1%) 9 (22.5%) 0.202  Diuretic agents, % 30 (29.1%) 21 (33.3%) 9 (22.5%) 0.339  Calcium-channel blockers, % 13 (12.6%) 9 (14.3%) 4 (10.0%) 0.738  Lipid-lowering agents, % 43 (41.7%) 24 (38.1%) 19 (47.5%) 0.376  Insulin, % 2 (1.94%) 1 (1.59%) 1 (2.50%) 0.999 [81]Open in a new tab Untargeted lipidomic analysis The first objective of the study was to evaluate the differences in the lipidome in patients with and without severe OSA. Nondirected lipidomics was performed by LC–MS. After quality control, 1022 lipids were detected and included in the analyses. After adjusting for confounding factors (age, sex and BMI), 44 differentially expressed lipid species were identified, 11 with reduced (FC from 0.65 to 0.75) and 33 with increased plasma levels in patients with severe OSA (FC from 1.26 to 1.90) (Fig. [82]1A and Fig. [83]S1). Subsequently, we identified a lipidomic prediction model for the detection of severe OSA based on random forest analysis. In Fig. [84]1B, we can see the importance of each lipid in the classification of the study groups (severe OSA vs. nonsevere OSA). Fig. 1. [85]Fig. 1 [86]Open in a new tab Untargeted lipidomic profiling in AD patients with severe OSA. A Volcano plots of the FC (x-axis) and p value (y-axis) for each detected lipid in the comparison of severe OSA vs. nonsevere OSA subjects. Red dots represent significantly downregulated (FC <0.80) molecules, and blue dots represent significantly upregulated (FC> 1.25) molecules in severe OSA patients. The results were adjusted for confounding factors (age, sex and BMI). The p value threshold defining statistical significance was <0.05. B Top 20 significant lipids in the classification of the study groups (severe OSA vs. nonsevere OSA) based on random forest. C Significant correlations between PSG parameters of OSA severity and the differentially expressed lipids. The colour scale illustrates the degree of correlation and ranges from red to blue, indicating negative and positive correlations, respectively. Unknown features are presented as exact mass @ retention time. Definition of abbreviations: AHI apnoea-hypopnea index, LysoPC lysophosphatidylcholine, PG phosphatidylglycerol, FC fold change, OSA obstructive sleep apnoea, PC phosphatidylcholine, PE phosphatidylethanolamine, OxTG oxidized triglyceride, CT90 time with oxygen saturation <90%. For interpretation of the references to colour