Abstract Background The role of periodontal ligament stem cells (PDLSCs) and macrophage polarization in periodontal tissue regeneration and bone remodeling during orthodontic tooth movement (OTM) has been well documented. Nevertheless, the interactions between macrophages and PDLSCs in OTM remain to be investigated. Consequently, the present study was proposed to explore the effect of different polarization states of macrophages on the osteogenic differentiation of PDLSCs. Methods After M0, M1 and M2 macrophage-derived exosomes (M0-exo, M1-exo and M2-exo) treatment of primary cultured human PDLSCs, respectively, mineralized nodules were observed by Alizarin red S staining, and the expression of ALP and OCN mRNA and protein were detected by RT-qPCR and Western blotting, correspondingly. Identification of differentially expressed microRNAs (DE-miRNA) in M0-exo and M2-exo by miRNA microarray, and GO and KEGG enrichment analysis of DE-miRNA targets, and construction of protein–protein interaction networks. Results M2-exo augmented mineralized nodule formation and upregulated ALP and OCN expression in PDLSCs, while M0-exo had no significant effect. Compared to M0-exo, a total of 52 DE-miRNAs were identified in M2-exo. The expression of hsa-miR-6507-3p, hsa-miR-4731-3p, hsa-miR-4728-3p, hsa-miR-3614-5p and hsa-miR-6785-3p was significantly down-regulated, and the expression of hsa-miR-6085, hsa-miR-4800-5p, hsa-miR-4778-5p, hsa-miR-6780b-5p and hsa-miR-1227-5p was significantly up-regulated in M2-exo compared to M0-exo. GO and KEGG enrichment analysis revealed that the downstream targets of DE-miRNAs were mainly involved in the differentiation and migration of multiple cells. Conclusions In summary, we have indicated for the first time that M2-exo can promote osteogenic differentiation of human PDLSCs, and have revealed the functions and pathways involved in the DE-miRNAs of M0-exo and M2-exo and their downstream targets. Supplementary Information The online version contains supplementary material available at 10.1186/s12903-022-02682-5. Keywords: Orthodontic tooth movement; Periodontal ligament stem cells; Macrophage polarization; Exosome, microRNA Introduction Orthodontic tooth movement (OTM) is a process of bone remodeling occurring in periodontal tissues through a series of physiological reactions, with bone remodeling on the tension side of the bone and bone resorption on the pressure side, ultimately achieving tooth movement [[37]1, [38]2]. The periodontium connects the cementum to the alveolar bone through the type I fibers, which maintain the nutritional supply of the orthodontic teeth, and transmit and absorb mechanical stresses [[39]3]. Periodontal ligament stem cells (PDLSCs), a critical cell in periodontal tissue engineering, were first identified by Seo et al. [[40]4] when isolated and cultured from periodontal tissue of third molars. PDLSCs have been shown to have a positive effect on OTM through their multipotential differentiation capacity towards osteogenic, lipogenic and chondrogenic lineages similar to other mesenchymal stem cells, forming new periodontal support tissues to reconstruct the attachment relationship between cementum and alveolar bone [[41]4, [42]5]. Consequently, maintaining and promoting the properties of PDLSCs is essential for OTM. Exosomes are nanoscale vesicles that can be secreted by most cells, with a diameter of about 30–150 nm, and are widely present in various body fluids in the human body. Exosomes carry a variety of biologically active substances, such as proteins, lipids, DNA and RNA, which play an important role in intercellular communication and signal transduction, and are involved in the regulation of biological processes, including the immune response, cell proliferation and differentiation. [[43]6, [44]7]. Previous studies have demonstrated that human exfoliated deciduous teeth (SHED)-derived exosomes can promote osteogenic differentiation of PDLSCs through activation of Wnt and BMP signaling pathways [[45]8]. Bone marrow mesenchymal stem cells (BMSCs)-derived exosomes enhance migration, proliferation and differentiation of PDLSCs to promote periodontal regeneration [[46]9]. Mechanical strain-induced osteocyte-derived exosomes inhibit PTEN/AKT signaling pathway via miR-181b-5p to promote proliferation and osteogenic differentiation of human PDLSCs (hPDLSCs) by BMP2/Runx2 [[47]10]. It is indicated that multiple sources of exosomes contribute to the osteogenic differentiation of PDLSCs, and it is positive to deeply explore the effect of exosomes on PDLSCs for OTM treatment. Macrophages, as one of the main immune cells in the periodontal microenvironment, are involved in OTM. Macrophage polarization exists mainly in the state of classically activated macrophages (M1 macrophages) and alternatively activated macrophages (M2 macrophages) [[48]11, [49]12]. Osteoclasts, which play a major role on the pressure side of the OTM process, are derived from monocytes/macrophages. Earlier studies have shown the presence of M1 macrophages on the stress side of OTM and that the proportion is significantly increased [[50]13, [51]14]. Notably, the interaction between macrophages and PDLSCs via exosomes may be indispensable for repair and regeneration of periodontal tissue and OTM. Previous studies have revealed that PDLSCs induce macrophages towards the M2 phenotype, and contribute to the enhancement of periodontal regeneration during the early stages of tissue repair [[52]15]. Liu et al. [[53]16] also showed that PDLSCs promote M2 polarization in macrophages via the JNK pathway. LPS-stimulated PDLSCs induce M1 polarization of macrophages via extracellular vesicles, which is detrimental to osteogenic differentiation [[54]17]. He et al. [[55]18] indicated that PDLSCs produce H[2]S in response to mechanical stimulation to promote macrophage polarization to the M1 phenotype, which contributes to bone remodeling and OTM. It is suggested that the regulation of macrophage polarization by PDLSCs is an important pathway for periodontal tissue regeneration and OTM. However, it remains to be investigated whether exosomes derived from different polarization states of macrophages have an effect on the osteogenic differentiation of PDLSCs. Based on the above studies, we hypothesized that exosomes derived from different polarization states of macrophages are involved in regulating the osteogenic differentiation process of PDLSCs. Furthermore, we analyzed the differentially expressed microRNAs (DE-miRNA) in M0 macrophage-derived exosomes (M0-exo) and M2 macrophage-derived exosomes (M2-exo) by miRNA microarray. It aimed to elucidate the interaction mechanism between macrophages and PDLSCs in OTM, and to disclose the key factors. Materials and method Induction and identification of macrophage polarization THP-1 cells and complete medium were purchased from National Collection of Authenticated Cell Cultures (China; Cat. No.: TCHu 57). THP-1 cells were inoculated in complete medium and cultured in incubator conditions of 37 °C, 5% CO[2], and 90% humidity. THP-1 cells (1 × 10^6 cells /mL) were inoculated in 6-well plates and M0 macrophages were induced by stimulation with 100 ng/ml PMA (Solarbio, China) for 6 h. M0 macrophages were incubated with 20 ng/ml IFN-γ and 100 ng/ml LPS (Solarbio) for 48 h to induce M1 macrophages. M0 macrophages were incubated with 20 ng/ml IL-4 and 20 ng/ml IL-13 (Solarbio) for 48 h to induce M2 macrophages. Macrophages were collected, and CD68 and CD80, CD16 and CD86, CD163 and CD206 (BD Biosciences, San Jose, CA, USA) were detected using a BD-FACSAria™ Fusion flow cytometer (BD Biosciences, San Jose, CA, USA) to identify M0, M1 and M2 macrophages as described previously, respectively [[56]19, [57]20]. Isolation and identification of macrophage-derived exosomes Briefly, after induction of THP-1 cells (1 × 10^6 cells /mL) into M0, M1 and M2 macrophages, RPMI-1640 complete medium was continued for 24 h and then replaced with serum-free RPMI-1640 medium for 24 h. M0 macrophage-derived exosomes (M0-exo), M1 macrophage-derived exosomes (M1-exo) and M2 macrophage-derived exosomes (M2-exo) were prepared by differential centrifugation. Briefly, the supernatants of M0, M1 and M2 macrophages were collected and centrifuged at 300 g for 10 min to remove cells, at 2000 g for 10 min to remove dead cells and at 10,000 g for 30 min with 4℃ to remove cell debris. Subsequently, the supernatant was transferred to an ultracentrifuge tube and centrifuged at 100,000 g for 90 min with 4℃ to precipitate exosomes. Finally, the exosomes were resuspended in pre-cooled PBS and centrifuged again at 100,000 g for 90 min with 4℃ to obtain exosomes. Moreover, M0-exo, M1-exo and M2-exo were quantified using a spectrophotometer at 405 nm by referring to instructions of EXOCET Exosome Quantitation Assay Kit (System Biosciences, San Francisco, CA, USA). The concentrations of M0-exo, M1-exo and M2-exo were 5.32 (OD[405nm] = 0.09821), 5.96 (OD[405nm] = 0.1059) and 4.36 (OD[405nm] = 0.0867) μg/μl, respectively. According to the standard curve (y = 0.0012x + 0.0176) conversion, 1 × 10^6 THP-1 cells can be separated approximately 6.718 × 10^8 M0-exo, 7.358 × 10^8 M1-exo and 5.758 × 10^8 M2-exo, respectively. The morphological features of M0-exo, M1-exo and M2-exo were observed by Talos F200X G2 TEM transmission electron microscopy (TEM; Thermo Fisher Scientific, Waltham, MA, USA) as previously described [[58]21]. Expression of exosome markers CD9, TSG101 and ALIX were detected by Western blotting for M0-exo, M1-exo and M2-exo and the corresponding supernatants. After identification, the lipid dyes PKH67 (Sigma-Aldrich) were used to label M0-exo, M1-exo and M2-exo by referring to the instructions. Isolation and identification of primary hPDLSCs The hPDLSCs were separated from premolar teeth (15–30 years of age), which required extraction for orthodontic treatment. Inclusion criteria: (1) no systemic disease; (2) no history of smoking; (3) no history of long-term medication use; (4) healthy periodontal tissues. Exclusion criteria: (1) dental tissues with dental disease or inflammation; (2) patients refused to sign the informed consent form. All patient or guardian has signed an informed consent form, and the study has been approved by the Ethics Committee of Hospital of Stomatology, Kunming Medical University/Yunnan Stomatology Hospital (Approval Number: KYKQ2022MEC005). Primary culture of hPDLSCs was performed as described previously [[59]22], and 3–5 generations of hPDLSCs were used for subsequent studies. CD4, CD90, CD34 and CD45 were detected by flow cytometry (BD Biosciences) as previously described [[60]23, [61]24] to identify hPDLSCs. Lipogenic and osteogenic differentiation of hPDLSCs were induced as previously described [[62]24], and were identified using oil red O staining and Alizarin red S staining, respectively. After identification, osteogenic inducers (10–8 mol/L dexamethasone, 50 μg/ml vitamin C and 10 mmol/L sodium β-glycerophosphate) induced osteogenic differentiation of hPDLSCs, and hPDLSCs were treated with 10, 25, 50 and 100 μg/ml of M0-exo, M1-exo and M2-exo, respectively, for subsequent assays. Alizarin red S staining (ARS) On day 21 of osteogenesis induction and exosome treatment, each group of hPDLSCs was fixed with 4% paraformaldehyde at room temperature for 30 min and incubated with 1% alizarin red staining solution (Solarbio) at 37 ℃ for 30 min. Mineralized nodules were observed and photographed under an inverted microscope. The calcified nodules were lysed in alizarin red-stained cells by adding 500 μl of 1% cetylpyridine chloride solution for 1 h. Subsequently, 200 μl of this solution was used to measure the absorbance of the calcified nodules by spectrophotometry at 562 nm. Western blotting assay RIPA buffer (Beyotime, China) and ProteoPrep® Total Extraction Sample Kit (Sigma-Aldrich, St. Louis, MO, USA) were used to lyse hPDLSCs (osteogenesis induction and exosome treatment at d 7 and 21) and exosomes, respectively, to obtain total protein. The concentration of hPDLSCs and total exosomal proteins was measured using BCA Protein Assay Kit (Beyotime). Equal amounts of proteins were added on SDS-PAGE and electrophoresis was performed, followed by transfer to PVDF membrane. The membrane was blocked with 5% BSA for 2 h at room temperature and the exosome-loaded membranes were incubated overnight at 4 °C with rabbit monoclonal antibodies CD9 (1:1000; ab236630), TSG101 (1:3000; ab125011) and ALIX (1:1000; ab275377). The hPDLSCs samples were incubated overnight with rabbit polyclonal antibodies to ALP (1:1000; ab229126) and OCN (1:2000; ab93876). The membrane was washed 3 times with PBST and incubated with Goat Anti-Rabbit IgG H&L (HRP) (1:5000; abcam; ab205718) for 1 h at 37 °C. β-actin was used as an internal reference. The ECL kit (Beyotime) was used for development and the bands on the membrane were scanned and imaged by E-Gel Imager gel imaging system (Thermo Fisher Scientific). All the above antibodies were purchased from Abcam plc (Cambridge, MA, USA). The results were quantified using Image J software. RNA extraction and RT-PCR assay Total RNA in hPDLSCs was extracted using Trizol reagent (Thermo Fisher Scientific). Extraction of miRNA from exosomes by Qiagen miRNeasy Mini Kit (QIAGEN, Duesseldorf, Germany). Total RNA was reverse-transcribed to cDNA according to the instructions of SuperScript First-Strand Synthesis System (Thermo Fisher Scientific), and RT-qPCR was performed by SYBR GreenMaster Mix (Thermo Fisher Scientific) to detect the expression of mRNA and miRNA. The primers for mRNA and miRNA are shown in Table [63]1. β-actin and U6 were used as internal references for