Abstract The rapid dissemination of antibiotic resistance accelerates the desire for new antibacterial agents. Here, a class of antimicrobial peptides (AMPs) is designed by modifying the structural parameters of a natural chickpea‐derived AMP–Leg2, termed “functionalized chickpea‐derived Leg2 antimicrobial peptides” (FCLAPs). Among the FCLAPs, KTA and KTR show superior antibacterial efficacy against the foodborne pathogen Escherichia coli (E. coli) O157:H7 (with MICs in the range of 2.5–4.7 µmol L^−1) and demonstrate satisfactory feasibility in alleviating E. coli O157:H7‐induced intestinal infection. Additionally, the low cytotoxicity along with insusceptibility to antimicrobial resistance increases the potential of FCLAPs as appealing antimicrobials. Combining the multi‐omics profiling andpeptide‐membrane interaction assays, a unique dual‐targeting mode of action is characterized. To specify the antibacterial mechanism, microscopical observations, membrane‐related physicochemical properties studies, and mass spectrometry assays are further performed. Data indicate that KTA and KTR induce membrane damage by initially targeting the lipopolysaccharide (LPS), thus promoting the peptides to traverse the outer membrane. Subsequently, the peptides intercalate into the peptidoglycan (PGN) layer, blocking its synthesis, and causing a collapse of membrane structure. These findings altogether imply the great potential of KTA and KTR as promising antibacterial candidates in combating the growing threat of E. coli O157:H7. Keywords: antimicrobial peptides, dual‐targeting mechanism of action, Escherichia coli O157:H7, foodborne pathogen intervention, membrane‐mediated antimicrobial mechanism __________________________________________________________________ Functionalized chickpea‐derived Leg2 antimicrobial peptides (FCLAPs) show superior antibacterial activity, and they combat Escherichia coli O157:H7 through a dual‐targeting mechanism. First, FCLAPs induce membrane damage by initially targeting the lipopolysaccharide, thus promoting the peptides to traverse the outer membrane. Subsequently, the peptides intercalate into the peptidoglycan layer, blocking its synthesis, and causing a collapse of membrane structure. graphic file with name ADVS-10-2205301-g010.jpg 1. Introduction The ever‐growing prevalence of foodborne infections caused by Gram‐negative microbes, especially E. coli O157:H7, Salmonella, and Pseudomonas aeruginosa, has been recognized as a critical healthcare issue that necessitates the development of new antimicrobial agents.^[ [44]^1 ^] However, the pipeline for the discovery of novel antimicrobials that target Gram‐negative bacteria remains empty.^[ [45]^2 ^] This problem is partly attributed to their intrinsic resistance to most antibiotics that are currently available in clinical applications.^[ [46]^3 ^] Another reason is that Gram‐negative bacteria evolved a unique outer membrane (OM) that serves as a highly impermeable barrier to protect themselves from harmful compounds.^[ [47]^4 ^] Although recent efforts have been devoted to antimicrobial development, most of the new compounds functioned similarly in their mechanisms to those of traditional antibiotics.^[ [48]^5 ^] These worrisome limitations portend the introduction of drugs to clinical applications might be a long and arduous process. Under these circumstances, developing ideal promising antibiotic alternatives that selectively kill Gram‐negative bacteria is imperative to address the urgent medical need. Antimicrobial peptides (AMPs) have received extensive attention during the past three decades as a new generation of antibiotics.^[ [49]^6 ^] Different from most conventional antibiotics that act on specific intracellular targets, AMPs combat bacteria primarily through electrostatic interactions and physically destroying the microbial lipid bilayers.^[ [50]^7 ^] The nature of the membrane‐active mechanism renders bacteria with minimal probability to evolve resistance to AMPs, primarily due to the need for a range of genetic mutations to alter the whole components of the bacterial cell membrane.^[ [51]^8 ^] At present, more than 3000 AMPs have been documented in the antimicrobial peptide database, however, only seven of them have been approved by the U.S. Food and Drug Administration for clinical application.^[ [52]^9 ^] The reduced efficacy in clinically relevant environments, high toxicity toward mammalian cells, and proteolytic instability of natural AMPs were the major challenges that slowed down their clinical implementation.^[ [53]^10 ^] and application in the food industry.^[ [54]^11 ^] Therefore, new potent AMPs with improved in vivo antimicrobial performance and reduced cytotoxicity are stringently needed to overcome the limitations of natural AMPs.^[ [55]^12 ^] In this regard, researchers have been focused on modifying the AMPs isolated from natural sources for stronger properties.^[ [56]^13 ^] Great efforts have been made to explore the relationships between the physicochemical parameters of AMPs (i.e., net charge, hydrophobicity, amphiphilicity, and structural propensity) and the antibacterial efficacy which provide references for rational modification and