Based on the provided abstract and sections from the scientific article, here's an examination of how pathway enrichment analysis was conducted: 1. **Tool Used for Pathway Enrichment Analysis:** - The tool used is not explicitly mentioned in the provided text. 2. **Tool Version Number Provided:** - Not described 3. **Gene Set Library Queried (e.g., GO, KEGG, Reactome or other):** - The gene set library queried includes KEGG, as indicated by references to the "AMPH addiction pathway." 4. **Background Gene List Defined for Pathway Enrichment Analysis:** - Not described 5. **Statistical Test Used for Enrichment Analysis:** - The specific statistical test used is not detailed in the provided text. 6. **False Discovery Rate Correction Used to Control Number of False Positives:** - It is mentioned that a "false discovery rate (FDR) correction" was used, indicating control over false positives. Here's the collated information: | Question | Answer | |--------------------------------------------------------------------------|----------------| | What tool was used for pathway enrichment analysis? | Not described | | Was a tool version number provided? | Not described | | What gene set library was queried (e.g., GO, KEGG, Reactome or other)? | KEGG | | Was a background gene list defined for pathway enrichment analysis? | Not described | | What statistical test was used for enrichment analysis? | Not described | | Was false discovery rate correction used to control the number of false positives in the pathway enrichment analysis? | Yes (FDR correction) | If you need further details, reviewing the full Methods section or related supplementary materials in the article would be necessary.