Here is an examination of how the pathway enrichment analysis was conducted based on the provided article: 1. **Tool Used for Pathway Enrichment Analysis:** - The tool used for pathway enrichment analysis is not explicitly described in the Methods section. 2. **Tool Version Number Provided:** - No version number for the tool is provided in the article. 3. **Gene Set Library Queried:** - Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) were used for pathway enrichment analysis, as mentioned in other sections of the article. 4. **Background Gene List Defined:** - The background gene list is not explicitly defined in the Methods section. Typically, it would be all genes detected or annotated within the experimental context. 5. **Statistical Test Used for Enrichment Analysis:** - The specific statistical test used for enrichment analysis is not described in the article. 6. **False Discovery Rate Correction Used:** - It is mentioned that the results were filtered by a false discovery rate (FDR) ≤ 0.05, indicating that FDR correction was applied to control the number of false positives in the pathway enrichment analysis. Here is the collated information in table format: | Question | Answer | |----------|--------| | Tool used for pathway enrichment analysis | Not described | | Tool version number provided | Not described | | Gene set library queried | GO, KEGG | | Background gene list defined | Not described | | Statistical test used for enrichment analysis | Not described | | False discovery rate correction used | Yes (FDR ≤ 0.05) |