Here's a breakdown of the pathway enrichment analysis methods used in the provided text, formatted for a table as requested: | Question | Answer | |---------------------------------------------|-------------------------------------------------------------------------------------------------------| | 1. What tool was used for pathway enrichment analysis? | Mummichog | | 2. Was a tool version number provided? | Not described | | 3. What gene set library was queried? | KEGG (as indicated by "Matched Compound (KEGG by mummichog)") | | 4. Was a background gene list defined? | Not described. The article doesn't detail if a specific background list was used for the analysis. | | 5. What statistical test was used? | Not described. The article doesn't mention the statistical test employed by Mummichog for enrichment. | | 6. Was false discovery rate correction used?| Yes, false discovery rate correction was used. The authors explicitly state, "False discovery rate correction was used to control the number of false positives in the pathway enrichment analysis."| **Important Notes:** * The information is directly extracted from the provided text. If a detail isn't mentioned, it's marked as "Not described". * The level of detail regarding the statistical methods is limited, as the article primarily focuses on the results rather than a detailed methodological description.