date generated: 2026-06-22
Mitch performs unidimensional and multidimensional gene set enrichment analysis. The concept behind this dates to work by Cox and Mann (https://doi.org/10.1186/1471-2105-13-S16-S12). This implementation is suited to R based workflows of multi-omics datasets. This software was developed by Antony Kaspi and Mark Ziemann. Learn more about Mitch at the website: https://github.com/markziemann/Mitch
Here is the first few lines of the input profile.
| crp_eos_adj | dex_eos_adj | |
|---|---|---|
| 5_8S_rRNA | -2.4785778 | 2.3372330 |
| A1BG | -1.7542512 | -0.1044447 |
| A1BG-AS1 | -1.0734376 | 0.3112347 |
| A1CF | 0.5521423 | 0.9717804 |
| A2M | 1.6603822 | 2.6139639 |
| A2M-AS1 | 1.3818491 | 2.4240591 |
Here are some metrics about the input data profile:
| Profile metrics | |
|---|---|
| num_genes_in_profile | 21999 |
| duplicated_genes_present | 0 |
| num_profile_genes_in_sets | 8829 |
| num_profile_genes_not_in_sets | 13170 |
| profile_pearson_correl | -0.39489 |
| profile_spearman_correl | -0.34705 |
Here is a plot of the input profiles. Note the dynamic ranges.