date generated: 2026-06-22
Mitch performs unidimensional and multidimensional gene set enrichment analysis. The concept behind this dates to work by Cox and Mann (https://doi.org/10.1186/1471-2105-13-S16-S12). This implementation is suited to R based workflows of multi-omics datasets. This software was developed by Antony Kaspi and Mark Ziemann. Learn more about Mitch at the website: https://github.com/markziemann/Mitch
Here is the first few lines of the input profile.
| crp_pod1_adj | dex_pod1_adj | |
|---|---|---|
| 5_8S_rRNA | 0.1666742 | -1.6789077 |
| A1BG | -1.0533790 | 0.4773455 |
| A1BG-AS1 | -0.2260155 | -0.3881907 |
| A1CF | 1.1773563 | 0.3059609 |
| A2M | 1.7932114 | -0.6340972 |
| A2M-AS1 | 0.7455571 | 1.0223691 |
Here are some metrics about the input data profile:
| Profile metrics | |
|---|---|
| num_genes_in_profile | 21253 |
| duplicated_genes_present | 0 |
| num_profile_genes_in_sets | 8700 |
| num_profile_genes_not_in_sets | 12553 |
| profile_pearson_correl | -0.55009 |
| profile_spearman_correl | -0.51476 |
Here is a plot of the input profiles. Note the dynamic ranges.