FastQCFastQC Report
Fri 12 Aug 2022
C3_L1_2.fq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameC3_L1_2.fq.gz
File typeConventional base calls
EncodingIllumina 1.5
Total Sequences12450915
Sequences flagged as poor quality0
Sequence length90
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGTTCGATTCCTTCCTTTCTTATTTTACTTTTACATAGGTTGGTTCC190500.15300080355540135No Hit
GGTGTAAGCATCTGGGTAGTCTGAGTAGCGTCGTGGTATTCCTGAAAGGC141510.1136542976961934No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)