date generated: 2021-08-12

Background

Mitch performs unidimensional and multidimensional gene set enrichment analysis. The concept behind this dates to work by Cox and Mann (https://doi.org/10.1186/1471-2105-13-S16-S12). This implementation is suited to R based workflows of multi-omics datasets. This software was developed by Antony Kaspi and Mark Ziemann. Learn more about Mitch at the website: https://github.com/markziemann/Mitch

Input profiles

Here is the first few lines of the input profile.

##                x
## 10724  -8.866879
## 60487   7.916412
## 60924  -7.765310
## 134676 -7.409794
## 38006  -5.055191
## 549     4.162656

Here are some metrics about the input data profile:

Profile metrics
Profile metrics
num_genesets 273
num_genes_in_profile 8225
duplicated_genes_present 0
num_profile_genes_in_sets 6864
num_profile_genes_not_in_sets 1361

Here is a plot of the input profiles. Note the dynamic ranges.

Here is the contour plot of the profile including all detected genes.

Input genesets

Here are some metrics about the gene sets used: GMT file of genesets:

Gene sets metrics
Gene sets metrics
num_genesets 273
num_genesets_excluded 113
num_genesets_included 160

Differential pathway expression


Interactive enrichment scatterplot

Significance is calculated by -log10(p-value). All points shown are FDR<0.05.

Significance is calculated by -log10(p-value). Top N sets shown irrespective of FDR.

Results table

Top N= 50 gene sets

set setSize pANOVA s.dist p.adjustANOVA
f Pseudomonadaceae 276 2.97e-40 0.467 4.75e-38
f Moraxellaceae 85 6.87e-21 -0.589 5.50e-19
f Comamonadaceae 80 4.92e-19 -0.577 2.62e-17
f Paenibacillaceae 105 1.17e-17 -0.484 4.69e-16
f Aeromonadaceae 66 5.08e-15 -0.557 1.63e-13
f Nocardioidaceae 34 7.11e-08 0.534 1.90e-06
f Enterobacteriaceae 243 1.39e-06 0.181 3.17e-05
f Erwiniaceae 41 2.70e-06 0.424 5.40e-05
f Streptomycetaceae 293 2.14e-05 0.146 3.60e-04
f Listeriaceae 21 2.25e-05 0.534 3.60e-04
f Oxalobacteraceae 61 7.55e-05 0.294 1.10e-03
f Chromobacteriaceae 21 1.31e-04 0.482 1.75e-03
f Morganellaceae 31 1.45e-04 -0.395 1.78e-03
f Herelleviridae 63 5.90e-04 0.251 6.74e-03
f Trypanosomatidae 18 1.67e-03 0.428 1.78e-02
f Myoviridae 75 3.12e-03 0.198 3.07e-02
f Thermoguttaceae 53 3.26e-03 -0.234 3.07e-02
f Microbacteriaceae 102 4.16e-03 -0.165 3.45e-02
f Alcaligenaceae 45 4.20e-03 -0.247 3.45e-02
f Mimiviridae 21 4.32e-03 -0.360 3.45e-02
f Burkholderiaceae 133 4.79e-03 0.142 3.56e-02
f Micromonosporaceae 45 4.90e-03 -0.243 3.56e-02
f Carnobacteriaceae 11 6.06e-03 0.478 4.18e-02
f Nocardiaceae 52 6.27e-03 -0.220 4.18e-02
f Caulobacteraceae 30 7.16e-03 0.284 4.58e-02
f Bradyrhizobiaceae 55 8.75e-03 0.205 5.39e-02
f Plasmodiidae 22 1.11e-02 -0.313 6.55e-02
f Helicobacteraceae 27 1.65e-02 -0.267 9.43e-02
f Rhizobiaceae 60 1.73e-02 0.178 9.55e-02
f Peptostreptococcaceae 14 1.92e-02 -0.362 1.02e-01
f Neisseriaceae 30 2.01e-02 0.245 1.04e-01
f Sphingomonadaceae 94 2.68e-02 0.133 1.30e-01
f Pseudonocardiaceae 51 2.68e-02 -0.180 1.30e-01
f Xanthomonadaceae 62 2.98e-02 -0.160 1.40e-01
f Hafniaceae 13 3.43e-02 0.339 1.57e-01
f Nectriaceae 13 3.62e-02 -0.336 1.61e-01
f Phyllobacteriaceae 40 5.89e-02 -0.173 2.55e-01
f Propionibacteriaceae 23 6.62e-02 0.221 2.74e-01
f Acetobacteraceae 42 6.69e-02 -0.164 2.74e-01
f Podoviridae 37 6.99e-02 -0.172 2.79e-01
f Rhodanobacteraceae 12 9.87e-02 0.275 3.84e-01
f Gallionellaceae 10 1.01e-01 0.300 3.84e-01
f Clostridiaceae 77 1.27e-01 0.101 4.58e-01
f Aspergillaceae 45 1.29e-01 0.131 4.58e-01
f Piscirickettsiaceae 11 1.29e-01 0.265 4.58e-01
f Solanaceae 11 1.35e-01 -0.261 4.64e-01
f Staphylococcaceae 48 1.36e-01 0.124 4.64e-01
f Chitinophagaceae 21 1.41e-01 0.186 4.69e-01
f Halomonadaceae 49 1.46e-01 0.120 4.77e-01
f Blattabacteriaceae 10 1.52e-01 0.262 4.85e-01


Results (complete table)


Click HERE to show results for all gene sets

Complete results
set setSize pANOVA s.dist p.adjustANOVA
f Pseudomonadaceae 276 2.97e-40 0.467000 4.75e-38
f Moraxellaceae 85 6.87e-21 -0.589000 5.50e-19
f Comamonadaceae 80 4.92e-19 -0.577000 2.62e-17
f Paenibacillaceae 105 1.17e-17 -0.484000 4.69e-16
f Aeromonadaceae 66 5.08e-15 -0.557000 1.63e-13
f Nocardioidaceae 34 7.11e-08 0.534000 1.90e-06
f Enterobacteriaceae 243 1.39e-06 0.181000 3.17e-05
f Erwiniaceae 41 2.70e-06 0.424000 5.40e-05
f Streptomycetaceae 293 2.14e-05 0.146000 3.60e-04
f Listeriaceae 21 2.25e-05 0.534000 3.60e-04
f Oxalobacteraceae 61 7.55e-05 0.294000 1.10e-03
f Chromobacteriaceae 21 1.31e-04 0.482000 1.75e-03
f Morganellaceae 31 1.45e-04 -0.395000 1.78e-03
f Herelleviridae 63 5.90e-04 0.251000 6.74e-03
f Trypanosomatidae 18 1.67e-03 0.428000 1.78e-02
f Myoviridae 75 3.12e-03 0.198000 3.07e-02
f Thermoguttaceae 53 3.26e-03 -0.234000 3.07e-02
f Microbacteriaceae 102 4.16e-03 -0.165000 3.45e-02
f Alcaligenaceae 45 4.20e-03 -0.247000 3.45e-02
f Mimiviridae 21 4.32e-03 -0.360000 3.45e-02
f Burkholderiaceae 133 4.79e-03 0.142000 3.56e-02
f Micromonosporaceae 45 4.90e-03 -0.243000 3.56e-02
f Carnobacteriaceae 11 6.06e-03 0.478000 4.18e-02
f Nocardiaceae 52 6.27e-03 -0.220000 4.18e-02
f Caulobacteraceae 30 7.16e-03 0.284000 4.58e-02
f Bradyrhizobiaceae 55 8.75e-03 0.205000 5.39e-02
f Plasmodiidae 22 1.11e-02 -0.313000 6.55e-02
f Helicobacteraceae 27 1.65e-02 -0.267000 9.43e-02
f Rhizobiaceae 60 1.73e-02 0.178000 9.55e-02
f Peptostreptococcaceae 14 1.92e-02 -0.362000 1.02e-01
f Neisseriaceae 30 2.01e-02 0.245000 1.04e-01
f Sphingomonadaceae 94 2.68e-02 0.133000 1.30e-01
f Pseudonocardiaceae 51 2.68e-02 -0.180000 1.30e-01
f Xanthomonadaceae 62 2.98e-02 -0.160000 1.40e-01
f Hafniaceae 13 3.43e-02 0.339000 1.57e-01
f Nectriaceae 13 3.62e-02 -0.336000 1.61e-01
f Phyllobacteriaceae 40 5.89e-02 -0.173000 2.55e-01
f Propionibacteriaceae 23 6.62e-02 0.221000 2.74e-01
f Acetobacteraceae 42 6.69e-02 -0.164000 2.74e-01
f Podoviridae 37 6.99e-02 -0.172000 2.79e-01
f Rhodanobacteraceae 12 9.87e-02 0.275000 3.84e-01
f Gallionellaceae 10 1.01e-01 0.300000 3.84e-01
f Clostridiaceae 77 1.27e-01 0.101000 4.58e-01
f Aspergillaceae 45 1.29e-01 0.131000 4.58e-01
f Piscirickettsiaceae 11 1.29e-01 0.265000 4.58e-01
f Solanaceae 11 1.35e-01 -0.261000 4.64e-01
f Staphylococcaceae 48 1.36e-01 0.124000 4.64e-01
f Chitinophagaceae 21 1.41e-01 0.186000 4.69e-01
f Halomonadaceae 49 1.46e-01 0.120000 4.77e-01
f Blattabacteriaceae 10 1.52e-01 0.262000 4.85e-01
f Lactobacillaceae 95 1.63e-01 0.083200 5.10e-01
f Debaryomycetaceae 18 1.75e-01 -0.185000 5.20e-01
f Poaceae 30 1.76e-01 -0.143000 5.20e-01
f Rhodospirillaceae 34 1.77e-01 -0.134000 5.20e-01
f Natrialbaceae 19 1.81e-01 -0.178000 5.20e-01
f Gordoniaceae 13 1.83e-01 0.214000 5.20e-01
f Thermoanaerobacterales Family III. Incertae Sedis 13 1.85e-01 -0.212000 5.20e-01
f Poxviridae 11 1.94e-01 -0.226000 5.35e-01
f Pectobacteriaceae 30 1.99e-01 0.136000 5.41e-01
f Bacteroidaceae 17 2.05e-01 0.178000 5.45e-01
f Cellulomonadaceae 13 2.08e-01 0.202000 5.46e-01
f Anaplasmataceae 11 2.17e-01 0.215000 5.55e-01
f Saccharomycetaceae 26 2.19e-01 0.139000 5.55e-01
f Drosophilidae 32 2.22e-01 -0.125000 5.55e-01
f Bacillaceae 231 2.45e-01 -0.044800 5.75e-01
f Shewanellaceae 40 2.49e-01 -0.106000 5.75e-01
f Halorubraceae 10 2.52e-01 0.209000 5.75e-01
f Aurantimonadaceae 12 2.52e-01 -0.191000 5.75e-01
f Erythrobacteraceae 30 2.53e-01 0.121000 5.75e-01
f Leuconostocaceae 21 2.54e-01 -0.144000 5.75e-01
f Sphingobacteriaceae 36 2.55e-01 -0.110000 5.75e-01
f Micrococcaceae 74 2.68e-01 -0.074700 5.92e-01
f Chromatiaceae 16 2.70e-01 0.159000 5.92e-01
f Geobacteraceae 14 2.75e-01 -0.169000 5.94e-01
f Peptococcaceae 22 2.82e-01 -0.133000 6.01e-01
f Pleosporaceae 10 2.90e-01 -0.193000 6.01e-01
f Francisellaceae 12 2.92e-01 0.176000 6.01e-01
f Streptococcaceae 69 2.93e-01 0.073400 6.01e-01
f Mycobacteriaceae 71 2.98e-01 -0.071600 6.04e-01
f Siphoviridae 82 3.38e-01 0.061400 6.77e-01
f Spirochaetaceae 19 3.69e-01 -0.119000 7.23e-01
f Enterococcaceae 27 3.71e-01 -0.099600 7.23e-01
f Hyphomicrobiaceae 17 3.87e-01 -0.121000 7.36e-01
f Actinomycetaceae 37 3.91e-01 -0.081700 7.36e-01
f Thermaceae 12 3.91e-01 -0.143000 7.36e-01
f Formicidae 23 3.97e-01 -0.102000 7.39e-01
f Fabaceae 24 4.19e-01 -0.095300 7.67e-01
f Intrasporangiaceae 16 4.22e-01 -0.116000 7.67e-01
f Planctomycetaceae 12 4.46e-01 -0.127000 8.02e-01
f Borreliaceae 18 4.59e-01 0.101000 8.02e-01
f Zoogloeaceae 16 4.65e-01 0.106000 8.02e-01
f Cystoviridae 24 4.68e-01 0.085700 8.02e-01
f Yersiniaceae 52 4.69e-01 0.058100 8.02e-01
f Methylobacteriaceae 27 4.71e-01 0.080200 8.02e-01
f Methanosarcinaceae 19 4.81e-01 0.093600 8.05e-01
f Mycoplasmataceae 71 4.85e-01 -0.048000 8.05e-01
f Vibrionaceae 64 4.88e-01 -0.050200 8.05e-01
f Pseudoalteromonadaceae 30 5.12e-01 -0.069300 8.31e-01
f Nitrosopumilaceae 12 5.14e-01 0.109000 8.31e-01
f Fusobacteriaceae 12 5.24e-01 -0.106000 8.31e-01
f Brucellaceae 12 5.24e-01 0.106000 8.31e-01
f Leptotrichiaceae 13 5.41e-01 0.098100 8.48e-01
f Halobacteriaceae 13 5.51e-01 -0.095500 8.56e-01
f Dermabacteraceae 11 5.71e-01 0.098800 8.70e-01
f Desulfovibrionaceae 22 5.76e-01 -0.069000 8.70e-01
f Erysipelotrichaceae 11 5.76e-01 -0.097300 8.70e-01
f Bartonellaceae 19 5.86e-01 0.072200 8.77e-01
f Thermococcaceae 24 5.94e-01 -0.062900 8.78e-01
f Brassicaceae 16 5.98e-01 -0.076200 8.78e-01
f Peptoniphilaceae 10 6.04e-01 0.094800 8.79e-01
f Rhodobacteraceae 115 6.15e-01 -0.027300 8.85e-01
f Eubacteriaceae 12 6.32e-01 -0.080000 8.85e-01
f Oceanospirillaceae 11 6.32e-01 0.083500 8.85e-01
f Alteromonadaceae 46 6.34e-01 -0.040700 8.85e-01
f Cyclobacteriaceae 10 6.40e-01 0.085500 8.85e-01
f Nostocaceae 25 6.46e-01 0.053100 8.85e-01
f Acholeplasmataceae 13 6.47e-01 0.073300 8.85e-01
f Synechococcaceae 34 6.72e-01 0.042100 9.06e-01
f Haloferacaceae 11 6.85e-01 -0.070600 9.06e-01
f Lachnospiraceae 41 6.89e-01 -0.036200 9.06e-01
f Herpotrichiellaceae 21 6.90e-01 -0.050400 9.06e-01
f Deinococcaceae 19 6.96e-01 0.051900 9.06e-01
f Streptosporangiaceae 11 6.96e-01 -0.068000 9.06e-01
f Nitrososphaeraceae 11 7.14e-01 -0.063900 9.21e-01
f Sulfolobaceae 15 7.19e-01 -0.053700 9.21e-01
f Ustilaginaceae 11 7.30e-01 -0.060200 9.21e-01
f Cyprinidae 11 7.40e-01 -0.057800 9.21e-01
f Rickettsiaceae 16 7.43e-01 -0.047400 9.21e-01
f Nitrosomonadaceae 10 7.47e-01 -0.058900 9.21e-01
f Ruminococcaceae 13 7.51e-01 0.050800 9.21e-01
f Corynebacteriaceae 73 7.54e-01 -0.021200 9.21e-01
f Frankiaceae 11 7.64e-01 0.052400 9.25e-01
f Cercopithecidae 14 7.94e-01 0.040300 9.49e-01
f Haloarculaceae 14 7.95e-01 -0.040100 9.49e-01
f Colwelliaceae 12 8.14e-01 -0.039300 9.61e-01
f Desulfobacteraceae 11 8.32e-01 0.036900 9.61e-01
f Flavobacteriaceae 205 8.34e-01 -0.008580 9.61e-01
f Prevotellaceae 13 8.35e-01 0.033300 9.61e-01
f Methanobacteriaceae 18 8.45e-01 -0.026600 9.61e-01
f Pasteurellaceae 37 8.50e-01 -0.018000 9.61e-01
f Thermoanaerobacteraceae 17 8.51e-01 -0.026400 9.61e-01
f Synergistaceae 10 8.53e-01 -0.033800 9.61e-01
f Eggerthellaceae 11 8.65e-01 0.029600 9.68e-01
f Methylocystaceae 17 8.92e-01 -0.019000 9.71e-01
f Ectothiorhodospiraceae 17 8.98e-01 -0.017900 9.71e-01
f Planococcaceae 42 8.99e-01 -0.011300 9.71e-01
f Methylococcaceae 34 9.00e-01 0.012500 9.71e-01
f Entomoplasmataceae 10 9.05e-01 0.021800 9.71e-01
f Cryptococcaceae 10 9.10e-01 -0.020600 9.71e-01
f Methylophilaceae 22 9.10e-01 0.013900 9.71e-01
f Cytophagaceae 20 9.21e-01 0.012800 9.76e-01
f Spiroplasmataceae 24 9.32e-01 -0.010000 9.76e-01
f Legionellaceae 20 9.45e-01 -0.008960 9.76e-01
f Apidae 10 9.55e-01 -0.010300 9.76e-01
f Bifidobacteriaceae 20 9.57e-01 0.006930 9.76e-01
f Thermoproteaceae 11 9.59e-01 0.008880 9.76e-01
f Hymenobacteraceae 23 9.63e-01 -0.005610 9.76e-01
f Chlorobiaceae 14 9.64e-01 -0.006940 9.76e-01
f 216 9.71e-01 0.001450 9.77e-01
f Campylobacteraceae 58 9.95e-01 0.000519 9.95e-01


Detailed Gene set reports



f__Pseudomonadaceae

f__Pseudomonadaceae
1
set f__Pseudomonadaceae
setSize 276
pANOVA 2.97e-40
s.dist 0.467
p.adjustANOVA 4.75e-38



Top enriched genes

Top 20 genes
GeneID Gene Rank
251076 4175
1628086 4042
329930 3999
65741 3996
2559074 3950
2079806 3942
251083 3929
198620 3890
1849986 3844
251069 3836
159091 3824
1170392 3807
1421430 3794
930166 3767
1573712 3732
1785145 3729
1175925 3717
321662 3689
237609 3676
2073078 3667

Click HERE to show all gene set members

All member genes
GeneID Gene Rank
251076 4175
1628086 4042
329930 3999
65741 3996
2559074 3950
2079806 3942
251083 3929
198620 3890
1849986 3844
251069 3836
159091 3824
1170392 3807
1421430 3794
930166 3767
1573712 3732
1785145 3729
1175925 3717
321662 3689
237609 3676
2073078 3667
547985 3657
2213017 3651
1573720 3613
2067572 3540
251055 3521
1288410 3507
198616 3500
658630 3453
150396 3452
1500687 3443
1611770 3434
1173280 3431
70775 3428
1573704 3403
1534110 3387
1881017 3360
1855380 3341
658643 3328
298 3327
50340 3321
1931241 3320
380021 3316
706570 3312
587753 3305
397421 3299
1702250 3292
2518644 3289
198931 3280
2320270 3250
47879 3247
658629 3239
341029 3235
2045200 3229
321661 3204
43306 3194
2487887 3190
33069 3176
294 3174
2005388 3153
2049589 3138
1173283 3135
658644 3126
2653853 3101
47878 3083
183795 3079
2587845 3053
1500686 3049
487184 3046
46680 3044
1190415 3036
1294143 3034
686578 3030
53408 3025
53407 3019
359110 3015
2219057 2999
2213057 2991
1194712 2975
515393 2969
1573719 2966
928979 2959
91465 2955
2609418 2946
1827300 2936
29442 2935
317 2922
86185 2912
2054915 2907
118613 2894
200450 2857
1788301 2833
545908 2808
165468 2804
36746 2778
143813 2773
76758 2767
472181 2765
46677 2758
1028989 2752
287 2718
1495331 2711
296 2708
470150 2695
2126069 2680
2169583 2679
2018067 2672
1755504 2666
219572 2656
47884 2641
1898684 2628
2664899 2625
1615674 2622
74829 2611
253237 2609
2213226 2605
2054919 2601
1811592 2599
1245526 2597
1434072 2587
2320867 2582
437900 2575
2505979 2574
251701 2557
651740 2554
1849995 2532
1173273 2527
1499686 2524
244566 2517
46679 2496
2590776 2487
1392877 2480
157783 2467
191390 2464
47883 2458
237610 2453
122355 2447
244327 2441
2604941 2435
2083054 2412
76760 2404
1855331 2395
69328 2382
2083055 2381
306 2373
1930532 2372
129817 2366
1978467 2361
1856588 2352
216142 2344
1274359 2340
75612 2327
1415630 2297
2054914 2291
95301 2279
101564 2277
797277 2267
1173288 2258
1849990 2243
1491394 2231
47885 2228
2083051 2216
1573711 2212
1981174 2208
553151 2204
1148509 2184
89065 2161
157782 2157
2479392 2149
633276 2143
1354732 2141
76761 2101
271420 2087
1461581 2085
2654238 2064
2025658 1996
1886807 1994
2498848 1971
291995 1969
47877 1943
86265 1914
354 1885
1736226 1870
1206777 1825
53409 1824
1173270 1812
364197 1806
676210 1799
1259844 1794
1007495 1762
1302376 1756
104087 1741
200451 1736
353 1722
658632 1705
75588 1704
1583341 1689
658642 1640
300 1585
1365591 1547
2201356 1539
658641 1531
2605424 1479
2597770 1463
702115 1433
163011 1327
114707 1317
1856685 1300
1659194 1298
2052956 1293
341693 1289
349846 1280
301 1264
1853130 1249
29438 1211
500335 1190
947933 1167
2217867 1140
1677868 1128
198618 1127
303 1106
47880 1012
2083053 987
95300 981
281994 861
1283291 843
1173284 771
316 727
1649877 709
1149133 705
395598 691
1510150 406
69964 358
168469 350
1849997 287
2587597 272
312306 236
2604832 97
76759 5
251060 -44
2479393 -73
321846 -128
115714 -155
78327 -401
220135 -561
110517 -579
2083052 -780
47882 -804
2069256 -822
1849988 -827
1849983 -848
77206 -867
657346 -907
1573718 -913
1207075 -980
43263 -1044
76885 -1133
1449786 -1335
137658 -1338
319939 -1469
1849994 -1522
1850007 -1645
169669 -1652
1761895 -1665
47886 -1879
2213015 -1894
1084570 -2055
1636610 -2092
211594 -2162
46257 -2219
1338689 -2272
1880702 -2607
1306993 -2803
53412 -3027
1697053 -3237
177980 -3479
525486 -3514


f__Moraxellaceae

f__Moraxellaceae
2
set f__Moraxellaceae
setSize 85
pANOVA 6.87e-21
s.dist -0.589
p.adjustANOVA 5.5e-19



Top enriched genes

Top 20 genes
GeneID Gene Rank
168931 -4020
1636603 -3991
2662362 -3982
40214 -3973
52133 -3959
40215 -3951
70348 -3947
334543 -3942
2004646 -3940
2609668 -3932
1789224 -3928
29430 -3921
202950 -3895
202956 -3887
2004644 -3882
1608473 -3875
1871111 -3865
1646498 -3836
202955 -3828
2004650 -3823

Click HERE to show all gene set members

All member genes
GeneID Gene Rank
168931 -4020
1636603 -3991
2662362 -3982
40214 -3973
52133 -3959
40215 -3951
70348 -3947
334543 -3942
2004646 -3940
2609668 -3932
1789224 -3928
29430 -3921
202950 -3895
202956 -3887
2004644 -3882
1608473 -3875
1871111 -3865
1646498 -3836
202955 -3828
2004650 -3823
134534 -3821
123502 -3818
70347 -3770
1879050 -3752
72607 -3724
2136182 -3681
1407071 -3663
40216 -3653
28090 -3628
1217701 -3627
386891 -3566
106649 -3550
1879049 -3525
108981 -3508
108980 -3505
2079596 -3490
202952 -3484
1808001 -3477
480 -3448
487316 -3367
106646 -3362
756892 -3322
106648 -3256
1699622 -3245
45610 -3196
710648 -2991
470 -2932
2004647 -2923
262668 -2781
165433 -2770
202951 -2737
571800 -2707
1324350 -2666
472 -2645
396323 -2542
330922 -2527
56811 -2344
202954 -2282
1096779 -2230
1385437 -2128
2517899 -2094
1758189 -2081
280145 -2013
1785128 -2002
1179080 -1919
471 -1918
34061 -1556
654882 -1376
1551639 -703
1809055 -589
1148157 -477
1699623 -441
48296 -208
106654 29
1028416 805
476 927
1699621 1701
2283318 1785
34062 1849
1619187 2131
1699624 2701
1811338 2981
2420300 3411
228654 4043
376935 4173


f__Comamonadaceae

f__Comamonadaceae
26
set f__Comamonadaceae
setSize 80
pANOVA 4.92e-19
s.dist -0.577
p.adjustANOVA 2.62e-17



Top enriched genes

Top 20 genes
GeneID Gene Rank
129134 -4010
225991 -4005
167061 -4002
2597701 -3993
213664 -3985
1317672 -3954
1082851 -3944
795665 -3939
225992 -3937
1546149 -3933
553814 -3862
232721 -3817
667019 -3797
81479 -3796
80866 -3787
165437 -3779
2109914 -3766
1842533 -3740
721785 -3733
364029 -3716

Click HERE to show all gene set members

All member genes
GeneID Gene Rank
129134 -4010
225991 -4005
167061 -4002
2597701 -3993
213664 -3985
1317672 -3954
1082851 -3944
795665 -3939
225992 -3937
1546149 -3933
553814 -3862
232721 -3817
667019 -3797
81479 -3796
80866 -3787
165437 -3779
2109914 -3766
1842533 -3740
721785 -3733
364029 -3716
364317 -3714
2478662 -3687
477209 -3679
363952 -3672
1858609 -3609
1844971 -3595
768543 -3571
1920191 -3548
358220 -3542
285 -3540
1232667 -3529
477210 -3512
1458426 -3504
179636 -3502
477205 -3494
434010 -3412
80880 -3411
80867 -3405
2109915 -3301
755087 -3193
742013 -3181
2116657 -3177
1763535 -3176
80869 -3147
2565558 -3126
1458425 -3085
2109913 -2989
272829 -2976
1484693 -2953
1842537 -2900
32013 -2822
80868 -2813
1678128 -2682
2651974 -2678
296591 -2628
1678129 -1989
192843 -1771
180282 -1618
436515 -1574
2527691 -661
2126319 -520
2509614 -478
34028 -454
207745 -419
47421 -302
216465 27
434009 61
1658672 196
1795631 479
34073 573
434008 612
1842727 628
434014 778
1436290 942
662548 1489
282217 1804
1034889 2407
94132 2476
2184519 3989
173681 4014


f__Paenibacillaceae

f__Paenibacillaceae
60
set f__Paenibacillaceae
setSize 105
pANOVA 1.17e-17
s.dist -0.484
p.adjustANOVA 4.69e-16



Top enriched genes

Top 20 genes
GeneID Gene Rank
78057 -3988
1031539 -3965
401638 -3962
1463157 -3922
1178515 -3916
649508 -3759
365617 -3749
128574 -3732
1712516 -3721
49283 -3694
1695218 -3645
2495582 -3644
130049 -3639
377615 -3621
1844972 -3613
324057 -3608
1391 -3584
1406 -3546
2674991 -3534
2069255 -3468

Click HERE to show all gene set members

All member genes
GeneID Gene Rank
78057 -3988
1031539 -3965
401638 -3962
1463157 -3922
1178515 -3916
649508 -3759
365617 -3749
128574 -3732
1712516 -3721
49283 -3694
1695218 -3645
2495582 -3644
130049 -3639
377615 -3621
1844972 -3613
324057 -3608
1391 -3584
1406 -3546
2674991 -3534
2069255 -3468
2023772 -3456
44251 -3419
227322 -3409
59893 -3404
2583377 -3401
253703 -3360
2509456 -3307
1870819 -3299
189426 -3295
1536775 -3294
192895 -3270
61624 -3221
1882832 -3118
1566358 -3057
169760 -3044
2660554 -3022
1536770 -3006
162209 -2995
1464 -2984
79263 -2954
54913 -2940
2507935 -2916
1126833 -2880
2565926 -2872
1105155 -2863
160799 -2835
172713 -2810
1393 -2757
1120679 -2716
867076 -2709
683737 -2690
1778678 -2689
1811306 -2653
1532905 -2567
1616788 -2540
1465 -2421
1619311 -2408
414771 -2387
58172 -2386
51101 -2204
189425 -2115
44252 -2040
1763538 -2023
44250 -1990
1451 -1936
46240 -1839
198119 -1795
1536769 -1774
1536771 -1687
381423 -1651
483937 -1586
189691 -1584
1338368 -1525
327382 -1500
2487928 -1493
1536774 -1364
143495 -1134
1462996 -939
159743 -801
59843 -568
2496837 -367
1536773 -326
1324314 -119
1450761 -20
170367 43
1870820 63
1980674 91
2211212 377
1473112 387
248903 677
225917 779
562959 958
528191 977
1536772 1172
326139 1251
59842 1421
941858 1459
1500254 1466
2607911 1542
231952 1577
363858 1604
481743 1808
1401 1961
59840 2638
263817 3797


f__Aeromonadaceae

f__Aeromonadaceae
9
set f__Aeromonadaceae
setSize 66
pANOVA 5.08e-15
s.dist -0.557
p.adjustANOVA 1.63e-13



Top enriched genes

Top 20 genes
GeneID Gene Rank
1183657 -3975
70856 -3941
1903694 -3934
617155 -3914
263763 -3901
1917144 -3857
1636607 -3831
362920 -3790
633417 -3783
648 -3760
440079 -3757
600645 -3745
1758179 -3744
271417 -3743
646 -3683
1636608 -3674
931529 -3665
1733519 -3654
312718 -3647
647 -3616

Click HERE to show all gene set members

All member genes
GeneID Gene Rank
1183657 -3975
70856 -3941
1903694 -3934
617155 -3914
263763 -3901
1917144 -3857
1636607 -3831
362920 -3790
633417 -3783
648 -3760
440079 -3757
600645 -3745
1758179 -3744
271417 -3743
646 -3683
1636608 -3674
931529 -3665
1733519 -3654
312718 -3647
647 -3616
654 -3558
97346 -3533
197504 -3523
645 -3501
1920107 -3497
1055657 -3476
644 -3459
648794 -3445
2033033 -3440
196024 -3430
633415 -3387
652 -3385
1636606 -3380
651 -3370
324617 -3364
29489 -3312
218936 -3236
948519 -3229
73010 -3214
2033032 -3192
1636609 -3106
43948 -2962
1075205 -2754
649 -2753
1104769 -2743
511062 -2733
105751 -2520
1416627 -2502
1246275 -2340
558964 -2029
656 -1547
1814892 -1051
650 -1002
1006623 93
1055667 305
347534 649
1675689 1089
502790 1684
1437540 1925
1087881 2167
1917145 2299
591962 3189
1055625 3687
1055628 3763
310404 3857
582203 4088


f__Nocardioidaceae

f__Nocardioidaceae
91
set f__Nocardioidaceae
setSize 34
pANOVA 7.11e-08
s.dist 0.534
p.adjustANOVA 1.9e-06



Top enriched genes

Top 20 genes
GeneID Gene Rank
109465 4169
1841 4159
196162 3969
2483798 3939
110319 3910
2518370 3900
2575373 3790
2558918 3594
2662361 3586
2582905 3495
2045 3384
642780 3364
2518371 3319
450734 3203
2045452 3099
2500546 3090
402297 2986
449461 2957
304889 2940
2079793 2397

Click HERE to show all gene set members

All member genes
GeneID Gene Rank
109465 4169
1841 4159
196162 3969
2483798 3939
110319 3910
2518370 3900
2575373 3790
2558918 3594
2662361 3586
2582905 3495
2045 3384
642780 3364
2518371 3319
450734 3203
2045452 3099
2500546 3090
402297 2986
449461 2957
304889 2940
2079793 2397
2107713 2138
75385 2129
2589074 1899
117157 1768
2662028 1758
2041 1410
35761 1306
1804624 611
200618 249
1736691 58
546874 39
219314 -1095
182640 -2025
546871 -2384


f__Enterobacteriaceae

f__Enterobacteriaceae
3
set f__Enterobacteriaceae
setSize 243
pANOVA 1.39e-06
s.dist 0.181
p.adjustANOVA 3.17e-05



Top enriched genes

Top 20 genes
GeneID Gene Rank
60487 4191
203256 4190
60488 4184
566 4158
2596949 4155
1906275 4144
1497812 4143
435910 4132
255519 4129
73098 4124
2494701 4118
1920109 4113
1594731 4104
565 4102
2282310 4096
1920114 4094
2487150 4083
2282309 4078
51288 4056
2681309 4039

Click HERE to show all gene set members

All member genes
GeneID Gene Rank
60487 4191
203256 4190
60488 4184
566 4158
2596949 4155
1906275 4144
1497812 4143
435910 4132
255519 4129
73098 4124
2494701 4118
1920109 4113
1594731 4104
565 4102
2282310 4096
1920114 4094
2487150 4083
2282309 4078
51288 4056
2681309 4039
2681307 4030
1398493 4022
83655 3984
69220 3975
413497 3970
1920116 3961
535744 3955
1915310 3954
357233 3944
2681308 3934
2051905 3923
2077136 3906
357240 3871
1914861 3869
539812 3867
42895 3860
413501 3854
1848517 3834
69218 3830
2027919 3820
535726 3817
2052938 3804
61648 3793
399742 3789
2077137 3787
1199245 3770
1499973 3768
2492396 3738
1907578 3733
1497836 3727
1862273 3723
2494702 3700
1881855 3698
539813 3679
28141 3665
590046 3649
2153385 3648
2478464 3610
2057026 3602
61646 3597
1644867 3587
211595 3571
680320 3538
1849603 3517
881260 3508
2529381 3504
158822 3491
299767 3486
61647 3444
1644866 3429
1163710 3423
283686 3420
208223 3418
2500132 3408
550 3389
418698 3379
1862227 3372
1367496 3370
413502 3311
1692238 3293
158823 3266
2015795 3263
551989 3260
1158459 3158
138072 3123
83668 3103
1538228 3102
1778872 3065
158836 3039
2066051 3029
2664291 3022
1497839 3011
1497838 2967
67829 2906
1920128 2885
497725 2878
238202 2843
1410383 2792
497121 2740
1827481 2710
1719125 2660
1166130 2652
563 2577
2660638 2576
2026240 2558
624 2483
2697370 2394
208224 2364
138073 2350
1812935 2318
2077147 2300
2579935 2207
1811975 2073
693444 2015
2044467 1903
1505757 1784
2566012 1782
2077148 1738
67825 1668
1934254 1644
1560339 1630
891974 1579
1977566 1514
580 1482
2529380 1446
2529121 1441
2172103 1373
200446 1339
2479367 1304
67826 1278
1334193 1163
929813 990
1302411 929
2562449 876
208962 868
564 836
28901 803
885040 700
54736 680
1505597 663
2653932 635
575 533
548 423
545 399
1868135 367
61645 223
2686305 147
81476 144
2681986 122
1265478 114
2565914 11
623 -197
1259973 -210
2583577 -236
266145 -242
218034 -334
251542 -431
67824 -453
1458493 -458
1505596 -596
472834 -701
621 -739
535727 -763
1048758 -807
1644888 -834
577 -839
244225 -991
67828 -1075
1778264 -1241
1070130 -1315
237777 -1343
134287 -1767
1778262 -1791
60486 -1940
1920110 -1948
546 -1997
1331408 -2050
91843 -2131
2093698 -2140
158877 -2160
1639133 -2173
1134687 -2177
571 -2217
2013114 -2232
562 -2283
2341 -2293
263771 -2297
251535 -2420
203907 -2480
2576406 -2530
57706 -2570
168169 -2593
244366 -2594
1463165 -2631
2546350 -2797
2267618 -2821
1778263 -2887
2019568 -2933
255063 -2936
1563222 -2948
2077149 -2958
596416 -3084
576 -3100
54291 -3198
1972757 -3279
573 -3330
401619 -3363
599 -3389
1639131 -3423
622 -3446
2259647 -3447
213763 -3454
1072658 -3515
1686379 -3522
413503 -3532
1778874 -3536
1703250 -3538
1916651 -3567
1778875 -3605
133448 -3618
1497811 -3648
67827 -3676
1905288 -3702
2058152 -3722
2488567 -3739
2587528 -3741
35703 -3754
1702170 -3755
1778873 -3781
1497834 -3801
1639132 -3806
2697371 -3816
284011 -3855
2153354 -3860
2066049 -3907
1497810 -3915
1639134 -3945
1339201 -3953
199907 -3958
1835721 -3986
338906 -4021
203254 -4022
203255 -4023


f__Erwiniaceae

f__Erwiniaceae
5
set f__Erwiniaceae
setSize 41
pANOVA 2.7e-06
s.dist 0.424
p.adjustANOVA 5.4e-05



Top enriched genes

Top 20 genes
GeneID Gene Rank
549 4162
665913 4147
352158 4055
665914 4023
55209 3983
55211 3956
592316 3827
66269 3731
1076550 3664
1458355 3653
79967 3598
1619313 3516
2575375 3391
65700 3336
82987 3192
470934 3140
1615494 3096
2490851 3073
2479547 3069
552 2825

Click HERE to show all gene set members

All member genes
GeneID Gene Rank
549 4162
665913 4147
352158 4055
665914 4023
55209 3983
55211 3956
592316 3827
66269 3731
1076550 3664
1458355 3653
79967 3598
1619313 3516
2575375 3391
65700 3336
82987 3192
470934 3140
1615494 3096
2490851 3073
2479547 3069
552 2825
2487345 2548
472695 2309
1484158 2076
2052056 2011
215689 1900
2547962 1769
470933 1418
1891675 1387
9 1031
338565 1024
182337 808
2681984 621
92490 170
51229 -23
184999 -282
553 -552
59814 -2385
1922217 -2389
53336 -3060
1235990 -3662
1484157 -3753


f__Streptomycetaceae

f__Streptomycetaceae
79
set f__Streptomycetaceae
setSize 293
pANOVA 2.14e-05
s.dist 0.146
p.adjustANOVA 0.00036



Top enriched genes

Top 20 genes
GeneID Gene Rank
67352 4069
2064 4060
1436085 4044
2594462 4040
1827580 3935
42238 3880
97398 3760
1938 3735
1454112 3683
260742 3678
29308 3627
317660 3579
2078691 3539
68246 3515
35621 3465
68229 3441
1855352 3407
1928 3388
68175 3361
1703943 3355

Click HERE to show all gene set members

All member genes
GeneID Gene Rank
67352 4069
2064 4060
1436085 4044
2594462 4040
1827580 3935
42238 3880
97398 3760
1938 3735
1454112 3683
260742 3678
29308 3627
317660 3579
2078691 3539
68246 3515
35621 3465
68229 3441
1855352 3407
1928 3388
68175 3361
1703943 3355
1890 3348
2049881 3342
2099584 3246
1882757 3210
1030489 3159
68264 3156
264024 3149
1415561 3132
2662397 3130
2135430 3012
48665 3009
1077946 3006
2066 2952
68249 2931
33899 2927
1769566 2876
103232 2846
2018025 2828
1902 2642
1415544 2636
2594463 2563
295838 2550
68203 2452
2594457 2427
1725411 2399
66425 2376
206662 2317
68192 2313
1436084 2306
67372 2280
42684 2236
646637 2226
116188 2221
45398 2202
2014920 2195
1889 2194
2203204 2189
212423 2188
76728 2156
1914992 2144
285570 2136
1616117 2081
115647 2077
1930 2047
1907 2034
2496836 2025
33903 1980
1751294 1978
2653200 1954
659352 1932
1969 1919
42239 1917
1915 1912
2563602 1890
1783515 1881
2695266 1866
2072505 1832
2305221 1819
40318 1810
67366 1797
2184053 1793
1894 1778
2594454 1754
85558 1735
2306165 1721
565560 1687
2594459 1673
47763 1655
348043 1636
1932 1631
1984801 1629
174707 1608
2548456 1605
1265601 1599
2594461 1591
66881 1576
1841249 1560
2282738 1552
553510 1550
224537 1535
1577075 1527
1926 1525
67376 1521
1561022 1491
2506427 1490
1887 1476
444103 1457
41951 1424
1972846 1412
66869 1405
2686304 1403
73044 1370
2202000 1337
29303 1325
665007 1307
2126346 1302
1908 1299
164348 1290
1885 1287
67581 1261
68179 1244
68219 1237
67267 1227
565073 1220
2153485 1205
1442159 1197
2109593 1179
202862 1164
1355015 1153
1944 1133
862751 1132
1837283 1126
1893 1095
285450 1078
68214 1057
1911 1014
1943 1003
1437453 993
2203205 975
68570 962
2211357 956
67345 938
1935 909
1442032 901
324833 886
1886 872
2662065 864
1661694 859
58350 853
2174846 820
2059884 813
67283 735
1916 695
132473 693
576784 688
1881022 668
1690221 664
1849710 658
516183 648
2588707 638
68202 607
1912 580
2588708 553
193462 425
1136432 397
2692235 394
285557 393
1964449 389
83656 376
1940 357
1812480 346
1938841 325
1077944 286
68270 276
2692233 245
1967 238
67265 237
1649184 213
1900 174
68280 151
1740725 141
1906 126
2136401 100
379067 70
2420135 34
1038928 24
1849967 12
2684468 -3
42235 -17
42881 -33
2599401 -42
1950 -47
68180 -59
1961713 -68
2083284 -113
39478 -116
1736046 -124
188770 -149
2692234 -176
146923 -247
42236 -250
1851167 -253
319318 -264
2585716 -319
1977088 -320
1927 -384
38300 -420
67255 -445
1226757 -447
1535768 -463
1901 -485
2005885 -486
1826667 -492
67260 -527
28894 -550
1956 -558
408015 -581
2094021 -582
746675 -643
68173 -648
319426 -671
1522758 -678
1888 -721
66429 -758
67258 -786
54571 -806
1169025 -824
2582831 -836
1112731 -853
2175864 -869
2676871 -871
36818 -890
362257 -891
465541 -904
285473 -910
66887 -922
1892 -934
58343 -964
1400207 -985
58346 -993
67304 -1011
47716 -1023
516126 -1065
92644 -1175
1223307 -1179
1109743 -1203
1262452 -1207
1905 -1236
1238679 -1303
349971 -1311
1495638 -1320
193461 -1325
1931 -1353
68209 -1368
355249 -1377
234612 -1429
55404 -1430
29309 -1499
1971 -1550
1642299 -1611
1914 -1664
1086502 -1670
68278 -1689
2594455 -1725
1653203 -1849
75293 -1856
1961 -1865
255848 -1895
97405 -1920
159449 -1931
2305220 -1939
68258 -1970
1897 -1979
66424 -1999
1582798 -2004
67297 -2064
2099583 -2171
83291 -2183
67294 -2195
1218177 -2234
68223 -2382
1934390 -2418
224730 -2602
67375 -2818
66431 -2819
2203210 -3195
1960 -3215
270689 -3252
204925 -3302
310779 -3482
68245 -3509
1265536 -3583
285525 -3593


f__Listeriaceae

f__Listeriaceae
63
set f__Listeriaceae
setSize 21
pANOVA 2.25e-05
s.dist 0.534
p.adjustANOVA 0.00036



Top enriched genes

Top 20 genes
GeneID Gene Rank
1399115 4139
1224749 4064
1849031 4047
41170 3777
1641 3685
1640 3525
360911 3198
84135 3131
1379 3067
1006155 2700
132920 2468
2756 2444
2051906 2304
1638 1910
1643 1625
1639 1554
332410 1000
1642 970
29391 699
340146 -125

Click HERE to show all gene set members

All member genes
GeneID Gene Rank
1399115 4139
1224749 4064
1849031 4047
41170 3777
1641 3685
1640 3525
360911 3198
84135 3131
1379 3067
1006155 2700
132920 2468
2756 2444
2051906 2304
1638 1910
1643 1625
1639 1554
332410 1000
1642 970
29391 699
340146 -125
1389960 -2461


f__Oxalobacteraceae

f__Oxalobacteraceae
28
set f__Oxalobacteraceae
setSize 61
pANOVA 7.55e-05
s.dist 0.294
p.adjustANOVA 0.0011



Top enriched genes

Top 20 genes
GeneID Gene Rank
2058624 3798
1809410 3458
2014887 3455
1296669 3088
321983 2902
1236179 2865
341045 2732
2045208 2498
279113 2433
413882 2411
1938606 2379
2590869 2320
1050370 2314
47229 2298
847 2293
401471 2286
2601898 2276
1141883 2223
55508 2179
863372 2108

Click HERE to show all gene set members

All member genes
GeneID Gene Rank
2058624 3798
1809410 3458
2014887 3455
1296669 3088
321983 2902
1236179 2865
341045 2732
2045208 2498
279113 2433
413882 2411
1938606 2379
2590869 2320
1050370 2314
47229 2298
847 2293
401471 2286
2601898 2276
1141883 2223
55508 2179
863372 2108
2058625 2012
391953 1938
158899 1858
392593 1685
1644131 1664
321984 1663
2697032 1602
2072590 1572
864828 1558
426114 1396
2497863 1383
29581 1303
34103 1250
2082386 1223
871742 1181
1834205 1121
1678028 1034
321985 1005
1593482 995
204773 931
105560 921
945844 833
1707785 818
1469502 726
375286 717
368607 602
1768242 547
242828 405
80842 255
2025949 202
279058 177
964 96
864051 22
169973 -221
34029 -238
28068 -583
371156 -789
76731 -1693
926 -1799
946333 -1810
1658665 -1890


f__Chromobacteriaceae

f__Chromobacteriaceae
30
set f__Chromobacteriaceae
setSize 21
pANOVA 0.000131
s.dist 0.482
p.adjustANOVA 0.00175



Top enriched genes

Top 20 genes
GeneID Gene Rank
1906741 4074
748280 4054
1938604 3986
536 3965
1778675 3927
394935 3841
2605945 3643
1590041 3628
2059672 3446
2202141 3346
1192162 3110
519081 2958
553088 2473
332411 1731
57480 1686
1537400 496
1108595 493
2202142 -1058
168471 -1110
2496266 -1442

Click HERE to show all gene set members

All member genes
GeneID Gene Rank
1906741 4074
748280 4054
1938604 3986
536 3965
1778675 3927
394935 3841
2605945 3643
1590041 3628
2059672 3446
2202141 3346
1192162 3110
519081 2958
553088 2473
332411 1731
57480 1686
1537400 496
1108595 493
2202142 -1058
168471 -1110
2496266 -1442
201157 -4017


f__Morganellaceae

f__Morganellaceae
8
set f__Morganellaceae
setSize 31
pANOVA 0.000145
s.dist -0.395
p.adjustANOVA 0.00178



Top enriched genes

Top 20 genes
GeneID Gene Rank
516075 -4000
1921565 -3966
126385 -3670
183417 -3624
585 -3511
290109 -3465
584 -3442
235559 -3235
2218628 -2562
235567 -2419
628 -2288
2027290 -2281
626774 -2211
575657 -2118
230089 -1605
102862 -1464
638 -1290
351679 -1112
40577 -1107
333962 -1033

Click HERE to show all gene set members

All member genes
GeneID Gene Rank
516075 -4000
1921565 -3966
126385 -3670
183417 -3624
585 -3511
290109 -3465
584 -3442
235559 -3235
2218628 -2562
235567 -2419
628 -2288
2027290 -2281
626774 -2211
575657 -2118
230089 -1605
102862 -1464
638 -1290
351679 -1112
40577 -1107
333962 -1033
158850 -929
536059 -665
40576 -390
582 -387
1987580 -382
29488 -50
587 -9
588 40
351671 71
634113 2330
291112 3134


f__Herelleviridae

f__Herelleviridae
156
set f__Herelleviridae
setSize 63
pANOVA 0.00059
s.dist 0.251
p.adjustANOVA 0.00674



Top enriched genes

Top 20 genes
GeneID Gene Rank
1985183 4140
2126724 4114
1985175 4092
2560335 4079
1985179 4053
2593638 4000
2560334 3987
1909403 3963
2560337 3951
2283013 3926
1985182 3856
2024232 3840
1918006 3812
1984785 3769
1918005 3764
2045370 3759
1805953 3755
1918008 3743
2601669 3739
1983465 3707

Click HERE to show all gene set members

All member genes
GeneID Gene Rank
1985183 4140
2126724 4114
1985175 4092
2560335 4079
1985179 4053
2593638 4000
2560334 3987
1909403 3963
2560337 3951
2283013 3926
1985182 3856
2024232 3840
1918006 3812
1984785 3769
1918005 3764
2045370 3759
1805953 3755
1918008 3743
2601669 3739
1983465 3707
2589663 3652
2008614 3619
2030094 3450
1805948 3393
1985178 3309
1918011 3104
1918009 2800
1910935 2795
1918722 2284
1918724 2071
1918723 2002
1985176 1844
1873894 1603
2024230 1556
2059878 1402
2490451 1240
1776293 959
2301685 846
1910936 165
1921018 75
2079258 -168
1985180 -298
1805951 -545
1987727 -1003
2282402 -1085
1837830 -1102
1852564 -1161
1873998 -1174
2560329 -1462
1909401 -1470
1909402 -2060
1805956 -2202
2560332 -2626
2608370 -2823
2419623 -3071
1985177 -3087
2024234 -3139
2591380 -3388
2596657 -3559
292029 -3688
2560330 -3711
2560555 -3925
1922328 -3935


f__Trypanosomatidae

f__Trypanosomatidae
141
set f__Trypanosomatidae
setSize 18
pANOVA 0.00167
s.dist 0.428
p.adjustANOVA 0.0178



Top enriched genes

Top 20 genes
GeneID Gene Rank
5681 4127
5664 3958
5665 3928
5661 3895
5692 3746
83891 3638
5659 3279
5691 3212
71804 2774
5671 2360
157538 2289
5699 1575
5679 1100
67003 953
5678 -131
5698 -1866
5660 -2279
5693 -3488

Click HERE to show all gene set members

All member genes
GeneID Gene Rank
5681 4127
5664 3958
5665 3928
5661 3895
5692 3746
83891 3638
5659 3279
5691 3212
71804 2774
5671 2360
157538 2289
5699 1575
5679 1100
67003 953
5678 -131
5698 -1866
5660 -2279
5693 -3488


f__Myoviridae

f__Myoviridae
157
set f__Myoviridae
setSize 75
pANOVA 0.00312
s.dist 0.198
p.adjustANOVA 0.0307



Top enriched genes

Top 20 genes
GeneID Gene Rank
1883376 4192.0
1883373 4188.0
2169990 4187.0
2560731 4185.0
2588092 4177.0
2047786 4170.0
2599404 4165.5
2530028 4164.0
1984783 4154.0
2162689 4128.0
2560434 4115.0
1883379 4105.0
2560629 4103.0
2163633 4082.0
1883371 4057.0
2663324 4037.0
2202564 4032.0
1921530 4021.0
2560543 4017.0
2575324 3994.0

Click HERE to show all gene set members

All member genes
GeneID Gene Rank
1883376 4192.0
1883373 4188.0
2169990 4187.0
2560731 4185.0
2588092 4177.0
2047786 4170.0
2599404 4165.5
2530028 4164.0
1984783 4154.0
2162689 4128.0
2560434 4115.0
1883379 4105.0
2560629 4103.0
2163633 4082.0
1883371 4057.0
2663324 4037.0
2202564 4032.0
1921530 4021.0
2560543 4017.0
2575324 3994.0
1003177 3992.0
499235 3981.0
1971232 3937.0
2562641 3914.0
29252 3846.0
1985354 3754.0
1918726 3637.0
263386 3572.0
1335230 3494.0
2163963 3223.0
2170705 3071.0
2562174 2934.0
2560680 2895.0
1567012 2890.0
2484638 2837.0
1493510 2775.0
2267248 2061.0
2015814 2035.0
1084719 1974.0
2530023 1411.0
2650873 388.0
1567014 149.0
1204535 135.0
1815509 116.0
1279082 -74.0
2606591 -180.0
458639 -351.0
1136534 -510.0
238854 -895.0
1755679 -1150.0
2560751 -1192.0
2591025 -1598.0
1654919 -1600.0
1739968 -1821.0
2560336 -2039.0
2664939 -2268.0
340435 -2305.0
2678601 -2373.0
336724 -2529.0
1792242 -2815.0
1296660 -2852.0
998086 -3216.0
2500762 -3257.0
1141136 -3265.0
2560689 -3599.0
1912592 -3734.0
1883369 -3773.0
1161927 -3807.0
2041389 -3814.0
1748773 -3902.0
2026081 -3908.0
393598 -3957.0
2560435 -3999.0
2608368 -4006.0
2587814 -4019.0


f__Thermoguttaceae

f__Thermoguttaceae
117
set f__Thermoguttaceae
setSize 53
pANOVA 0.00326
s.dist -0.234
p.adjustANOVA 0.0307



Top enriched genes

Top 20 genes
GeneID Gene Rank
2527962 -3378
1331910 -3326
2527984 -3131
2528026 -3099
2528029 -3036
2528008 -3012
2527990 -3000
2528022 -2620
2527995 -2582
2527974 -2518
2527968 -2383
2527965 -2329
1930276 -2326
2528007 -2315
2528025 -2210
2026780 -1826
2527963 -1807
2527996 -1683
2528021 -1681
2596890 -1619

Click HERE to show all gene set members

All member genes
GeneID Gene Rank
2527962 -3378
1331910 -3326
2527984 -3131
2528026 -3099
2528029 -3036
2528008 -3012
2527990 -3000
2528022 -2620
2527995 -2582
2527974 -2518
2527968 -2383
2527965 -2329
1930276 -2326
2528007 -2315
2528025 -2210
2026780 -1826
2527963 -1807
2527996 -1683
2528021 -1681
2596890 -1619
2528028 -1612
2527979 -1596
2527983 -1528
2528009 -1518
2527992 -1369
2527964 -1357
2527994 -1233
2527980 -1198
2528027 -958
2527975 -816
2527998 -730
2528010 -702
2528023 -691
2527971 -686
1930273 -622
2527978 -599
2527973 -506
2527989 -504
2528017 -159
2528030 13
2527981 271
2527988 291
2527993 363
1930275 487
2527997 536
2528018 1207
2527967 1787
1930277 2158
2527972 2210
2527982 2675
2527976 3026
1930274 3356
2528020 3435


f__Microbacteriaceae

f__Microbacteriaceae
80
set f__Microbacteriaceae
setSize 102
pANOVA 0.00416
s.dist -0.165
p.adjustANOVA 0.0345



Top enriched genes

Top 20 genes
GeneID Gene Rank
1987356 -3788
1855377 -3517
2508880 -3485
1978566 -3396
1619308 -3133
2220095 -2970
232537 -2917
2599293 -2470
2606451 -2452
2282656 -2412
2489212 -2365
708131 -2342
2585717 -2255
199592 -2236
69373 -2206
82380 -2147
2480625 -2101
1575 -1977
2498704 -1945
2609255 -1938

Click HERE to show all gene set members

All member genes
GeneID Gene Rank
1987356 -3788
1855377 -3517
2508880 -3485
1978566 -3396
1619308 -3133
2220095 -2970
232537 -2917
2599293 -2470
2606451 -2452
2282656 -2412
2489212 -2365
708131 -2342
2585717 -2255
199592 -2236
69373 -2206
82380 -2147
2480625 -2101
1575 -1977
2498704 -1945
2609255 -1938
2609258 -1933
2079791 -1925
41986 -1870
1935379 -1867
2609253 -1844
2603598 -1750
2609257 -1732
2683590 -1682
367477 -1614
2033 -1424
2583822 -1419
1159327 -1410
28447 -1393
743009 -1367
1784719 -1361
2079792 -1339
1938334 -1336
2268461 -1216
2070337 -1190
2609254 -1153
2509458 -1145
1793722 -1071
36805 -1009
104336 -941
2483401 -830
2419774 -820
2070347 -764
2592654 -738
529884 -720
2048898 -631
2014534 -587
33888 -585
670052 -513
1072463 -505
1696072 -479
59737 -446
453304 -388
2609252 -370
904291 -361
2541726 -357
84292 -355
1906742 -347
2592652 -323
684552 -266
370764 -258
1561023 -255
2079575 -237
2080742 -201
205332 -187
2614638 -186
1795630 -181
1714373 -115
273677 -89
162426 -43
2603292 17
279828 54
399736 171
1671680 181
2035 201
2419771 224
2614639 485
2509455 564
2103230 646
1798223 689
1916917 841
1905847 856
1446794 1017
150123 1063
674079 1067
912630 1180
280149 1198
300019 1233
589382 1314
2070348 1391
110937 2337
412690 2440
535712 2719
145458 2797
33887 3084
2594795 3196
1795053 3899
329265 4183


f__Alcaligenaceae

f__Alcaligenaceae
29
set f__Alcaligenaceae
setSize 45
pANOVA 0.0042
s.dist -0.247
p.adjustANOVA 0.0345



Top enriched genes

Top 20 genes
GeneID Gene Rank
520 -3863
323284 -3667
1007105 -3527
511 -3433
217204 -3406
206506 -3358
302406 -3247
1697043 -3232
1977852 -3183
2593958 -3138
1331258 -3094
521 -2986
217203 -2926
32002 -2888
463024 -2875
29575 -2864
1940612 -2784
85698 -2758
72557 -2700
35814 -2544

Click HERE to show all gene set members

All member genes
GeneID Gene Rank
520 -3863
323284 -3667
1007105 -3527
511 -3433
217204 -3406
206506 -3358
302406 -3247
1697043 -3232
1977852 -3183
2593958 -3138
1331258 -3094
521 -2986
217203 -2926
32002 -2888
463024 -2875
29575 -2864
1940612 -2784
85698 -2758
72557 -2700
35814 -2544
103855 -2499
310575 -2191
518 -1686
2282475 -1492
123899 -1441
2028345 -1371
463025 -1266
94624 -1026
2488560 -692
1416803 90
84590 115
463014 685
1416806 854
75697 1471
1881016 1486
463040 1500
1758194 1678
1472345 1924
1851544 2430
2652177 3201
643674 3497
1746199 3522
2163011 3757
90245 3946
519 4112


f__Mimiviridae

f__Mimiviridae
159
set f__Mimiviridae
setSize 21
pANOVA 0.00432
s.dist -0.36
p.adjustANOVA 0.0345



Top enriched genes

Top 20 genes
GeneID Gene Rank
2487768 -3984
1977640 -3660
2126985 -3570
1094892 -3128
1513235 -3068
2024608 -2943
2487766 -2913
1977633 -2885
2487765 -2760
1977638 -2424
1302812 -2012
1977631 -1505
2596887 -1299
2487769 -614
2487775 -363
2487770 123
1737588 508
1932880 728
985782 1313
2126984 2070

Click HERE to show all gene set members

All member genes
GeneID Gene Rank
2487768 -3984
1977640 -3660
2126985 -3570
1094892 -3128
1513235 -3068
2024608 -2943
2487766 -2913
1977633 -2885
2487765 -2760
1977638 -2424
1302812 -2012
1977631 -1505
2596887 -1299
2487769 -614
2487775 -363
2487770 123
1737588 508
1932880 728
985782 1313
2126984 2070
2496520 3056


f__Burkholderiaceae

f__Burkholderiaceae
27
set f__Burkholderiaceae
setSize 133
pANOVA 0.00479
s.dist 0.142
p.adjustANOVA 0.0356



Top enriched genes

Top 20 genes
GeneID Gene Rank
69003 4186
341523 4153
576610 3966
28097 3891
640510 3630
556054 3611
2518599 3358
576611 3330
2571747 3282
1835254 3275
75105 3160
2268024 3155
656179 2985
96344 2844
1873897 2762
1637837 2746
57975 2673
1795874 2646
1926494 2595
106590 2580

Click HERE to show all gene set members

All member genes
GeneID Gene Rank
69003 4186
341523 4153
576610 3966
28097 3891
640510 3630
556054 3611
2518599 3358
576611 3330
2571747 3282
1835254 3275
75105 3160
2268024 3155
656179 2985
96344 2844
1873897 2762
1637837 2746
57975 2673
1795874 2646
1926494 2595
106590 2580
134536 2567
82541 2551
188058 2528
164546 2516
1678678 2454
445709 2422
29443 2391
248026 2341
93221 2301
1553431 2288
36773 2278
640512 2273
68895 2201
1636423 2148
261302 2121
1891094 2107
140098 2106
169427 2020
337 2010
573737 1999
420953 1852
1389192 1851
82633 1847
1385591 1814
488446 1811
2571748 1724
656178 1589
151783 1587
28095 1581
1637853 1480
169430 1468
148447 1393
93220 1364
640511 1354
93222 1310
2571746 1231
1740163 1158
101571 1152
2604047 1105
265293 1094
1637831 1093
1804984 955
134537 910
95486 883
758793 797
36873 747
92647 738
1796606 707
1528693 696
47671 690
416344 581
948107 529
87883 524
2547399 486
758782 462
41899 440
179879 386
1207504 383
60552 379
488731 294
2026199 142
95485 125
488732 88
159450 26
1503055 18
488729 -51
488447 -129
482957 -132
60548 -142
60550 -183
2217913 -241
342113 -297
1310165 -306
1637862 -329
1743168 -376
1637869 -393
109791 -395
70356 -406
2211211 -410
152480 -428
298387 -597
1179675 -711
1795043 -712
119219 -753
152500 -766
329 -883
28450 -919
1385592 -930
292 -1012
758796 -1040
1761016 -1049
93219 -1090
412963 -1348
326454 -1405
311230 -1490
1637841 -1551
876364 -1552
13373 -1646
252970 -1695
367825 -1743
556053 -1898
1097668 -1930
1705310 -2073
1503054 -2133
105219 -2294
1855726 -2734
190721 -3074
305 -3407
93218 -3620
2527775 -3815
263504 -3893
290808 -4029
60924 -4030


f__Micromonosporaceae

f__Micromonosporaceae
89
set f__Micromonosporaceae
setSize 45
pANOVA 0.0049
s.dist -0.243
p.adjustANOVA 0.0356



Top enriched genes

Top 20 genes
GeneID Gene Rank
134676 -4028
113561 -3120
69485 -3069
168697 -2845
2675222 -2795
2201999 -2670
113562 -2469
649831 -2454
648999 -2093
1182970 -2058
219305 -2045
47872 -2021
47858 -1640
946334 -1632
285665 -1595
299146 -1572
718015 -1560
2039870 -1536
291594 -1521
1003110 -1314

Click HERE to show all gene set members

All member genes
GeneID Gene Rank
134676 -4028
113561 -3120
69485 -3069
168697 -2845
2675222 -2795
2201999 -2670
113562 -2469
649831 -2454
648999 -2093
1182970 -2058
219305 -2045
47872 -2021
47858 -1640
946334 -1632
285665 -1595
299146 -1572
718015 -1560
2039870 -1536
291594 -1521
1003110 -1314
2024580 -1214
261654 -1129
1881 -1118
356852 -843
47857 -811
47865 -645
351187 -378
307121 -373
168695 -352
35754 -271
2108470 -268
1866 -212
196914 -38
1914461 56
479978 62
1874 166
709883 280
1877 511
299152 560
2071627 596
47850 753
1867 1154
356851 1202
2583243 1648
1239282 3615


f__Carnobacteriaceae

f__Carnobacteriaceae
67
set f__Carnobacteriaceae
setSize 11
pANOVA 0.00606
s.dist 0.478
p.adjustANOVA 0.0418



Top enriched genes

Top 20 genes
GeneID Gene Rank
1564681 3876
2592351 3823
708126 3288
1903686 3277
2748 3076
208596 2251
1911586 1853
2496265 1518
147709 1022
2751 270
29394 -1779

Click HERE to show all gene set members

All member genes
GeneID Gene Rank
1564681 3876
2592351 3823
708126 3288
1903686 3277
2748 3076
208596 2251
1911586 1853
2496265 1518
147709 1022
2751 270
29394 -1779


f__Nocardiaceae

f__Nocardiaceae
86
set f__Nocardiaceae
setSize 52
pANOVA 0.00627
s.dist -0.22
p.adjustANOVA 0.0418



Top enriched genes

Top 20 genes
GeneID Gene Rank
251637 -4016
2054902 -3820
1723645 -3471
2594007 -3283
43767 -3031
1833 -2786
1564114 -2531
2567884 -2396
37919 -2354
1805827 -2139
334542 -2135
2499145 -2048
191292 -1943
38310 -1937
1829 -1910
1828 -1877
1823 -1816
679318 -1616
1831 -1602
1653479 -1542

Click HERE to show all gene set members

All member genes
GeneID Gene Rank
251637 -4016
2054902 -3820
1723645 -3471
2594007 -3283
43767 -3031
1833 -2786
1564114 -2531
2567884 -2396
37919 -2354
1805827 -2139
334542 -2135
2499145 -2048
191292 -1943
38310 -1937
1829 -1910
1828 -1877
1823 -1816
679318 -1616
1831 -1602
1653479 -1542
37326 -1535
1990687 -1509
37330 -1506
2507582 -1498
1047172 -1472
1830 -1395
2213200 -1379
132919 -1284
37329 -1163
1727214 -1089
1824 -892
1653478 -880
1807790 -694
1302308 -689
2382165 -675
933800 -554
2663121 -295
230533 -214
455432 -192
935199 530
135487 630
1500843 655
37332 780
251638 793
2490853 857
1033922 1051
402236 1270
186196 3329
1570939 3343
103816 3550
1045808 3719
227347 4172


f__Caulobacteraceae

f__Caulobacteraceae
50
set f__Caulobacteraceae
setSize 30
pANOVA 0.00716
s.dist 0.284
p.adjustANOVA 0.0458



Top enriched genes

Top 20 genes
GeneID Gene Rank
41276 4125
1679497 3810
2579977 3697
155892 3222
366602 3200
69665 3120
349221 3055
69395 2917
88688 2488
69666 2283
2686094 2242
1325724 1863
284016 1706
1827469 1434
1938605 1281
767892 1272
588932 1143
2201350 934
2591463 860
74313 302

Click HERE to show all gene set members

All member genes
GeneID Gene Rank
41276 4125
1679497 3810
2579977 3697
155892 3222
366602 3200
69665 3120
349221 3055
69395 2917
88688 2488
69666 2283
2686094 2242
1325724 1863
284016 1706
1827469 1434
1938605 1281
767892 1272
588932 1143
2201350 934
2591463 860
74313 302
2570229 261
1868589 0
2561924 -36
1759059 -248
2560058 -305
1940610 -483
991904 -778
293 -1534
78587 -2189
1532555 -2334


f__Bradyrhizobiaceae

f__Bradyrhizobiaceae
36
set f__Bradyrhizobiaceae
setSize 55
pANOVA 0.00875
s.dist 0.205
p.adjustANOVA 0.0539



Top enriched genes

Top 20 genes
GeneID Gene Rank
188722 4182
53254 3035
375 2632
2599805 2499
1404367 2384
1404864 2328
190148 2316
2599640 2308
1325095 2249
1404768 2225
199684 2198
1274631 1868
1842539 1796
1325090 1747
255045 1744
204088 1715
114615 1626
858422 1428
1437360 1332
376 1308

Click HERE to show all gene set members

All member genes
GeneID Gene Rank
188722 4182
53254 3035
375 2632
2599805 2499
1404367 2384
1404864 2328
190148 2316
2599640 2308
1325095 2249
1404768 2225
199684 2198
1274631 1868
1842539 1796
1325090 1747
255045 1744
204088 1715
114615 1626
858422 1428
1437360 1332
376 1308
1867715 1151
335659 1071
709797 1064
1792307 1052
2599819 1044
722472 1030
115808 951
2057741 944
167468 915
1223566 903
2592817 889
244734 647
151416 614
44255 594
29448 579
1526658 572
2592814 563
1325107 525
1882747 473
2015316 337
913 247
912 231
1076 222
151454 172
1333996 121
288000 82
931866 -41
319017 -71
943830 -356
2493093 -500
1325115 -660
40137 -706
151419 -2090
1355477 -2290
1035 -2794


f__Plasmodiidae

f__Plasmodiidae
140
set f__Plasmodiidae
setSize 22
pANOVA 0.0111
s.dist -0.313
p.adjustANOVA 0.0655



Top enriched genes

Top 20 genes
GeneID Gene Rank
880535 -3930
85471 -3631
647221 -2892
5858 -2619
5827 -2095
5833 -2069
36330 -2007
5850 -1951
5857 -1731
5860 -1432
5849 -1350
880534 -1295
5821 -1146
208452 -969
880536 -854
720590 -570
77519 -480
5854 -263
5861 -249
5855 1592

Click HERE to show all gene set members

All member genes
GeneID Gene Rank
880535 -3930
85471 -3631
647221 -2892
5858 -2619
5827 -2095
5833 -2069
36330 -2007
5850 -1951
5857 -1731
5860 -1432
5849 -1350
880534 -1295
5821 -1146
208452 -969
880536 -854
720590 -570
77519 -480
5854 -263
5861 -249
5855 1592
52288 1661
5825 1781


f__Helicobacteraceae

f__Helicobacteraceae
57
set f__Helicobacteraceae
setSize 27
pANOVA 0.0165
s.dist -0.267
p.adjustANOVA 0.0943



Top enriched genes

Top 20 genes
GeneID Gene Rank
1548018 -3912
222136 -3780
135569 -3643
32025 -3329
202747 -3309
76936 -3020
29419 -3019
148813 -2987
844 -2740
138563 -2223
210 -2150
214 -2016
37372 -1761
1249480 -1629
1176482 -1504
2590022 -1316
56877 -885
104628 -105
2509341 -60
39766 150

Click HERE to show all gene set members

All member genes
GeneID Gene Rank
1548018 -3912
222136 -3780
135569 -3643
32025 -3329
202747 -3309
76936 -3020
29419 -3019
148813 -2987
844 -2740
138563 -2223
210 -2150
214 -2016
37372 -1761
1249480 -1629
1176482 -1504
2590022 -1316
56877 -885
104628 -105
2509341 -60
39766 150
1591088 427
45498 550
35818 2687
123841 2697
213 2859
269261 3068
212 3581


f__Rhizobiaceae

f__Rhizobiaceae
37
set f__Rhizobiaceae
setSize 60
pANOVA 0.0173
s.dist 0.178
p.adjustANOVA 0.0955



Top enriched genes

Top 20 genes
GeneID Gene Rank
2020312 4091
1869170 4046
2020311 3991
648995 3964
2028343 3948
398 3920
2020313 3704
348824 3449
384 2994
2048897 2916
1571470 2588
1120045 2543
391 2481
382 2401
358 2234
136098 2122
1335060 2094
1312183 1951
1176649 1882
2341112 1790

Click HERE to show all gene set members

All member genes
GeneID Gene Rank
2020312 4091
1869170 4046
2020311 3991
648995 3964
2028343 3948
398 3920
2020313 3704
348824 3449
384 2994
2048897 2916
1571470 2588
1120045 2543
391 2481
382 2401
358 2234
136098 2122
1335060 2094
1312183 1951
1176649 1882
2341112 1790
1538158 1751
2060726 1750
2603277 1709
861208 1698
1301032 1660
1914541 1588
56730 1520
1825976 1475
1981173 1380
1703969 1343
194963 1326
1842534 1182
1752398 1107
359 1001
399 954
380 874
424182 789
2664893 675
110321 308
2580515 161
1273132 -99
29449 -311
396 -438
879274 -557
1335061 -688
1279031 -1079
155567 -1147
556287 -1318
2590777 -1532
430451 -1537
160699 -2027
716925 -2254
106592 -2355
794846 -2376
1435607 -2508
373 -2727
34020 -2858
1842536 -2992
34021 -3021
309868 -3125


f__Peptostreptococcaceae

f__Peptostreptococcaceae
70
set f__Peptostreptococcaceae
setSize 14
pANOVA 0.0192
s.dist -0.362
p.adjustANOVA 0.102



Top enriched genes

Top 20 genes
GeneID Gene Rank
1849830 -3264
2081703 -3175
1490 -2931
1731 -2417
29358 -2350
36841 -2082
1261 -1720
1511 -1417
143361 -1077
1507512 -315
89152 -122
1115758 -95
1496 -70
1505 1367

Click HERE to show all gene set members

All member genes
GeneID Gene Rank
1849830 -3264
2081703 -3175
1490 -2931
1731 -2417
29358 -2350
36841 -2082
1261 -1720
1511 -1417
143361 -1077
1507512 -315
89152 -122
1115758 -95
1496 -70
1505 1367


f__Neisseriaceae

f__Neisseriaceae
31
set f__Neisseriaceae
setSize 30
pANOVA 0.0201
s.dist 0.245
p.adjustANOVA 0.104



Top enriched genes

Top 20 genes
GeneID Gene Rank
28091 3982
1853276 3696
1853278 3677
539 3670
487 3647
2290923 3635
483 3520
72 3493
2052837 3145
2528037 3129
63 2875
486 2564
96942 2200
655307 2125
489 1515
485 1359
1196083 1284
495 966
640030 331
493 -162

Click HERE to show all gene set members

All member genes
GeneID Gene Rank
28091 3982
1853276 3696
1853278 3677
539 3670
487 3647
2290923 3635
483 3520
72 3493
2052837 3145
2528037 3129
63 2875
486 2564
96942 2200
655307 2125
489 1515
485 1359
1196083 1284
495 966
640030 331
493 -162
2666100 -553
488 -754
504 -757
682798 -1152
326522 -1549
641148 -1633
484 -1907
28449 -2649
492 -3415
326523 -3704


f__Sphingomonadaceae

f__Sphingomonadaceae
45
set f__Sphingomonadaceae
setSize 94
pANOVA 0.0268
s.dist 0.133
p.adjustANOVA 0.13



Top enriched genes

Top 20 genes
GeneID Gene Rank
332055 4151
205844 4093
2565555 3949
2082188 3838
1673076 3773
1855519 3740
2565554 3659
2319844 3574
135719 3566
1332080 3499
1315974 3473
46429 3199
158754 3086
1843368 2979
1983755 2893
1609758 2817
13690 2629
76947 2549
1523415 2521
702113 2494

Click HERE to show all gene set members

All member genes
GeneID Gene Rank
332055 4151
205844 4093
2565555 3949
2082188 3838
1673076 3773
1855519 3740
2565554 3659
2319844 3574
135719 3566
1332080 3499
1315974 3473
46429 3199
158754 3086
1843368 2979
1983755 2893
1609758 2817
13690 2629
76947 2549
1523415 2521
702113 2494
1390395 2450
1806885 2445
1813879 2409
627192 2302
335406 2274
1550728 2175
93064 2159
407020 2079
1560345 2063
1938607 1942
2054227 1935
13689 1887
336203 1854
2584094 1761
90322 1732
1549858 1680
2509719 1643
28214 1623
2676077 1609
304378 1363
1016987 1355
1842535 1350
117207 1203
1357916 1199
152682 1027
120107 1013
46624 893
179878 811
158500 785
2599297 599
2571749 545
484429 488
1913578 435
169176 284
1609977 1
1914525 -1
1176536 -35
542 -75
2565556 -87
2072936 -138
2219696 -257
33052 -273
1961362 -290
397260 -342
1921510 -634
1030157 -785
2492837 -856
267128 -893
1327635 -938
2594473 -955
160791 -1067
2567938 -1099
2681549 -1173
1874061 -1228
310581 -1272
745310 -1345
941907 -1485
332056 -1786
1634516 -1833
1866325 -1868
363835 -1991
2675225 -2084
1850238 -2104
2698679 -2280
292913 -2304
1515612 -2366
48935 -2483
1892855 -2551
1922222 -2686
2077182 -3101
33050 -3414
1130949 -3673
208080 -3879
34015 -4014


f__Pseudonocardiaceae

f__Pseudonocardiaceae
90
set f__Pseudonocardiaceae
setSize 51
pANOVA 0.0268
s.dist -0.18
p.adjustANOVA 0.13



Top enriched genes

Top 20 genes
GeneID Gene Rank
340345 -3850
1911175 -2849
2665642 -2790
2653857 -2711
1096868 -2684
1814 -2650
2074 -2459
1586287 -2277
60894 -2229
40990 -1985
1836 -1947
37632 -1784
1612551 -1733
1641402 -1658
103733 -1622
43357 -1594
1690815 -1512
33910 -1494
445576 -1363
632569 -1355

Click HERE to show all gene set members

All member genes
GeneID Gene Rank
340345 -3850
1911175 -2849
2665642 -2790
2653857 -2711
1096868 -2684
1814 -2650
2074 -2459
1586287 -2277
60894 -2229
40990 -1985
1836 -1947
37632 -1784
1612551 -1733
1641402 -1658
103733 -1622
43357 -1594
1690815 -1512
33910 -1494
445576 -1363
632569 -1355
1852 -1298
103731 -1213
240495 -1201
208439 -1121
1470176 -1108
1447705 -984
756733 -944
211114 -932
330084 -875
1653480 -774
76022 -674
42197 -489
1804986 -423
31958 -217
2030 -6
2528243 25
76726 108
40989 365
129921 370
703222 567
530584 601
1896961 625
40988 751
860235 1221
115433 1268
2072503 1427
40567 1672
1612552 2068
211455 2920
2017 3436
33921 4035


f__Xanthomonadaceae

f__Xanthomonadaceae
10
set f__Xanthomonadaceae
setSize 62
pANOVA 0.0298
s.dist -0.16
p.adjustANOVA 0.14



Top enriched genes

Top 20 genes
GeneID Gene Rank
40324 -3906
324869 -3761
456327 -3317
128780 -3246
2508168 -3231
2072406 -3184
2371 -3076
2040586 -2895
1985254 -2796
2698682 -2791
56454 -2636
2211160 -2606
56455 -2548
2072414 -2429
2546450 -2194
84531 -2190
262324 -2011
2303750 -1993
2072413 -1781
2072412 -1751

Click HERE to show all gene set members

All member genes
GeneID Gene Rank
40324 -3906
324869 -3761
456327 -3317
128780 -3246
2508168 -3231
2072406 -3184
2371 -3076
2040586 -2895
1985254 -2796
2698682 -2791
56454 -2636
2211160 -2606
56455 -2548
2072414 -2429
2546450 -2194
84531 -2190
262324 -2011
2303750 -1993
2072413 -1781
2072412 -1751
2006110 -1704
2072409 -1571
2282124 -1408
2290922 -1324
2202149 -1256
56448 -975
346 -967
56459 -966
56460 -717
453783 -704
2511995 -636
2072407 -612
442694 -549
2691571 -424
370777 -416
339 -327
2591633 -48
1605891 -18
56450 31
343 472
216778 476
1904944 509
1176533 815
2005046 816
29447 819
1827305 866
314722 950
56453 1054
415229 1176
48664 1189
1896164 1252
2072408 1285
2565782 1365
1444770 1611
435897 1717
1324796 1742
56458 2103
347 2455
69 2508
53413 2512
90270 2829
2072405 2896


f__Hafniaceae

f__Hafniaceae
7
set f__Hafniaceae
setSize 13
pANOVA 0.0343
s.dist 0.339
p.adjustANOVA 0.157



Top enriched genes

Top 20 genes
GeneID Gene Rank
1756993 4107
1263550 4048
1821960 3345
1848580 3310
546367 3094
703 2738
1972431 2448
93378 2292
1578828 374
569 -666
82983 -1648
67780 -1818
636 -2478

Click HERE to show all gene set members

All member genes
GeneID Gene Rank
1756993 4107
1263550 4048
1821960 3345
1848580 3310
546367 3094
703 2738
1972431 2448
93378 2292
1578828 374
569 -666
82983 -1648
67780 -1818
636 -2478


f__Nectriaceae

f__Nectriaceae
128
set f__Nectriaceae
setSize 13
pANOVA 0.0362
s.dist -0.336
p.adjustANOVA 0.161



Top enriched genes

Top 20 genes
GeneID Gene Rank
140110 -3792
5507 -3705
169388 -3524
101028 -3287
231269 -2920
117187 -2615
5518 -2513
57143 -936
948311 -380
56646 -34
5127 -32
79018 3122
5516 3734

Click HERE to show all gene set members

All member genes
GeneID Gene Rank
140110 -3792
5507 -3705
169388 -3524
101028 -3287
231269 -2920
117187 -2615
5518 -2513
57143 -936
948311 -380
56646 -34
5127 -32
79018 3122
5516 3734


f__Phyllobacteriaceae

f__Phyllobacteriaceae
38
set f__Phyllobacteriaceae
setSize 40
pANOVA 0.0589
s.dist -0.173
p.adjustANOVA 0.255



Top enriched genes

Top 20 genes
GeneID Gene Rank
207743 -4015
266294 -4013
2493670 -2988
83263 -2969
374606 -2708
278153 -2706
2493674 -2474
2493671 -2079
2493681 -2008
2599600 -1952
593909 -1921
2493676 -1905
2493680 -1874
2493672 -1787
536018 -1650
2584466 -1459
381 -1431
2493673 -1039
2108445 -1029
1620421 -917

Click HERE to show all gene set members

All member genes
GeneID Gene Rank
207743 -4015
266294 -4013
2493670 -2988
83263 -2969
374606 -2708
278153 -2706
2493674 -2474
2493671 -2079
2493681 -2008
2599600 -1952
593909 -1921
2493676 -1905
2493680 -1874
2493672 -1787
536018 -1650
2584466 -1459
381 -1431
2493673 -1039
2108445 -1029
1620421 -917
2493675 -832
2493677 -784
1670800 -783
1756988 -737
71433 -459
244596 -293
2493669 -173
266779 -10
28104 241
2493668 262
2493679 281
2493678 404
1852022 764
1295366 1125
2082387 2693
2066070 2704
39645 2853
472175 3154
1867719 3236
263506 4178


f__Propionibacteriaceae

f__Propionibacteriaceae
92
set f__Propionibacteriaceae
setSize 23
pANOVA 0.0662
s.dist 0.221
p.adjustANOVA 0.274



Top enriched genes

Top 20 genes
GeneID Gene Rank
33010 3728
1748 3274
556499 3187
630515 3089
29405 2880
399497 2165
675864 1977
2662261 1894
2057246 1228
2672569 1201
2596828 1170
1610493 1084
1749 937
1747 408
1909732 208
2161816 -261
1332264 -280
119981 -283
1871034 -496
33011 -551

Click HERE to show all gene set members

All member genes
GeneID Gene Rank
33010 3728
1748 3274
556499 3187
630515 3089
29405 2880
399497 2165
675864 1977
2662261 1894
2057246 1228
2672569 1201
2596828 1170
1610493 1084
1749 937
1747 408
1909732 208
2161816 -261
1332264 -280
119981 -283
1871034 -496
33011 -551
1750 -659
1744 -799
671223 -2372


f__Acetobacteraceae

f__Acetobacteraceae
48
set f__Acetobacteraceae
setSize 42
pANOVA 0.0669
s.dist -0.164
p.adjustANOVA 0.274



Top enriched genes

Top 20 genes
GeneID Gene Rank
438 -3636
28448 -3432
2558360 -3344
1293412 -3119
2592655 -2951
1177712 -2935
207340 -2826
320497 -2739
91915 -2605
217070 -2512
33995 -2337
1909293 -2207
364410 -2192
2676441 -2130
62140 -1862
94 -1802
257438 -1755
265960 -1694
33996 -1248
146474 -1128

Click HERE to show all gene set members

All member genes
GeneID Gene Rank
438 -3636
28448 -3432
2558360 -3344
1293412 -3119
2592655 -2951
1177712 -2935
207340 -2826
320497 -2739
91915 -2605
217070 -2512
33995 -2337
1909293 -2207
364410 -2192
2676441 -2130
62140 -1862
94 -1802
257438 -1755
265960 -1694
33996 -1248
146474 -1128
2018065 -626
442 -546
2558175 -434
524 -364
481146 -140
65958 36
2478912 78
2558361 163
318683 193
265959 402
153496 643
1969806 737
446692 974
104102 1146
2697033 1200
257708 1413
431306 2333
661191 2408
435 3010
1076596 3050
436 3829
204525 4181


f__Podoviridae

f__Podoviridae
155
set f__Podoviridae
setSize 37
pANOVA 0.0699
s.dist -0.172
p.adjustANOVA 0.279



Top enriched genes

Top 20 genes
GeneID Gene Rank
2560692 -4009
1450749 -3948
347327 -3936
1864623 -3730
1754209 -3556
1881392 -3410
1734382 -3286
10778 -3134
2662128 -2968
1881432 -2759
1909400 -2061
2500810 -1843
1309583 -1690
1921188 -1306
1921189 -1296
2315470 -973
1874000 -961
2023949 -954
2023950 -873
2500808 -746

Click HERE to show all gene set members

All member genes
GeneID Gene Rank
2560692 -4009
1450749 -3948
347327 -3936
1864623 -3730
1754209 -3556
1881392 -3410
1734382 -3286
10778 -3134
2662128 -2968
1881432 -2759
1909400 -2061
2500810 -1843
1309583 -1690
1921188 -1306
1921189 -1296
2315470 -973
1874000 -961
2023949 -954
2023950 -873
2500808 -746
1921187 -725
2596966 -681
1983413 -615
1874001 -542
2500809 -427
1921186 -232
1675598 372
1921185 385
616674 653
2675443 1921
2100421 2105
2023951 2892
1647458 3381
1981931 3692
1136535 3915
2026944 4070
2267655 4111


f__Rhodanobacteraceae

f__Rhodanobacteraceae
11
set f__Rhodanobacteraceae
setSize 12
pANOVA 0.0987
s.dist 0.275
p.adjustANOVA 0.384



Top enriched genes

Top 20 genes
GeneID Gene Rank
81475 3398
582702 3290
666685 3061
2021234 2968
2010829 2174
445710 2003
242606 1963
231455 676
2589080 105
1379159 -740
2501295 -2149
323415 -2215

Click HERE to show all gene set members

All member genes
GeneID Gene Rank
81475 3398
582702 3290
666685 3061
2021234 2968
2010829 2174
445710 2003
242606 1963
231455 676
2589080 105
1379159 -740
2501295 -2149
323415 -2215


f__Gallionellaceae

f__Gallionellaceae
35
set f__Gallionellaceae
setSize 10
pANOVA 0.101
s.dist 0.3
p.adjustANOVA 0.384



Top enriched genes

Top 20 genes
GeneID Gene Rank
63745 4126
1188319 4050
370405 2925
171865 2519
2600596 1634
2182327 1561
2675298 458
649841 -846
2559597 -1041
1985873 -2271

Click HERE to show all gene set members

All member genes
GeneID Gene Rank
63745 4126
1188319 4050
370405 2925
171865 2519
2600596 1634
2182327 1561
2675298 458
649841 -846
2559597 -1041
1985873 -2271


f__Clostridiaceae

f__Clostridiaceae
69
set f__Clostridiaceae
setSize 77
pANOVA 0.127
s.dist 0.101
p.adjustANOVA 0.458



Top enriched genes

Top 20 genes
GeneID Gene Rank
105330 4163
1559 3808
1506 3600
1502 3568
1923880 3533
182773 3481
1561 3414
46867 3383
2086584 3338
1504 3232
1530 3186
1553 3000
137838 2653
1548 2544
36745 2497
1533 2260
169679 2239
1508644 2042
2212991 1944
986802 1937

Click HERE to show all gene set members

All member genes
GeneID Gene Rank
105330 4163
1559 3808
1506 3600
1502 3568
1923880 3533
182773 3481
1561 3414
46867 3383
2086584 3338
1504 3232
1530 3186
1553 3000
137838 2653
1548 2544
36745 2497
1533 2260
169679 2239
1508644 2042
2212991 1944
986802 1937
1520 1922
394958 1714
49118 1703
2184719 1667
84031 1546
1513 1401
268365 1340
1702238 1262
1041504 1109
1542 1104
1491 1041
2507159 978
461876 870
332101 731
154046 710
641107 674
1493 631
1424294 544
1519 345
84022 318
208226 277
84023 259
2576307 187
1534 158
2483110 153
2587161 53
1216932 -106
217159 -121
1498 -156
2320868 -164
2068654 -166
238834 -304
1042156 -340
1488 -341
1509 -358
2082193 -534
223919 -646
1538 -685
2599308 -705
59620 -729
755731 -845
878264 -1020
1501 -1183
29341 -1495
1550 -1541
29369 -1603
1492 -1857
1962263 -2001
1494 -2352
36839 -2395
1497 -2440
1198714 -2945
1917970 -3146
1898204 -3347
1529 -3392
761964 -3800
61425 -4024


f__Aspergillaceae

f__Aspergillaceae
130
set f__Aspergillaceae
setSize 45
pANOVA 0.129
s.dist 0.131
p.adjustANOVA 0.458



Top enriched genes

Top 20 genes
GeneID Gene Rank
89489 4174
487661 4080
5062 3903
162425 3902
41058 3756
1108849 3750
41067 3705
1341132 3461
209559 3425
1810919 3291
41413 3227
319627 3001
27334 2908
1340029 2685
319630 2462
746128 2353
288669 2307
5061 2262
34381 2169
36630 1950

Click HERE to show all gene set members

All member genes
GeneID Gene Rank
89489 4174
487661 4080
5062 3903
162425 3902
41058 3756
1108849 3750
41067 3705
1341132 3461
209559 3425
1810919 3291
41413 3227
319627 3001
27334 2908
1340029 2685
319630 2462
746128 2353
288669 2307
5061 2262
34381 2169
36630 1950
61420 1676
1506151 1571
1191711 578
301854 532
33178 339
109264 244
319631 -117
979771 -381
306088 -1007
41047 -1086
246267 -1156
41061 -1167
36651 -1200
319626 -1671
132259 -1975
5057 -2208
51019 -2361
41063 -2623
1196635 -2925
5053 -3025
41068 -3029
1835702 -3113
340412 -3277
5059 -3735
446911 -3919


f__Piscirickettsiaceae

f__Piscirickettsiaceae
23
set f__Piscirickettsiaceae
setSize 11
pANOVA 0.129
s.dist 0.265
p.adjustANOVA 0.458



Top enriched genes

Top 20 genes
GeneID Gene Rank
754476 3806
92245 3255
2211106 3021
265883 2938
2580412 2694
39765 1530
754477 1009
2267253 -270
147268 -507
1803865 -1825
1238 -2814

Click HERE to show all gene set members

All member genes
GeneID Gene Rank
754476 3806
92245 3255
2211106 3021
265883 2938
2580412 2694
39765 1530
754477 1009
2267253 -270
147268 -507
1803865 -1825
1238 -2814


f__Solanaceae

f__Solanaceae
138
set f__Solanaceae
setSize 11
pANOVA 0.135
s.dist -0.261
p.adjustANOVA 0.464



Top enriched genes

Top 20 genes
GeneID Gene Rank
4113 -3562
4097 -3082
4081 -3055
49451 -2996
4072 -1538
4096 -1468
35889 -1221
28526 -1137
50273 1669
4100 2173
4098 3325

Click HERE to show all gene set members

All member genes
GeneID Gene Rank
4113 -3562
4097 -3082
4081 -3055
49451 -2996
4072 -1538
4096 -1468
35889 -1221
28526 -1137
50273 1669
4100 2173
4098 3325


f__Staphylococcaceae

f__Staphylococcaceae
62
set f__Staphylococcaceae
setSize 48
pANOVA 0.136
s.dist 0.124
p.adjustANOVA 0.464



Top enriched genes

Top 20 genes
GeneID Gene Rank
46126 3911
985002 3714
29384 3563
29380 3385
1295 3257
29388 3228
29382 3150
214473 2990
1898474 2933
70258 2926
1290 2899
45972 2782
1286 2707
1654388 2578
29379 2525
1294 2510
1296 2265
61015 2059
53344 1624
2025492 1583

Click HERE to show all gene set members

All member genes
GeneID Gene Rank
46126 3911
985002 3714
29384 3563
29380 3385
1295 3257
29388 3228
29382 3150
214473 2990
1898474 2933
70258 2926
1290 2899
45972 2782
1286 2707
1654388 2578
29379 2525
1294 2510
1296 2265
61015 2059
53344 1624
2025492 1583
28035 1481
2044912 1469
985762 1436
308354 774
1461582 720
1282 719
29385 608
170573 362
246432 169
155085 -5
1281 -135
407035 -307
150056 -713
1288 -809
643214 -902
1437774 -1597
69966 -1617
283734 -1957
1280 -2100
1849491 -2209
42858 -2379
1283 -2405
70255 -2699
1855823 -3081
46127 -3129
29378 -3253
1292 -3353
1284 -3408


f__Chitinophagaceae

f__Chitinophagaceae
113
set f__Chitinophagaceae
setSize 21
pANOVA 0.141
s.dist 0.186
p.adjustANOVA 0.469



Top enriched genes

Top 20 genes
GeneID Gene Rank
1813871 2928
661481 2820
354356 2659
2029983 2533
477680 2271
661488 2100
2604421 2090
1850526 1841
2203219 1610
1004 1510
1176587 1360
2545455 1319
2315862 1073
2033437 781
79329 333
446683 -338
2676868 -609
2502779 -947
1492898 -1519
496057 -2559

Click HERE to show all gene set members

All member genes
GeneID Gene Rank
1813871 2928
661481 2820
354356 2659
2029983 2533
477680 2271
661488 2100
2604421 2090
1850526 1841
2203219 1610
1004 1510
1176587 1360
2545455 1319
2315862 1073
2033437 781
79329 333
446683 -338
2676868 -609
2502779 -947
1492898 -1519
496057 -2559
2341117 -3560


f__Halomonadaceae

f__Halomonadaceae
16
set f__Halomonadaceae
setSize 49
pANOVA 0.146
s.dist 0.12
p.adjustANOVA 0.477



Top enriched genes

Top 20 genes
GeneID Gene Rank
357658 4180
2562282 3957
1346287 3894
29570 3882
1504981 3875
91844 3730
2497861 3557
664683 3285
1761789 2851
1971364 2832
29571 2589
2576841 2414
2587849 2370
390919 2245
115553 2112
2014541 2093
2306583 2018
1118153 1913
28258 1861
44935 1524

Click HERE to show all gene set members

All member genes
GeneID Gene Rank
357658 4180
2562282 3957
1346287 3894
29570 3882
1504981 3875
91844 3730
2497861 3557
664683 3285
1761789 2851
1971364 2832
29571 2589
2576841 2414
2587849 2370
390919 2245
115553 2112
2014541 2093
2306583 2018
1118153 1913
28258 1861
44935 1524
213554 1238
2136172 1188
2661553 1186
115555 1137
157779 867
1495769 338
158080 264
114186 81
1055101 15
2587844 -40
1897729 -139
2686360 -278
1883414 -450
147248 -728
698828 -876
507626 -909
657387 -978
1609967 -999
115561 -1234
475662 -1691
1771309 -2345
376489 -2433
2746 -2641
1883416 -2717
1178482 -2735
1666906 -3116
272774 -3288
33074 -3858
349789 -4025


f__Blattabacteriaceae

f__Blattabacteriaceae
107
set f__Blattabacteriaceae
setSize 10
pANOVA 0.152
s.dist 0.262
p.adjustANOVA 0.485



Top enriched genes

Top 20 genes
GeneID Gene Rank
1316444 4109
1415657 3737
164514 3214
1653831 3077
39768 2699
624186 2442
336810 -146
1186051 -1471
298656 -3011
164516 -3089

Click HERE to show all gene set members

All member genes
GeneID Gene Rank
1316444 4109
1415657 3737
164514 3214
1653831 3077
39768 2699
624186 2442
336810 -146
1186051 -1471
298656 -3011
164516 -3089


Here is the session info with all the versions of packages used.

sessionInfo()
## R version 4.1.0 (2021-05-18)
## Platform: x86_64-pc-linux-gnu (64-bit)
## Running under: Ubuntu 20.04.2 LTS
## 
## Matrix products: default
## BLAS:   /usr/lib/x86_64-linux-gnu/blas/libblas.so.3.9.0
## LAPACK: /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3.9.0
## 
## locale:
##  [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C              
##  [3] LC_TIME=en_US.UTF-8        LC_COLLATE=en_US.UTF-8    
##  [5] LC_MONETARY=en_US.UTF-8    LC_MESSAGES=en_US.UTF-8   
##  [7] LC_PAPER=en_US.UTF-8       LC_NAME=C                 
##  [9] LC_ADDRESS=C               LC_TELEPHONE=C            
## [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C       
## 
## attached base packages:
## [1] parallel  stats4    stats     graphics  grDevices utils     datasets 
## [8] methods   base     
## 
## other attached packages:
##  [1] pkgload_1.2.1               GGally_2.1.2               
##  [3] ggplot2_3.3.5               reshape2_1.4.4             
##  [5] beeswarm_0.4.0              gplots_3.1.1               
##  [7] gtools_3.9.2                tibble_3.1.2               
##  [9] dplyr_1.0.7                 echarts4r_0.4.1            
## [11] mitch_1.4.0                 DESeq2_1.32.0              
## [13] SummarizedExperiment_1.22.0 Biobase_2.52.0             
## [15] MatrixGenerics_1.4.0        matrixStats_0.59.0         
## [17] GenomicRanges_1.44.0        GenomeInfoDb_1.28.1        
## [19] IRanges_2.26.0              S4Vectors_0.30.0           
## [21] BiocGenerics_0.38.0        
## 
## loaded via a namespace (and not attached):
##  [1] bitops_1.0-7           bit64_4.0.5            RColorBrewer_1.1-2    
##  [4] httr_1.4.2             rprojroot_2.0.2        tools_4.1.0           
##  [7] bslib_0.2.5.1          utf8_1.2.1             R6_2.5.0              
## [10] KernSmooth_2.23-20     DBI_1.1.1              colorspace_2.0-2      
## [13] withr_2.4.2            tidyselect_1.1.1       gridExtra_2.3         
## [16] bit_4.0.4              compiler_4.1.0         desc_1.3.0            
## [19] DelayedArray_0.18.0    sass_0.4.0             caTools_1.18.2        
## [22] scales_1.1.1           genefilter_1.74.0      stringr_1.4.0         
## [25] digest_0.6.27          rmarkdown_2.9          XVector_0.32.0        
## [28] pkgconfig_2.0.3        htmltools_0.5.1.1      highr_0.9             
## [31] fastmap_1.1.0          htmlwidgets_1.5.3      rlang_0.4.11          
## [34] rstudioapi_0.13        RSQLite_2.2.7          shiny_1.6.0           
## [37] jquerylib_0.1.4        generics_0.1.0         jsonlite_1.7.2        
## [40] BiocParallel_1.26.1    RCurl_1.98-1.3         magrittr_2.0.1        
## [43] GenomeInfoDbData_1.2.6 Matrix_1.3-4           Rcpp_1.0.7            
## [46] munsell_0.5.0          fansi_0.5.0            lifecycle_1.0.0       
## [49] stringi_1.7.3          yaml_2.2.1             MASS_7.3-54           
## [52] zlibbioc_1.38.0        plyr_1.8.6             grid_4.1.0            
## [55] blob_1.2.1             promises_1.2.0.1       crayon_1.4.1          
## [58] lattice_0.20-44        Biostrings_2.60.1      splines_4.1.0         
## [61] annotate_1.70.0        KEGGREST_1.32.0        locfit_1.5-9.4        
## [64] knitr_1.33             pillar_1.6.1           geneplotter_1.70.0    
## [67] XML_3.99-0.6           glue_1.4.2             evaluate_0.14         
## [70] png_0.1-7              vctrs_0.3.8            httpuv_1.6.1          
## [73] testthat_3.0.4         gtable_0.3.0           purrr_0.3.4           
## [76] reshape_0.8.8          assertthat_0.2.1       cachem_1.0.5          
## [79] xfun_0.24              mime_0.11              xtable_1.8-4          
## [82] later_1.2.0            survival_3.2-11        AnnotationDbi_1.54.1  
## [85] memoise_2.0.0          ellipsis_0.3.2

END of report