Mitch Report

date generated: 2020-11-05

Background

Mitch performs unidimensional and multidimensional gene set enrichment analysis. The concept behind this dates to work by Cox and Mann (https://doi.org/10.1186/1471-2105-13-S16-S12). This implementation is suited to R based workflows of multi-omics datasets. This software was developed by Antony Kaspi and Mark Ziemann. Learn more about Mitch at the website: https://github.com/markziemann/Mitch

Input profiles

Here is the first few lines of the input profile.

##                      x
## 1MMP        -2.1178072
## 2-Cys        0.2738577
## 2A6         -4.9615859
## 2MMP        -0.1068724
## 3AT1        -2.4291794
## 3BETAHSD/D1  0.2616148

Here are some metrics about the input data profile:

Profile metrics
	Profile metrics
num_genesets	959
num_genes_in_profile	20627
duplicated_genes_present	0
num_profile_genes_in_sets	20042
num_profile_genes_not_in_sets	585

Here is a plot of the input profiles. Note the dynamic ranges.

Here is the contour plot of the profile including all detected genes.

Input genesets

Here are some metrics about the gene sets used: GMT file of genesets: ../ref/Ath_AGI_LOCUS_TAIR10_Aug2012.txt.gmt

Gene sets metrics
	Gene sets metrics
num_genesets	959
num_genesets_excluded	697
num_genesets_included	262

Differential pathway expression

Interactive enrichment scatterplot

Significance is calculated by -log10(p-value). All points shown are FDR<0.05.

Significance is calculated by -log10(p-value). Top N sets shown irrespective of FDR.

Results table

Top N= 50 gene sets

set	setSize	pANOVA	s.dist	p.adjustANOVA
RNA REGULATION OF TRANSCRIPTION CCAAT BOX BINDING FACTOR FAMILY, HAP2	10	1.21e-05	-0.799	1.87e-04
CELL WALL CELL WALL PROTEINS HRGP	14	2.28e-07	-0.799	6.38e-06
REDOX THIOREDOXIN PDIL	13	4.03e-05	0.658	4.80e-04
CELL WALL CELL WALL PROTEINS LRR	16	9.78e-06	-0.638	1.60e-04
TRANSPORT MAJOR INTRINSIC PROTEINS PIP	13	2.44e-04	0.588	1.83e-03
NOT ASSIGNED NO ONTOLOGY FORMIN HOMOLOGY 2 DOMAIN-CONTAINING PROTEIN	16	4.73e-05	-0.587	5.39e-04
NOT ASSIGNED NO ONTOLOGY PROLINE RICH FAMILY	37	9.00e-10	-0.582	7.86e-08
DEVELOPMENT LATE EMBRYOGENESIS ABUNDANT	18	1.97e-05	0.581	2.71e-04
RNA REGULATION OF TRANSCRIPTION ARF, AUXIN RESPONSE FACTOR FAMILY	16	2.37e-04	-0.531	1.83e-03
RNA REGULATION OF TRANSCRIPTION NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP	13	9.50e-04	-0.529	5.66e-03
PS LIGHTREACTION PHOTOSYSTEM II LHC-II	14	6.31e-04	-0.528	4.06e-03
RNA REGULATION OF TRANSCRIPTION TRIHELIX, TRIPLE-HELIX TRANSCRIPTION FACTOR FAMILY	30	7.51e-07	-0.522	1.79e-05
RNA REGULATION OF TRANSCRIPTION PWWP DOMAIN PROTEIN	11	3.43e-03	-0.509	1.67e-02
PROTEIN TARGETING SECRETORY PATHWAY ER	14	1.12e-03	0.503	6.50e-03
SIGNALLING RECEPTOR KINASES WHEAT LRK10 LIKE	12	2.86e-03	-0.497	1.44e-02
STRESS BIOTIC PR-PROTEINS PLANT DEFENSINS	15	9.14e-04	0.494	5.62e-03
SECONDARY METABOLISM SIMPLE PHENOLS	16	6.35e-04	-0.493	4.06e-03
PROTEIN DEGRADATION UBIQUITIN PROTEASOM	60	4.95e-11	0.490	6.48e-09
HORMONE METABOLISM GIBBERELIN INDUCED-REGULATED-RESPONSIVE-ACTIVATED	12	3.91e-03	0.481	1.86e-02
SIGNALLING RECEPTOR KINASES PROLINE EXTENSIN LIKE	15	1.41e-03	-0.476	7.84e-03
PROTEIN DEGRADATION UBIQUITIN E3 BTB/POZ CULLIN3 BTB/POZ	10	1.12e-02	0.463	4.12e-02
RNA REGULATION OF TRANSCRIPTION MYB-RELATED TRANSCRIPTION FACTOR FAMILY	42	2.44e-07	-0.460	6.38e-06
SIGNALLING 14-3-3 PROTEINS	11	8.52e-03	0.458	3.54e-02
SIGNALLING RECEPTOR KINASES LEUCINE RICH REPEAT VI	10	1.52e-02	-0.443	5.16e-02
PROTEIN ASSEMBLY AND COFACTOR LIGATION	23	2.67e-04	0.439	1.91e-03
NOT ASSIGNED NO ONTOLOGY GLYCINE RICH PROTEINS	52	4.51e-08	-0.438	1.48e-06
PROTEIN SYNTHESIS ELONGATION	29	7.64e-05	0.424	8.00e-04
DNA SYNTHESIS/CHROMATIN STRUCTURE HISTONE CORE H2A	13	9.48e-03	0.416	3.85e-02
PROTEIN SYNTHESIS RIBOSOME BIOGENESIS PRE-RRNA PROCESSING AND MODIFICATIONS SNORNPS	13	1.07e-02	0.409	4.07e-02
RNA REGULATION OF TRANSCRIPTION G2-LIKE TRANSCRIPTION FACTOR FAMILY, GARP	37	2.07e-05	-0.404	2.72e-04
PS LIGHTREACTION NADH DH	12	1.54e-02	0.404	5.18e-02
PROTEIN TARGETING MITOCHONDRIA	31	1.55e-04	0.392	1.36e-03
RNA REGULATION OF TRANSCRIPTION C2C2(ZN) DOF ZINC FINGER FAMILY	31	2.11e-04	-0.385	1.73e-03
MITOCHONDRIAL ELECTRON TRANSPORT / ATP SYNTHESIS F1-ATPASE	20	3.03e-03	0.383	1.50e-02
MINOR CHO METABOLISM CALLOSE	13	1.69e-02	-0.383	5.59e-02
RNA REGULATION OF TRANSCRIPTION CHROMATIN REMODELING FACTORS	35	1.08e-04	-0.378	1.05e-03
PROTEIN SYNTHESIS RIBOSOMAL PROTEIN EUKARYOTIC 60S SUBUNIT L34	10	4.15e-02	0.372	1.16e-01
LIPID METABOLISM PHOSPHOLIPID SYNTHESIS	16	1.02e-02	0.371	3.95e-02
SIGNALLING RECEPTOR KINASES DUF 26	39	1.00e-04	-0.360	1.01e-03
TRANSPORT CALCIUM	21	4.70e-03	0.356	2.16e-02
TRANSPORT NUCLEOTIDES	19	7.40e-03	-0.355	3.18e-02
RNA REGULATION OF TRANSCRIPTION MADS BOX TRANSCRIPTION FACTOR FAMILY	28	1.22e-03	-0.353	6.95e-03
RNA REGULATION OF TRANSCRIPTION GLOBAL TRANSCRIPTION FACTOR GROUP	13	2.78e-02	-0.352	8.28e-02
SIGNALLING PHOSPHINOSITIDES PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE	18	9.84e-03	-0.351	3.85e-02
NOT ASSIGNED NO ONTOLOGY AGENET DOMAIN-CONTAINING PROTEIN	16	1.52e-02	-0.351	5.16e-02
MITOCHONDRIAL ELECTRON TRANSPORT / ATP SYNTHESIS NADH-DH LOCALISATION NOT CLEAR	33	4.93e-04	0.350	3.31e-03
RNA REGULATION OF TRANSCRIPTION WRKY DOMAIN TRANSCRIPTION FACTOR FAMILY	62	4.82e-06	-0.336	8.42e-05
RNA REGULATION OF TRANSCRIPTION HB,HOMEOBOX TRANSCRIPTION FACTOR FAMILY	67	2.19e-06	-0.334	4.41e-05
RNA REGULATION OF TRANSCRIPTION PHD FINGER TRANSCRIPTION FACTOR	10	7.19e-02	-0.329	1.79e-01
RNA REGULATION OF TRANSCRIPTION C2C2(ZN) CO-LIKE, CONSTANS-LIKE ZINC FINGER FAMILY	24	5.64e-03	-0.326	2.53e-02

Results (complete table)

Click HERE to show results for all gene sets

Complete results
set	setSize	pANOVA	s.dist	p.adjustANOVA
RNA REGULATION OF TRANSCRIPTION CCAAT BOX BINDING FACTOR FAMILY, HAP2	10	1.21e-05	-0.799000	1.87e-04
CELL WALL CELL WALL PROTEINS HRGP	14	2.28e-07	-0.799000	6.38e-06
REDOX THIOREDOXIN PDIL	13	4.03e-05	0.658000	4.80e-04
CELL WALL CELL WALL PROTEINS LRR	16	9.78e-06	-0.638000	1.60e-04
TRANSPORT MAJOR INTRINSIC PROTEINS PIP	13	2.44e-04	0.588000	1.83e-03
NOT ASSIGNED NO ONTOLOGY FORMIN HOMOLOGY 2 DOMAIN-CONTAINING PROTEIN	16	4.73e-05	-0.587000	5.39e-04
NOT ASSIGNED NO ONTOLOGY PROLINE RICH FAMILY	37	9.00e-10	-0.582000	7.86e-08
DEVELOPMENT LATE EMBRYOGENESIS ABUNDANT	18	1.97e-05	0.581000	2.71e-04
RNA REGULATION OF TRANSCRIPTION ARF, AUXIN RESPONSE FACTOR FAMILY	16	2.37e-04	-0.531000	1.83e-03
RNA REGULATION OF TRANSCRIPTION NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP	13	9.50e-04	-0.529000	5.66e-03
PS LIGHTREACTION PHOTOSYSTEM II LHC-II	14	6.31e-04	-0.528000	4.06e-03
RNA REGULATION OF TRANSCRIPTION TRIHELIX, TRIPLE-HELIX TRANSCRIPTION FACTOR FAMILY	30	7.51e-07	-0.522000	1.79e-05
RNA REGULATION OF TRANSCRIPTION PWWP DOMAIN PROTEIN	11	3.43e-03	-0.509000	1.67e-02
PROTEIN TARGETING SECRETORY PATHWAY ER	14	1.12e-03	0.503000	6.50e-03
SIGNALLING RECEPTOR KINASES WHEAT LRK10 LIKE	12	2.86e-03	-0.497000	1.44e-02
STRESS BIOTIC PR-PROTEINS PLANT DEFENSINS	15	9.14e-04	0.494000	5.62e-03
SECONDARY METABOLISM SIMPLE PHENOLS	16	6.35e-04	-0.493000	4.06e-03
PROTEIN DEGRADATION UBIQUITIN PROTEASOM	60	4.95e-11	0.490000	6.48e-09
HORMONE METABOLISM GIBBERELIN INDUCED-REGULATED-RESPONSIVE-ACTIVATED	12	3.91e-03	0.481000	1.86e-02
SIGNALLING RECEPTOR KINASES PROLINE EXTENSIN LIKE	15	1.41e-03	-0.476000	7.84e-03
PROTEIN DEGRADATION UBIQUITIN E3 BTB/POZ CULLIN3 BTB/POZ	10	1.12e-02	0.463000	4.12e-02
RNA REGULATION OF TRANSCRIPTION MYB-RELATED TRANSCRIPTION FACTOR FAMILY	42	2.44e-07	-0.460000	6.38e-06
SIGNALLING 14-3-3 PROTEINS	11	8.52e-03	0.458000	3.54e-02
SIGNALLING RECEPTOR KINASES LEUCINE RICH REPEAT VI	10	1.52e-02	-0.443000	5.16e-02
PROTEIN ASSEMBLY AND COFACTOR LIGATION	23	2.67e-04	0.439000	1.91e-03
NOT ASSIGNED NO ONTOLOGY GLYCINE RICH PROTEINS	52	4.51e-08	-0.438000	1.48e-06
PROTEIN SYNTHESIS ELONGATION	29	7.64e-05	0.424000	8.00e-04
DNA SYNTHESIS/CHROMATIN STRUCTURE HISTONE CORE H2A	13	9.48e-03	0.416000	3.85e-02
PROTEIN SYNTHESIS RIBOSOME BIOGENESIS PRE-RRNA PROCESSING AND MODIFICATIONS SNORNPS	13	1.07e-02	0.409000	4.07e-02
RNA REGULATION OF TRANSCRIPTION G2-LIKE TRANSCRIPTION FACTOR FAMILY, GARP	37	2.07e-05	-0.404000	2.72e-04
PS LIGHTREACTION NADH DH	12	1.54e-02	0.404000	5.18e-02
PROTEIN TARGETING MITOCHONDRIA	31	1.55e-04	0.392000	1.36e-03
RNA REGULATION OF TRANSCRIPTION C2C2(ZN) DOF ZINC FINGER FAMILY	31	2.11e-04	-0.385000	1.73e-03
MITOCHONDRIAL ELECTRON TRANSPORT / ATP SYNTHESIS F1-ATPASE	20	3.03e-03	0.383000	1.50e-02
MINOR CHO METABOLISM CALLOSE	13	1.69e-02	-0.383000	5.59e-02
RNA REGULATION OF TRANSCRIPTION CHROMATIN REMODELING FACTORS	35	1.08e-04	-0.378000	1.05e-03
PROTEIN SYNTHESIS RIBOSOMAL PROTEIN EUKARYOTIC 60S SUBUNIT L34	10	4.15e-02	0.372000	1.16e-01
LIPID METABOLISM PHOSPHOLIPID SYNTHESIS	16	1.02e-02	0.371000	3.95e-02
SIGNALLING RECEPTOR KINASES DUF 26	39	1.00e-04	-0.360000	1.01e-03
TRANSPORT CALCIUM	21	4.70e-03	0.356000	2.16e-02
TRANSPORT NUCLEOTIDES	19	7.40e-03	-0.355000	3.18e-02
RNA REGULATION OF TRANSCRIPTION MADS BOX TRANSCRIPTION FACTOR FAMILY	28	1.22e-03	-0.353000	6.95e-03
RNA REGULATION OF TRANSCRIPTION GLOBAL TRANSCRIPTION FACTOR GROUP	13	2.78e-02	-0.352000	8.28e-02
SIGNALLING PHOSPHINOSITIDES PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE	18	9.84e-03	-0.351000	3.85e-02
NOT ASSIGNED NO ONTOLOGY AGENET DOMAIN-CONTAINING PROTEIN	16	1.52e-02	-0.351000	5.16e-02
MITOCHONDRIAL ELECTRON TRANSPORT / ATP SYNTHESIS NADH-DH LOCALISATION NOT CLEAR	33	4.93e-04	0.350000	3.31e-03
RNA REGULATION OF TRANSCRIPTION WRKY DOMAIN TRANSCRIPTION FACTOR FAMILY	62	4.82e-06	-0.336000	8.42e-05
RNA REGULATION OF TRANSCRIPTION HB,HOMEOBOX TRANSCRIPTION FACTOR FAMILY	67	2.19e-06	-0.334000	4.41e-05
RNA REGULATION OF TRANSCRIPTION PHD FINGER TRANSCRIPTION FACTOR	10	7.19e-02	-0.329000	1.79e-01
RNA REGULATION OF TRANSCRIPTION C2C2(ZN) CO-LIKE, CONSTANS-LIKE ZINC FINGER FAMILY	24	5.64e-03	-0.326000	2.53e-02
DEVELOPMENT SQUAMOSA PROMOTER BINDING LIKE (SPL)	17	2.01e-02	-0.326000	6.40e-02
PROTEIN SYNTHESIS RIBOSOME BIOGENESIS PRE-RRNA PROCESSING AND MODIFICATIONS METHYLOTRANSFERASES	16	2.89e-02	0.315000	8.41e-02
RNA REGULATION OF TRANSCRIPTION TCP TRANSCRIPTION FACTOR FAMILY	16	3.28e-02	-0.308000	9.24e-02
RNA REGULATION OF TRANSCRIPTION HISTONE ACETYLTRANSFERASES	18	2.52e-02	-0.305000	7.86e-02
STRESS BIOTIC SIGNALLING	13	5.77e-02	-0.304000	1.56e-01
PROTEIN DEGRADATION AUTOPHAGY	22	1.42e-02	0.302000	5.02e-02
SIGNALLING RECEPTOR KINASES LEUCINE RICH REPEAT X	12	7.07e-02	0.301000	1.78e-01
STRESS ABIOTIC	21	1.74e-02	0.300000	5.68e-02
CELL WALL MODIFICATION	55	1.34e-04	0.298000	1.26e-03
PS LIGHTREACTION PHOTOSYSTEM I PSI POLYPEPTIDE SUBUNITS	18	3.11e-02	-0.293000	8.87e-02
PROTEIN POSTRANSLATIONAL MODIFICATION KINASE RECEPTOR LIKE CYTOPLASMATIC KINASE IX	11	9.35e-02	-0.292000	2.23e-01
NOT ASSIGNED NO ONTOLOGY HYDROXYPROLINE RICH PROTEINS	52	2.70e-04	-0.292000	1.91e-03
SIGNALLING RECEPTOR KINASES LEUCINE RICH REPEAT VIII VIII-2	14	5.86e-02	-0.292000	1.57e-01
TCA / ORG TRANSFORMATION CARBONIC ANHYDRASES	10	1.10e-01	0.292000	2.51e-01
PROTEIN FOLDING	63	7.05e-05	0.290000	7.70e-04
PROTEIN POSTRANSLATIONAL MODIFICATION KINASE	22	2.03e-02	-0.286000	6.40e-02
SECONDARY METABOLISM ISOPRENOIDS NON-MEVALONATE PATHWAY GERANYLGERANYL PYROPHOSPHATE SYNTHASE	10	1.29e-01	0.278000	2.74e-01
SIGNALLING RECEPTOR KINASES WALL ASSOCIATED KINASE	22	2.67e-02	-0.273000	8.15e-02
PROTEIN SYNTHESIS INITIATION	77	3.87e-05	0.271000	4.80e-04
SIGNALLING LIGHT	89	1.42e-05	-0.266000	2.06e-04
RNA REGULATION OF TRANSCRIPTION BZIP TRANSCRIPTION FACTOR FAMILY	60	4.19e-04	-0.263000	2.89e-03
SIGNALLING RECEPTOR KINASES LEUCINE RICH REPEAT III	40	4.35e-03	-0.261000	2.03e-02
PROTEIN DEGRADATION ASPARTATE PROTEASE	31	1.36e-02	0.256000	4.92e-02
RNA REGULATION OF TRANSCRIPTION MYB DOMAIN TRANSCRIPTION FACTOR FAMILY	121	1.22e-06	-0.255000	2.66e-05
STRESS BIOTIC PR-PROTEINS	172	8.97e-09	-0.254000	3.92e-07
MITOCHONDRIAL ELECTRON TRANSPORT / ATP SYNTHESIS CYTOCHROME C OXIDASE	25	2.98e-02	0.251000	8.57e-02
SIGNALLING RECEPTOR KINASES MISC	74	1.90e-04	-0.251000	1.61e-03
NOT ASSIGNED NO ONTOLOGY EPSIN N-TERMINAL HOMOLOGY (ENTH) DOMAIN-CONTAINING PROTEIN	19	6.23e-02	-0.247000	1.65e-01
PROTEIN POSTRANSLATIONAL MODIFICATION KINASE RECEPTOR LIKE CYTOPLASMATIC KINASE VIII	11	1.57e-01	0.247000	3.13e-01
MISC GLUTATHIONE S TRANSFERASES	53	2.03e-03	0.245000	1.08e-02
MISC GLUCO-, GALACTO- AND MANNOSIDASES ENDOGLUCANASE	13	1.33e-01	-0.241000	2.79e-01
MINOR CHO METABOLISM OTHERS	39	9.74e-03	0.239000	3.85e-02
PROTEIN DEGRADATION UBIQUITIN UBIQUITIN	24	4.32e-02	0.238000	1.19e-01
DNA SYNTHESIS/CHROMATIN STRUCTURE	204	5.51e-09	-0.237000	2.89e-07
PROTEIN POSTRANSLATIONAL MODIFICATION KINASE RECEPTOR LIKE CYTOPLASMATIC KINASE VI	14	1.27e-01	-0.235000	2.74e-01
MISC GLUCO-, GALACTO- AND MANNOSIDASES BETA-GALACTOSIDASE	13	1.52e-01	-0.230000	3.09e-01
TRANSPORT METABOLITE TRANSPORTERS AT THE MITOCHONDRIAL MEMBRANE	61	1.94e-03	0.229000	1.06e-02
MISC ACID AND OTHER PHOSPHATASES	59	2.35e-03	0.229000	1.23e-02
RNA PROCESSING SPLICING	58	2.67e-03	-0.228000	1.37e-02
NOT ASSIGNED NO ONTOLOGY ARMADILLO/BETA-CATENIN REPEAT FAMILY PROTEIN	31	2.86e-02	0.227000	8.41e-02
RNA REGULATION OF TRANSCRIPTION C2H2 ZINC FINGER FAMILY	101	1.43e-04	-0.219000	1.30e-03
DEVELOPMENT STORAGE PROTEINS	18	1.13e-01	0.216000	2.55e-01
SIGNALLING RECEPTOR KINASES LEUCINE RICH REPEAT II	13	1.80e-01	-0.215000	3.49e-01
RNA REGULATION OF TRANSCRIPTION SNF7	12	1.98e-01	-0.215000	3.73e-01
REDOX THIOREDOXIN	50	9.68e-03	0.211000	3.85e-02
MISC GCN5-RELATED N-ACETYLTRANSFERASE	25	6.83e-02	0.211000	1.76e-01
PROTEIN TARGETING PEROXISOMES	11	2.26e-01	-0.211000	4.05e-01
SIGNALLING RECEPTOR KINASES LEUCINE RICH REPEAT I	19	1.15e-01	-0.209000	2.55e-01
PROTEIN DEGRADATION UBIQUITIN E3 SCF FBOX	251	1.27e-08	0.209000	4.74e-07
RNA RNA BINDING	165	4.63e-06	-0.207000	8.42e-05
TRANSPORT SUGARS	59	6.23e-03	0.206000	2.72e-02
RNA REGULATION OF TRANSCRIPTION ARR	16	1.59e-01	0.203000	3.16e-01
STRESS BIOTIC SIGNALLING MLO-LIKE	12	2.24e-01	-0.203000	4.04e-01
METAL HANDLING	10	2.70e-01	-0.201000	4.57e-01
LIPID METABOLISM EXOTICS (STEROIDS, SQUALENE ETC) SPHINGOLIPIDS	20	1.20e-01	0.201000	2.62e-01
SIGNALLING RECEPTOR KINASES S-LOCUS GLYCOPROTEIN LIKE	23	9.71e-02	-0.200000	2.29e-01
REDOX ASCORBATE AND GLUTATHIONE ASCORBATE	16	1.67e-01	0.200000	3.28e-01
NOT ASSIGNED NO ONTOLOGY PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN	425	4.25e-12	0.196000	1.11e-09
SIGNALLING RECEPTOR KINASES LEUCINE RICH REPEAT VII	10	2.88e-01	-0.194000	4.74e-01
PROTEIN AA ACTIVATION PSEUDOURIDYLATE SYNTHASE	16	1.80e-01	0.194000	3.49e-01
RNA REGULATION OF TRANSCRIPTION BHLH,BASIC HELIX-LOOP-HELIX FAMILY	121	2.40e-04	-0.193000	1.83e-03
PROTEIN DEGRADATION UBIQUITIN E3 SCF SKP	16	1.82e-01	0.193000	3.51e-01
CELL WALL DEGRADATION MANNAN-XYLOSE-ARABINOSE-FUCOSE	16	1.87e-01	0.191000	3.57e-01
TRANSPORT SULPHATE	12	2.54e-01	-0.190000	4.37e-01
CELL ORGANISATION	344	2.78e-09	-0.187000	1.82e-07
DNA REPAIR	74	5.69e-03	-0.186000	2.53e-02
MISC BETA 1,3 GLUCAN HYDROLASES GLUCAN ENDO-1,3-BETA-GLUCOSIDASE	22	1.37e-01	-0.183000	2.85e-01
SECONDARY METABOLISM WAX	16	2.06e-01	0.183000	3.85e-01
HORMONE METABOLISM ABSCISIC ACID SYNTHESIS-DEGRADATION	10	3.25e-01	-0.180000	5.16e-01
RNA REGULATION OF TRANSCRIPTION ZF-HD	14	2.49e-01	-0.178000	4.37e-01
PROTEIN SYNTHESIS RELEASE	10	3.32e-01	0.177000	5.20e-01
HORMONE METABOLISM JASMONATE INDUCED-REGULATED-RESPONSIVE-ACTIVATED	13	2.82e-01	0.172000	4.70e-01
TRANSPORT UNSPECIFIED CATIONS	39	6.34e-02	0.172000	1.66e-01
NOT ASSIGNED NO ONTOLOGY ABC1 FAMILY PROTEIN	11	3.33e-01	0.168000	5.20e-01
SIGNALLING PHOSPHINOSITIDES	15	2.66e-01	-0.166000	4.54e-01
SECONDARY METABOLISM FLAVONOIDS DIHYDROFLAVONOLS	16	2.54e-01	-0.165000	4.37e-01
RNA REGULATION OF TRANSCRIPTION PUTATIVE TRANSCRIPTION REGULATOR	142	9.23e-04	-0.161000	5.62e-03
HORMONE METABOLISM CYTOKININ SYNTHESIS-DEGRADATION	15	2.90e-01	-0.158000	4.75e-01
BIODEGRADATION OF XENOBIOTICS LACTOYLGLUTATHIONE LYASE	11	3.67e-01	0.157000	5.50e-01
PS LIGHTREACTION PHOTOSYSTEM II PSII POLYPEPTIDE SUBUNITS	43	7.48e-02	0.157000	1.85e-01
HORMONE METABOLISM AUXIN SIGNAL TRANSDUCTION	23	1.93e-01	-0.157000	3.67e-01
PROTEIN SYNTHESIS RIBOSOME BIOGENESIS	11	3.82e-01	0.152000	5.62e-01
NOT ASSIGNED NO ONTOLOGY DC1 DOMAIN CONTAINING PROTEIN	102	8.39e-03	-0.151000	3.54e-02
CELL WALL CELL WALL PROTEINS AGPS AGP	39	1.07e-01	-0.149000	2.47e-01
HORMONE METABOLISM ABSCISIC ACID INDUCED-REGULATED-RESPONSIVE-ACTIVATED	22	2.27e-01	0.149000	4.05e-01
LIPID METABOLISM LIPID DEGRADATION LYSOPHOSPHOLIPASES PHOSPHOLIPASE D	12	3.82e-01	-0.146000	5.62e-01
TRANSPORT CYCLIC NUCLEOTIDE OR CALCIUM REGULATED CHANNELS	16	3.20e-01	-0.144000	5.14e-01
SIGNALLING RECEPTOR KINASES CATHARANTHUS ROSEUS-LIKE RLK1	14	3.55e-01	-0.143000	5.38e-01
SIGNALLING RECEPTOR KINASES LEGUME-LECTIN	15	3.40e-01	0.142000	5.26e-01
PROTEIN POSTRANSLATIONAL MODIFICATION KINASE RECEPTOR LIKE CYTOPLASMATIC KINASE VII	41	1.16e-01	-0.142000	2.55e-01
CO-FACTOR AND VITAMINE METABOLISM	15	3.46e-01	0.141000	5.33e-01
MISC MYROSINASES-LECTIN-JACALIN	46	9.91e-02	-0.141000	2.32e-01
PROTEIN TARGETING CHLOROPLAST	36	1.46e-01	0.140000	3.01e-01
RNA REGULATION OF TRANSCRIPTION B3 TRANSCRIPTION FACTOR FAMILY	23	2.47e-01	-0.140000	4.37e-01
RNA REGULATION OF TRANSCRIPTION JUMONJI FAMILY	13	3.90e-01	-0.138000	5.64e-01
SIGNALLING MAP KINASES	44	1.16e-01	-0.137000	2.55e-01
RNA PROCESSING RIBONUCLEASES	47	1.06e-01	0.136000	2.47e-01
MISC PEROXIDASES	60	6.83e-02	0.136000	1.76e-01
LIPID METABOLISM LIPID TRANSFER PROTEINS ETC	13	3.96e-01	0.136000	5.64e-01
MISC GDSL-MOTIF LIPASE	60	7.02e-02	-0.135000	1.78e-01
PROTEIN DEGRADATION UBIQUITIN E2	38	1.55e-01	0.133000	3.13e-01
MISC MISC2	28	2.24e-01	0.133000	4.04e-01
TRANSPORT NITRATE	12	4.28e-01	0.132000	5.89e-01
MISC PROTEASE INHIBITOR/SEED STORAGE/LIPID TRANSFER PROTEIN (LTP) FAMILY PROTEIN	61	8.51e-02	-0.127000	2.05e-01
RNA REGULATION OF TRANSCRIPTION ZN-FINGER(CCHC)	10	4.85e-01	-0.127000	6.52e-01
RNA PROCESSING	101	2.74e-02	0.127000	8.27e-02
REDOX GLUTAREDOXINS	32	2.16e-01	0.127000	4.00e-01
TRANSPORT UNSPECIFIED ANIONS	15	3.98e-01	-0.126000	5.64e-01
PROTEIN DEGRADATION UBIQUITIN UBIQUITIN PROTEASE	20	3.51e-01	0.120000	5.36e-01
HORMONE METABOLISM ETHYLENE INDUCED-REGULATED-RESPONSIVE-ACTIVATED	24	3.08e-01	-0.120000	4.98e-01
CELL WALL CELLULOSE SYNTHESIS	14	4.38e-01	-0.120000	5.98e-01
PROTEIN DEGRADATION CYSTEINE PROTEASE	49	1.48e-01	0.120000	3.02e-01
PROTEIN DEGRADATION	129	1.95e-02	0.119000	6.31e-02
MISC BETA 1,3 GLUCAN HYDROLASES	19	3.79e-01	-0.117000	5.62e-01
MISC CYTOCHROME P450	164	1.09e-02	-0.115000	4.08e-02
REDOX ASCORBATE AND GLUTATHIONE GLUTATHIONE	11	5.12e-01	-0.114000	6.81e-01
HORMONE METABOLISM ABSCISIC ACID SIGNAL TRANSDUCTION	10	5.38e-01	-0.113000	7.01e-01
TRANSPORT METABOLITE TRANSPORTERS AT THE ENVELOPE MEMBRANE	26	3.28e-01	0.111000	5.17e-01
MISC O-METHYL TRANSFERASES	19	4.06e-01	0.110000	5.71e-01
STRESS BIOTIC RECEPTORS	16	4.55e-01	-0.108000	6.17e-01
TRANSPORT POTASSIUM	37	2.74e-01	-0.104000	4.61e-01
STRESS ABIOTIC HEAT	160	2.61e-02	-0.102000	8.04e-02
STRESS ABIOTIC TOUCH/WOUNDING	13	5.34e-01	-0.099600	7.00e-01
RNA PROCESSING RNA HELICASE	33	3.24e-01	-0.099200	5.16e-01
MISC GLUCO-, GALACTO- AND MANNOSIDASES	42	2.67e-01	0.099100	4.54e-01
REDOX DISMUTASES AND CATALASES	12	5.60e-01	0.097100	7.16e-01
STRESS ABIOTIC UNSPECIFIED	84	1.26e-01	-0.096700	2.72e-01
MITOCHONDRIAL ELECTRON TRANSPORT / ATP SYNTHESIS CYTOCHROME C REDUCTASE	10	5.98e-01	0.096400	7.53e-01
SIGNALLING G-PROTEINS	218	1.51e-02	0.095500	5.16e-02
C1-METABOLISM	10	6.03e-01	-0.094900	7.53e-01
RNA REGULATION OF TRANSCRIPTION HDA	16	5.15e-01	0.094000	6.81e-01
PROTEIN DEGRADATION SUBTILASES	35	3.52e-01	-0.091000	5.36e-01
CELL DIVISION	92	1.32e-01	-0.090800	2.79e-01
HORMONE METABOLISM ETHYLENE SIGNAL TRANSDUCTION	30	3.96e-01	-0.089600	5.64e-01
LIPID METABOLISM LIPID DEGRADATION LIPASES TRIACYLGLYCEROL LIPASE	26	4.29e-01	0.089500	5.89e-01
LIPID METABOLISM LIPID DEGRADATION LIPASES	11	6.08e-01	0.089200	7.55e-01
NUCLEOTIDE METABOLISM PHOSPHOTRANSFER AND PYROPHOSPHATASES MISC	11	6.16e-01	0.087300	7.61e-01
PROTEIN TARGETING SECRETORY PATHWAY VACUOLE	29	4.18e-01	0.087000	5.82e-01
SECONDARY METABOLISM PHENYLPROPANOIDS	36	3.67e-01	0.086800	5.50e-01
RNA REGULATION OF TRANSCRIPTION SET-DOMAIN TRANSCRIPTIONAL REGULATOR FAMILY	34	3.93e-01	-0.084700	5.64e-01
PROTEIN TARGETING SECRETORY PATHWAY UNSPECIFIED	72	2.17e-01	0.084200	4.00e-01
SECONDARY METABOLISM ISOPRENOIDS TERPENOIDS	28	4.61e-01	-0.080500	6.23e-01
SIGNALLING LIGHT COP9 SIGNALOSOME	12	6.31e-01	-0.080100	7.70e-01
SIGNALLING CALCIUM	202	5.38e-02	-0.078700	1.47e-01
RNA REGULATION OF TRANSCRIPTION AP2/EREBP, APETALA2/ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN FAMILY	89	2.23e-01	0.074800	4.04e-01
SECONDARY METABOLISM N MISC ALKALOID-LIKE	20	5.76e-01	0.072200	7.33e-01
MISC PLASTOCYANIN-LIKE	24	5.50e-01	0.070500	7.06e-01
SIGNALLING MISC	16	6.32e-01	0.069200	7.70e-01
TRANSPORT P- AND V-ATPASES	27	5.46e-01	0.067100	7.05e-01
LIPID METABOLISM EXOTICS(STEROIDS, SQUALENE ETC)	16	6.46e-01	0.066300	7.80e-01
STRESS ABIOTIC COLD	15	6.61e-01	0.065500	7.93e-01
LIPID METABOLISM LIPID DEGRADATION LYSOPHOSPHOLIPASES GLYCEROPHOSPHODIESTER PHOSPHODIESTERASE	10	7.22e-01	0.064900	8.31e-01
RNA REGULATION OF TRANSCRIPTION AS2,LATERAL ORGAN BOUNDARIES GENE FAMILY	22	6.01e-01	0.064300	7.53e-01
HORMONE METABOLISM AUXIN INDUCED-REGULATED-RESPONSIVE-ACTIVATED	108	2.54e-01	0.063600	4.37e-01
RNA REGULATION OF TRANSCRIPTION UNCLASSIFIED	268	7.86e-02	-0.062400	1.92e-01
CELL WALL DEGRADATION PECTATE LYASES AND POLYGALACTURONASES	66	3.92e-01	0.061000	5.64e-01
DEVELOPMENT UNSPECIFIED	568	1.37e-02	-0.060500	4.92e-02
RNA REGULATION OF TRANSCRIPTION HSF,HEAT-SHOCK TRANSCRIPTION FACTOR FAMILY	18	6.66e-01	0.058800	7.93e-01
METAL HANDLING BINDING, CHELATION AND STORAGE	47	4.93e-01	0.057800	6.59e-01
CELL WALL HEMICELLULOSE SYNTHESIS	11	7.46e-01	0.056400	8.35e-01
TRANSPORT METAL	67	4.28e-01	0.056000	5.89e-01
PROTEIN DEGRADATION SERINE PROTEASE	80	3.88e-01	0.055800	5.64e-01
PROTEIN TARGETING SECRETORY PATHWAY GOLGI	17	6.97e-01	-0.054500	8.19e-01
RNA REGULATION OF TRANSCRIPTION AUX/IAA FAMILY	22	6.64e-01	0.053600	7.93e-01
PROTEIN SYNTHESIS RIBOSOME BIOGENESIS PRE-RRNA PROCESSING AND MODIFICATIONS DEXD-BOX HELICASES	14	7.30e-01	0.053300	8.31e-01
PROTEIN DEGRADATION UBIQUITIN E3 RING	371	8.03e-02	-0.052900	1.95e-01
SIGNALLING RECEPTOR KINASES LEUCINE RICH REPEAT XI	27	6.36e-01	-0.052600	7.72e-01
RNA REGULATION OF TRANSCRIPTION GENERAL TRANSCRIPTION	30	6.18e-01	0.052500	7.61e-01
RNA REGULATION OF TRANSCRIPTION METHYL BINDING DOMAIN PROTEINS	10	7.78e-01	0.051600	8.59e-01
AMINO ACID METABOLISM SYNTHESIS SERINE-GLYCINE-CYSTEINE GROUP CYSTEINE OASTL	10	7.81e-01	0.050800	8.59e-01
TRANSPORT PHOSPHATE	21	6.92e-01	0.049900	8.17e-01
TRANSPORT ABC TRANSPORTERS AND MULTIDRUG RESISTANCE SYSTEMS	110	4.12e-01	-0.045300	5.77e-01
RNA REGULATION OF TRANSCRIPTION NAC DOMAIN TRANSCRIPTION FACTOR FAMILY	16	7.67e-01	-0.042800	8.55e-01
NOT ASSIGNED NO ONTOLOGY TETRATRICOPEPTIDE REPEAT (TPR)	26	7.08e-01	-0.042400	8.28e-01
CELL WALL CELLULOSE SYNTHESIS CELLULOSE SYNTHASE	25	7.20e-01	0.041400	8.31e-01
HORMONE METABOLISM AUXIN SYNTHESIS-DEGRADATION	13	7.99e-01	-0.040700	8.73e-01
LIPID METABOLISM FA SYNTHESIS AND FA ELONGATION ACYL COA LIGASE	19	7.73e-01	0.038200	8.58e-01
CELL CYCLE	86	5.43e-01	-0.038000	7.04e-01
NOT ASSIGNED NO ONTOLOGY C2 DOMAIN-CONTAINING PROTEIN	39	6.82e-01	-0.037900	8.08e-01
RNA REGULATION OF TRANSCRIPTION	13	8.17e-01	-0.037100	8.88e-01
PROTEIN GLYCOSYLATION	27	7.39e-01	0.037000	8.31e-01
RNA REGULATION OF TRANSCRIPTION PHOR1	11	8.43e-01	0.034400	9.02e-01
MISC SHORT CHAIN DEHYDROGENASE/REDUCTASE (SDR)	46	7.27e-01	0.029800	8.31e-01
MISC UDP GLUCOSYL AND GLUCORONYL TRANSFERASES	157	5.26e-01	-0.029300	6.92e-01
TRANSPORT PEPTIDES AND OLIGOPEPTIDES	53	7.20e-01	-0.028500	8.31e-01
PROTEIN DEGRADATION UBIQUITIN	56	7.26e-01	0.027000	8.31e-01
PROTEIN POSTRANSLATIONAL MODIFICATION	504	3.06e-01	-0.026600	4.98e-01
PS LIGHTREACTION CYCLIC ELECTRON FLOW-CHLORORESPIRATION	12	8.76e-01	0.026000	9.18e-01
AMINO ACID METABOLISM DEGRADATION AROMATIC AA TRYPTOPHAN	12	8.76e-01	0.026000	9.18e-01
HORMONE METABOLISM ETHYLENE SYNTHESIS-DEGRADATION	18	8.76e-01	-0.021200	9.18e-01
CELL CYCLE PEPTIDYLPROLYL ISOMERASE	32	8.39e-01	-0.020800	9.01e-01
TRANSPORT AMINO ACIDS	58	7.93e-01	0.019900	8.70e-01
TRANSPORT MISC	114	7.36e-01	0.018300	8.31e-01
STRESS BIOTIC	146	7.33e-01	0.016400	8.31e-01
STRESS ABIOTIC DROUGHT/SALT	65	8.28e-01	0.015600	8.96e-01
MISC INVERTASE/PECTIN METHYLESTERASE INHIBITOR FAMILY PROTEIN	23	8.99e-01	0.015300	9.31e-01
SIGNALLING IN SUGAR AND NUTRIENT PHYSIOLOGY	36	8.88e-01	0.013500	9.27e-01
PROTEIN DEGRADATION AAA TYPE	34	8.97e-01	-0.012800	9.31e-01
DNA UNSPECIFIED	86	8.48e-01	0.012000	9.03e-01
MISC OXIDASES - COPPER, FLAVONE ETC	84	8.51e-01	0.011900	9.03e-01
NOT ASSIGNED UNKNOWN	4467	2.85e-01	-0.010400	4.72e-01
PROTEIN TARGETING NUCLEUS	43	9.09e-01	0.010000	9.38e-01
CELL VESICLE TRANSPORT	157	8.31e-01	-0.009860	8.96e-01
NOT ASSIGNED NO ONTOLOGY	1403	5.89e-01	-0.008630	7.45e-01
RNA REGULATION OF TRANSCRIPTION GEBP LIKE	10	9.64e-01	-0.008330	9.79e-01
RNA REGULATION OF TRANSCRIPTION C2C2(ZN) GATA TRANSCRIPTION FACTOR FAMILY	27	9.42e-01	0.008090	9.68e-01
NUCLEOTIDE METABOLISM DEGRADATION	26	9.46e-01	0.007710	9.68e-01
PROTEIN DEGRADATION METALLOPROTEASE	37	9.61e-01	-0.004670	9.79e-01
NUCLEOTIDE METABOLISM SALVAGE NUDIX HYDROLASES	24	9.81e-01	-0.002820	9.92e-01
REDOX ASCORBATE AND GLUTATHIONE	23	9.94e-01	0.000848	9.97e-01
RNA REGULATION OF TRANSCRIPTION C3H ZINC FINGER FAMILY	24	9.97e-01	-0.000514	9.97e-01
RNA TRANSCRIPTION	83	9.95e-01	-0.000388	9.97e-01

Detailed Gene set reports

RNA_REGULATION_OF_TRANSCRIPTION_CCAAT_BOX_BINDING_FACTOR_FAMILY,_HAP2

RNA_REGULATION_OF_TRANSCRIPTION_CCAAT_BOX_BINDING_FACTOR_FAMILY,_HAP2
	167
set	RNA_REGULATION_OF_TRANSCRIPTION_CCAAT_BOX_BINDING_FACTOR_FAMILY,_HAP2
setSize	10
pANOVA	1.21e-05
s.dist	-0.799
p.adjustANOVA	0.000187

Top enriched genes

Top 20 genes
GeneID	Gene Rank
NFYA8	-10294
NFYA6	-10169
HAP2C	-10116
UNE8	-9403
NFYA1	-9308
NFYA9	-8574
NFYA4	-8426
NFYA10	-8339
NFYA7	-6354
NFYA5	-2357

Click HERE to show all gene set members

All member genes
GeneID	Gene Rank
NFYA8	-10294
NFYA6	-10169
HAP2C	-10116
UNE8	-9403
NFYA1	-9308
NFYA9	-8574
NFYA4	-8426
NFYA10	-8339
NFYA7	-6354
NFYA5	-2357

CELL_WALL_CELL_WALL_PROTEINS_HRGP

CELL_WALL_CELL_WALL_PROTEINS_HRGP
	13
set	CELL_WALL_CELL_WALL_PROTEINS_HRGP
setSize	14
pANOVA	2.28e-07
s.dist	-0.799
p.adjustANOVA	6.38e-06

Top enriched genes

Top 20 genes
GeneID	Gene Rank
EXT3	-10330
EXT2	-10302
AT2G28240	-10290
AT4G08400	-10195
AT2G43150	-9979
AT4G08410	-9650
AT4G28300	-9298
ATEXT4	-8522
AT5G12880	-8466
AT4G16790	-8119
AT1G26240	-7931
AT5G51680	-6791
FRL4B	-6335
FRL4A	-411

Click HERE to show all gene set members

All member genes
GeneID	Gene Rank
EXT3	-10330
EXT2	-10302
AT2G28240	-10290
AT4G08400	-10195
AT2G43150	-9979
AT4G08410	-9650
AT4G28300	-9298
ATEXT4	-8522
AT5G12880	-8466
AT4G16790	-8119
AT1G26240	-7931
AT5G51680	-6791
FRL4B	-6335
FRL4A	-411

REDOX_THIOREDOXIN_PDIL

REDOX_THIOREDOXIN_PDIL
	148
set	REDOX_THIOREDOXIN_PDIL
setSize	13
pANOVA	4.03e-05
s.dist	0.658
p.adjustANOVA	0.00048

Top enriched genes

Top 20 genes
GeneID	Gene Rank
PDIL1-6	9591
PDIL1-3	9396
PDIL1-4	9276
PDIL1-2	9120
PDIL2-2	9070
PDIL2-1	8826
PDIL2-3	8123
PDIL1-5	7857
PDIL5-2	7210
PDIL1-1	6745
PDIL5-1	3485
ATPDIL5-4	1158
PDIL5-3	-3037

Click HERE to show all gene set members

All member genes
GeneID	Gene Rank
PDIL1-6	9591
PDIL1-3	9396
PDIL1-4	9276
PDIL1-2	9120
PDIL2-2	9070
PDIL2-1	8826
PDIL2-3	8123
PDIL1-5	7857
PDIL5-2	7210
PDIL1-1	6745
PDIL5-1	3485
ATPDIL5-4	1158
PDIL5-3	-3037

CELL_WALL_CELL_WALL_PROTEINS_LRR

CELL_WALL_CELL_WALL_PROTEINS_LRR
	14
set	CELL_WALL_CELL_WALL_PROTEINS_LRR
setSize	16
pANOVA	9.78e-06
s.dist	-0.638
p.adjustANOVA	0.00016

Top enriched genes

Top 20 genes
GeneID	Gene Rank
AT2G46630	-10253
PEX1	-10211
LRX4	-10030
LRX5	-9694
LRX1	-9616
AT1G26250	-9390
PEX4	-9081
AT4G06744	-8657
LRX3	-8109
AT1G49490	-6696
AtRLP29	-6527
PEX3	-5984
LRX2	-3984
AT4G29240	-3599
AT2G19780	-3150
LRX6	8135

Click HERE to show all gene set members

All member genes
GeneID	Gene Rank
AT2G46630	-10253
PEX1	-10211
LRX4	-10030
LRX5	-9694
LRX1	-9616
AT1G26250	-9390
PEX4	-9081
AT4G06744	-8657
LRX3	-8109
AT1G49490	-6696
AtRLP29	-6527
PEX3	-5984
LRX2	-3984
AT4G29240	-3599
AT2G19780	-3150
LRX6	8135

TRANSPORT_MAJOR_INTRINSIC_PROTEINS_PIP

TRANSPORT_MAJOR_INTRINSIC_PROTEINS_PIP
	248
set	TRANSPORT_MAJOR_INTRINSIC_PROTEINS_PIP
setSize	13
pANOVA	0.000244
s.dist	0.588
p.adjustANOVA	0.00183

Top enriched genes

Top 20 genes
GeneID	Gene Rank
PIP1.4	10123
PIP2-5	9968
PIP2-7	9691
PIP2-3	8544
PIP2-8	6225
PIP2-1	6070
PIP1-3	5895
PIP2-6	5457
PIP1B	5012
PIP1-5	4806
PIP2-4	3722
PIP1-1	3512
PIP2B	-1584

Click HERE to show all gene set members

All member genes
GeneID	Gene Rank
PIP1.4	10123
PIP2-5	9968
PIP2-7	9691
PIP2-3	8544
PIP2-8	6225
PIP2-1	6070
PIP1-3	5895
PIP2-6	5457
PIP1B	5012
PIP1-5	4806
PIP2-4	3722
PIP1-1	3512
PIP2B	-1584

NOT_ASSIGNED_NO_ONTOLOGY_FORMIN_HOMOLOGY_2_DOMAIN-CONTAINING_PROTEIN

NOT_ASSIGNED_NO_ONTOLOGY_FORMIN_HOMOLOGY_2_DOMAIN-CONTAINING_PROTEIN
	84
set	NOT_ASSIGNED_NO_ONTOLOGY_FORMIN_HOMOLOGY_2_DOMAIN-CONTAINING_PROTEIN
setSize	16
pANOVA	4.73e-05
s.dist	-0.587
p.adjustANOVA	0.000539

Top enriched genes

Top 20 genes
GeneID	Gene Rank
FH1	-10364
AT5G07770	-10208
FH2	-9025
FH14	-8585
FH7	-8035
FH6	-7714
FH13	-7532
AT5G07760	-6840
AT5G07650	-5769
FH11	-5702
FH19	-5672
AT2G25050	-4398
ZOP1	-3966
FH10	-3635
FH9	-3514
FH5	2524

Click HERE to show all gene set members

All member genes
GeneID	Gene Rank
FH1	-10364
AT5G07770	-10208
FH2	-9025
FH14	-8585
FH7	-8035
FH6	-7714
FH13	-7532
AT5G07760	-6840
AT5G07650	-5769
FH11	-5702
FH19	-5672
AT2G25050	-4398
ZOP1	-3966
FH10	-3635
FH9	-3514
FH5	2524

NOT_ASSIGNED_NO_ONTOLOGY_PROLINE_RICH_FAMILY

NOT_ASSIGNED_NO_ONTOLOGY_PROLINE_RICH_FAMILY
	88
set	NOT_ASSIGNED_NO_ONTOLOGY_PROLINE_RICH_FAMILY
setSize	37
pANOVA	9e-10
s.dist	-0.582
p.adjustANOVA	7.86e-08

Top enriched genes

Top 20 genes
GeneID	Gene Rank
AT2G24980	-10380
AT5G06640	-10350
AT1G23720	-10326
AT3G54580	-10317
AT5G06630	-10273
AT3G28550	-10261
AT5G11990	-10194
AT5G35190	-9966
AT3G22070	-9865
AT4G16140	-9735
AT5G19810	-9660
ELF5	-9585
AT5G26080	-9518
AT4G13390	-9473
AT4G00890	-8732
AT1G12810	-8717
AT1G70990	-8284
AT1G31750	-7912
AT1G61080	-7630
AT4G08380	-6167

Click HERE to show all gene set members

All member genes
GeneID	Gene Rank
AT2G24980	-10380
AT5G06640	-10350
AT1G23720	-10326
AT3G54580	-10317
AT5G06630	-10273
AT3G28550	-10261
AT5G11990	-10194
AT5G35190	-9966
AT3G22070	-9865
AT4G16140	-9735
AT5G19810	-9660
ELF5	-9585
AT5G26080	-9518
AT4G13390	-9473
AT4G00890	-8732
AT1G12810	-8717
AT1G70990	-8284
AT1G31750	-7912
AT1G61080	-7630
AT4G08380	-6167
AT4G18570	-6110
AT5G45350	-6059
AT1G02110	-5879
AT3G49845	-5473
AT4G27850	-5383
WIH2	-4863
AT2G28440	-4512
AT4G19200	-4214
AT3G09000	-2293
AT2G34670	-1383
AT3G20850	-1356
AT3G49840	-973
AT1G63830	-877
AT3G51290	-600
AT1G64450	-478
MPH1	4711
AT2G16630	7823

DEVELOPMENT_LATE_EMBRYOGENESIS_ABUNDANT

DEVELOPMENT_LATE_EMBRYOGENESIS_ABUNDANT
	20
set	DEVELOPMENT_LATE_EMBRYOGENESIS_ABUNDANT
setSize	18
pANOVA	1.97e-05
s.dist	0.581
p.adjustANOVA	0.000271

Top enriched genes

Top 20 genes
GeneID	Gene Rank
LEA46	10191
LEA29	10029
SAG21	10001
AT5G54370	9909
AT3G19430	9558
AT1G54890	8968
AT2G44060	8561
LEA14	8530
LEA18	8020
LEA7	7802
AT5G60520	6286
ECP63	5910
AT5G60530	4518
AT4G27400	4082
AT3G50790	3304
AT2G46140	1333
AT3G53040	-3402
LEA2	-7605

Click HERE to show all gene set members

All member genes
GeneID	Gene Rank
LEA46	10191
LEA29	10029
SAG21	10001
AT5G54370	9909
AT3G19430	9558
AT1G54890	8968
AT2G44060	8561
LEA14	8530
LEA18	8020
LEA7	7802
AT5G60520	6286
ECP63	5910
AT5G60530	4518
AT4G27400	4082
AT3G50790	3304
AT2G46140	1333
AT3G53040	-3402
LEA2	-7605

RNA_REGULATION_OF_TRANSCRIPTION_ARF,_AUXIN_RESPONSE_FACTOR_FAMILY

RNA_REGULATION_OF_TRANSCRIPTION_ARF,_AUXIN_RESPONSE_FACTOR_FAMILY
	155
set	RNA_REGULATION_OF_TRANSCRIPTION_ARF,_AUXIN_RESPONSE_FACTOR_FAMILY
setSize	16
pANOVA	0.000237
s.dist	-0.531
p.adjustANOVA	0.00183

Top enriched genes

Top 20 genes
GeneID	Gene Rank
ARF20	-9568
ARF19	-9558
ARF9	-9309
ARF6	-9259
ARF17	-9041
ARF2	-8542
ARF11	-8487
ARF8	-8363
ARF10	-8094
ARF4	-7247
ARF1	-3717
ARF16	-2431
ARF14	-476
ARF18	-384
ARF3	897
ARF5	4497

Click HERE to show all gene set members

All member genes
GeneID	Gene Rank
ARF20	-9568
ARF19	-9558
ARF9	-9309
ARF6	-9259
ARF17	-9041
ARF2	-8542
ARF11	-8487
ARF8	-8363
ARF10	-8094
ARF4	-7247
ARF1	-3717
ARF16	-2431
ARF14	-476
ARF18	-384
ARF3	897
ARF5	4497

RNA_REGULATION_OF_TRANSCRIPTION_NUCLEOSOME/CHROMATIN_ASSEMBLY_FACTOR_GROUP

RNA_REGULATION_OF_TRANSCRIPTION_NUCLEOSOME/CHROMATIN_ASSEMBLY_FACTOR_GROUP
	183
set	RNA_REGULATION_OF_TRANSCRIPTION_NUCLEOSOME/CHROMATIN_ASSEMBLY_FACTOR_GROUP
setSize	13
pANOVA	0.00095
s.dist	-0.529
p.adjustANOVA	0.00566

Top enriched genes

Top 20 genes
GeneID	Gene Rank
AT5G08630	-10155
HMGB9	-10022
HMGB1	-9748
FAS2	-9135
HMGB7	-8453
HMGB6	-7975
HMGB2	-7164
HMGB5	-4745
HMGB4	-2427
HMGB10	-2049
SSRP1	-123
HMGB3	-111
HMGB12	-104

Click HERE to show all gene set members

All member genes
GeneID	Gene Rank
AT5G08630	-10155
HMGB9	-10022
HMGB1	-9748
FAS2	-9135
HMGB7	-8453
HMGB6	-7975
HMGB2	-7164
HMGB5	-4745
HMGB4	-2427
HMGB10	-2049
SSRP1	-123
HMGB3	-111
HMGB12	-104

PS_LIGHTREACTION_PHOTOSYSTEM_II_LHC-II

PS_LIGHTREACTION_PHOTOSYSTEM_II_LHC-II
	139
set	PS_LIGHTREACTION_PHOTOSYSTEM_II_LHC-II
setSize	14
pANOVA	0.000631
s.dist	-0.528
p.adjustANOVA	0.00406

Top enriched genes

Top 20 genes
GeneID	Gene Rank
LHCB1.1	-10408
LHCB3	-10402
LHCB2.4	-10394
LHCB4.2	-10349
LHCB2.2	-10299
LHCB2.1	-10268
LHCB6	-9074
LHB1B2	-8152
LHCB7	-6636
LHCB4.3	-5956
LHCB5	1931
LHCB1.3	2806
LHB1B1	4647
LHCB4.1	5049

Click HERE to show all gene set members

All member genes
GeneID	Gene Rank
LHCB1.1	-10408
LHCB3	-10402
LHCB2.4	-10394
LHCB4.2	-10349
LHCB2.2	-10299
LHCB2.1	-10268
LHCB6	-9074
LHB1B2	-8152
LHCB7	-6636
LHCB4.3	-5956
LHCB5	1931
LHCB1.3	2806
LHB1B1	4647
LHCB4.1	5049

RNA_REGULATION_OF_TRANSCRIPTION_TRIHELIX,_TRIPLE-HELIX_TRANSCRIPTION_FACTOR_FAMILY

RNA_REGULATION_OF_TRANSCRIPTION_TRIHELIX,_TRIPLE-HELIX_TRANSCRIPTION_FACTOR_FAMILY
	191
set	RNA_REGULATION_OF_TRANSCRIPTION_TRIHELIX,_TRIPLE-HELIX_TRANSCRIPTION_FACTOR_FAMILY
setSize	30
pANOVA	7.51e-07
s.dist	-0.522
p.adjustANOVA	1.79e-05

Top enriched genes

Top 20 genes
GeneID	Gene Rank
AT-GTL1	-9453
AT3G01560	-9232
ASIL2	-9092
AT1G76880	-9012
GT-3B	-8709
PTL	-8649
EDA31	-8520
AT2G44730	-8306
AT5G28300	-7562
AT3G24860	-7200
AT3G10040	-7132
AT5G14540	-7053
AT1G11850	-6860
AT2G35640	-6524
ASIL1	-6192
AT4G31270	-6140
AT4G29030	-6022
AT3G54390	-6015
AT3G24490	-5814
GT-2	-5742

Click HERE to show all gene set members

All member genes
GeneID	Gene Rank
AT-GTL1	-9453
AT3G01560	-9232
ASIL2	-9092
AT1G76880	-9012
GT-3B	-8709
PTL	-8649
EDA31	-8520
AT2G44730	-8306
AT5G28300	-7562
AT3G24860	-7200
AT3G10040	-7132
AT5G14540	-7053
AT1G11850	-6860
AT2G35640	-6524
ASIL1	-6192
AT4G31270	-6140
AT4G29030	-6022
AT3G54390	-6015
AT3G24490	-5814
GT-2	-5742
AT1G21200	-5551
UGLYAH	-4984
GT-3A	-4889
GT-1	-2916
AT5G47660	-2669
AT3G58630	-1898
GT-4	1030
AT1G31310	1117
AT5G05550	2836
AT3G11100	2973

RNA_REGULATION_OF_TRANSCRIPTION_PWWP_DOMAIN_PROTEIN

RNA_REGULATION_OF_TRANSCRIPTION_PWWP_DOMAIN_PROTEIN
	187
set	RNA_REGULATION_OF_TRANSCRIPTION_PWWP_DOMAIN_PROTEIN
setSize	11
pANOVA	0.00343
s.dist	-0.509
p.adjustANOVA	0.0167

Top enriched genes

Top 20 genes
GeneID	Gene Rank
HULK1	-9479
AT5G40340	-9399
HUA2	-7202
AT5G27650	-6756
HULK3	-5893
AT3G21295	-5447
AT5G02950	-4600
AT2G48160	-3976
AT3G05430	-3936
AT3G27860	-1951
AT3G09670	-217

Click HERE to show all gene set members

All member genes
GeneID	Gene Rank
HULK1	-9479
AT5G40340	-9399
HUA2	-7202
AT5G27650	-6756
HULK3	-5893
AT3G21295	-5447
AT5G02950	-4600
AT2G48160	-3976
AT3G05430	-3936
AT3G27860	-1951
AT3G09670	-217

PROTEIN_TARGETING_SECRETORY_PATHWAY_ER

PROTEIN_TARGETING_SECRETORY_PATHWAY_ER
	133
set	PROTEIN_TARGETING_SECRETORY_PATHWAY_ER
setSize	14
pANOVA	0.00112
s.dist	0.503
p.adjustANOVA	0.0065

Top enriched genes

Top 20 genes
GeneID	Gene Rank
ERD2A	9905
AT2G21190	9511
RER1C	8196
ERO2	7900
AT1G19970	7476
AT4G38790	6686
AT2G39960	6050
ERD2B	5465
AT2G18240	4712
AT1G75760	3613
RER1B	2567
RER1A	1635
PVA12	756
AERO1	-3273

Click HERE to show all gene set members

All member genes
GeneID	Gene Rank
ERD2A	9905
AT2G21190	9511
RER1C	8196
ERO2	7900
AT1G19970	7476
AT4G38790	6686
AT2G39960	6050
ERD2B	5465
AT2G18240	4712
AT1G75760	3613
RER1B	2567
RER1A	1635
PVA12	756
AERO1	-3273

SIGNALLING_RECEPTOR_KINASES_WHEAT_LRK10_LIKE

SIGNALLING_RECEPTOR_KINASES_WHEAT_LRK10_LIKE
	230
set	SIGNALLING_RECEPTOR_KINASES_WHEAT_LRK10_LIKE
setSize	12
pANOVA	0.00286
s.dist	-0.497
p.adjustANOVA	0.0144

Top enriched genes

Top 20 genes
GeneID	Gene Rank
LRK10L-1.1	-9107
LRK10L-2.8	-8536
AT5G38240	-7873
AT5G38210	-7797
LRK10L-2.4	-6499
AT1G66880	-5752
LRK10L-2.1	-4877
LRK10L-2.7	-4568
LRK10L-1.5	-4122
AT1G18390	-1689
LRK10L-2.3	-1300
LRK10L-2.5	-565

Click HERE to show all gene set members

All member genes
GeneID	Gene Rank
LRK10L-1.1	-9107
LRK10L-2.8	-8536
AT5G38240	-7873
AT5G38210	-7797
LRK10L-2.4	-6499
AT1G66880	-5752
LRK10L-2.1	-4877
LRK10L-2.7	-4568
LRK10L-1.5	-4122
AT1G18390	-1689
LRK10L-2.3	-1300
LRK10L-2.5	-565

STRESS_BIOTIC_PR-PROTEINS_PLANT_DEFENSINS

STRESS_BIOTIC_PR-PROTEINS_PLANT_DEFENSINS
	239
set	STRESS_BIOTIC_PR-PROTEINS_PLANT_DEFENSINS
setSize	15
pANOVA	0.000914
s.dist	0.494
p.adjustANOVA	0.00562

Top enriched genes

Top 20 genes
GeneID	Gene Rank
AT3G59930	9943
AT4G11393	9843
AT4G22235	9789
AT5G33355	9642
AT2G36255	9597
AT3G63360	8602
AT1G34047	8260
EDA21	7685
AT4G22230	5193
ATTI1	3385
AT3G05730	1855
AT4G22214	800
ATTI2	-155
AT4G22217	-4129
AT4G22212	-5360

Click HERE to show all gene set members

All member genes
GeneID	Gene Rank
AT3G59930	9943
AT4G11393	9843
AT4G22235	9789
AT5G33355	9642
AT2G36255	9597
AT3G63360	8602
AT1G34047	8260
EDA21	7685
AT4G22230	5193
ATTI1	3385
AT3G05730	1855
AT4G22214	800
ATTI2	-155
AT4G22217	-4129
AT4G22212	-5360

SECONDARY_METABOLISM_SIMPLE_PHENOLS

SECONDARY_METABOLISM_SIMPLE_PHENOLS
	203
set	SECONDARY_METABOLISM_SIMPLE_PHENOLS
setSize	16
pANOVA	0.000635
s.dist	-0.493
p.adjustANOVA	0.00406

Top enriched genes

Top 20 genes
GeneID	Gene Rank
LAC13	-10348
IRX12	-9897
LAC7	-9575
LAC10	-9248
LAC2	-9184
LAC6	-8777
LAC5	-8671
LAC17	-8653
LAC3	-8047
LAC16	-6504
LAC12	-6073
LAC8	-3118
LAC1	-2104
AT1G33030	4529
LAC11	5876
IGMT5	6885

Click HERE to show all gene set members

All member genes
GeneID	Gene Rank
LAC13	-10348
IRX12	-9897
LAC7	-9575
LAC10	-9248
LAC2	-9184
LAC6	-8777
LAC5	-8671
LAC17	-8653
LAC3	-8047
LAC16	-6504
LAC12	-6073
LAC8	-3118
LAC1	-2104
AT1G33030	4529
LAC11	5876
IGMT5	6885

PROTEIN_DEGRADATION_UBIQUITIN_PROTEASOM

PROTEIN_DEGRADATION_UBIQUITIN_PROTEASOM
	110
set	PROTEIN_DEGRADATION_UBIQUITIN_PROTEASOM
setSize	60
pANOVA	4.95e-11
s.dist	0.49
p.adjustANOVA	6.48e-09

Top enriched genes

Top 20 genes
GeneID	Gene Rank
PAE2	10158
PBC2	9872
AT3G02200	9840
PBD1	9820
PBE1	9800
RPN11	9722
RPT4B	9327
TIF3F1	9295
PAF1	9172
RPN7	9136
PBG1	9037
PBE2	8997
AT5G38650	8991
AT1G67250	8909
PAC1	8844
RPN12A	8787
RPN6	8728
RPT6B	8393
PAE1	8385
AT5G53540	8216

Click HERE to show all gene set members

All member genes
GeneID	Gene Rank
PAE2	10158
PBC2	9872
AT3G02200	9840
PBD1	9820
PBE1	9800
RPN11	9722
RPT4B	9327
TIF3F1	9295
PAF1	9172
RPN7	9136
PBG1	9037
PBE2	8997
AT5G38650	8991
AT1G67250	8909
PAC1	8844
RPN12A	8787
RPN6	8728
RPT6B	8393
PAE1	8385
AT5G53540	8216
PBC1	8061
EER5	8028
AT4G19006	7545
RPT1A	7382
PBB1	7358
RPT6A	7316
PBB2	7300
AT5G15610	6736
RPN8B	6372
PAG1	5776
RPN3A	5505
RPT5B	5255
AT3G53970	5101
PAA1	4230
RPN1A	4159
RPN1B	3881
RPN9A	3715
RPN5B	3714
AT3G15180	3647
PAF2	3643
RPT2B	3540
RPT5A	3470
PBD2	3106
RPN3B	3041
EMB2107	2750
PBA1	2283
PAD2	2237
RPT4A	1691
RPN12B	1561
RPT2A	959
RPN2B	795
RPN8A	-874
PBF1	-1045
PAB2	-2180
RPN2A	-2634
PAA2	-2857
AT3G03060	-3380
RPT3	-3630
AT1G53780	-4605
AT5G57950	-5759

HORMONE_METABOLISM_GIBBERELIN_INDUCED-REGULATED-RESPONSIVE-ACTIVATED

HORMONE_METABOLISM_GIBBERELIN_INDUCED-REGULATED-RESPONSIVE-ACTIVATED
	38
set	HORMONE_METABOLISM_GIBBERELIN_INDUCED-REGULATED-RESPONSIVE-ACTIVATED
setSize	12
pANOVA	0.00391
s.dist	0.481
p.adjustANOVA	0.0186

Top enriched genes

Top 20 genes
GeneID	Gene Rank
GASA1	9845
GASA7	9670
GAI	9483
GASA3	9417
GASA4	9047
AGP15	8539
GASA10	7414
GASA5	6428
GASA6	5565
GASA14	-579
AHL15	-6137
GASA9	-10385

Click HERE to show all gene set members

All member genes
GeneID	Gene Rank
GASA1	9845
GASA7	9670
GAI	9483
GASA3	9417
GASA4	9047
AGP15	8539
GASA10	7414
GASA5	6428
GASA6	5565
GASA14	-579
AHL15	-6137
GASA9	-10385

SIGNALLING_RECEPTOR_KINASES_PROLINE_EXTENSIN_LIKE

SIGNALLING_RECEPTOR_KINASES_PROLINE_EXTENSIN_LIKE
	227
set	SIGNALLING_RECEPTOR_KINASES_PROLINE_EXTENSIN_LIKE
setSize	15
pANOVA	0.00141
s.dist	-0.476
p.adjustANOVA	0.00784

Top enriched genes

Top 20 genes
GeneID	Gene Rank
EXT2	-10302
PERK10	-10283
PERK15	-9720
PERK4	-9108
PERK14	-8742
PERK12	-7857
PERK9	-7626
PERK1	-7288
PERK8	-6652
AT3G13690	-4955
AT1G70450	-2376
PERK13	-2318
AT3G24540	294
AT5G56790	3452
AT1G55200	8384

Click HERE to show all gene set members

All member genes
GeneID	Gene Rank
EXT2	-10302
PERK10	-10283
PERK15	-9720
PERK4	-9108
PERK14	-8742
PERK12	-7857
PERK9	-7626
PERK1	-7288
PERK8	-6652
AT3G13690	-4955
AT1G70450	-2376
PERK13	-2318
AT3G24540	294
AT5G56790	3452
AT1G55200	8384

PROTEIN_DEGRADATION_UBIQUITIN_E3_BTB/POZ_CULLIN3_BTB/POZ

PROTEIN_DEGRADATION_UBIQUITIN_E3_BTB/POZ_CULLIN3_BTB/POZ
	106
set	PROTEIN_DEGRADATION_UBIQUITIN_E3_BTB/POZ_CULLIN3_BTB/POZ
setSize	10
pANOVA	0.0112
s.dist	0.463
p.adjustANOVA	0.0412

Top enriched genes

Top 20 genes
GeneID	Gene Rank
BT1	9601
BT2	9071
BPM2	8494
AT1G21780	6507
BPM3	5388
BPM1	4331
BT5	3097
BPM6	535
AT1G01640	-91
BT3	-147

Click HERE to show all gene set members

All member genes
GeneID	Gene Rank
BT1	9601
BT2	9071
BPM2	8494
AT1G21780	6507
BPM3	5388
BPM1	4331
BT5	3097
BPM6	535
AT1G01640	-91
BT3	-147

RNA_REGULATION_OF_TRANSCRIPTION_MYB-RELATED_TRANSCRIPTION_FACTOR_FAMILY

RNA_REGULATION_OF_TRANSCRIPTION_MYB-RELATED_TRANSCRIPTION_FACTOR_FAMILY
	181
set	RNA_REGULATION_OF_TRANSCRIPTION_MYB-RELATED_TRANSCRIPTION_FACTOR_FAMILY
setSize	42
pANOVA	2.44e-07
s.dist	-0.46
p.adjustANOVA	6.38e-06

Top enriched genes

Top 20 genes
GeneID	Gene Rank
ATMYBL2	-10353
LHY	-9788
AT2G38090	-9679
CCA1	-9618
AT5G58900	-9543
ATRL3	-9330
RVE8	-9293
AT5G58340	-9210
CDC5	-9034
AT5G56840	-8858
ATRL6	-8627
AT1G74840	-7894
TRB1	-7875
TRB2	-7865
RVE1	-7727
AT5G05790	-7524
ETC3	-7088
AT1G01520	-6625
RVE7	-6509
SRM1	-6500

Click HERE to show all gene set members

All member genes
GeneID	Gene Rank
ATMYBL2	-10353
LHY	-9788
AT2G38090	-9679
CCA1	-9618
AT5G58900	-9543
ATRL3	-9330
RVE8	-9293
AT5G58340	-9210
CDC5	-9034
AT5G56840	-8858
ATRL6	-8627
AT1G74840	-7894
TRB1	-7875
TRB2	-7865
RVE1	-7727
AT5G05790	-7524
ETC3	-7088
AT1G01520	-6625
RVE7	-6509
SRM1	-6500
RVE4	-6472
TRB3	-6425
RL1	-6306
AT1G70000	-6244
RL2	-6168
AT1G49010	-5050
TRY	-4858
AT3G11280	-4204
KUA1	-3393
GT-1	-2916
CPC	-2770
ETC1	-2102
AT3G16350	-1841
AT1G19000	-1630
AT5G01200	434
RVE5	1979
AT1G17520	2292
RVE6	2418
RVE2	2860
AT1G35516	3002
ETC2	3878
AT5G04760	9334

SIGNALLING_14-3-3_PROTEINS

SIGNALLING_14-3-3_PROTEINS
	205
set	SIGNALLING_14-3-3_PROTEINS
setSize	11
pANOVA	0.00852
s.dist	0.458
p.adjustANOVA	0.0354

Top enriched genes

Top 20 genes
GeneID	Gene Rank
GRF9	9736
GRF8	9686
GRF1	9112
GRF6	9039
GRF7	6021
GRF5	5836
GRF3	5831
GRF10	4229
GRF2	-1131
GRF11	-1887
AT1G22290	-5621

Click HERE to show all gene set members

All member genes
GeneID	Gene Rank
GRF9	9736
GRF8	9686
GRF1	9112
GRF6	9039
GRF7	6021
GRF5	5836
GRF3	5831
GRF10	4229
GRF2	-1131
GRF11	-1887
AT1G22290	-5621

SIGNALLING_RECEPTOR_KINASES_LEUCINE_RICH_REPEAT_VI

SIGNALLING_RECEPTOR_KINASES_LEUCINE_RICH_REPEAT_VI
	221
set	SIGNALLING_RECEPTOR_KINASES_LEUCINE_RICH_REPEAT_VI
setSize	10
pANOVA	0.0152
s.dist	-0.443
p.adjustANOVA	0.0516

Top enriched genes

Top 20 genes
GeneID	Gene Rank
AT5G14210	-9742
AT2G02780	-9476
AT5G07150	-7899
AT1G63430	-5467
AT3G03770	-4469
AT5G45840	-4383
AT5G63410	-3406
AT5G41180	-1953
MDIS2	-530
AT1G14390	626

Click HERE to show all gene set members

All member genes
GeneID	Gene Rank
AT5G14210	-9742
AT2G02780	-9476
AT5G07150	-7899
AT1G63430	-5467
AT3G03770	-4469
AT5G45840	-4383
AT5G63410	-3406
AT5G41180	-1953
MDIS2	-530
AT1G14390	626

PROTEIN_ASSEMBLY_AND_COFACTOR_LIGATION

PROTEIN_ASSEMBLY_AND_COFACTOR_LIGATION
	95
set	PROTEIN_ASSEMBLY_AND_COFACTOR_LIGATION
setSize	23
pANOVA	0.000267
s.dist	0.439
p.adjustANOVA	0.00191

Top enriched genes

Top 20 genes
GeneID	Gene Rank
YCF3	10126
NIFU1	8569
FKBP13	8185
ABCI6	8027
NIFU2	7990
NIFU4	7703
APO1	7449
CCSA	7366
AT1G54500	6703
ISU1	6155
CCB4	5903
HCF136	5136
YCF1.2	4284
ENH1	3850
CCB1	3658
YCF4	2606
NIFU3	2219
HCF164	2052
CcdA	2000
ycf2-B	1108

Click HERE to show all gene set members

All member genes
GeneID	Gene Rank
YCF3	10126
NIFU1	8569
FKBP13	8185
ABCI6	8027
NIFU2	7990
NIFU4	7703
APO1	7449
CCSA	7366
AT1G54500	6703
ISU1	6155
CCB4	5903
HCF136	5136
YCF1.2	4284
ENH1	3850
CCB1	3658
YCF4	2606
NIFU3	2219
HCF164	2052
CcdA	2000
ycf2-B	1108
HCF101	62
NIFU5	-1869
ABCI8	-7526

NOT_ASSIGNED_NO_ONTOLOGY_GLYCINE_RICH_PROTEINS

NOT_ASSIGNED_NO_ONTOLOGY_GLYCINE_RICH_PROTEINS
	85
set	NOT_ASSIGNED_NO_ONTOLOGY_GLYCINE_RICH_PROTEINS
setSize	52
pANOVA	4.51e-08
s.dist	-0.438
p.adjustANOVA	1.48e-06

Top enriched genes

Top 20 genes
GeneID	Gene Rank
AT1G67870	-10357
AT1G04800	-10308
HIPP33	-10304
AT5G28630	-10295
AT2G05510	-10281
GRP23	-10269
AT1G07135	-10243
AT3G29075	-10187
AT5G46730	-10122
AT2G05580	-10090
AT1G04660	-9764
AT1G15280	-9760
AT1G75550	-9652
OPSL1	-9580
AT3G04640	-9417
AT4G36230	-9360
AT1G27710	-9357
P23-1	-9250
AT5G61660	-8958
GRP5	-8912

Click HERE to show all gene set members

All member genes
GeneID	Gene Rank
AT1G67870	-10357
AT1G04800	-10308
HIPP33	-10304
AT5G28630	-10295
AT2G05510	-10281
GRP23	-10269
AT1G07135	-10243
AT3G29075	-10187
AT5G46730	-10122
AT2G05580	-10090
AT1G04660	-9764
AT1G15280	-9760
AT1G75550	-9652
OPSL1	-9580
AT3G04640	-9417
AT4G36230	-9360
AT1G27710	-9357
P23-1	-9250
AT5G61660	-8958
GRP5	-8912
AT4G38710	-7716
TGD5	-7574
AT4G08230	-7477
AT5G11700	-7172
AT5G49350	-7103
OPS	-6906
AT4G22740	-6822
DOT1	-6382
AT4G30460	-6123
AT3G59640	-6121
AT4G18280	-5080
AT5G17650	-4527
GRP18	-4175
AT4G17620	-3951
AT4G37682	-1577
AT4G30450	-1192
AT4G29020	-972
AT1G27090	-311
AT5G47020	-305
ATGRP9	-243
GRDP1	123
AT2G15780	175
GIF1	1079
AT4G32920	3323
GRP3S	3330
AT3G06780	3807
GRP3	4722
AT2G05540	4888
AT4G10330	4941
GRDP2	5544
AT4G21620	7221
AT1G66820	9397

PROTEIN_SYNTHESIS_ELONGATION

PROTEIN_SYNTHESIS_ELONGATION
	121
set	PROTEIN_SYNTHESIS_ELONGATION
setSize	29
pANOVA	7.64e-05
s.dist	0.424
p.adjustANOVA	8e-04

Top enriched genes

Top 20 genes
GeneID	Gene Rank
A1	10213
AT1G57720	10133
AT5G19510	10032
AT1G30230	9858
AT1G09640	9856
LOS1	9807
AT2G31060	9175
TUFA	8982
TFIIS	8719
AT4G26310	8647
AT2G18110	8408
AT4G10480	8386
AT3G08740	8074
AT3G22980	6187
NACA2	4464
EFTS	3843
CLO	3428
MEFG2	3088
ACR7	2828
AT5G13650	1380

Click HERE to show all gene set members

All member genes
GeneID	Gene Rank
A1	10213
AT1G57720	10133
AT5G19510	10032
AT1G30230	9858
AT1G09640	9856
LOS1	9807
AT2G31060	9175
TUFA	8982
TFIIS	8719
AT4G26310	8647
AT2G18110	8408
AT4G10480	8386
AT3G08740	8074
AT3G22980	6187
NACA2	4464
EFTS	3843
CLO	3428
MEFG2	3088
ACR7	2828
AT5G13650	1380
AT3G12915	1240
AT5G10630	-835
CPEFG	-1244
GFL	-1682
AT5G12110	-2351
emb2726	-2649
MEFG1	-3385
ATRNL	-5290
AT3G12390	-5450

DNA_SYNTHESIS/CHROMATIN_STRUCTURE_HISTONE_CORE_H2A

DNA_SYNTHESIS/CHROMATIN_STRUCTURE_HISTONE_CORE_H2A
	26
set	DNA_SYNTHESIS/CHROMATIN_STRUCTURE_HISTONE_CORE_H2A
setSize	13
pANOVA	0.00948
s.dist	0.416
p.adjustANOVA	0.0385

Top enriched genes

Top 20 genes
GeneID	Gene Rank
HTA13	10084
HTA6	9984
HTA7	9680
RAT5	9679
HTA9	9546
HTA10	9176
HTA8	5865
HTA2	3899
HTA3	1714
H2AV	1337
H2B	-4659
HTA5	-5586
HTA12	-6326

Click HERE to show all gene set members

All member genes
GeneID	Gene Rank
HTA13	10084
HTA6	9984
HTA7	9680
RAT5	9679
HTA9	9546
HTA10	9176
HTA8	5865
HTA2	3899
HTA3	1714
H2AV	1337
H2B	-4659
HTA5	-5586
HTA12	-6326

PROTEIN_SYNTHESIS_RIBOSOME_BIOGENESIS_PRE-RRNA_PROCESSING_AND_MODIFICATIONS_SNORNPS

PROTEIN_SYNTHESIS_RIBOSOME_BIOGENESIS_PRE-RRNA_PROCESSING_AND_MODIFICATIONS_SNORNPS
	128
set	PROTEIN_SYNTHESIS_RIBOSOME_BIOGENESIS_PRE-RRNA_PROCESSING_AND_MODIFICATIONS_SNORNPS
setSize	13
pANOVA	0.0107
s.dist	0.409
p.adjustANOVA	0.0407

Top enriched genes

Top 20 genes
GeneID	Gene Rank
AT5G08180	9874
NOP5-2	9596
AT4G22380	9125
AT3G06530	7656
AT3G12860	6561
AT2G40700	5354
NOP10	4656
CBF5	3779
AT5G18180	3487
NUCL1	2338
NUCL2	1277
AT3G03920	-1539
AT5G66540	-8677

Click HERE to show all gene set members

All member genes
GeneID	Gene Rank
AT5G08180	9874
NOP5-2	9596
AT4G22380	9125
AT3G06530	7656
AT3G12860	6561
AT2G40700	5354
NOP10	4656
CBF5	3779
AT5G18180	3487
NUCL1	2338
NUCL2	1277
AT3G03920	-1539
AT5G66540	-8677

RNA_REGULATION_OF_TRANSCRIPTION_G2-LIKE_TRANSCRIPTION_FACTOR_FAMILY,_GARP

RNA_REGULATION_OF_TRANSCRIPTION_G2-LIKE_TRANSCRIPTION_FACTOR_FAMILY,_GARP
	169
set	RNA_REGULATION_OF_TRANSCRIPTION_G2-LIKE_TRANSCRIPTION_FACTOR_FAMILY,_GARP
setSize	37
pANOVA	2.07e-05
s.dist	-0.404
p.adjustANOVA	0.000272

Top enriched genes

Top 20 genes
GeneID	Gene Rank
AT2G38300	-10287
GLK2	-9881
PHR1	-9559
KAN2	-9539
AT1G69580	-9489
AT3G10760	-9117
KAN1	-8936
AT4G35940	-8838
AT5G06800	-8812
AT5G05090	-8589
AT2G40260	-8486
MYR1	-8464
APL	-8427
EFM	-8373
PHL12	-8234
MYR2	-8081
PHL13	-6820
PHL7	-6796
GPRI1	-6762
KAN3	-6540

Click HERE to show all gene set members

All member genes
GeneID	Gene Rank
AT2G38300	-10287
GLK2	-9881
PHR1	-9559
KAN2	-9539
AT1G69580	-9489
AT3G10760	-9117
KAN1	-8936
AT4G35940	-8838
AT5G06800	-8812
AT5G05090	-8589
AT2G40260	-8486
MYR1	-8464
APL	-8427
EFM	-8373
PHL12	-8234
MYR2	-8081
PHL13	-6820
PHL7	-6796
GPRI1	-6762
KAN3	-6540
AT2G20400	-5694
MYBC1	-5402
AT1G14600	-4952
AT2G42660	-4351
PHL11	-2138
HHO5	-2068
AT3G24120	-1855
PHL6	-1692
PHL1	899
HRS1	2184
KAN4	3226
UNE16	3497
HHO2	4357
HHO6	4462
HHO3	4987
PCL1	6838
BOA	10047

PS_LIGHTREACTION_NADH_DH

PS_LIGHTREACTION_NADH_DH
	138
set	PS_LIGHTREACTION_NADH_DH
setSize	12
pANOVA	0.0154
s.dist	0.404
p.adjustANOVA	0.0518

Top enriched genes

Top 20 genes
GeneID	Gene Rank
NDHC	10132
NDHJ	9827
NDHF	9633
NDHK	9054
NDHD	8271
NDHG	6137
AT4G37920	4502
ndhN	3248
CRR3	102
NDHM	-1741
ndhL	-3937
ndhO	-6469

Click HERE to show all gene set members

All member genes
GeneID	Gene Rank
NDHC	10132
NDHJ	9827
NDHF	9633
NDHK	9054
NDHD	8271
NDHG	6137
AT4G37920	4502
ndhN	3248
CRR3	102
NDHM	-1741
ndhL	-3937
ndhO	-6469

PROTEIN_TARGETING_MITOCHONDRIA

PROTEIN_TARGETING_MITOCHONDRIA
	130
set	PROTEIN_TARGETING_MITOCHONDRIA
setSize	31
pANOVA	0.000155
s.dist	0.392
p.adjustANOVA	0.00136

Top enriched genes

Top 20 genes
GeneID	Gene Rank
TIM13	10142
ATOEP16-3	10057
TIM10	9757
TIM9	9751
TOM9-1	9749
TIM22-1	9614
TIM23-1	9479
TOM9-2	9213
OXA1L	9198
AT3G25120	9150
TIM22-3	8277
TOM40-1	8204
TOM20-2	8097
TIM8	7678
MTX1	7174
TOM20-3	6996
OEP164	6675
TIM17-1	4593
TIM22-2	4305
TIM23-2	3185

Click HERE to show all gene set members

All member genes
GeneID	Gene Rank
TIM13	10142
ATOEP16-3	10057
TIM10	9757
TIM9	9751
TOM9-1	9749
TIM22-1	9614
TIM23-1	9479
TOM9-2	9213
OXA1L	9198
AT3G25120	9150
TIM22-3	8277
TOM40-1	8204
TOM20-2	8097
TIM8	7678
MTX1	7174
TOM20-3	6996
OEP164	6675
TIM17-1	4593
TIM22-2	4305
TIM23-2	3185
MPPA2	3155
MPPBETA	3037
AT1G51980	1952
TIM17-3	-1936
TOM20-4	-4197
TIM17-2	-4950
TOM20-1	-5466
HP30-2	-6449
ALB3L3	-6861
HP30-1	-7478
TIM44-2	-9882

RNA_REGULATION_OF_TRANSCRIPTION_C2C2(ZN)_DOF_ZINC_FINGER_FAMILY

RNA_REGULATION_OF_TRANSCRIPTION_C2C2(ZN)_DOF_ZINC_FINGER_FAMILY
	163
set	RNA_REGULATION_OF_TRANSCRIPTION_C2C2(ZN)_DOF_ZINC_FINGER_FAMILY
setSize	31
pANOVA	0.000211
s.dist	-0.385
p.adjustANOVA	0.00173

Top enriched genes

Top 20 genes
GeneID	Gene Rank
CDF5	-10244
DOF2.5	-10234
CDF3	-10206
AT1G26790	-10130
DOF5.3	-9004
DOF4.6	-8803
DOF2.2	-8739
DOF5.7	-8559
DOF5.4	-8469
OBP3	-8160
DOF1.7	-7889
CDF1	-7798
AT1G28310	-7689
DOF2.4	-7615
DOF1.6	-7553
DAG1	-7357
CDF2	-5982
OBP2	-5515
DOF5.1	-5219
DOF2.1	-4297

Click HERE to show all gene set members

All member genes
GeneID	Gene Rank
CDF5	-10244
DOF2.5	-10234
CDF3	-10206
AT1G26790	-10130
DOF5.3	-9004
DOF4.6	-8803
DOF2.2	-8739
DOF5.7	-8559
DOF5.4	-8469
OBP3	-8160
DOF1.7	-7889
CDF1	-7798
AT1G28310	-7689
DOF2.4	-7615
DOF1.6	-7553
DAG1	-7357
CDF2	-5982
OBP2	-5515
DOF5.1	-5219
DOF2.1	-4297
DOF3.1	-3517
DOF1.8	-2990
DOF3.4	-1828
DOF5.6	-879
DOF4.7	1347
DOF4.1	3644
DOF3.2	4871
MEE47	5424
DOF5.8	7851
DOF1.5	9657
CDF4	10060

MITOCHONDRIAL_ELECTRON_TRANSPORT_/_ATP_SYNTHESIS_F1-ATPASE

MITOCHONDRIAL_ELECTRON_TRANSPORT_/_ATP_SYNTHESIS_F1-ATPASE
	75
set	MITOCHONDRIAL_ELECTRON_TRANSPORT_/_ATP_SYNTHESIS_F1-ATPASE
setSize	20
pANOVA	0.00303
s.dist	0.383
p.adjustANOVA	0.015

Top enriched genes

Top 20 genes
GeneID	Gene Rank
ATP1	9723
AT5G08690	9401
AT2G07698	8310
ATPC	7701
AT5G08680	7659
AT5G08670	6802
ATP6-1	6127
AT4G29480	6089
AT2G19680	5906
AT1G51650	5372
YMF19	4934
AT5G60730	4456
AT4G26210	4408
ORF25	4250
ATP5	2494
AT5G47030	424
AT5G12420	-2722
ATP9	-2880
ATPQ	-3806
AT3G46430	-7732

Click HERE to show all gene set members

All member genes
GeneID	Gene Rank
ATP1	9723
AT5G08690	9401
AT2G07698	8310
ATPC	7701
AT5G08680	7659
AT5G08670	6802
ATP6-1	6127
AT4G29480	6089
AT2G19680	5906
AT1G51650	5372
YMF19	4934
AT5G60730	4456
AT4G26210	4408
ORF25	4250
ATP5	2494
AT5G47030	424
AT5G12420	-2722
ATP9	-2880
ATPQ	-3806
AT3G46430	-7732

MINOR_CHO_METABOLISM_CALLOSE

MINOR_CHO_METABOLISM_CALLOSE
	51
set	MINOR_CHO_METABOLISM_CALLOSE
setSize	13
pANOVA	0.0169
s.dist	-0.383
p.adjustANOVA	0.0559

Top enriched genes

Top 20 genes
GeneID	Gene Rank
CALS7	-9175
CALS4	-7910
CALS8	-7724
AT3G14780	-7674
CALS2	-6744
CALS6	-6488
CALS1	-6251
PDCB1	-5810
CALS3	-3204
ATGSL10	-1254
CALS10	602
CALS11	4496
CALS12	4562

Click HERE to show all gene set members

All member genes
GeneID	Gene Rank
CALS7	-9175
CALS4	-7910
CALS8	-7724
AT3G14780	-7674
CALS2	-6744
CALS6	-6488
CALS1	-6251
PDCB1	-5810
CALS3	-3204
ATGSL10	-1254
CALS10	602
CALS11	4496
CALS12	4562

RNA_REGULATION_OF_TRANSCRIPTION_CHROMATIN_REMODELING_FACTORS

RNA_REGULATION_OF_TRANSCRIPTION_CHROMATIN_REMODELING_FACTORS
	168
set	RNA_REGULATION_OF_TRANSCRIPTION_CHROMATIN_REMODELING_FACTORS
setSize	35
pANOVA	0.000108
s.dist	-0.378
p.adjustANOVA	0.00105

Top enriched genes

Top 20 genes
GeneID	Gene Rank
PIE1	-10163
BRM	-9807
ATRX	-9771
MOM	-9643
SWI3C	-9195
CHR11	-8983
CHB3	-8964
CHR28	-8046
CHR12	-7944
AT1G49520	-7861
AT1G11100	-7561
AT2G40770	-7555
RAD5	-7080
AT3G54460	-6312
CHR10	-6127
CHR23	-5921
AT1G05120	-5512
CHR24	-5380
CHR8	-5135
CHR27	-5088

Click HERE to show all gene set members

All member genes
GeneID	Gene Rank
PIE1	-10163
BRM	-9807
ATRX	-9771
MOM	-9643
SWI3C	-9195
CHR11	-8983
CHB3	-8964
CHR28	-8046
CHR12	-7944
AT1G49520	-7861
AT1G11100	-7561
AT2G40770	-7555
RAD5	-7080
AT3G54460	-6312
CHR10	-6127
CHR23	-5921
AT1G05120	-5512
CHR24	-5380
CHR8	-5135
CHR27	-5088
CHR18	-4612
EBS	-4513
CLSY3	-3681
EDA16	-2934
RGD3	-2603
SWI3B	-2518
DDM1	-2118
CLSY4	-1734
SWI3A	-1219
BSH	3317
CHC1	6153
DRD1	6188
AT5G05130	6472
AT5G07810	7468
CLSY2	8641

PROTEIN_SYNTHESIS_RIBOSOMAL_PROTEIN_EUKARYOTIC_60S_SUBUNIT_L34

PROTEIN_SYNTHESIS_RIBOSOMAL_PROTEIN_EUKARYOTIC_60S_SUBUNIT_L34
	124
set	PROTEIN_SYNTHESIS_RIBOSOMAL_PROTEIN_EUKARYOTIC_60S_SUBUNIT_L34
setSize	10
pANOVA	0.0415
s.dist	0.372
p.adjustANOVA	0.116

Top enriched genes

Top 20 genes
GeneID	Gene Rank
RPL34C	9986
AT3G01175	9950
AT3G01170	8829
AT5G15260	5811
RPL34A	4601
AT3G20260	3921
RPL34B	3652
AT3G06180	3137
AT1G73850	-5820
AT5G39785	-6683

Click HERE to show all gene set members

All member genes
GeneID	Gene Rank
RPL34C	9986
AT3G01175	9950
AT3G01170	8829
AT5G15260	5811
RPL34A	4601
AT3G20260	3921
RPL34B	3652
AT3G06180	3137
AT1G73850	-5820
AT5G39785	-6683

LIPID_METABOLISM_PHOSPHOLIPID_SYNTHESIS

LIPID_METABOLISM_PHOSPHOLIPID_SYNTHESIS
	48
set	LIPID_METABOLISM_PHOSPHOLIPID_SYNTHESIS
setSize	16
pANOVA	0.0102
s.dist	0.371
p.adjustANOVA	0.0395

Top enriched genes

Top 20 genes
GeneID	Gene Rank
ATGPAT3	9425
CLS	8416
GPAT4	8170
GPAT7	7944
GPAT5	7362
GPAT1	7320
GPAT8	6774
NMT1	6367
LCKB2	6108
NMT2	3016
PGPS1	1259
GPAT2	1056
AT1G15110	-381
AT3G05510	-4030
GPAT6	-4471
AT1G73600	-4792

Click HERE to show all gene set members

All member genes
GeneID	Gene Rank
ATGPAT3	9425
CLS	8416
GPAT4	8170
GPAT7	7944
GPAT5	7362
GPAT1	7320
GPAT8	6774
NMT1	6367
LCKB2	6108
NMT2	3016
PGPS1	1259
GPAT2	1056
AT1G15110	-381
AT3G05510	-4030
GPAT6	-4471
AT1G73600	-4792

SIGNALLING_RECEPTOR_KINASES_DUF_26

SIGNALLING_RECEPTOR_KINASES_DUF_26
	216
set	SIGNALLING_RECEPTOR_KINASES_DUF_26
setSize	39
pANOVA	1e-04
s.dist	-0.36
p.adjustANOVA	0.00101

Top enriched genes

Top 20 genes
GeneID	Gene Rank
CRK21	-10023
CRK24	-9799
CRK5	-9737
CRK14	-9723
CRK34	-9548
CRK18	-8618
CRK27	-8142
CRK10	-8133
CRK41	-7725
CRK30	-7071
CRK19	-6884
CRRSP9	-6880
CRK33	-6805
CRK16	-6572
CRRSP12	-6182
CRK28	-5913
CRK40	-5420
AT1G70740	-5075
CRRSP11	-4779
CRK15	-4708

Click HERE to show all gene set members

All member genes
GeneID	Gene Rank
CRK21	-10023
CRK24	-9799
CRK5	-9737
CRK14	-9723
CRK34	-9548
CRK18	-8618
CRK27	-8142
CRK10	-8133
CRK41	-7725
CRK30	-7071
CRK19	-6884
CRRSP9	-6880
CRK33	-6805
CRK16	-6572
CRRSP12	-6182
CRK28	-5913
CRK40	-5420
AT1G70740	-5075
CRRSP11	-4779
CRK15	-4708
CRK25	-4303
CRK26	-4300
CRK3	-4167
EMB1290	-2901
CRK7	-2600
CRK36	-2330
AT4G00960	-2106
CRK29	-1916
AT4G11890	-1856
CRK11	-1360
CRK8	-547
CRK6	-163
CRK22	634
CRK31	2730
CRK42	3004
CRK4	3347
CRK2	3532
CRK13	4764
CRK39	9890

TRANSPORT_CALCIUM

TRANSPORT_CALCIUM
	246
set	TRANSPORT_CALCIUM
setSize	21
pANOVA	0.0047
s.dist	0.356
p.adjustANOVA	0.0216

Top enriched genes

Top 20 genes
GeneID	Gene Rank
CAX3	9157
TPC1	8378
CCX5	8102
CCX2	7893
CCX1	7232
ECA1	6830
ACA1	6397
ECA4	5842
EAAC	5685
ACA8	4605
GRXS16	4448
CAX1	4029
CAX2	3744
CCX3	3388
CAX4	2194
ECA2	2124
GRXS14	679
ECA3	-608
AT1G54110	-2702
CAX5	-3454

Click HERE to show all gene set members

All member genes
GeneID	Gene Rank
CAX3	9157
TPC1	8378
CCX5	8102
CCX2	7893
CCX1	7232
ECA1	6830
ACA1	6397
ECA4	5842
EAAC	5685
ACA8	4605
GRXS16	4448
CAX1	4029
CAX2	3744
CCX3	3388
CAX4	2194
ECA2	2124
GRXS14	679
ECA3	-608
AT1G54110	-2702
CAX5	-3454
CXIP4	-8947

TRANSPORT_NUCLEOTIDES

TRANSPORT_NUCLEOTIDES
	254
set	TRANSPORT_NUCLEOTIDES
setSize	19
pANOVA	0.0074
s.dist	-0.355
p.adjustANOVA	0.0318

Top enriched genes

Top 20 genes
GeneID	Gene Rank
PUP21	-9879
PUP10	-8510
PUP7	-7449
NCS1	-6838
ATUPS3	-6467
PUP1	-6349
PUP13	-6166
PUP4	-5053
AT1G34470	-4893
PUP2	-4567
PUP14	-4194
ATPUP5	-3834
PUP18	-3250
PUP23	-2605
AT3G23870	-2482
PUP16	-271
ATPUP12	1640
PUP17	3797
PUP11	6006

Click HERE to show all gene set members

All member genes
GeneID	Gene Rank
PUP21	-9879
PUP10	-8510
PUP7	-7449
NCS1	-6838
ATUPS3	-6467
PUP1	-6349
PUP13	-6166
PUP4	-5053
AT1G34470	-4893
PUP2	-4567
PUP14	-4194
ATPUP5	-3834
PUP18	-3250
PUP23	-2605
AT3G23870	-2482
PUP16	-271
ATPUP12	1640
PUP17	3797
PUP11	6006

RNA_REGULATION_OF_TRANSCRIPTION_MADS_BOX_TRANSCRIPTION_FACTOR_FAMILY

RNA_REGULATION_OF_TRANSCRIPTION_MADS_BOX_TRANSCRIPTION_FACTOR_FAMILY
	178
set	RNA_REGULATION_OF_TRANSCRIPTION_MADS_BOX_TRANSCRIPTION_FACTOR_FAMILY
setSize	28
pANOVA	0.00122
s.dist	-0.353
p.adjustANOVA	0.00695

Top enriched genes

Top 20 genes
GeneID	Gene Rank
SOC1	-10242
ANR1	-10143
AGL71	-10031
AGL42	-9957
AGL19	-8799
AGL16	-8445
AGL21	-8113
AGL31	-8096
AGL65	-7640
AT5G49420	-5928
AGL12	-5850
AGL87	-4891
MAF3	-4701
AGL24	-4478
AGL17	-3960
AGL14	-3546
AGL3	-3110
SEP3	-2643
AGL79	-2140
AGL62	-1670

Click HERE to show all gene set members

All member genes
GeneID	Gene Rank
SOC1	-10242
ANR1	-10143
AGL71	-10031
AGL42	-9957
AGL19	-8799
AGL16	-8445
AGL21	-8113
AGL31	-8096
AGL65	-7640
AT5G49420	-5928
AGL12	-5850
AGL87	-4891
MAF3	-4701
AGL24	-4478
AGL17	-3960
AGL14	-3546
AGL3	-3110
SEP3	-2643
AGL79	-2140
AGL62	-1670
AT3G49400	-709
AGL80	-556
AGL102	29
FLC	859
MAF5	2628
MAF1	4301
AGL18	6446
SEP1	6782

RNA_REGULATION_OF_TRANSCRIPTION_GLOBAL_TRANSCRIPTION_FACTOR_GROUP

RNA_REGULATION_OF_TRANSCRIPTION_GLOBAL_TRANSCRIPTION_FACTOR_GROUP
	172
set	RNA_REGULATION_OF_TRANSCRIPTION_GLOBAL_TRANSCRIPTION_FACTOR_GROUP
setSize	13
pANOVA	0.0278
s.dist	-0.352
p.adjustANOVA	0.0828

Top enriched genes

Top 20 genes
GeneID	Gene Rank
GTE4	-9777
SPT6	-9680
GTE6	-9306
GTE8	-7318
GTE11	-6117
SPT16	-6075
GTE12	-3488
GTE3	-3056
GTA02	-2899
BET9	816
GTE5	967
GTE1	3614
GTE7	3817

Click HERE to show all gene set members

All member genes
GeneID	Gene Rank
GTE4	-9777
SPT6	-9680
GTE6	-9306
GTE8	-7318
GTE11	-6117
SPT16	-6075
GTE12	-3488
GTE3	-3056
GTA02	-2899
BET9	816
GTE5	967
GTE1	3614
GTE7	3817

SIGNALLING_PHOSPHINOSITIDES_PHOSPHATIDYLINOSITOL-4-PHOSPHATE_5-KINASE

SIGNALLING_PHOSPHINOSITIDES_PHOSPHATIDYLINOSITOL-4-PHOSPHATE_5-KINASE
	214
set	SIGNALLING_PHOSPHINOSITIDES_PHOSPHATIDYLINOSITOL-4-PHOSPHATE_5-KINASE
setSize	18
pANOVA	0.00984
s.dist	-0.351
p.adjustANOVA	0.0385

Top enriched genes

Top 20 genes
GeneID	Gene Rank
ATPIPK10	-9813
PIP5K7	-9731
PIP5K5	-8492
AT4G17080	-7882
PIP5K3	-7363
PIP5K4	-6986
AT1G77660	-5405
PIP5K6	-4718
AT2G35170	-4304
PIP5K9	-2602
FAB1C	-2525
FAB1D	-2014
PIP5K2	-1703
FAB1B	-865
AT1G60890	1181
FAB1A	1353
AT1G21920	1618
PIP5K1	3284

Click HERE to show all gene set members

All member genes
GeneID	Gene Rank
ATPIPK10	-9813
PIP5K7	-9731
PIP5K5	-8492
AT4G17080	-7882
PIP5K3	-7363
PIP5K4	-6986
AT1G77660	-5405
PIP5K6	-4718
AT2G35170	-4304
PIP5K9	-2602
FAB1C	-2525
FAB1D	-2014
PIP5K2	-1703
FAB1B	-865
AT1G60890	1181
FAB1A	1353
AT1G21920	1618
PIP5K1	3284

NOT_ASSIGNED_NO_ONTOLOGY_AGENET_DOMAIN-CONTAINING_PROTEIN

NOT_ASSIGNED_NO_ONTOLOGY_AGENET_DOMAIN-CONTAINING_PROTEIN
	79
set	NOT_ASSIGNED_NO_ONTOLOGY_AGENET_DOMAIN-CONTAINING_PROTEIN
setSize	16
pANOVA	0.0152
s.dist	-0.351
p.adjustANOVA	0.0516

Top enriched genes

Top 20 genes
GeneID	Gene Rank
DUF8	-9857
DUF1	-9600
ATG2484-1	-9173
DUF7	-7810
DUF6	-7345
AT2G25590	-6525
DUF2	-6468
AT5G52070	-5191
DUF3	-2777
ATDUF10	-2344
AT4G32440	-2019
AT1G09320	-935
AT5G42670	1939
AT3G06520	2308
DUF9	2718
AT5G20030	3682

Click HERE to show all gene set members

All member genes
GeneID	Gene Rank
DUF8	-9857
DUF1	-9600
ATG2484-1	-9173
DUF7	-7810
DUF6	-7345
AT2G25590	-6525
DUF2	-6468
AT5G52070	-5191
DUF3	-2777
ATDUF10	-2344
AT4G32440	-2019
AT1G09320	-935
AT5G42670	1939
AT3G06520	2308
DUF9	2718
AT5G20030	3682

MITOCHONDRIAL_ELECTRON_TRANSPORT_/_ATP_SYNTHESIS_NADH-DH_LOCALISATION_NOT_CLEAR

MITOCHONDRIAL_ELECTRON_TRANSPORT_/_ATP_SYNTHESIS_NADH-DH_LOCALISATION_NOT_CLEAR
	76
set	MITOCHONDRIAL_ELECTRON_TRANSPORT_/_ATP_SYNTHESIS_NADH-DH_LOCALISATION_NOT_CLEAR
setSize	33
pANOVA	0.000493
s.dist	0.35
p.adjustANOVA	0.00331

Top enriched genes

Top 20 genes
GeneID	Gene Rank
AT1G79010	9828
AT5G47890	9593
AT2G02050	9549
DER2.1	9325
AT1G16700	8470
FRO1	7919
AT4G02580	7673
AT3G06310	7434
NAD6	7429
AT5G18800	7378
NAD7	7367
NAD2B	7293
EMB1467	6811
NAD9	6669
NAD4	6600
AT2G20360	6001
NAD5C	5398
AT5G52840	3989
AT2G07751	3740
CI51	3736

Click HERE to show all gene set members

All member genes
GeneID	Gene Rank
AT1G79010	9828
AT5G47890	9593
AT2G02050	9549
DER2.1	9325
AT1G16700	8470
FRO1	7919
AT4G02580	7673
AT3G06310	7434
NAD6	7429
AT5G18800	7378
NAD7	7367
NAD2B	7293
EMB1467	6811
NAD9	6669
NAD4	6600
AT2G20360	6001
NAD5C	5398
AT5G52840	3989
AT2G07751	3740
CI51	3736
AT3G62790	3689
NAD1B	2454
AT3G03070	1581
NAD2A	1160
NAD5A	441
NAD1C	316
AT3G18410	-89
AT1G49140	-2256
AT2G47690	-4643
AT2G07689	-5701
AT5G11770	-6154
AT4G26965	-7616
AT3G03100	-9557

RNA_REGULATION_OF_TRANSCRIPTION_WRKY_DOMAIN_TRANSCRIPTION_FACTOR_FAMILY

RNA_REGULATION_OF_TRANSCRIPTION_WRKY_DOMAIN_TRANSCRIPTION_FACTOR_FAMILY
	193
set	RNA_REGULATION_OF_TRANSCRIPTION_WRKY_DOMAIN_TRANSCRIPTION_FACTOR_FAMILY
setSize	62
pANOVA	4.82e-06
s.dist	-0.336
p.adjustANOVA	8.42e-05

Top enriched genes

Top 20 genes
GeneID	Gene Rank
WRKY2	-10306
WRKY36	-10056
WRKY33	-10020
WRKY7	-9914
WRKY72	-9845
WRKY47	-9843
WRKY56	-9837
WRKY26	-9664
WRKY3	-9531
WRKY30	-9409
WRKY27	-9238
WRKY41	-9189
WRKY14	-9070
WRKY20	-9026
WRKY35	-8814
WRKY12	-8594
WRKY24	-8529
WRKY44	-8297
WRKY1	-8274
WRKY19	-7936

Click HERE to show all gene set members

All member genes
GeneID	Gene Rank
WRKY2	-10306
WRKY36	-10056
WRKY33	-10020
WRKY7	-9914
WRKY72	-9845
WRKY47	-9843
WRKY56	-9837
WRKY26	-9664
WRKY3	-9531
WRKY30	-9409
WRKY27	-9238
WRKY41	-9189
WRKY14	-9070
WRKY20	-9026
WRKY35	-8814
WRKY12	-8594
WRKY24	-8529
WRKY44	-8297
WRKY1	-8274
WRKY19	-7936
WRKY55	-7926
WRKY8	-7909
WRKY61	-7672
WRKY43	-7642
WRKY71	-7563
WRKY4	-5602
WRKY32	-5553
WRKY57	-5346
WRKY54	-4764
WRKY11	-4207
WRKY13	-3857
WRKY50	-3609
WRKY69	-3521
WRKY6	-3518
POLAR	-2978
WRKY31	-2973
WRKY58	-2871
WRKY25	-2368
WRKY22	-1997
WRKY46	-1709
WRKY48	-1614
WRKY18	-1576
WRKY75	-1438
WRKY42	-1324
WRKY65	-799
WRKY9	-740
WRKY49	-193
WRKY17	-65
WRKY60	64
WRKY53	1283
WRKY51	1481
WRKY15	2943
WRKY59	3115
WRKY29	3997
WRKY70	4022
WRKY28	5127
WRKY74	5360
WRKY45	6104
WRKY39	7641
WRKY21	7958
WRKY40	8045
WRKY23	9430

RNA_REGULATION_OF_TRANSCRIPTION_HB,HOMEOBOX_TRANSCRIPTION_FACTOR_FAMILY

RNA_REGULATION_OF_TRANSCRIPTION_HB,HOMEOBOX_TRANSCRIPTION_FACTOR_FAMILY
	173
set	RNA_REGULATION_OF_TRANSCRIPTION_HB,HOMEOBOX_TRANSCRIPTION_FACTOR_FAMILY
setSize	67
pANOVA	2.19e-06
s.dist	-0.334
p.adjustANOVA	4.41e-05

Top enriched genes

Top 20 genes
GeneID	Gene Rank
BLH3	-10051
BLH4	-9995
RLT1	-9930
BLH2	-9844
HAT9	-9749
KNAT3	-9726
HAT3.1	-9563
BLH10	-9500
BLH5	-9485
WOX4	-9469
KNAT1	-9355
BEL1	-9249
ATH1	-9021
BLH9	-8948
STM	-8919
RLT2	-8345
HAT2	-8132
HAT4	-8065
ATHB-8	-7988
BLH6	-7955

Click HERE to show all gene set members

All member genes
GeneID	Gene Rank
BLH3	-10051
BLH4	-9995
RLT1	-9930
BLH2	-9844
HAT9	-9749
KNAT3	-9726
HAT3.1	-9563
BLH10	-9500
BLH5	-9485
WOX4	-9469
KNAT1	-9355
BEL1	-9249
ATH1	-9021
BLH9	-8948
STM	-8919
RLT2	-8345
HAT2	-8132
HAT4	-8065
ATHB-8	-7988
BLH6	-7955
AT4G03250	-7765
WOX14	-7384
BLH8	-7117
ATHB-20	-6926
ATHB-53	-6462
ATHB-13	-6199
ATHB-17	-6104
BLH7	-5873
HAT5	-5832
BLH1	-5676
ATHB-X	-5637
HDG5	-5434
KNAT7	-5345
ATHB-14	-5143
ATHB-15	-5097
KNAT6	-4358
ATHB-5	-3464
KNAT4	-3437
HDG2	-2867
WOX13	-2635
HAT3	-2616
HDG12	-2133
ATHB-23	-1862
AT3G18380	-1000
ATHB-16	-181
ATHB-9	-128
HB-5	54
ATHB54	134
ATHB-12	287
ATML1	619
HAT7	991
WOX1	1010
BLH11	1168
ATHB-6	1186
ATHB-4	1327
WOX12	1559
HAT1	1646
KNAT2	1776
ATHB-21	4031
ANL2	4467
PDF2	5090
ATHB-7	5152
HDG11	5333
ATHB-51	5788
HDG7	6757
WOX5	7282
WOX11	7309

RNA_REGULATION_OF_TRANSCRIPTION_PHD_FINGER_TRANSCRIPTION_FACTOR

RNA_REGULATION_OF_TRANSCRIPTION_PHD_FINGER_TRANSCRIPTION_FACTOR
	184
set	RNA_REGULATION_OF_TRANSCRIPTION_PHD_FINGER_TRANSCRIPTION_FACTOR
setSize	10
pANOVA	0.0719
s.dist	-0.329
p.adjustANOVA	0.179

Top enriched genes

Top 20 genes
GeneID	Gene Rank
AT3G51120	-8859
AT5G12400	-7966
AT3G53680	-7870
AT1G05380	-6321
AT2G36720	-4667
IDM1	-2281
AT4G14920	-2145
MS1	520
AT5G58610	570
AT1G43770	4148

Click HERE to show all gene set members

All member genes
GeneID	Gene Rank
AT3G51120	-8859
AT5G12400	-7966
AT3G53680	-7870
AT1G05380	-6321
AT2G36720	-4667
IDM1	-2281
AT4G14920	-2145
MS1	520
AT5G58610	570
AT1G43770	4148

RNA_REGULATION_OF_TRANSCRIPTION_C2C2(ZN)_CO-LIKE,_CONSTANS-LIKE_ZINC_FINGER_FAMILY

RNA_REGULATION_OF_TRANSCRIPTION_C2C2(ZN)_CO-LIKE,_CONSTANS-LIKE_ZINC_FINGER_FAMILY
	162
set	RNA_REGULATION_OF_TRANSCRIPTION_C2C2(ZN)_CO-LIKE,_CONSTANS-LIKE_ZINC_FINGER_FAMILY
setSize	24
pANOVA	0.00564
s.dist	-0.326
p.adjustANOVA	0.0253

Top enriched genes

Top 20 genes
GeneID	Gene Rank
COL5	-10399
AT4G27310	-10279
COL7	-10052
BBX32	-9892
AT5G54470	-9785
BBX21	-9716
BBX24	-9180
BBX25	-9112
COL4	-9095
MIP1B	-8967
AT4G38960	-8841
BBX18	-8375
LZF1	-3276
AT1G68190	-3156
COL13	-2186
COL6	740
COL14	921
COL16	1879
COL15	2585
AT1G49130	3072

Click HERE to show all gene set members

All member genes
GeneID	Gene Rank
COL5	-10399
AT4G27310	-10279
COL7	-10052
BBX32	-9892
AT5G54470	-9785
BBX21	-9716
BBX24	-9180
BBX25	-9112
COL4	-9095
MIP1B	-8967
AT4G38960	-8841
BBX18	-8375
LZF1	-3276
AT1G68190	-3156
COL13	-2186
COL6	740
COL14	921
COL16	1879
COL15	2585
AT1G49130	3072
COL10	5597
COL3	6308
BBX20	8248
COL9	9885

Here is the session info with all the versions of packages used.

sessionInfo()

## R version 4.0.3 (2020-10-10)
## Platform: x86_64-pc-linux-gnu (64-bit)
## Running under: Ubuntu 18.04.5 LTS
## 
## Matrix products: default
## BLAS:   /usr/lib/x86_64-linux-gnu/blas/libblas.so.3.7.1
## LAPACK: /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3.7.1
## 
## locale:
##  [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C              
##  [3] LC_TIME=en_US.UTF-8        LC_COLLATE=en_US.UTF-8    
##  [5] LC_MONETARY=en_US.UTF-8    LC_MESSAGES=en_US.UTF-8   
##  [7] LC_PAPER=en_US.UTF-8       LC_NAME=C                 
##  [9] LC_ADDRESS=C               LC_TELEPHONE=C            
## [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C       
## 
## attached base packages:
## [1] parallel  stats4    stats     graphics  grDevices utils     datasets 
## [8] methods   base     
## 
## other attached packages:
##  [1] pkgload_1.1.0               GGally_2.0.0               
##  [3] ggplot2_3.3.2               reshape2_1.4.4             
##  [5] beeswarm_0.2.3              gtools_3.8.2               
##  [7] tibble_3.0.4                dplyr_1.0.2                
##  [9] echarts4r_0.3.3             mitch_1.2.0                
## [11] DESeq2_1.30.0               SummarizedExperiment_1.20.0
## [13] Biobase_2.50.0              MatrixGenerics_1.2.0       
## [15] matrixStats_0.57.0          GenomicRanges_1.42.0       
## [17] GenomeInfoDb_1.26.0         IRanges_2.24.0             
## [19] S4Vectors_0.28.0            BiocGenerics_0.36.0        
## [21] gplots_3.1.0                getDEE2_1.0.0              
## 
## loaded via a namespace (and not attached):
##  [1] bitops_1.0-6           bit64_4.0.5            RColorBrewer_1.1-2    
##  [4] httr_1.4.2             rprojroot_1.3-2        backports_1.2.0       
##  [7] tools_4.0.3            R6_2.5.0               KernSmooth_2.23-18    
## [10] DBI_1.1.0              colorspace_1.4-1       withr_2.3.0           
## [13] htm2txt_2.1.1          tidyselect_1.1.0       gridExtra_2.3         
## [16] bit_4.0.4              compiler_4.0.3         desc_1.2.0            
## [19] DelayedArray_0.16.0    caTools_1.18.0         scales_1.1.1          
## [22] genefilter_1.72.0      stringr_1.4.0          digest_0.6.27         
## [25] rmarkdown_2.5          XVector_0.30.0         pkgconfig_2.0.3       
## [28] htmltools_0.5.0        highr_0.8              fastmap_1.0.1         
## [31] htmlwidgets_1.5.2      rlang_0.4.8            RSQLite_2.2.1         
## [34] shiny_1.5.0            generics_0.1.0         jsonlite_1.7.1        
## [37] BiocParallel_1.24.0    RCurl_1.98-1.2         magrittr_1.5          
## [40] GenomeInfoDbData_1.2.4 Matrix_1.2-18          Rcpp_1.0.5            
## [43] munsell_0.5.0          lifecycle_0.2.0        stringi_1.5.3         
## [46] yaml_2.2.1             MASS_7.3-53            zlibbioc_1.36.0       
## [49] plyr_1.8.6             grid_4.0.3             blob_1.2.1            
## [52] promises_1.1.1         crayon_1.3.4           lattice_0.20-41       
## [55] splines_4.0.3          annotate_1.68.0        locfit_1.5-9.4        
## [58] knitr_1.30             pillar_1.4.6           tcltk_4.0.3           
## [61] geneplotter_1.68.0     XML_3.99-0.5           glue_1.4.2            
## [64] evaluate_0.14          vctrs_0.3.4            httpuv_1.5.4          
## [67] testthat_3.0.0         gtable_0.3.0           purrr_0.3.4           
## [70] assertthat_0.2.1       reshape_0.8.8          xfun_0.19             
## [73] mime_0.9               xtable_1.8-4           later_1.1.0.1         
## [76] survival_3.2-7         pbmcapply_1.5.0        AnnotationDbi_1.52.0  
## [79] memoise_1.1.0          ellipsis_0.3.1

END of report

Mitch Report

Antony Kaspi & Mark Ziemann

Background

Input profiles

Input genesets

Differential pathway expression

Interactive enrichment scatterplot

Results table

Results (complete table)

Detailed Gene set reports