Mitch Report

date generated: 2020-11-05

Background

Mitch performs unidimensional and multidimensional gene set enrichment analysis. The concept behind this dates to work by Cox and Mann (https://doi.org/10.1186/1471-2105-13-S16-S12). This implementation is suited to R based workflows of multi-omics datasets. This software was developed by Antony Kaspi and Mark Ziemann. Learn more about Mitch at the website: https://github.com/markziemann/Mitch

Input profiles

Here is the first few lines of the input profile.

##                      x
## 1MMP        -1.0893900
## 2-Cys       -0.4489003
## 2A6         -0.6542785
## 2MMP        -1.0838807
## 3AT1         0.3181019
## 3BETAHSD/D1  0.4527769

Here are some metrics about the input data profile:

Profile metrics
	Profile metrics
num_genesets	959
num_genes_in_profile	20803
duplicated_genes_present	0
num_profile_genes_in_sets	20196
num_profile_genes_not_in_sets	607

Here is a plot of the input profiles. Note the dynamic ranges.

Here is the contour plot of the profile including all detected genes.

Input genesets

Here are some metrics about the gene sets used: GMT file of genesets: ../ref/Ath_AGI_LOCUS_TAIR10_Aug2012.txt.gmt

Gene sets metrics
	Gene sets metrics
num_genesets	959
num_genesets_excluded	696
num_genesets_included	263

Differential pathway expression

Interactive enrichment scatterplot

Significance is calculated by -log10(p-value). All points shown are FDR<0.05.

Significance is calculated by -log10(p-value). Top N sets shown irrespective of FDR.

Results table

Top N= 50 gene sets

set	setSize	pANOVA	s.dist	p.adjustANOVA
MITOCHONDRIAL ELECTRON TRANSPORT / ATP SYNTHESIS F1-ATPASE	20	4.08e-07	0.654	2.14e-05
CELL WALL CELL WALL PROTEINS AGPS AGP	40	3.10e-10	0.575	2.72e-08
DNA SYNTHESIS/CHROMATIN STRUCTURE HISTONE CORE H2A	13	3.42e-04	0.574	4.74e-03
CELL WALL CELLULOSE SYNTHESIS	14	6.24e-04	0.528	7.46e-03
RNA REGULATION OF TRANSCRIPTION AUX/IAA FAMILY	25	6.21e-06	0.522	2.04e-04
MITOCHONDRIAL ELECTRON TRANSPORT / ATP SYNTHESIS NADH-DH LOCALISATION NOT CLEAR	33	5.44e-07	0.504	2.39e-05
REDOX THIOREDOXIN PDIL	13	1.88e-03	0.498	1.50e-02
SIGNALLING RECEPTOR KINASES CATHARANTHUS ROSEUS-LIKE RLK1	14	1.39e-03	-0.494	1.30e-02
NOT ASSIGNED NO ONTOLOGY AGENET DOMAIN-CONTAINING PROTEIN	16	6.62e-04	-0.492	7.57e-03
MITOCHONDRIAL ELECTRON TRANSPORT / ATP SYNTHESIS CYTOCHROME C REDUCTASE	10	8.40e-03	0.481	4.70e-02
PROTEIN TARGETING SECRETORY PATHWAY ER	14	2.81e-03	0.461	2.11e-02
RNA REGULATION OF TRANSCRIPTION AS2,LATERAL ORGAN BOUNDARIES GENE FAMILY	23	1.35e-04	0.460	2.73e-03
STRESS BIOTIC PR-PROTEINS PLANT DEFENSINS	13	4.13e-03	0.459	2.89e-02
MITOCHONDRIAL ELECTRON TRANSPORT / ATP SYNTHESIS CYTOCHROME C	10	1.30e-02	0.453	6.46e-02
TRANSPORT MAJOR INTRINSIC PROTEINS PIP	13	4.77e-03	0.452	2.99e-02
SIGNALLING 14-3-3 PROTEINS	11	9.98e-03	0.449	5.25e-02
LIPID METABOLISM LIPID DEGRADATION LYSOPHOSPHOLIPASES PHOSPHOLIPASE D	12	7.76e-03	-0.444	4.44e-02
PROTEIN TARGETING CHLOROPLAST	36	7.80e-06	-0.430	2.28e-04
PROTEIN SYNTHESIS RIBOSOME BIOGENESIS PRE-RRNA PROCESSING AND MODIFICATIONS SNORNPS	13	8.61e-03	0.421	4.72e-02
RNA REGULATION OF TRANSCRIPTION NAC DOMAIN TRANSCRIPTION FACTOR FAMILY	16	4.70e-03	-0.408	2.99e-02
SIGNALLING RECEPTOR KINASES WALL ASSOCIATED KINASE	22	1.50e-03	-0.391	1.36e-02
HORMONE METABOLISM JASMONATE INDUCED-REGULATED-RESPONSIVE-ACTIVATED	13	1.53e-02	0.388	7.32e-02
RNA REGULATION OF TRANSCRIPTION C2C2(ZN) GATA TRANSCRIPTION FACTOR FAMILY	27	5.43e-04	0.385	6.80e-03
NOT ASSIGNED NO ONTOLOGY DC1 DOMAIN CONTAINING PROTEIN	102	2.12e-11	-0.384	2.79e-09
PS LIGHTREACTION CYCLIC ELECTRON FLOW-CHLORORESPIRATION	12	2.38e-02	0.377	9.64e-02
RNA PROCESSING RNA HELICASE	33	2.06e-04	-0.373	3.23e-03
CELL WALL DEGRADATION MANNAN-XYLOSE-ARABINOSE-FUCOSE	16	1.16e-02	-0.364	5.99e-02
NOT ASSIGNED NO ONTOLOGY PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN	425	7.36e-38	-0.363	1.93e-35
RNA REGULATION OF TRANSCRIPTION CHROMATIN REMODELING FACTORS	35	2.09e-04	-0.362	3.23e-03
MITOCHONDRIAL ELECTRON TRANSPORT / ATP SYNTHESIS CYTOCHROME C OXIDASE	25	1.88e-03	0.359	1.50e-02
PROTEIN DEGRADATION AUTOPHAGY	22	4.17e-03	-0.353	2.89e-02
PS LIGHTREACTION NADH DH	12	3.91e-02	0.344	1.34e-01
LIPID METABOLISM EXOTICS(STEROIDS, SQUALENE ETC)	16	1.91e-02	0.338	8.50e-02
SIGNALLING PHOSPHINOSITIDES	15	2.37e-02	-0.337	9.64e-02
MISC GLUCO-, GALACTO- AND MANNOSIDASES BETA-GALACTOSIDASE	14	3.00e-02	-0.335	1.13e-01
NUCLEOTIDE METABOLISM SALVAGE NUDIX HYDROLASES	24	4.60e-03	0.334	2.99e-02
TRANSPORT METABOLITE TRANSPORTERS AT THE ENVELOPE MEMBRANE	26	3.56e-03	0.330	2.60e-02
PROTEIN POSTRANSLATIONAL MODIFICATION KINASE RECEPTOR LIKE CYTOPLASMATIC KINASE IX	12	4.79e-02	-0.330	1.55e-01
PROTEIN TARGETING MITOCHONDRIA	31	1.63e-03	0.327	1.43e-02
PROTEIN DEGRADATION METALLOPROTEASE	38	5.11e-04	-0.326	6.73e-03
RNA REGULATION OF TRANSCRIPTION PHD FINGER TRANSCRIPTION FACTOR	10	7.69e-02	-0.323	2.10e-01
MISC PLASTOCYANIN-LIKE	24	6.95e-03	0.318	4.06e-02
RNA REGULATION OF TRANSCRIPTION HISTONE ACETYLTRANSFERASES	18	2.21e-02	-0.312	9.59e-02
MISC GLUTATHIONE S TRANSFERASES	53	9.51e-05	0.310	2.27e-03
NOT ASSIGNED NO ONTOLOGY GLYCINE RICH PROTEINS	54	1.07e-04	-0.305	2.35e-03
TRANSPORT NUCLEOTIDES	19	2.22e-02	-0.303	9.59e-02
SIGNALLING PHOSPHINOSITIDES PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE	18	2.64e-02	-0.302	1.05e-01
NUCLEOTIDE METABOLISM PHOSPHOTRANSFER AND PYROPHOSPHATASES MISC	11	8.34e-02	0.301	2.17e-01
PROTEIN POSTRANSLATIONAL MODIFICATION KINASE RECEPTOR LIKE CYTOPLASMATIC KINASE VIII	11	8.56e-02	-0.299	2.21e-01
PROTEIN DEGRADATION ASPARTATE PROTEASE	31	4.61e-03	-0.294	2.99e-02

Results (complete table)

Click HERE to show results for all gene sets

Complete results
set	setSize	pANOVA	s.dist	p.adjustANOVA
MITOCHONDRIAL ELECTRON TRANSPORT / ATP SYNTHESIS F1-ATPASE	20	4.08e-07	0.654000	2.14e-05
CELL WALL CELL WALL PROTEINS AGPS AGP	40	3.10e-10	0.575000	2.72e-08
DNA SYNTHESIS/CHROMATIN STRUCTURE HISTONE CORE H2A	13	3.42e-04	0.574000	4.74e-03
CELL WALL CELLULOSE SYNTHESIS	14	6.24e-04	0.528000	7.46e-03
RNA REGULATION OF TRANSCRIPTION AUX/IAA FAMILY	25	6.21e-06	0.522000	2.04e-04
MITOCHONDRIAL ELECTRON TRANSPORT / ATP SYNTHESIS NADH-DH LOCALISATION NOT CLEAR	33	5.44e-07	0.504000	2.39e-05
REDOX THIOREDOXIN PDIL	13	1.88e-03	0.498000	1.50e-02
SIGNALLING RECEPTOR KINASES CATHARANTHUS ROSEUS-LIKE RLK1	14	1.39e-03	-0.494000	1.30e-02
NOT ASSIGNED NO ONTOLOGY AGENET DOMAIN-CONTAINING PROTEIN	16	6.62e-04	-0.492000	7.57e-03
MITOCHONDRIAL ELECTRON TRANSPORT / ATP SYNTHESIS CYTOCHROME C REDUCTASE	10	8.40e-03	0.481000	4.70e-02
PROTEIN TARGETING SECRETORY PATHWAY ER	14	2.81e-03	0.461000	2.11e-02
RNA REGULATION OF TRANSCRIPTION AS2,LATERAL ORGAN BOUNDARIES GENE FAMILY	23	1.35e-04	0.460000	2.73e-03
STRESS BIOTIC PR-PROTEINS PLANT DEFENSINS	13	4.13e-03	0.459000	2.89e-02
MITOCHONDRIAL ELECTRON TRANSPORT / ATP SYNTHESIS CYTOCHROME C	10	1.30e-02	0.453000	6.46e-02
TRANSPORT MAJOR INTRINSIC PROTEINS PIP	13	4.77e-03	0.452000	2.99e-02
SIGNALLING 14-3-3 PROTEINS	11	9.98e-03	0.449000	5.25e-02
LIPID METABOLISM LIPID DEGRADATION LYSOPHOSPHOLIPASES PHOSPHOLIPASE D	12	7.76e-03	-0.444000	4.44e-02
PROTEIN TARGETING CHLOROPLAST	36	7.80e-06	-0.430000	2.28e-04
PROTEIN SYNTHESIS RIBOSOME BIOGENESIS PRE-RRNA PROCESSING AND MODIFICATIONS SNORNPS	13	8.61e-03	0.421000	4.72e-02
RNA REGULATION OF TRANSCRIPTION NAC DOMAIN TRANSCRIPTION FACTOR FAMILY	16	4.70e-03	-0.408000	2.99e-02
SIGNALLING RECEPTOR KINASES WALL ASSOCIATED KINASE	22	1.50e-03	-0.391000	1.36e-02
HORMONE METABOLISM JASMONATE INDUCED-REGULATED-RESPONSIVE-ACTIVATED	13	1.53e-02	0.388000	7.32e-02
RNA REGULATION OF TRANSCRIPTION C2C2(ZN) GATA TRANSCRIPTION FACTOR FAMILY	27	5.43e-04	0.385000	6.80e-03
NOT ASSIGNED NO ONTOLOGY DC1 DOMAIN CONTAINING PROTEIN	102	2.12e-11	-0.384000	2.79e-09
PS LIGHTREACTION CYCLIC ELECTRON FLOW-CHLORORESPIRATION	12	2.38e-02	0.377000	9.64e-02
RNA PROCESSING RNA HELICASE	33	2.06e-04	-0.373000	3.23e-03
CELL WALL DEGRADATION MANNAN-XYLOSE-ARABINOSE-FUCOSE	16	1.16e-02	-0.364000	5.99e-02
NOT ASSIGNED NO ONTOLOGY PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN	425	7.36e-38	-0.363000	1.93e-35
RNA REGULATION OF TRANSCRIPTION CHROMATIN REMODELING FACTORS	35	2.09e-04	-0.362000	3.23e-03
MITOCHONDRIAL ELECTRON TRANSPORT / ATP SYNTHESIS CYTOCHROME C OXIDASE	25	1.88e-03	0.359000	1.50e-02
PROTEIN DEGRADATION AUTOPHAGY	22	4.17e-03	-0.353000	2.89e-02
PS LIGHTREACTION NADH DH	12	3.91e-02	0.344000	1.34e-01
LIPID METABOLISM EXOTICS(STEROIDS, SQUALENE ETC)	16	1.91e-02	0.338000	8.50e-02
SIGNALLING PHOSPHINOSITIDES	15	2.37e-02	-0.337000	9.64e-02
MISC GLUCO-, GALACTO- AND MANNOSIDASES BETA-GALACTOSIDASE	14	3.00e-02	-0.335000	1.13e-01
NUCLEOTIDE METABOLISM SALVAGE NUDIX HYDROLASES	24	4.60e-03	0.334000	2.99e-02
TRANSPORT METABOLITE TRANSPORTERS AT THE ENVELOPE MEMBRANE	26	3.56e-03	0.330000	2.60e-02
PROTEIN POSTRANSLATIONAL MODIFICATION KINASE RECEPTOR LIKE CYTOPLASMATIC KINASE IX	12	4.79e-02	-0.330000	1.55e-01
PROTEIN TARGETING MITOCHONDRIA	31	1.63e-03	0.327000	1.43e-02
PROTEIN DEGRADATION METALLOPROTEASE	38	5.11e-04	-0.326000	6.73e-03
RNA REGULATION OF TRANSCRIPTION PHD FINGER TRANSCRIPTION FACTOR	10	7.69e-02	-0.323000	2.10e-01
MISC PLASTOCYANIN-LIKE	24	6.95e-03	0.318000	4.06e-02
RNA REGULATION OF TRANSCRIPTION HISTONE ACETYLTRANSFERASES	18	2.21e-02	-0.312000	9.59e-02
MISC GLUTATHIONE S TRANSFERASES	53	9.51e-05	0.310000	2.27e-03
NOT ASSIGNED NO ONTOLOGY GLYCINE RICH PROTEINS	54	1.07e-04	-0.305000	2.35e-03
TRANSPORT NUCLEOTIDES	19	2.22e-02	-0.303000	9.59e-02
SIGNALLING PHOSPHINOSITIDES PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE	18	2.64e-02	-0.302000	1.05e-01
NUCLEOTIDE METABOLISM PHOSPHOTRANSFER AND PYROPHOSPHATASES MISC	11	8.34e-02	0.301000	2.17e-01
PROTEIN POSTRANSLATIONAL MODIFICATION KINASE RECEPTOR LIKE CYTOPLASMATIC KINASE VIII	11	8.56e-02	-0.299000	2.21e-01
PROTEIN DEGRADATION ASPARTATE PROTEASE	31	4.61e-03	-0.294000	2.99e-02
SECONDARY METABOLISM FLAVONOIDS DIHYDROFLAVONOLS	16	4.29e-02	0.292000	1.45e-01
LIPID METABOLISM FA SYNTHESIS AND FA ELONGATION ACYL COA LIGASE	19	2.79e-02	-0.291000	1.08e-01
RNA REGULATION OF TRANSCRIPTION GLOBAL TRANSCRIPTION FACTOR GROUP	13	6.98e-02	-0.290000	1.97e-01
RNA REGULATION OF TRANSCRIPTION JUMONJI FAMILY	13	7.23e-02	-0.288000	2.02e-01
SIGNALLING RECEPTOR KINASES PROLINE EXTENSIN LIKE	15	5.44e-02	-0.287000	1.68e-01
CELL CYCLE PEPTIDYLPROLYL ISOMERASE	32	5.96e-03	0.281000	3.64e-02
PS LIGHTREACTION PHOTOSYSTEM II PSII POLYPEPTIDE SUBUNITS	44	1.29e-03	0.280000	1.26e-02
CELL WALL MODIFICATION	55	3.38e-04	0.279000	4.74e-03
HORMONE METABOLISM ETHYLENE SIGNAL TRANSDUCTION	30	8.80e-03	-0.276000	4.73e-02
HORMONE METABOLISM ABSCISIC ACID SYNTHESIS-DEGRADATION	10	1.32e-01	-0.275000	2.80e-01
RNA REGULATION OF TRANSCRIPTION CCAAT BOX BINDING FACTOR FAMILY, HAP2	10	1.36e-01	-0.272000	2.86e-01
SIGNALLING RECEPTOR KINASES LEUCINE RICH REPEAT X	12	1.08e-01	-0.268000	2.50e-01
RNA REGULATION OF TRANSCRIPTION B3 TRANSCRIPTION FACTOR FAMILY	27	1.63e-02	0.267000	7.49e-02
SIGNALLING RECEPTOR KINASES LEGUME-LECTIN	13	9.66e-02	-0.266000	2.40e-01
RNA REGULATION OF TRANSCRIPTION ARR	16	6.54e-02	0.266000	1.91e-01
MINOR CHO METABOLISM CALLOSE	13	1.05e-01	-0.260000	2.46e-01
PROTEIN POSTRANSLATIONAL MODIFICATION KINASE	22	3.73e-02	-0.256000	1.29e-01
SIGNALLING RECEPTOR KINASES MISC	75	1.51e-04	-0.253000	2.84e-03
BIODEGRADATION OF XENOBIOTICS LACTOYLGLUTATHIONE LYASE	11	1.50e-01	-0.251000	3.01e-01
RNA REGULATION OF TRANSCRIPTION ARF, AUXIN RESPONSE FACTOR FAMILY	16	8.28e-02	-0.250000	2.17e-01
PROTEIN DEGRADATION AAA TYPE	34	1.22e-02	-0.248000	6.18e-02
RNA REGULATION OF TRANSCRIPTION C2C2(ZN) DOF ZINC FINGER FAMILY	32	1.64e-02	0.245000	7.49e-02
TRANSPORT UNSPECIFIED ANIONS	15	1.02e-01	-0.244000	2.44e-01
TRANSPORT CALCIUM	21	5.38e-02	-0.243000	1.68e-01
PROTEIN DEGRADATION UBIQUITIN PROTEASOM	60	1.29e-03	0.240000	1.26e-02
SIGNALLING RECEPTOR KINASES S-LOCUS GLYCOPROTEIN LIKE	23	4.62e-02	-0.240000	1.52e-01
STRESS ABIOTIC	21	5.91e-02	0.238000	1.79e-01
PROTEIN TARGETING SECRETORY PATHWAY VACUOLE	29	3.01e-02	-0.233000	1.13e-01
PROTEIN TARGETING SECRETORY PATHWAY UNSPECIFIED	72	7.87e-04	0.229000	8.63e-03
TRANSPORT NITRATE	12	1.74e-01	-0.227000	3.23e-01
LIPID METABOLISM PHOSPHOLIPID SYNTHESIS	16	1.25e-01	0.222000	2.74e-01
SIGNALLING MISC	16	1.28e-01	0.220000	2.77e-01
REDOX ASCORBATE AND GLUTATHIONE GLUTATHIONE	12	1.90e-01	0.218000	3.38e-01
DEVELOPMENT LATE EMBRYOGENESIS ABUNDANT	18	1.09e-01	0.218000	2.52e-01
RNA REGULATION OF TRANSCRIPTION SNF7	12	1.93e-01	-0.217000	3.40e-01
RNA REGULATION OF TRANSCRIPTION ZN-FINGER(CCHC)	10	2.38e-01	0.215000	4.07e-01
PROTEIN DEGRADATION SERINE PROTEASE	80	9.36e-04	-0.214000	9.84e-03
RNA REGULATION OF TRANSCRIPTION	13	1.84e-01	-0.213000	3.35e-01
MISC GCN5-RELATED N-ACETYLTRANSFERASE	25	6.83e-02	0.211000	1.95e-01
CELL WALL CELL WALL PROTEINS HRGP	14	1.79e-01	-0.207000	3.29e-01
PROTEIN DEGRADATION UBIQUITIN E2	38	2.80e-02	0.206000	1.08e-01
HORMONE METABOLISM CYTOKININ SYNTHESIS-DEGRADATION	15	1.70e-01	0.205000	3.20e-01
SIGNALLING RECEPTOR KINASES LEUCINE RICH REPEAT VIII VIII-2	14	1.87e-01	-0.203000	3.37e-01
NOT ASSIGNED NO ONTOLOGY C2 DOMAIN-CONTAINING PROTEIN	38	3.10e-02	-0.202000	1.14e-01
AMINO ACID METABOLISM SYNTHESIS SERINE-GLYCINE-CYSTEINE GROUP CYSTEINE OASTL	10	2.69e-01	0.202000	4.47e-01
TRANSPORT POTASSIUM	37	3.41e-02	-0.201000	1.21e-01
PROTEIN AA ACTIVATION PSEUDOURIDYLATE SYNTHASE	16	1.67e-01	-0.199000	3.20e-01
MISC BETA 1,3 GLUCAN HYDROLASES	19	1.39e-01	0.196000	2.89e-01
HORMONE METABOLISM AUXIN SYNTHESIS-DEGRADATION	13	2.28e-01	0.193000	3.92e-01
PROTEIN SYNTHESIS RIBOSOMAL PROTEIN EUKARYOTIC 60S SUBUNIT L34	10	2.95e-01	0.191000	4.76e-01
PS LIGHTREACTION PHOTOSYSTEM I PSI POLYPEPTIDE SUBUNITS	18	1.62e-01	0.191000	3.15e-01
REDOX ASCORBATE AND GLUTATHIONE	23	1.15e-01	0.190000	2.58e-01
PS LIGHTREACTION PHOTOSYSTEM II LHC-II	14	2.20e-01	0.189000	3.81e-01
STRESS BIOTIC PR-PROTEINS	173	2.22e-05	-0.187000	5.84e-04
RNA REGULATION OF TRANSCRIPTION METHYL BINDING DOMAIN PROTEINS	10	3.09e-01	0.186000	4.92e-01
CO-FACTOR AND VITAMINE METABOLISM	15	2.13e-01	-0.186000	3.74e-01
LIPID METABOLISM LIPID DEGRADATION LIPASES TRIACYLGLYCEROL LIPASE	25	1.11e-01	-0.184000	2.53e-01
PROTEIN FOLDING	64	1.35e-02	0.179000	6.58e-02
REDOX ASCORBATE AND GLUTATHIONE ASCORBATE	16	2.17e-01	0.178000	3.77e-01
RNA REGULATION OF TRANSCRIPTION GENERAL TRANSCRIPTION	30	9.69e-02	0.175000	2.40e-01
METAL HANDLING ACQUISITION	10	3.42e-01	0.174000	5.29e-01
RNA REGULATION OF TRANSCRIPTION PWWP DOMAIN PROTEIN	11	3.22e-01	-0.173000	5.06e-01
SECONDARY METABOLISM N MISC ALKALOID-LIKE	20	1.88e-01	0.170000	3.37e-01
NOT ASSIGNED NO ONTOLOGY TETRATRICOPEPTIDE REPEAT (TPR)	26	1.42e-01	-0.166000	2.90e-01
LIPID METABOLISM LIPID TRANSFER PROTEINS ETC	13	3.00e-01	0.166000	4.81e-01
RNA REGULATION OF TRANSCRIPTION WRKY DOMAIN TRANSCRIPTION FACTOR FAMILY	63	2.32e-02	-0.165000	9.64e-02
MISC SHORT CHAIN DEHYDROGENASE/REDUCTASE (SDR)	48	4.89e-02	0.164000	1.55e-01
MISC INVERTASE/PECTIN METHYLESTERASE INHIBITOR FAMILY PROTEIN	23	1.74e-01	0.164000	3.23e-01
SIGNALLING IN SUGAR AND NUTRIENT PHYSIOLOGY	36	8.95e-02	-0.164000	2.28e-01
STRESS ABIOTIC COLD	15	2.74e-01	-0.163000	4.50e-01
PROTEIN DEGRADATION CYSTEINE PROTEASE	49	4.90e-02	-0.163000	1.55e-01
RNA REGULATION OF TRANSCRIPTION MADS BOX TRANSCRIPTION FACTOR FAMILY	29	1.32e-01	-0.162000	2.80e-01
PROTEIN DEGRADATION UBIQUITIN E3 RING	370	1.20e-07	-0.160000	7.92e-06
PROTEIN DEGRADATION UBIQUITIN E3 SCF SKP	16	2.73e-01	0.158000	4.50e-01
RNA REGULATION OF TRANSCRIPTION C2H2 ZINC FINGER FAMILY	101	6.18e-03	-0.158000	3.69e-02
PROTEIN TARGETING PEROXISOMES	11	3.75e-01	-0.154000	5.61e-01
PROTEIN DEGRADATION	130	2.38e-03	-0.154000	1.84e-02
CELL WALL HEMICELLULOSE SYNTHESIS	11	3.77e-01	0.154000	5.61e-01
TRANSPORT P- AND V-ATPASES	28	1.61e-01	-0.153000	3.15e-01
DNA SYNTHESIS/CHROMATIN STRUCTURE	204	2.05e-04	-0.151000	3.23e-03
SIGNALLING RECEPTOR KINASES LEUCINE RICH REPEAT I	19	2.57e-01	-0.150000	4.33e-01
RNA REGULATION OF TRANSCRIPTION TRIHELIX, TRIPLE-HELIX TRANSCRIPTION FACTOR FAMILY	30	1.70e-01	-0.145000	3.20e-01
DEVELOPMENT STORAGE PROTEINS	19	2.82e-01	0.142000	4.58e-01
REDOX THIOREDOXIN	51	8.05e-02	0.141000	2.16e-01
MISC MYROSINASES-LECTIN-JACALIN	46	9.93e-02	0.140000	2.42e-01
PROTEIN DEGRADATION SUBTILASES	34	1.57e-01	-0.140000	3.12e-01
HORMONE METABOLISM GIBBERELIN INDUCED-REGULATED-RESPONSIVE-ACTIVATED	12	4.12e-01	0.137000	6.01e-01
METAL HANDLING BINDING, CHELATION AND STORAGE	47	1.05e-01	0.137000	2.46e-01
RNA REGULATION OF TRANSCRIPTION HSF,HEAT-SHOCK TRANSCRIPTION FACTOR FAMILY	18	3.21e-01	0.135000	5.06e-01
SECONDARY METABOLISM SIMPLE PHENOLS	16	3.63e-01	-0.131000	5.52e-01
PROTEIN SYNTHESIS RIBOSOME BIOGENESIS	11	4.52e-01	-0.131000	6.36e-01
SECONDARY METABOLISM PHENYLPROPANOIDS	37	1.69e-01	0.131000	3.20e-01
SIGNALLING RECEPTOR KINASES LEUCINE RICH REPEAT VI	10	4.75e-01	-0.130000	6.47e-01
DNA REPAIR	74	5.53e-02	-0.129000	1.69e-01
NOT ASSIGNED NO ONTOLOGY FORMIN HOMOLOGY 2 DOMAIN-CONTAINING PROTEIN	17	3.62e-01	-0.128000	5.52e-01
RNA REGULATION OF TRANSCRIPTION HDA	16	3.86e-01	0.125000	5.70e-01
PROTEIN DEGRADATION UBIQUITIN	58	1.01e-01	-0.124000	2.44e-01
PROTEIN DEGRADATION UBIQUITIN E3 BTB/POZ CULLIN3 BTB/POZ	10	4.96e-01	0.124000	6.64e-01
DNA UNSPECIFIED	88	4.37e-02	-0.124000	1.45e-01
SIGNALLING RECEPTOR KINASES WHEAT LRK10 LIKE	12	4.59e-01	-0.123000	6.39e-01
NOT ASSIGNED NO ONTOLOGY HYDROXYPROLINE RICH PROTEINS	53	1.26e-01	0.121000	2.75e-01
METAL HANDLING	10	5.08e-01	-0.121000	6.68e-01
HORMONE METABOLISM ABSCISIC ACID INDUCED-REGULATED-RESPONSIVE-ACTIVATED	22	3.26e-01	0.121000	5.11e-01
NOT ASSIGNED NO ONTOLOGY EPSIN N-TERMINAL HOMOLOGY (ENTH) DOMAIN-CONTAINING PROTEIN	19	3.72e-01	-0.118000	5.61e-01
MISC PEROXIDASES	61	1.11e-01	0.118000	2.53e-01
HORMONE METABOLISM AUXIN INDUCED-REGULATED-RESPONSIVE-ACTIVATED	112	3.18e-02	0.117000	1.14e-01
CELL CYCLE	86	6.83e-02	0.114000	1.95e-01
HORMONE METABOLISM SALICYLIC ACID SYNTHESIS-DEGRADATION	10	5.35e-01	0.113000	6.84e-01
TRANSPORT SUGARS	59	1.39e-01	-0.111000	2.89e-01
RNA REGULATION OF TRANSCRIPTION BHLH,BASIC HELIX-LOOP-HELIX FAMILY	122	3.55e-02	0.110000	1.24e-01
MISC ACID AND OTHER PHOSPHATASES	58	1.48e-01	-0.110000	2.99e-01
TRANSPORT METABOLITE TRANSPORTERS AT THE MITOCHONDRIAL MEMBRANE	64	1.41e-01	0.107000	2.89e-01
RNA REGULATION OF TRANSCRIPTION BZIP TRANSCRIPTION FACTOR FAMILY	60	1.66e-01	0.103000	3.20e-01
MISC CYTOCHROME P450	165	2.38e-02	-0.102000	9.64e-02
REDOX GLUTAREDOXINS	31	3.28e-01	0.101000	5.11e-01
TRANSPORT ABC TRANSPORTERS AND MULTIDRUG RESISTANCE SYSTEMS	112	6.39e-02	-0.101000	1.89e-01
HORMONE METABOLISM ABSCISIC ACID SIGNAL TRANSDUCTION	10	5.84e-01	0.099900	7.25e-01
NUCLEOTIDE METABOLISM DEGRADATION	25	3.93e-01	-0.098800	5.77e-01
PROTEIN POSTRANSLATIONAL MODIFICATION KINASE RECEPTOR LIKE CYTOPLASMATIC KINASE VII	41	2.78e-01	-0.097900	4.54e-01
RNA RNA BINDING	164	3.17e-02	-0.097200	1.14e-01
PROTEIN SYNTHESIS RELEASE	10	5.95e-01	-0.097000	7.35e-01
REDOX DISMUTASES AND CATALASES	11	5.80e-01	-0.096500	7.22e-01
RNA REGULATION OF TRANSCRIPTION AP2/EREBP, APETALA2/ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN FAMILY	91	1.16e-01	0.095400	2.58e-01
PROTEIN SYNTHESIS RIBOSOME BIOGENESIS PRE-RRNA PROCESSING AND MODIFICATIONS DEXD-BOX HELICASES	14	5.41e-01	0.094300	6.84e-01
CELL WALL CELL WALL PROTEINS LRR	16	5.15e-01	-0.094000	6.71e-01
RNA REGULATION OF TRANSCRIPTION MYB DOMAIN TRANSCRIPTION FACTOR FAMILY	123	7.30e-02	0.093600	2.02e-01
HORMONE METABOLISM ETHYLENE INDUCED-REGULATED-RESPONSIVE-ACTIVATED	24	4.51e-01	0.088900	6.36e-01
MISC BETA 1,3 GLUCAN HYDROLASES GLUCAN ENDO-1,3-BETA-GLUCOSIDASE	23	4.63e-01	0.088400	6.40e-01
STRESS ABIOTIC TOUCH/WOUNDING	14	5.67e-01	-0.088400	7.14e-01
RNA REGULATION OF TRANSCRIPTION GEBP LIKE	11	6.17e-01	0.087100	7.51e-01
SIGNALLING LIGHT COP9 SIGNALOSOME	12	6.03e-01	0.086800	7.41e-01
STRESS BIOTIC RECEPTORS	17	5.41e-01	-0.085700	6.84e-01
TRANSPORT UNSPECIFIED CATIONS	39	3.60e-01	-0.084700	5.52e-01
TRANSPORT PHOSPHATE	21	5.04e-01	-0.084200	6.66e-01
STRESS BIOTIC	147	8.28e-02	-0.082900	2.17e-01
STRESS BIOTIC SIGNALLING	13	6.07e-01	0.082300	7.43e-01
RNA REGULATION OF TRANSCRIPTION C2C2(ZN) CO-LIKE, CONSTANS-LIKE ZINC FINGER FAMILY	25	4.81e-01	0.081500	6.52e-01
PROTEIN POSTRANSLATIONAL MODIFICATION	503	1.80e-03	-0.081300	1.50e-02
RNA REGULATION OF TRANSCRIPTION C3H ZINC FINGER FAMILY	24	4.94e-01	-0.080600	6.64e-01
RNA PROCESSING	102	1.61e-01	0.080300	3.15e-01
NOT ASSIGNED NO ONTOLOGY ABC1 FAMILY PROTEIN	11	6.47e-01	0.079800	7.72e-01
SIGNALLING CALCIUM	203	6.18e-02	-0.076100	1.85e-01
PROTEIN SYNTHESIS INITIATION	77	2.52e-01	0.075500	4.28e-01
RNA REGULATION OF TRANSCRIPTION PUTATIVE TRANSCRIPTION REGULATOR	144	1.18e-01	-0.075400	2.62e-01
AMINO ACID METABOLISM DEGRADATION AROMATIC AA TRYPTOPHAN	12	6.55e-01	-0.074600	7.72e-01
RNA REGULATION OF TRANSCRIPTION NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP	13	6.49e-01	-0.072900	7.72e-01
SIGNALLING RECEPTOR KINASES LEUCINE RICH REPEAT II	13	6.50e-01	0.072700	7.72e-01
TRANSPORT MISC	116	1.88e-01	-0.070800	3.37e-01
RNA REGULATION OF TRANSCRIPTION G2-LIKE TRANSCRIPTION FACTOR FAMILY, GARP	37	4.57e-01	-0.070600	6.39e-01
TRANSPORT SULPHATE	12	6.77e-01	0.069500	7.81e-01
PROTEIN SYNTHESIS RIBOSOME BIOGENESIS PRE-RRNA PROCESSING AND MODIFICATIONS METHYLOTRANSFERASES	16	6.32e-01	0.069100	7.66e-01
NOT ASSIGNED NO ONTOLOGY ARMADILLO/BETA-CATENIN REPEAT FAMILY PROTEIN	31	5.12e-01	-0.068000	6.70e-01
MISC GLUCO-, GALACTO- AND MANNOSIDASES ENDOGLUCANASE	13	6.74e-01	0.067400	7.81e-01
SIGNALLING RECEPTOR KINASES DUF 26	43	4.46e-01	-0.067200	6.33e-01
RNA REGULATION OF TRANSCRIPTION MYB-RELATED TRANSCRIPTION FACTOR FAMILY	42	4.74e-01	0.063800	6.47e-01
LIPID METABOLISM LIPID DEGRADATION LIPASES	11	7.18e-01	-0.063000	8.03e-01
PROTEIN TARGETING SECRETORY PATHWAY GOLGI	17	6.55e-01	-0.062600	7.72e-01
PROTEIN GLYCOSYLATION	28	5.76e-01	0.061000	7.22e-01
PROTEIN DEGRADATION UBIQUITIN E3 SCF FBOX	254	9.91e-02	-0.060100	2.42e-01
RNA REGULATION OF TRANSCRIPTION UNCLASSIFIED	269	9.00e-02	-0.060100	2.28e-01
TRANSPORT AMINO ACIDS	58	4.31e-01	-0.059800	6.23e-01
DEVELOPMENT UNSPECIFIED	572	1.65e-02	-0.058700	7.49e-02
TCA / ORG TRANSFORMATION CARBONIC ANHYDRASES	10	7.52e-01	0.057700	8.30e-01
MISC PROTEASE INHIBITOR/SEED STORAGE/LIPID TRANSFER PROTEIN (LTP) FAMILY PROTEIN	62	4.43e-01	-0.056300	6.33e-01
STRESS ABIOTIC UNSPECIFIED	84	3.78e-01	0.055700	5.61e-01
CELL ORGANISATION	345	7.73e-02	-0.055400	2.10e-01
STRESS BIOTIC SIGNALLING MLO-LIKE	12	7.40e-01	-0.055400	8.21e-01
RNA REGULATION OF TRANSCRIPTION HB,HOMEOBOX TRANSCRIPTION FACTOR FAMILY	68	4.31e-01	0.055300	6.23e-01
RNA PROCESSING SPLICING	59	4.65e-01	0.055000	6.40e-01
TRANSPORT METAL	67	4.37e-01	-0.054900	6.28e-01
CELL WALL CELLULOSE SYNTHESIS CELLULOSE SYNTHASE	25	6.46e-01	-0.053100	7.72e-01
HORMONE METABOLISM ETHYLENE SYNTHESIS-DEGRADATION	20	6.98e-01	-0.050100	7.95e-01
PROTEIN DEGRADATION UBIQUITIN UBIQUITIN	24	6.80e-01	0.048700	7.81e-01
RNA REGULATION OF TRANSCRIPTION ZF-HD	14	7.54e-01	-0.048300	8.30e-01
STRESS ABIOTIC DROUGHT/SALT	66	5.04e-01	-0.047600	6.66e-01
LIPID METABOLISM EXOTICS (STEROIDS, SQUALENE ETC) SPHINGOLIPIDS	20	7.16e-01	0.047000	8.03e-01
NOT ASSIGNED UNKNOWN	4522	2.00e-06	0.046100	7.53e-05
PROTEIN ASSEMBLY AND COFACTOR LIGATION	23	7.14e-01	0.044200	8.03e-01
SIGNALLING G-PROTEINS	219	2.63e-01	0.043900	4.41e-01
SECONDARY METABOLISM ISOPRENOIDS TERPENOIDS	28	6.90e-01	-0.043600	7.89e-01
RNA TRANSCRIPTION	84	4.98e-01	0.042800	6.64e-01
MISC OXIDASES - COPPER, FLAVONE ETC	85	5.18e-01	0.040600	6.71e-01
NOT ASSIGNED NO ONTOLOGY PROLINE RICH FAMILY	38	6.78e-01	-0.038900	7.81e-01
MINOR CHO METABOLISM OTHERS	39	6.78e-01	-0.038500	7.81e-01
DEVELOPMENT SQUAMOSA PROMOTER BINDING LIKE (SPL)	17	7.86e-01	-0.038000	8.58e-01
RNA REGULATION OF TRANSCRIPTION SET-DOMAIN TRANSCRIPTIONAL REGULATOR FAMILY	34	7.12e-01	-0.036600	8.03e-01
SIGNALLING RECEPTOR KINASES LEUCINE RICH REPEAT III	40	7.22e-01	-0.032500	8.04e-01
TRANSPORT CYCLIC NUCLEOTIDE OR CALCIUM REGULATED CHANNELS	17	8.28e-01	-0.030400	8.89e-01
RNA REGULATION OF TRANSCRIPTION TCP TRANSCRIPTION FACTOR FAMILY	17	8.32e-01	-0.029700	8.90e-01
MISC UDP GLUCOSYL AND GLUCORONYL TRANSFERASES	157	5.39e-01	0.028400	6.84e-01
SIGNALLING LIGHT	89	6.63e-01	-0.026700	7.79e-01
MISC O-METHYL TRANSFERASES	19	8.44e-01	0.026100	8.98e-01
SIGNALLING RECEPTOR KINASES LEUCINE RICH REPEAT XI	28	8.13e-01	-0.025900	8.79e-01
C1-METABOLISM	10	8.89e-01	0.025400	9.32e-01
PROTEIN POSTRANSLATIONAL MODIFICATION KINASE RECEPTOR LIKE CYTOPLASMATIC KINASE VI	14	8.86e-01	0.022100	9.32e-01
SIGNALLING MAP KINASES	44	8.17e-01	-0.020200	8.80e-01
CELL DIVISION	92	7.96e-01	0.015600	8.65e-01
RNA REGULATION OF TRANSCRIPTION PHOR1	11	9.29e-01	0.015500	9.58e-01
SECONDARY METABOLISM WAX	16	9.16e-01	0.015200	9.52e-01
HORMONE METABOLISM AUXIN SIGNAL TRANSDUCTION	23	9.00e-01	0.015100	9.40e-01
STRESS ABIOTIC HEAT	163	7.69e-01	0.013300	8.42e-01
RNA PROCESSING RIBONUCLEASES	47	8.82e-01	0.012500	9.31e-01
CELL WALL DEGRADATION PECTATE LYASES AND POLYGALACTURONASES	66	8.74e-01	-0.011300	9.27e-01
NOT ASSIGNED NO ONTOLOGY	1412	5.27e-01	0.010100	6.80e-01
SIGNALLING RECEPTOR KINASES LEUCINE RICH REPEAT VII	10	9.56e-01	0.010100	9.76e-01
PROTEIN SYNTHESIS ELONGATION	29	9.32e-01	-0.009120	9.58e-01
TRANSPORT PEPTIDES AND OLIGOPEPTIDES	53	9.31e-01	-0.006880	9.58e-01
MISC MISC2	28	9.63e-01	-0.005020	9.76e-01
PROTEIN DEGRADATION UBIQUITIN UBIQUITIN PROTEASE	20	9.72e-01	-0.004530	9.76e-01
MISC GLUCO-, GALACTO- AND MANNOSIDASES	43	9.66e-01	-0.003800	9.76e-01
PROTEIN TARGETING NUCLEUS	43	9.72e-01	0.003040	9.76e-01
MISC GDSL-MOTIF LIPASE	61	9.72e-01	0.002580	9.76e-01
CELL VESICLE TRANSPORT	157	9.86e-01	0.000796	9.86e-01

Detailed Gene set reports

MITOCHONDRIAL_ELECTRON_TRANSPORT_/_ATP_SYNTHESIS_F1-ATPASE

MITOCHONDRIAL_ELECTRON_TRANSPORT_/_ATP_SYNTHESIS_F1-ATPASE
	77
set	MITOCHONDRIAL_ELECTRON_TRANSPORT_/_ATP_SYNTHESIS_F1-ATPASE
setSize	20
pANOVA	4.08e-07
s.dist	0.654
p.adjustANOVA	2.14e-05

Top enriched genes

Top 20 genes
GeneID	Gene Rank
AT2G07698	10539
ATP6-1	10229
ATP1	10154
ORF25	10090
YMF19	9634
AT2G19680	9341
AT5G60730	8976
AT1G51650	8959
AT4G29480	8789
AT4G26210	8074
AT3G46430	7812
AT5G08670	7518
AT5G47030	7501
ATP5	7153
ATPQ	6891
ATPC	6746
AT5G08690	6092
AT5G08680	5142
ATP9	-4750
AT5G12420	-5132

Click HERE to show all gene set members

All member genes
GeneID	Gene Rank
AT2G07698	10539
ATP6-1	10229
ATP1	10154
ORF25	10090
YMF19	9634
AT2G19680	9341
AT5G60730	8976
AT1G51650	8959
AT4G29480	8789
AT4G26210	8074
AT3G46430	7812
AT5G08670	7518
AT5G47030	7501
ATP5	7153
ATPQ	6891
ATPC	6746
AT5G08690	6092
AT5G08680	5142
ATP9	-4750
AT5G12420	-5132

CELL_WALL_CELL_WALL_PROTEINS_AGPS_AGP

CELL_WALL_CELL_WALL_PROTEINS_AGPS_AGP
	12
set	CELL_WALL_CELL_WALL_PROTEINS_AGPS_AGP
setSize	40
pANOVA	3.1e-10
s.dist	0.575
p.adjustANOVA	2.72e-08

Top enriched genes

Top 20 genes
GeneID	Gene Rank
AGP18	10483
AGP4	10374
AGP13	10239
AGP9	10231
AGP22	10211
AGP24	10207
FLA9	10138
AGP21	10120
AGP7	9960
AGP14	9942
FLA1	9780
FLA6	9733
AGP1	9688
FLA10	9533
FLA7	9430
FLA13	9422
AGP12	9323
AGP5	9162
FLA2	8889
AGP3	8858

Click HERE to show all gene set members

All member genes
GeneID	Gene Rank
AGP18	10483
AGP4	10374
AGP13	10239
AGP9	10231
AGP22	10211
AGP24	10207
FLA9	10138
AGP21	10120
AGP7	9960
AGP14	9942
FLA1	9780
FLA6	9733
AGP1	9688
FLA10	9533
FLA7	9430
FLA13	9422
AGP12	9323
AGP5	9162
FLA2	8889
AGP3	8858
AGP2	8058
FLA8	8002
FLA4	7931
AGP10	7047
AT4G16980	6930
AGP20	6245
AGP19	5748
FLA12	5671
AGP16	4694
AGP40	4142
FLA17	3284
FLA15	2762
FLA11	1042
FLA5	1036
AGP25	191
APG	-195
FLA18	-895
AGP27	-4230
AGP17	-8398
AGP26	-8433

DNA_SYNTHESIS/CHROMATIN_STRUCTURE_HISTONE_CORE_H2A

DNA_SYNTHESIS/CHROMATIN_STRUCTURE_HISTONE_CORE_H2A
	26
set	DNA_SYNTHESIS/CHROMATIN_STRUCTURE_HISTONE_CORE_H2A
setSize	13
pANOVA	0.000342
s.dist	0.574
p.adjustANOVA	0.00474

Top enriched genes

Top 20 genes
GeneID	Gene Rank
HTA6	9610
RAT5	8852
HTA3	8758
HTA10	8563
HTA8	8215
HTA13	8060
H2AV	8036
H2B	7963
HTA9	5819
HTA7	5143
HTA2	2900
HTA12	2834
HTA5	-4767

Click HERE to show all gene set members

All member genes
GeneID	Gene Rank
HTA6	9610
RAT5	8852
HTA3	8758
HTA10	8563
HTA8	8215
HTA13	8060
H2AV	8036
H2B	7963
HTA9	5819
HTA7	5143
HTA2	2900
HTA12	2834
HTA5	-4767

CELL_WALL_CELLULOSE_SYNTHESIS

CELL_WALL_CELLULOSE_SYNTHESIS
	10
set	CELL_WALL_CELLULOSE_SYNTHESIS
setSize	14
pANOVA	0.000624
s.dist	0.528
p.adjustANOVA	0.00746

Top enriched genes

Top 20 genes
GeneID	Gene Rank
CSLA15	10458
ATCSLA11	10283
ATCSLA01	9846
CSLA10	9339
CSLC12	8811
CSLA14	7708
CSLA9	7113
CSLC5	6519
CSLC4	5676
CSLA2	4415
CSLC8	2561
CSLC6	222
KOR	-564
PNT1	-2876

Click HERE to show all gene set members

All member genes
GeneID	Gene Rank
CSLA15	10458
ATCSLA11	10283
ATCSLA01	9846
CSLA10	9339
CSLC12	8811
CSLA14	7708
CSLA9	7113
CSLC5	6519
CSLC4	5676
CSLA2	4415
CSLC8	2561
CSLC6	222
KOR	-564
PNT1	-2876

RNA_REGULATION_OF_TRANSCRIPTION_AUX/IAA_FAMILY

RNA_REGULATION_OF_TRANSCRIPTION_AUX/IAA_FAMILY
	160
set	RNA_REGULATION_OF_TRANSCRIPTION_AUX/IAA_FAMILY
setSize	25
pANOVA	6.21e-06
s.dist	0.522
p.adjustANOVA	0.000204

Top enriched genes

Top 20 genes
GeneID	Gene Rank
IAA19	10020
IAA5	9991
IAA1	9444
IAA6	9348
IAA7	9288
IAA29	9129
IAA16	8915
IAA14	8735
SHY2	8724
IAA2	8473
IAA30	7731
IAA17	7372
IAA18	6978
IAA28	6561
IAA4	6313
IAA9	4678
IAA20	4558
IAA12	3950
IAA8	3858
IAA26	1836

Click HERE to show all gene set members

All member genes
GeneID	Gene Rank
IAA19	10020
IAA5	9991
IAA1	9444
IAA6	9348
IAA7	9288
IAA29	9129
IAA16	8915
IAA14	8735
SHY2	8724
IAA2	8473
IAA30	7731
IAA17	7372
IAA18	6978
IAA28	6561
IAA4	6313
IAA9	4678
IAA20	4558
IAA12	3950
IAA8	3858
IAA26	1836
IAA13	1559
IAA33	250
IAA11	221
IAA10	-167
IAA32	-7402

MITOCHONDRIAL_ELECTRON_TRANSPORT_/_ATP_SYNTHESIS_NADH-DH_LOCALISATION_NOT_CLEAR

MITOCHONDRIAL_ELECTRON_TRANSPORT_/_ATP_SYNTHESIS_NADH-DH_LOCALISATION_NOT_CLEAR
	78
set	MITOCHONDRIAL_ELECTRON_TRANSPORT_/_ATP_SYNTHESIS_NADH-DH_LOCALISATION_NOT_CLEAR
setSize	33
pANOVA	5.44e-07
s.dist	0.504
p.adjustANOVA	2.39e-05

Top enriched genes

Top 20 genes
GeneID	Gene Rank
NAD5A	10334
NAD9	10298
NAD7	10287
NAD5C	10228
NAD2A	10190
NAD2B	10113
NAD4	10096
NAD1B	8425
AT5G52840	7750
AT2G07689	7713
FRO1	7520
NAD6	7439
AT5G18800	7435
AT2G07751	7424
AT5G11770	7122
AT5G47890	6950
AT3G62790	6928
NAD1C	6913
AT2G47690	6835
AT1G16700	6429

Click HERE to show all gene set members

All member genes
GeneID	Gene Rank
NAD5A	10334
NAD9	10298
NAD7	10287
NAD5C	10228
NAD2A	10190
NAD2B	10113
NAD4	10096
NAD1B	8425
AT5G52840	7750
AT2G07689	7713
FRO1	7520
NAD6	7439
AT5G18800	7435
AT2G07751	7424
AT5G11770	7122
AT5G47890	6950
AT3G62790	6928
NAD1C	6913
AT2G47690	6835
AT1G16700	6429
AT1G79010	6205
AT3G03070	5875
AT4G02580	5257
AT2G02050	4854
AT3G18410	2906
AT2G20360	2737
AT3G06310	2021
EMB1467	32
AT4G26965	-1291
AT3G03100	-1520
CI51	-2421
AT1G49140	-4695
DER2.1	-7430

REDOX_THIOREDOXIN_PDIL

REDOX_THIOREDOXIN_PDIL
	150
set	REDOX_THIOREDOXIN_PDIL
setSize	13
pANOVA	0.00188
s.dist	0.498
p.adjustANOVA	0.015

Top enriched genes

Top 20 genes
GeneID	Gene Rank
PDIL2-2	10021
PDIL1-5	9300
PDIL1-3	9179
ATPDIL5-4	9174
PDIL2-1	8903
PDIL5-1	7707
PDIL2-3	6916
PDIL1-6	5191
PDIL1-4	4472
PDIL1-2	2533
PDIL5-2	421
PDIL5-3	-331
PDIL1-1	-3711

Click HERE to show all gene set members

All member genes
GeneID	Gene Rank
PDIL2-2	10021
PDIL1-5	9300
PDIL1-3	9179
ATPDIL5-4	9174
PDIL2-1	8903
PDIL5-1	7707
PDIL2-3	6916
PDIL1-6	5191
PDIL1-4	4472
PDIL1-2	2533
PDIL5-2	421
PDIL5-3	-331
PDIL1-1	-3711

SIGNALLING_RECEPTOR_KINASES_CATHARANTHUS_ROSEUS-LIKE_RLK1

SIGNALLING_RECEPTOR_KINASES_CATHARANTHUS_ROSEUS-LIKE_RLK1
	216
set	SIGNALLING_RECEPTOR_KINASES_CATHARANTHUS_ROSEUS-LIKE_RLK1
setSize	14
pANOVA	0.00139
s.dist	-0.494
p.adjustANOVA	0.013

Top enriched genes

Top 20 genes
GeneID	Gene Rank
AT5G59700	-10005
AT5G39020	-9897
AT5G39000	-9140
AT5G39030	-8210
FER	-8021
THE1	-7562
AT5G24010	-6576
AT2G39360	-5438
HERK1	-4372
HERK2	-3621
AT5G61350	-2454
AT4G39110	-681
AT2G23200	1780
AT5G38990	5055

Click HERE to show all gene set members

All member genes
GeneID	Gene Rank
AT5G59700	-10005
AT5G39020	-9897
AT5G39000	-9140
AT5G39030	-8210
FER	-8021
THE1	-7562
AT5G24010	-6576
AT2G39360	-5438
HERK1	-4372
HERK2	-3621
AT5G61350	-2454
AT4G39110	-681
AT2G23200	1780
AT5G38990	5055

NOT_ASSIGNED_NO_ONTOLOGY_AGENET_DOMAIN-CONTAINING_PROTEIN

NOT_ASSIGNED_NO_ONTOLOGY_AGENET_DOMAIN-CONTAINING_PROTEIN
	81
set	NOT_ASSIGNED_NO_ONTOLOGY_AGENET_DOMAIN-CONTAINING_PROTEIN
setSize	16
pANOVA	0.000662
s.dist	-0.492
p.adjustANOVA	0.00757

Top enriched genes

Top 20 genes
GeneID	Gene Rank
DUF1	-9993
AT4G32440	-8999
AT2G25590	-7424
AT1G09320	-7303
DUF7	-6857
DUF6	-6615
AT5G20030	-6288
DUF8	-4885
ATDUF10	-4764
AT5G52070	-4131
AT3G06520	-4036
DUF3	-3727
AT5G42670	-2298
ATG2484-1	-2285
DUF2	-2011
DUF9	2920

Click HERE to show all gene set members

All member genes
GeneID	Gene Rank
DUF1	-9993
AT4G32440	-8999
AT2G25590	-7424
AT1G09320	-7303
DUF7	-6857
DUF6	-6615
AT5G20030	-6288
DUF8	-4885
ATDUF10	-4764
AT5G52070	-4131
AT3G06520	-4036
DUF3	-3727
AT5G42670	-2298
ATG2484-1	-2285
DUF2	-2011
DUF9	2920

MITOCHONDRIAL_ELECTRON_TRANSPORT_/_ATP_SYNTHESIS_CYTOCHROME_C_REDUCTASE

MITOCHONDRIAL_ELECTRON_TRANSPORT_/_ATP_SYNTHESIS_CYTOCHROME_C_REDUCTASE
	76
set	MITOCHONDRIAL_ELECTRON_TRANSPORT_/_ATP_SYNTHESIS_CYTOCHROME_C_REDUCTASE
setSize	10
pANOVA	0.0084
s.dist	0.481
p.adjustANOVA	0.047

Top enriched genes

Top 20 genes
GeneID	Gene Rank
AT2G07727	10067
UCR1-1	9271
AT1G15120	8598
QCR7-1	7156
AT3G52730	7025
AT5G05370	6075
AT3G10860	3706
UCR1-2	2447
QCR7-2	1624
AT1G36380	-4021

Click HERE to show all gene set members

All member genes
GeneID	Gene Rank
AT2G07727	10067
UCR1-1	9271
AT1G15120	8598
QCR7-1	7156
AT3G52730	7025
AT5G05370	6075
AT3G10860	3706
UCR1-2	2447
QCR7-2	1624
AT1G36380	-4021

PROTEIN_TARGETING_SECRETORY_PATHWAY_ER

PROTEIN_TARGETING_SECRETORY_PATHWAY_ER
	135
set	PROTEIN_TARGETING_SECRETORY_PATHWAY_ER
setSize	14
pANOVA	0.00281
s.dist	0.461
p.adjustANOVA	0.0211

Top enriched genes

Top 20 genes
GeneID	Gene Rank
ERD2A	10429
AT1G19970	10025
PVA12	8845
AT2G39960	8128
RER1A	7661
ERD2B	7531
AERO1	7060
RER1C	6423
ERO2	5965
RER1B	2817
AT2G21190	2513
AT4G38790	-1344
AT1G75760	-2681
AT2G18240	-3593

Click HERE to show all gene set members

All member genes
GeneID	Gene Rank
ERD2A	10429
AT1G19970	10025
PVA12	8845
AT2G39960	8128
RER1A	7661
ERD2B	7531
AERO1	7060
RER1C	6423
ERO2	5965
RER1B	2817
AT2G21190	2513
AT4G38790	-1344
AT1G75760	-2681
AT2G18240	-3593

RNA_REGULATION_OF_TRANSCRIPTION_AS2,LATERAL_ORGAN_BOUNDARIES_GENE_FAMILY

RNA_REGULATION_OF_TRANSCRIPTION_AS2,LATERAL_ORGAN_BOUNDARIES_GENE_FAMILY
	159
set	RNA_REGULATION_OF_TRANSCRIPTION_AS2,LATERAL_ORGAN_BOUNDARIES_GENE_FAMILY
setSize	23
pANOVA	0.000135
s.dist	0.46
p.adjustANOVA	0.00273

Top enriched genes

Top 20 genes
GeneID	Gene Rank
LBD41	10492
LBD25	10091
LBD14	9842
LBD17	9147
LBD16	8961
LBD15	8628
AS2	8581
LBD1	8219
LBD4	8162
LBD37	6936
LBD13	5873
LOB	5623
LBD39	5603
LBD3	5164
LBD12	4422
LBD11	3041
LBD38	2525
LBD21	1363
LBD18	585
LBD30	-1189

Click HERE to show all gene set members

All member genes
GeneID	Gene Rank
LBD41	10492
LBD25	10091
LBD14	9842
LBD17	9147
LBD16	8961
LBD15	8628
AS2	8581
LBD1	8219
LBD4	8162
LBD37	6936
LBD13	5873
LOB	5623
LBD39	5603
LBD3	5164
LBD12	4422
LBD11	3041
LBD38	2525
LBD21	1363
LBD18	585
LBD30	-1189
LBD36	-1499
LBD20	-2780
LBD29	-3542

STRESS_BIOTIC_PR-PROTEINS_PLANT_DEFENSINS

STRESS_BIOTIC_PR-PROTEINS_PLANT_DEFENSINS
	240
set	STRESS_BIOTIC_PR-PROTEINS_PLANT_DEFENSINS
setSize	13
pANOVA	0.00413
s.dist	0.459
p.adjustANOVA	0.0289

Top enriched genes

Top 20 genes
GeneID	Gene Rank
AT4G22230	10175
EDA21	10015
AT5G33355	9875
AT3G59930	9756
AT4G22235	9692
AT4G22214	9640
AT4G22212	8868
AT4G22217	8305
AT3G63360	4662
AT1G34047	28
ATTI2	-2809
AT3G05730	-3639
ATTI1	-10006

Click HERE to show all gene set members

All member genes
GeneID	Gene Rank
AT4G22230	10175
EDA21	10015
AT5G33355	9875
AT3G59930	9756
AT4G22235	9692
AT4G22214	9640
AT4G22212	8868
AT4G22217	8305
AT3G63360	4662
AT1G34047	28
ATTI2	-2809
AT3G05730	-3639
ATTI1	-10006

MITOCHONDRIAL_ELECTRON_TRANSPORT_/_ATP_SYNTHESIS_CYTOCHROME_C

MITOCHONDRIAL_ELECTRON_TRANSPORT_/_ATP_SYNTHESIS_CYTOCHROME_C
	74
set	MITOCHONDRIAL_ELECTRON_TRANSPORT_/_ATP_SYNTHESIS_CYTOCHROME_C
setSize	10
pANOVA	0.013
s.dist	0.453
p.adjustANOVA	0.0646

Top enriched genes

Top 20 genes
GeneID	Gene Rank
CCB382	10167
CCB452	9481
CYTC-1	9186
ATG1	9109
CYTC-2	7857
CCB203	6250
CYC12	5511
CYC11	4572
CCMH	-5001
CCS1	-8075

Click HERE to show all gene set members

All member genes
GeneID	Gene Rank
CCB382	10167
CCB452	9481
CYTC-1	9186
ATG1	9109
CYTC-2	7857
CCB203	6250
CYC12	5511
CYC11	4572
CCMH	-5001
CCS1	-8075

TRANSPORT_MAJOR_INTRINSIC_PROTEINS_PIP

TRANSPORT_MAJOR_INTRINSIC_PROTEINS_PIP
	249
set	TRANSPORT_MAJOR_INTRINSIC_PROTEINS_PIP
setSize	13
pANOVA	0.00477
s.dist	0.452
p.adjustANOVA	0.0299

Top enriched genes

Top 20 genes
GeneID	Gene Rank
PIP2-3	10301
PIP1-3	9729
PIP2-1	9076
PIP1B	9006
PIP1-1	8519
PIP2-7	8379
PIP1.4	7609
PIP2B	7495
PIP2-5	7104
PIP2-8	3652
PIP2-4	-972
PIP2-6	-6869
PIP1-5	-9458

Click HERE to show all gene set members

All member genes
GeneID	Gene Rank
PIP2-3	10301
PIP1-3	9729
PIP2-1	9076
PIP1B	9006
PIP1-1	8519
PIP2-7	8379
PIP1.4	7609
PIP2B	7495
PIP2-5	7104
PIP2-8	3652
PIP2-4	-972
PIP2-6	-6869
PIP1-5	-9458

SIGNALLING_14-3-3_PROTEINS

SIGNALLING_14-3-3_PROTEINS
	206
set	SIGNALLING_14-3-3_PROTEINS
setSize	11
pANOVA	0.00998
s.dist	0.449
p.adjustANOVA	0.0525

Top enriched genes

Top 20 genes
GeneID	Gene Rank
GRF2	9824
GRF9	9527
GRF3	8371
GRF1	8285
GRF8	5454
GRF10	5401
GRF6	4884
GRF11	3942
AT1G22290	3276
GRF7	-622
GRF5	-4941

Click HERE to show all gene set members

All member genes
GeneID	Gene Rank
GRF2	9824
GRF9	9527
GRF3	8371
GRF1	8285
GRF8	5454
GRF10	5401
GRF6	4884
GRF11	3942
AT1G22290	3276
GRF7	-622
GRF5	-4941

LIPID_METABOLISM_LIPID_DEGRADATION_LYSOPHOSPHOLIPASES_PHOSPHOLIPASE_D

LIPID_METABOLISM_LIPID_DEGRADATION_LYSOPHOSPHOLIPASES_PHOSPHOLIPASE_D
	46
set	LIPID_METABOLISM_LIPID_DEGRADATION_LYSOPHOSPHOLIPASES_PHOSPHOLIPASE_D
setSize	12
pANOVA	0.00776
s.dist	-0.444
p.adjustANOVA	0.0444

Top enriched genes

Top 20 genes
GeneID	Gene Rank
PLDDELTA	-9612
PLDGAMMA1	-8888
PLPZETA2	-7413
PLDALPHA3	-5275
PLDGAMMA2	-5078
PLDALPHA2	-4283
PLDALPHA4	-3862
PLDGAMMA3	-3858
PLDP1	-3404
PLDBETA1	-1883
PLDALPHA1	30
PLDBETA2	449

Click HERE to show all gene set members

All member genes
GeneID	Gene Rank
PLDDELTA	-9612
PLDGAMMA1	-8888
PLPZETA2	-7413
PLDALPHA3	-5275
PLDGAMMA2	-5078
PLDALPHA2	-4283
PLDALPHA4	-3862
PLDGAMMA3	-3858
PLDP1	-3404
PLDBETA1	-1883
PLDALPHA1	30
PLDBETA2	449

PROTEIN_TARGETING_CHLOROPLAST

PROTEIN_TARGETING_CHLOROPLAST
	131
set	PROTEIN_TARGETING_CHLOROPLAST
setSize	36
pANOVA	7.8e-06
s.dist	-0.43
p.adjustANOVA	0.000228

Top enriched genes

Top 20 genes
GeneID	Gene Rank
OEP161	-9656
TIC110	-9495
TATC	-9325
TPP1	-8705
PLSP1	-8593
TIC20-IV	-8324
OEP80	-8307
AGY1	-8290
ALB3	-8152
CPFTSY	-8009
OEP7	-7863
SECA2	-7423
AT1G21651	-7334
TOC159	-7238
TIC22	-7138
TOC90	-7062
AT4G15810	-6867
FFC	-6187
SCY1	-6075
TATB	-5036

Click HERE to show all gene set members

All member genes
GeneID	Gene Rank
OEP161	-9656
TIC110	-9495
TATC	-9325
TPP1	-8705
PLSP1	-8593
TIC20-IV	-8324
OEP80	-8307
AGY1	-8290
ALB3	-8152
CPFTSY	-8009
OEP7	-7863
SECA2	-7423
AT1G21651	-7334
TOC159	-7238
TIC22	-7138
TOC90	-7062
AT4G15810	-6867
FFC	-6187
SCY1	-6075
TATB	-5036
TOC120	-4914
TIC20-II	-4637
TIC22L	-4159
TOC132	-4120
OEP64	-3968
TOC75-3	-3736
TIC55	-2440
TOC75-IV	-1957
TIC40	61
TOC33	542
TIC21	1561
SIB1	1967
TGD2	5656
OM64	6389
TOC34	7339
TIC20-I	7451

PROTEIN_SYNTHESIS_RIBOSOME_BIOGENESIS_PRE-RRNA_PROCESSING_AND_MODIFICATIONS_SNORNPS

PROTEIN_SYNTHESIS_RIBOSOME_BIOGENESIS_PRE-RRNA_PROCESSING_AND_MODIFICATIONS_SNORNPS
	130
set	PROTEIN_SYNTHESIS_RIBOSOME_BIOGENESIS_PRE-RRNA_PROCESSING_AND_MODIFICATIONS_SNORNPS
setSize	13
pANOVA	0.00861
s.dist	0.421
p.adjustANOVA	0.0472

Top enriched genes

Top 20 genes
GeneID	Gene Rank
AT5G08180	9626
NOP5-2	9442
AT5G18180	8206
CBF5	7979
AT4G22380	6667
NOP10	6479
AT3G12860	6452
AT2G40700	4893
AT5G66540	3793
AT3G03920	2098
AT3G06530	1221
NUCL2	-355
NUCL1	-7152

Click HERE to show all gene set members

All member genes
GeneID	Gene Rank
AT5G08180	9626
NOP5-2	9442
AT5G18180	8206
CBF5	7979
AT4G22380	6667
NOP10	6479
AT3G12860	6452
AT2G40700	4893
AT5G66540	3793
AT3G03920	2098
AT3G06530	1221
NUCL2	-355
NUCL1	-7152

RNA_REGULATION_OF_TRANSCRIPTION_NAC_DOMAIN_TRANSCRIPTION_FACTOR_FAMILY

RNA_REGULATION_OF_TRANSCRIPTION_NAC_DOMAIN_TRANSCRIPTION_FACTOR_FAMILY
	184
set	RNA_REGULATION_OF_TRANSCRIPTION_NAC_DOMAIN_TRANSCRIPTION_FACTOR_FAMILY
setSize	16
pANOVA	0.0047
s.dist	-0.408
p.adjustANOVA	0.0299

Top enriched genes

Top 20 genes
GeneID	Gene Rank
NAC055	-9559
NAC047	-9417
AT3G12910	-8477
anac074	-8256
ANAC13	-7686
NTL9	-7289
NAC021	-6613
NAC091	-5922
NAC056	-4643
anac044	-2930
NAC045	-1624
NAC054	-1532
NAC041	238
AT3G13000	1011
anac028	3850
AT3G56570	4020

Click HERE to show all gene set members

All member genes
GeneID	Gene Rank
NAC055	-9559
NAC047	-9417
AT3G12910	-8477
anac074	-8256
ANAC13	-7686
NTL9	-7289
NAC021	-6613
NAC091	-5922
NAC056	-4643
anac044	-2930
NAC045	-1624
NAC054	-1532
NAC041	238
AT3G13000	1011
anac028	3850
AT3G56570	4020

SIGNALLING_RECEPTOR_KINASES_WALL_ASSOCIATED_KINASE

SIGNALLING_RECEPTOR_KINASES_WALL_ASSOCIATED_KINASE
	230
set	SIGNALLING_RECEPTOR_KINASES_WALL_ASSOCIATED_KINASE
setSize	22
pANOVA	0.0015
s.dist	-0.391
p.adjustANOVA	0.0136

Top enriched genes

Top 20 genes
GeneID	Gene Rank
WAK4	-10184
WAKL5	-10121
WAKL11	-10047
WAKL2	-10011
WAKL13	-9983
WAKL22	-9803
WAKL10	-9486
WAKL15	-9278
WAK5	-9192
WAKL4	-9050
WAKL14	-8233
WAKL1	-8100
WAK2	-7463
WAKL21	-7446
WAKL6	-3445
WAKL17	4709
WAK3	5686
WAKL18	5729
WAKL9	5794
WAKL20	6562

Click HERE to show all gene set members

All member genes
GeneID	Gene Rank
WAK4	-10184
WAKL5	-10121
WAKL11	-10047
WAKL2	-10011
WAKL13	-9983
WAKL22	-9803
WAKL10	-9486
WAKL15	-9278
WAK5	-9192
WAKL4	-9050
WAKL14	-8233
WAKL1	-8100
WAK2	-7463
WAKL21	-7446
WAKL6	-3445
WAKL17	4709
WAK3	5686
WAKL18	5729
WAKL9	5794
WAKL20	6562
WAKL8	8901
WAK1	9267

HORMONE_METABOLISM_JASMONATE_INDUCED-REGULATED-RESPONSIVE-ACTIVATED

HORMONE_METABOLISM_JASMONATE_INDUCED-REGULATED-RESPONSIVE-ACTIVATED
	39
set	HORMONE_METABOLISM_JASMONATE_INDUCED-REGULATED-RESPONSIVE-ACTIVATED
setSize	13
pANOVA	0.0153
s.dist	0.388
p.adjustANOVA	0.0732

Top enriched genes

Top 20 genes
GeneID	Gene Rank
PBP2	10052
NSP3	9774
JAL33	9743
JAL35	9736
JAL34	9297
JAL20	7089
JAL14	6127
JAL10	1133
ESP	975
JAL9	-282
JAL8	-334
ATMLP-300B	-570
NSP5	-7769

Click HERE to show all gene set members

All member genes
GeneID	Gene Rank
PBP2	10052
NSP3	9774
JAL33	9743
JAL35	9736
JAL34	9297
JAL20	7089
JAL14	6127
JAL10	1133
ESP	975
JAL9	-282
JAL8	-334
ATMLP-300B	-570
NSP5	-7769

RNA_REGULATION_OF_TRANSCRIPTION_C2C2(ZN)_GATA_TRANSCRIPTION_FACTOR_FAMILY

RNA_REGULATION_OF_TRANSCRIPTION_C2C2(ZN)_GATA_TRANSCRIPTION_FACTOR_FAMILY
	166
set	RNA_REGULATION_OF_TRANSCRIPTION_C2C2(ZN)_GATA_TRANSCRIPTION_FACTOR_FAMILY
setSize	27
pANOVA	0.000543
s.dist	0.385
p.adjustANOVA	0.0068

Top enriched genes

Top 20 genes
GeneID	Gene Rank
GATA23	10403
GATA7	9941
GATA11	9448
GATA19	9051
GATA5	8957
GATA17	7896
GATA18	7673
GATA22	7627
GATA1	7461
GATA12	7168
GATA6	6924
GATA3	6749
GATA15	6223
GATA21	5540
GATA2	5252
GATA24	5194
GATA10	4692
GATA20	3255
GATA9	3228
AT5G42700	2831

Click HERE to show all gene set members

All member genes
GeneID	Gene Rank
GATA23	10403
GATA7	9941
GATA11	9448
GATA19	9051
GATA5	8957
GATA17	7896
GATA18	7673
GATA22	7627
GATA1	7461
GATA12	7168
GATA6	6924
GATA3	6749
GATA15	6223
GATA21	5540
GATA2	5252
GATA24	5194
GATA10	4692
GATA20	3255
GATA9	3228
AT5G42700	2831
GATA8	2768
GATA16	1197
ZIM	-2244
GATA4	-2808
GATA28	-4720
GATA27	-8103
GATA26	-8602

NOT_ASSIGNED_NO_ONTOLOGY_DC1_DOMAIN_CONTAINING_PROTEIN

NOT_ASSIGNED_NO_ONTOLOGY_DC1_DOMAIN_CONTAINING_PROTEIN
	84
set	NOT_ASSIGNED_NO_ONTOLOGY_DC1_DOMAIN_CONTAINING_PROTEIN
setSize	102
pANOVA	2.12e-11
s.dist	-0.384
p.adjustANOVA	2.79e-09

Top enriched genes

Top 20 genes
GeneID	Gene Rank
AT2G02610	-10135
AT3G13760	-10124
AT5G48320	-10110
AT5G03360	-10089
AT3G26240	-10032
AT3G43890	-10023
AT2G28270	-9967
AT1G44050	-9963
AT3G50010	-9901
AT2G17740	-9879
AT3G48400	-9673
AT5G37210	-9659
AT5G02360	-9609
AT1G44020	-9593
AT2G02680	-9457
AT1G66440	-9401
AT3G28650	-9283
AT4G02540	-9242
AT3G46800	-9049
AT4G13130	-8964

Click HERE to show all gene set members

All member genes
GeneID	Gene Rank
AT2G02610	-10135
AT3G13760	-10124
AT5G48320	-10110
AT5G03360	-10089
AT3G26240	-10032
AT3G43890	-10023
AT2G28270	-9967
AT1G44050	-9963
AT3G50010	-9901
AT2G17740	-9879
AT3G48400	-9673
AT5G37210	-9659
AT5G02360	-9609
AT1G44020	-9593
AT2G02680	-9457
AT1G66440	-9401
AT3G28650	-9283
AT4G02540	-9242
AT3G46800	-9049
AT4G13130	-8964
AT2G02640	-8831
AT3G45840	-8559
AT5G42280	-8394
AT3G26250	-8288
AT5G43520	-8250
AT1G55390	-8247
AT2G37780	-8067
AT4G26380	-7948
AT4G01925	-7910
AT2G40050	-7816
AT4G15070	-7767
AT4G11390	-7750
AT2G37820	-7708
AT2G27660	-7679
AT5G17960	-7168
AT3G27490	-7026
AT4G02180	-6994
AT1G66450	-6878
AT3G46810	-6863
AT1G61840	-6736
AT5G59930	-6720
AT5G45730	-6612
AT3G11402	-6311
AT5G54040	-6118
AT1G55700	-6116
AT1G60420	-6020
AT3G27480	-5601
AT2G02700	-5573
AT5G55770	-5333
AT2G16050	-5124
AT2G02630	-5105
AT2G43220	-5028
AT2G44370	-4815
AT3G27473	-4795
AT5G26190	-4784
AT1G29180	-4481
AT3G13590	-4430
AT3G59120	-4104
AT3G27510	-4047
AT5G54030	-3874
AT3G27500	-3689
AT3G11390	-3609
AT4G11540	-3332
AT4G11550	-2464
AT3G07000	-2379
AT2G44380	-2209
AT4G16015	-2143
AT5G02350	-2099
AT5G40590	-1716
AT3G06990	-1550
AT2G13950	-1187
AT1G55430	-1121
AT4G14980	-1117
AT5G54050	-757
AT4G13992	-435
AT1G20990	71
AT5G01480	249
AT5G59940	382
AT3G45530	400
AT1G55440	422
AT5G22355	1080
AT2G23100	1260
AT4G01350	1262
AT2G13900	1325
AT2G04680	1427
AT5G02340	1455
AT5G44770	1994
AT5G42840	2312
AT3G26550	2514
AT1G65180	3349
AT3G59130	3440
AT2G04500	3945
AT1G69150	5223
AT2G19650	5473
AT5G40320	5547
AT1G62030	5970
AT5G55780	6627
AT3G11385	7203
AT1G55380	7472
AT4G10370	8498
AT2G21830	9641
AT2G19660	9761

PS_LIGHTREACTION_CYCLIC_ELECTRON_FLOW-CHLORORESPIRATION

PS_LIGHTREACTION_CYCLIC_ELECTRON_FLOW-CHLORORESPIRATION
	139
set	PS_LIGHTREACTION_CYCLIC_ELECTRON_FLOW-CHLORORESPIRATION
setSize	12
pANOVA	0.0238
s.dist	0.377
p.adjustANOVA	0.0964

Top enriched genes

Top 20 genes
GeneID	Gene Rank
NDHI	10418.0
NDHH	9599.0
NDHA	9326.0
NDHE	9214.0
NDHB.1	8893.5
NDHB.2	8893.5
PGR5	5567.0
PGRL1A	3347.0
PGRL1B	2474.0
AOX4	-4428.0
NDF2	-5771.0
PIFI	-8245.0

Click HERE to show all gene set members

All member genes
GeneID	Gene Rank
NDHI	10418.0
NDHH	9599.0
NDHA	9326.0
NDHE	9214.0
NDHB.1	8893.5
NDHB.2	8893.5
PGR5	5567.0
PGRL1A	3347.0
PGRL1B	2474.0
AOX4	-4428.0
NDF2	-5771.0
PIFI	-8245.0

RNA_PROCESSING_RNA_HELICASE

RNA_PROCESSING_RNA_HELICASE
	153
set	RNA_PROCESSING_RNA_HELICASE
setSize	33
pANOVA	0.000206
s.dist	-0.373
p.adjustANOVA	0.00323

Top enriched genes

Top 20 genes
GeneID	Gene Rank
RH26	-10084
RH52	-9713
RH3	-9707
RH7	-9385
RH31	-9358
RH47	-9339
AT4G16680	-8481
RH37	-8046
RH14	-7806
AT2G47250	-7464
SDE3	-7067
RH53	-6177
CUV	-5729
RH40	-5708
ESP3	-4973
AT3G62310	-4497
RH11	-3965
RH21	-3881
AT1G27900	-3834
UPF1	-3800

Click HERE to show all gene set members

All member genes
GeneID	Gene Rank
RH26	-10084
RH52	-9713
RH3	-9707
RH7	-9385
RH31	-9358
RH47	-9339
AT4G16680	-8481
RH37	-8046
RH14	-7806
AT2G47250	-7464
SDE3	-7067
RH53	-6177
CUV	-5729
RH40	-5708
ESP3	-4973
AT3G62310	-4497
RH11	-3965
RH21	-3881
AT1G27900	-3834
UPF1	-3800
AT1G55150	-3611
RH25	-2763
MEE29	-2167
BRR2C	-1947
RH42	-1217
RH9	-557
RH35	51
RID1	950
AT5G14610	3960
AT4G18465	3974
RPA1D	6780
AT5G51080	6791
RH48	7148

CELL_WALL_DEGRADATION_MANNAN-XYLOSE-ARABINOSE-FUCOSE

CELL_WALL_DEGRADATION_MANNAN-XYLOSE-ARABINOSE-FUCOSE
	15
set	CELL_WALL_DEGRADATION_MANNAN-XYLOSE-ARABINOSE-FUCOSE
setSize	16
pANOVA	0.0116
s.dist	-0.364
p.adjustANOVA	0.0599

Top enriched genes

Top 20 genes
GeneID	Gene Rank
FXG1	-9825
XTH24	-9805
BGAL2	-9254
MAN6	-8646
FUC1	-8010
BXL1	-7454
BXL6	-7163
XYN5	-4766
ASD1	-4453
RXF12	-4294
BXL4	-3588
BXL2	-2891
MAN7	4008
BXL3	4723
BXL5	6718
BXL7	7166

Click HERE to show all gene set members

All member genes
GeneID	Gene Rank
FXG1	-9825
XTH24	-9805
BGAL2	-9254
MAN6	-8646
FUC1	-8010
BXL1	-7454
BXL6	-7163
XYN5	-4766
ASD1	-4453
RXF12	-4294
BXL4	-3588
BXL2	-2891
MAN7	4008
BXL3	4723
BXL5	6718
BXL7	7166

NOT_ASSIGNED_NO_ONTOLOGY_PENTATRICOPEPTIDE_(PPR)_REPEAT-CONTAINING_PROTEIN

NOT_ASSIGNED_NO_ONTOLOGY_PENTATRICOPEPTIDE_(PPR)_REPEAT-CONTAINING_PROTEIN
	89
set	NOT_ASSIGNED_NO_ONTOLOGY_PENTATRICOPEPTIDE_(PPR)_REPEAT-CONTAINING_PROTEIN
setSize	425
pANOVA	7.36e-38
s.dist	-0.363
p.adjustANOVA	1.93e-35

Top enriched genes

Top 20 genes
GeneID	Gene Rank
PCMP-H81	-10156
PCMP-E95	-9961
AT5G02860	-9913
PCMP-H91	-9842
ABO5	-9828
AT1G13040	-9824
PGR3	-9808
EMB2744	-9756
PCMP-H52	-9692
AT1G63130	-9681
PCMP-E16	-9608
PCMP-E74	-9544
PCMP-A2	-9527
PCMP-H8	-9479
PCMP-E75	-9462
PCMP-E68	-9449
PCMP-A1	-9444
AT1G03100	-9425
DOT4	-9403
AT2G18940	-9361

Click HERE to show all gene set members

All member genes
GeneID	Gene Rank
PCMP-H81	-10156
PCMP-E95	-9961
AT5G02860	-9913
PCMP-H91	-9842
ABO5	-9828
AT1G13040	-9824
PGR3	-9808
EMB2744	-9756
PCMP-H52	-9692
AT1G63130	-9681
PCMP-E16	-9608
PCMP-E74	-9544
PCMP-A2	-9527
PCMP-H8	-9479
PCMP-E75	-9462
PCMP-E68	-9449
PCMP-A1	-9444
AT1G03100	-9425
DOT4	-9403
AT2G18940	-9361
MEE40	-9350
PRORP1	-9306
DYW10	-9295
PCMP-H24	-9231
PCMP-H27	-9223
AT3G59040	-9218
PCMP-H57	-9204
OTP51	-9160
PCMP-E99	-9136
AT2G01390	-9101
PCMP-H87	-9094
AT1G19290	-9078
AT5G25630	-9030
EMB2453	-9010
EMB976	-8983
RPF2	-8982
PCMP-H40	-8953
DG1	-8950
PCMP-E34	-8949
PCMP-E13	-8937
AT1G31840	-8807
PCMP-H33	-8798
PCMP-A4	-8727
PCMP-E31	-8684
PCMP-E7	-8672
PCMP-A3	-8564
AT2G36240	-8535
PPR4	-8507
AT3G23020	-8503
PCMP-E49	-8495
AT3G04760	-8439
AT5G14770	-8401
EMB2758	-8374
PCMP-H29	-8354
PCMP-A6	-8310
PCMP-H5	-8253
PCMP-E94	-8227
PCMP-H3	-8196
CRR21	-8190
AT1G09680	-8189
PCMP-E15	-8185
AT1G79540	-8172
AT5G28460	-8160
AT5G18475	-8151
LOI1	-8095
AT1G16830	-8076
AT3G22690	-8073
PCMP-E76	-8057
PCMP-E98	-8045
PCMP-E51	-8042
AT4G01570	-8023
AT3G09040	-7997
PCMP-E23	-7992
AT1G06710	-7990
PCMP-H73	-7968
PCMP-E63	-7961
PCMP-E93	-7949
PCMP-E87	-7940
AT1G71060	-7928
AT1G02060	-7914
AT1G68980	-7876
PCMP-E8	-7786
AT1G16480	-7779
PCMP-H49	-7757
PCMP-E55	-7742
PCMP-E85	-7717
PCMP-E53	-7713
PCMP-A5	-7712
PCMP-E27	-7696
PCMP-H47	-7584
AT1G05600	-7576
PCMP-E43	-7565
PCMP-H43	-7529
CRR2	-7528
PCMP-H15	-7508
EMB2261	-7469
AT3G60980	-7452
AT1G03560	-7425
PCMP-E101	-7420
PCMP-H17	-7354
AT2G17525	-7313
AT3G18020	-7302
PCMP-E86	-7293
GUN1	-7284
AT1G63630	-7250
AT3G62470	-7220
PCMP-H34	-7181
PCMP-H60	-7083
AT5G61370	-7073
PCMP-E56	-7058
PCMP-E89	-6928
AT2G48000	-6894
AT3G49140	-6840
AT4G30825	-6828
EMB975	-6819
EMB1006	-6816
AT4G14190	-6815
AT5G62370	-6814
AT4G19890	-6788
AT1G62914	-6776
PCMP-E32	-6745
MRL1	-6655
AT3G16710	-6633
PCMP-H83	-6620
AT5G39980	-6575
PCMP-E26	-6563
AT5G08310	-6512
EMB175	-6501
AT1G62720	-6476
Phox2	-6468
PCMP-E47	-6452
AT1G80880	-6424
PCMP-H31	-6358
PCMP-E2	-6347
AT1G63150	-6341
PCMP-H79	-6333
AT1G53330	-6320
PCMP-E20	-6318
PCMP-H86	-6316
PCMP-H42	-6308
PCMP-E67	-6299
PCMP-E61	-6285
AT3G58590	-6188
PCMP-H92	-6179
PCMP-E36	-6164
P67	-6153
PCMP-H84	-6139
PCMP-H1	-6122
AT4G01400	-6100
AT3G61520	-6089
PCMP-E83	-6087
AT3G13150	-6081
AT5G14080	-6059
PCMP-H85	-6037
AT1G63320	-5993
PCMP-E1	-5987
PCMP-E77	-5957
AT1G63330	-5954
PCMP-E40	-5926
PCMP-H32	-5920
AT3G15200	-5891
DYW9	-5809
AT5G59900	-5777
AT2G17033	-5762
AT1G79080	-5760
AT3G61170	-5744
AT1G62350	-5743
AT1G09900	-5734
CRP1	-5697
PCMP-E69	-5684
AT4G26680	-5604
PCMP-H28	-5551
AT5G61990	-5547
AT5G61400	-5518
PCMP-E28	-5447
PCMP-E3	-5403
AT2G38420	-5378
AT4G28010	-5354
PCMP-E65	-5348
PCMP-E10	-5347
AT5G11310	-5285
AT1G74580	-5282
PCMP-E57	-5277
AT2G44880	-5257
PCMP-H80	-5218
AT3G46610	-5159
AT2G32630	-5149
PCMP-H37	-5135
ETO1	-5125
AT1G13410	-5096
AT1G52620	-5082
AT5G46100	-5011
AT1G62590	-4988
AT1G23450	-4984
PCMP-H76	-4948
AT2G26790	-4936
AT1G13800	-4881
PCMP-H41	-4867
AT3G09060	-4845
PCMP-E50	-4829
AT5G16640	-4825
PCMP-E35	-4776
PCMP-H65	-4719
AT3G14580	-4717
AT1G77405	-4716
PCMP-E82	-4710
AT5G46680	-4676
AT5G65820	-4666
AT2G02150	-4628
AT1G12300	-4623
AT5G15280	-4620
PCMP-H38	-4617
PCMP-H53	-4606
PCMP-H35	-4600
PCMP-E105	-4547
PCMP-H75	-4489
DYW7	-4477
AT4G21170	-4460
AT1G73710	-4458
AT4G19440	-4357
AT1G80150	-4351
PCMP-H58	-4344
PCMP-H66	-4264
AT3G42630	-4245
AT1G26460	-4223
AT1G61690	-4180
PCMP-E90	-4135
AT2G01740	-4101
PCMP-E6	-4092
AT5G18390	-4091
PCMP-H82	-4005
PCMP-E46	-3931
EOL2	-3909
PCMP-E33	-3906
PCMP-E4	-3849
AT5G40400	-3839
AT2G20720	-3832
AT2G33680	-3828
EMB1417	-3823
AT1G77360	-3686
AT2G16880	-3597
AT4G26800	-3589
AT5G06400	-3566
AT5G66631	-3557
AT1G13630	-3556
AT1G22960	-3461
CBSPPR1	-3454
AT1G80550	-3402
AT1G26500	-3385
PCMP-E102	-3322
PCMP-H61	-3301
ELI1	-3159
PCMP-E21	-3148
AT1G73400	-3124
PCMP-H90	-3095
AT5G65560	-3078
PCMP-E17	-3069
AT1G10910	-2999
PDE247	-2877
AT5G43820	-2862
PCMP-E5	-2841
AT5G01110	-2699
AT1G69290	-2684
AT3G04130	-2647
AT3G48810	-2606
PCMP-E37	-2602
PCMP-E58	-2589
AT1G08610	-2508
AT1G12620	-2501
AT5G24830	-2430
AT1G09820	-2425
PCMP-E22	-2386
PCMP-H89	-2378
AT1G02420	-2320
AT4G38150	-2310
AT2G17140	-2200
PCMP-H18	-2172
AT3G06920	-2151
AT5G18950	-2137
AT5G57250	-2126
AT3G25210	-2092
AT2G06000	-2081
PCMP-E64	-2071
AT3G62540	-2052
AT1G66345	-2034
AT2G37230	-1888
AT5G16420	-1873
PCMP-H11	-1867
PCMP-E12	-1838
PCMP-H6	-1755
AT3G60050	-1697
AT3G54980	-1690
PCMP-E103	-1683
PCMP-H70	-1658
EOL1	-1577
GRP23	-1562
AT1G74630	-1549
PCMP-H22	-1535
PCMP-E25	-1531
EMB1025	-1510
PCMP-E73	-1504
PCMP-H12	-1384
AT1G06580	-1258
AT5G28380	-1174
AT3G51320	-1166
PCMP-H23	-1151
AT3G61360	-1115
AT1G06270	-1090
AT1G52640	-1002
AT1G11710	-997
AT1G63070	-922
PCMP-E29	-840
EMB1796	-784
PCMP-E92	-723
PCMP-E79	-691
PCMP-H51	-604
AT1G76280	-395
PCMP-E80	-257
AT2G35130	-212
AT2G30780	-124
PCMP-E41	-119
AT3G56030	-26
AT5G27300	-20
EMB2076	-12
AT2G15980	54
AT1G63400	131
AT1G62680	158
EMB2745	229
AT1G64100	405
LOJ	438
PCMP-H59	485
AT1G07740	511
PCMP-H26	560
AT5G37130	604
PCMP-H36	641
PCMP-E52	663
AT5G14820	738
AT1G11630	841
AT1G20300	857
AT1G18900	863
PCMP-E70	869
AT2G15630	915
AT1G71210	1006
PCMP-E30	1031
NFD5	1173
AT1G62930	1187
AT5G55840	1313
AT3G53170	1333
AT1G63080	1338
AT5G41170	1345
PCMP-E72	1367
PCMP-E24	1567
AT5G15980	1621
PCMP-H69	1642
PCMP-E91	1716
AT4G17616	1750
AT2G17670	1752
AT3G22470	1792
AT5G64320	1887
AT5G15010	1924
AT2G40240	1957
AT3G07290	1968
AT1G04590	1973
AT3G22670	1997
AT5G12100	2025
PCMP-E44	2030
AT4G20740	2069
AT3G49730	2116
AT3G02490	2167
PCMP-E38	2178
PCMP-H88	2207
PCMP-H21	2214
AT3G02650	2347
LPA1	2363
AT3G48250	2377
AT3G60960	2397
AT4G35850	2422
PCMP-H13	2521
AT5G48730	2537
AT1G01970	2615
AT5G13770	2662
PCMP-E45	2732
AT4G04790	2763
AT3G16010	2844
PCMP-E84	2956
PCMP-H63	3062
PCMP-H68	3105
AT1G30290	3319
PCMP-E14	3398
PCMP-E66	3407
PCMP-H44	3409
AT5G02830	3520
PCMP-E78	3664
AT4G36680	3997
PCMP-E48	4199
AT1G63230	4261
AT5G47360	4399
AT4G21880	4486
AT1G55630	4602
AT2G28050	4670
AT2G19280	4809
PCMP-E96	4940
PCMP-H67	5045
AT3G13160	5052
AT2G27800	5168
AT4G11690	5310
OTP43	5361
PCMP-E54	5413
AT1G11900	5440
PPR40	5468
AT1G55890	5663
PPR336	5865
PCMP-E71	6142
PCMP-E100	6154
AT4G18975	6173
AT1G64580	6234
PNM1	6239
AT5G38730	6302
AT3G46870	7234
PCMP-E42	7335
PCMP-H64	7565
AtHip1	8505
AT5G28340	8665
AT2G18520	9036
TL20.3	9082

RNA_REGULATION_OF_TRANSCRIPTION_CHROMATIN_REMODELING_FACTORS

RNA_REGULATION_OF_TRANSCRIPTION_CHROMATIN_REMODELING_FACTORS
	170
set	RNA_REGULATION_OF_TRANSCRIPTION_CHROMATIN_REMODELING_FACTORS
setSize	35
pANOVA	0.000209
s.dist	-0.362
p.adjustANOVA	0.00323

Top enriched genes

Top 20 genes
GeneID	Gene Rank
CHR10	-9970
PIE1	-9677
CHR18	-8455
SWI3B	-8039
CHR8	-7826
AT1G11100	-7738
SWI3A	-6906
CHR28	-6596
RAD5	-6545
SWI3C	-6469
ATRX	-6397
CHC1	-5983
AT3G54460	-5696
CHR11	-5597
CLSY2	-5380
RGD3	-5029
AT2G40770	-4861
EDA16	-4341
BSH	-4337
DRD1	-4273

Click HERE to show all gene set members

All member genes
GeneID	Gene Rank
CHR10	-9970
PIE1	-9677
CHR18	-8455
SWI3B	-8039
CHR8	-7826
AT1G11100	-7738
SWI3A	-6906
CHR28	-6596
RAD5	-6545
SWI3C	-6469
ATRX	-6397
CHC1	-5983
AT3G54460	-5696
CHR11	-5597
CLSY2	-5380
RGD3	-5029
AT2G40770	-4861
EDA16	-4341
BSH	-4337
DRD1	-4273
MOM	-3964
CHB3	-3710
BRM	-3272
CHR23	-3265
CHR24	-1986
CHR27	-1679
AT5G05130	-736
CLSY3	-320
AT1G05120	231
DDM1	1331
EBS	1461
CLSY4	3394
CHR12	4154
AT1G49520	6200
AT5G07810	7346

MITOCHONDRIAL_ELECTRON_TRANSPORT_/_ATP_SYNTHESIS_CYTOCHROME_C_OXIDASE

MITOCHONDRIAL_ELECTRON_TRANSPORT_/_ATP_SYNTHESIS_CYTOCHROME_C_OXIDASE
	75
set	MITOCHONDRIAL_ELECTRON_TRANSPORT_/_ATP_SYNTHESIS_CYTOCHROME_C_OXIDASE
setSize	25
pANOVA	0.00188
s.dist	0.359
p.adjustANOVA	0.015

Top enriched genes

Top 20 genes
GeneID	Gene Rank
COX1	9963
COX6B-1	9851
AT2G07687	9255
AT3G62400	9023
COX5B-1	8995
AT2G47380	8630
COX5B-2	8578
COX3	7798
AT5G61310	7349
AT1G48510	7161
AT1G52710	5901
ATCOX19-1	5657
SURF1	5610
AT4G37830	5606
COX6B-3	4989
COX11	3564
COX19-2	2405
COX2	1543
HCC1	-572
AT1G09794	-575

Click HERE to show all gene set members

All member genes
GeneID	Gene Rank
COX1	9963
COX6B-1	9851
AT2G07687	9255
AT3G62400	9023
COX5B-1	8995
AT2G47380	8630
COX5B-2	8578
COX3	7798
AT5G61310	7349
AT1G48510	7161
AT1G52710	5901
ATCOX19-1	5657
SURF1	5610
AT4G37830	5606
COX6B-3	4989
COX11	3564
COX19-2	2405
COX2	1543
HCC1	-572
AT1G09794	-575
AT1G57600	-1015
COX6B-2	-3807
HCC2	-4730
AT2G07695	-5693
AT1G28140	-7411

PROTEIN_DEGRADATION_AUTOPHAGY

PROTEIN_DEGRADATION_AUTOPHAGY
	101
set	PROTEIN_DEGRADATION_AUTOPHAGY
setSize	22
pANOVA	0.00417
s.dist	-0.353
p.adjustANOVA	0.0289

Top enriched genes

Top 20 genes
GeneID	Gene Rank
ATG18G	-9868
ATG7	-8305
ATG9	-6968
ATG10	-6933
ATG4B	-6927
ATG18F	-6774
ATG3	-6534
ATG8B	-5745
ATG8E	-5344
ATG18H	-4612
ATG4A	-4520
ATG18C	-3625
ATG8H	-2258
ATG8G	-1978
ATG8F	-1966
ATG18D	-1091
APG8A	-825
ATG8C	56
ATG5	1259
ATG12A	1280

Click HERE to show all gene set members

All member genes
GeneID	Gene Rank
ATG18G	-9868
ATG7	-8305
ATG9	-6968
ATG10	-6933
ATG4B	-6927
ATG18F	-6774
ATG3	-6534
ATG8B	-5745
ATG8E	-5344
ATG18H	-4612
ATG4A	-4520
ATG18C	-3625
ATG8H	-2258
ATG8G	-1978
ATG8F	-1966
ATG18D	-1091
APG8A	-825
ATG8C	56
ATG5	1259
ATG12A	1280
ATG8I	1330
ATG12B	3899

PS_LIGHTREACTION_NADH_DH

PS_LIGHTREACTION_NADH_DH
	140
set	PS_LIGHTREACTION_NADH_DH
setSize	12
pANOVA	0.0391
s.dist	0.344
p.adjustANOVA	0.134

Top enriched genes

Top 20 genes
GeneID	Gene Rank
NDHC	10575
NDHF	10570
NDHK	10528
NDHG	10447
NDHJ	9380
NDHD	9055
ndhO	2247
ndhN	-1381
ndhL	-2376
NDHM	-2703
AT4G37920	-4493
CRR3	-6651

Click HERE to show all gene set members

All member genes
GeneID	Gene Rank
NDHC	10575
NDHF	10570
NDHK	10528
NDHG	10447
NDHJ	9380
NDHD	9055
ndhO	2247
ndhN	-1381
ndhL	-2376
NDHM	-2703
AT4G37920	-4493
CRR3	-6651

LIPID_METABOLISM_EXOTICS(STEROIDS,_SQUALENE_ETC)

LIPID_METABOLISM_EXOTICS(STEROIDS,_SQUALENE_ETC)
	41
set	LIPID_METABOLISM_EXOTICS(STEROIDS,_SQUALENE_ETC)
setSize	16
pANOVA	0.0191
s.dist	0.338
p.adjustANOVA	0.085

Top enriched genes

Top 20 genes
GeneID	Gene Rank
SOT15	10482
SOT14	9375
SOT8	8823
ERG28	8799
SOT6	8703
AT4G27270	8571
AT3G45070	7988
SOT10	7274
SOT7	5474
FQR1	5303
SOT11	1729
AT4G36750	-720
AT5G58800	-2063
ATSCP2	-5209
ECH2	-5670
SOT1	-9515

Click HERE to show all gene set members

All member genes
GeneID	Gene Rank
SOT15	10482
SOT14	9375
SOT8	8823
ERG28	8799
SOT6	8703
AT4G27270	8571
AT3G45070	7988
SOT10	7274
SOT7	5474
FQR1	5303
SOT11	1729
AT4G36750	-720
AT5G58800	-2063
ATSCP2	-5209
ECH2	-5670
SOT1	-9515

SIGNALLING_PHOSPHINOSITIDES

SIGNALLING_PHOSPHINOSITIDES
	214
set	SIGNALLING_PHOSPHINOSITIDES
setSize	15
pANOVA	0.0237
s.dist	-0.337
p.adjustANOVA	0.0964

Top enriched genes

Top 20 genes
GeneID	Gene Rank
AT1G27570	-9562
PCAP1	-9541
AT2G15900	-9354
SAC1	-8090
AT1G64460	-7211
AT4G36080	-5046
AT2G17930	-4749
SAC4	-4515
PI4KA1	-3134
SAC5	-2733
SAC9	-2617
PI4KG7	1894
PH1	2770
SAC8	3846
SAC2	8329

Click HERE to show all gene set members

All member genes
GeneID	Gene Rank
AT1G27570	-9562
PCAP1	-9541
AT2G15900	-9354
SAC1	-8090
AT1G64460	-7211
AT4G36080	-5046
AT2G17930	-4749
SAC4	-4515
PI4KA1	-3134
SAC5	-2733
SAC9	-2617
PI4KG7	1894
PH1	2770
SAC8	3846
SAC2	8329

MISC_GLUCO-,_GALACTO-_AND_MANNOSIDASES_BETA-GALACTOSIDASE

MISC_GLUCO-,_GALACTO-_AND_MANNOSIDASES_BETA-GALACTOSIDASE
	61
set	MISC_GLUCO-,_GALACTO-_AND_MANNOSIDASES_BETA-GALACTOSIDASE
setSize	14
pANOVA	0.03
s.dist	-0.335
p.adjustANOVA	0.113

Top enriched genes

Top 20 genes
GeneID	Gene Rank
BGAL2	-9254
BGAL14	-8984
BGAL10	-8381
BGAL6	-7671
BGAL8	-4708
BGAL16	-4325
BGAL1	-4186
BGAL9	-3961
BGAL12	-3789
BGAL4	-2407
BGAL7	282
BGAL17	1671
BGAL5	3159
BGAL3	6492

Click HERE to show all gene set members

All member genes
GeneID	Gene Rank
BGAL2	-9254
BGAL14	-8984
BGAL10	-8381
BGAL6	-7671
BGAL8	-4708
BGAL16	-4325
BGAL1	-4186
BGAL9	-3961
BGAL12	-3789
BGAL4	-2407
BGAL7	282
BGAL17	1671
BGAL5	3159
BGAL3	6492

NUCLEOTIDE_METABOLISM_SALVAGE_NUDIX_HYDROLASES

NUCLEOTIDE_METABOLISM_SALVAGE_NUDIX_HYDROLASES
	95
set	NUCLEOTIDE_METABOLISM_SALVAGE_NUDIX_HYDROLASES
setSize	24
pANOVA	0.0046
s.dist	0.334
p.adjustANOVA	0.0299

Top enriched genes

Top 20 genes
GeneID	Gene Rank
NUDT6	10546
atnudt8	10543
ATNUDT10	10357
NUDT18	10265
NUDT17	9602
AtNUDT7	9413
NUDT19	7899
NUDT13	7799
NUDT16	6228
ATNUDT15	5588
NUDT14	5445
NUDT1	5412
NUDT9	4845
NUDT12	4636
NUDT11	3476
NUDT20	800
NUDT5	325
atnudt22	169
NUDT24	106
NUDT3	-74

Click HERE to show all gene set members

All member genes
GeneID	Gene Rank
NUDT6	10546
atnudt8	10543
ATNUDT10	10357
NUDT18	10265
NUDT17	9602
AtNUDT7	9413
NUDT19	7899
NUDT13	7799
NUDT16	6228
ATNUDT15	5588
NUDT14	5445
NUDT1	5412
NUDT9	4845
NUDT12	4636
NUDT11	3476
NUDT20	800
NUDT5	325
atnudt22	169
NUDT24	106
NUDT3	-74
ATNUDT2	-3699
NUDT23	-6764
NUDT21	-6838
NUDT4	-8171

TRANSPORT_METABOLITE_TRANSPORTERS_AT_THE_ENVELOPE_MEMBRANE

TRANSPORT_METABOLITE_TRANSPORTERS_AT_THE_ENVELOPE_MEMBRANE
	250
set	TRANSPORT_METABOLITE_TRANSPORTERS_AT_THE_ENVELOPE_MEMBRANE
setSize	26
pANOVA	0.00356
s.dist	0.33
p.adjustANOVA	0.026

Top enriched genes

Top 20 genes
GeneID	Gene Rank
BT1	10279
AT1G12500	9013
PPT2	8779
AAC1	8748
PPT1	8203
AT1G43310	6856
AT4G32390	6677
AT1G48230	5847
AT2G25520	5744
AT1G53660	5083
MEX1	4997
AT5G11230	4936
GPT2	4800
AT3G10290	4652
UUAT1	4578
AT4G03950	4529
GPT1	4496
XPT	3954
AT3G11320	2254
AT3G17430	1739

Click HERE to show all gene set members

All member genes
GeneID	Gene Rank
BT1	10279
AT1G12500	9013
PPT2	8779
AAC1	8748
PPT1	8203
AT1G43310	6856
AT4G32390	6677
AT1G48230	5847
AT2G25520	5744
AT1G53660	5083
MEX1	4997
AT5G11230	4936
GPT2	4800
AT3G10290	4652
UUAT1	4578
AT4G03950	4529
GPT1	4496
XPT	3954
AT3G11320	2254
AT3G17430	1739
AT5G05820	832
DIT1	-426
UDP-GALT1	-1030
AT3G14410	-4426
AT1G06470	-7607
APE2	-9347

PROTEIN_POSTRANSLATIONAL_MODIFICATION_KINASE_RECEPTOR_LIKE_CYTOPLASMATIC_KINASE_IX

PROTEIN_POSTRANSLATIONAL_MODIFICATION_KINASE_RECEPTOR_LIKE_CYTOPLASMATIC_KINASE_IX
	119
set	PROTEIN_POSTRANSLATIONAL_MODIFICATION_KINASE_RECEPTOR_LIKE_CYTOPLASMATIC_KINASE_IX
setSize	12
pANOVA	0.0479
s.dist	-0.33
p.adjustANOVA	0.155

Top enriched genes

Top 20 genes
GeneID	Gene Rank
AT5G51270	-9995
AT5G65500	-9195
AT2G19410	-7976
PUB33	-7964
PUB35	-6976
AT3G26700	-6808
PUB32	-4468
AT1G78940	-3869
AT4G31230	88
AT3G20200	5267
AT1G72760	6341
AT5G61550	6709

Click HERE to show all gene set members

All member genes
GeneID	Gene Rank
AT5G51270	-9995
AT5G65500	-9195
AT2G19410	-7976
PUB33	-7964
PUB35	-6976
AT3G26700	-6808
PUB32	-4468
AT1G78940	-3869
AT4G31230	88
AT3G20200	5267
AT1G72760	6341
AT5G61550	6709

PROTEIN_TARGETING_MITOCHONDRIA

PROTEIN_TARGETING_MITOCHONDRIA
	132
set	PROTEIN_TARGETING_MITOCHONDRIA
setSize	31
pANOVA	0.00163
s.dist	0.327
p.adjustANOVA	0.0143

Top enriched genes

Top 20 genes
GeneID	Gene Rank
TIM13	9798
TIM8	9420
TOM20-2	9057
TIM23-2	8906
TIM10	8770
ATOEP16-3	8763
TIM22-1	8677
TOM40-1	8655
TOM9-2	8355
TOM9-1	8177
AT3G25120	7848
TIM17-3	7131
TIM9	7040
MTX1	7022
OXA1L	6433
MPPA2	6034
TOM20-3	5687
TOM20-1	4803
TOM20-4	3457
TIM22-3	3354

Click HERE to show all gene set members

All member genes
GeneID	Gene Rank
TIM13	9798
TIM8	9420
TOM20-2	9057
TIM23-2	8906
TIM10	8770
ATOEP16-3	8763
TIM22-1	8677
TOM40-1	8655
TOM9-2	8355
TOM9-1	8177
AT3G25120	7848
TIM17-3	7131
TIM9	7040
MTX1	7022
OXA1L	6433
MPPA2	6034
TOM20-3	5687
TOM20-1	4803
TOM20-4	3457
TIM22-3	3354
ALB3L3	3089
AT1G51980	2938
TIM44-2	1453
TIM23-1	-354
MPPBETA	-1409
OEP164	-5224
TIM17-1	-6767
TIM22-2	-6873
TIM17-2	-7434
HP30-1	-7807
HP30-2	-7823

PROTEIN_DEGRADATION_METALLOPROTEASE

PROTEIN_DEGRADATION_METALLOPROTEASE
	103
set	PROTEIN_DEGRADATION_METALLOPROTEASE
setSize	38
pANOVA	0.000511
s.dist	-0.326
p.adjustANOVA	0.00673

Top enriched genes

Top 20 genes
GeneID	Gene Rank
FTSHI5	-9587
AT5G35690	-9161
FTSH12	-8958
FTSHI2	-8915
MAP1B	-8768
VAR2	-8695
PXM16	-8641
MAP1C	-8606
PREP1	-8438
FTSH5	-7952
1MMP	-7349
2MMP	-7330
FTSH7	-7155
4MMP	-6656
FTSHI1	-6579
FTSH6	-5027
AT2G20725	-4282
ICP55	-3662
ARASP2	-3486
AT5G42320	-3442

Click HERE to show all gene set members

All member genes
GeneID	Gene Rank
FTSHI5	-9587
AT5G35690	-9161
FTSH12	-8958
FTSHI2	-8915
MAP1B	-8768
VAR2	-8695
PXM16	-8641
MAP1C	-8606
PREP1	-8438
FTSH5	-7952
1MMP	-7349
2MMP	-7330
FTSH7	-7155
4MMP	-6656
FTSHI1	-6579
FTSH6	-5027
AT2G20725	-4282
ICP55	-3662
ARASP2	-3486
AT5G42320	-3442
FTSH1	-3226
AT3G57470	-2672
FTSH11	-2128
FTSH4	-1735
AT5G56730	-1655
MAP1D	-1163
FACE2	276
MAP2B	432
EGY3	953
ARASP	1213
FTSH10	1511
MAP1A	1555
FTSH8	1634
3MMP	2133
FTSH9	2224
MAP2A	5638
5MMP	5951
AT3G57460	10505

RNA_REGULATION_OF_TRANSCRIPTION_PHD_FINGER_TRANSCRIPTION_FACTOR

RNA_REGULATION_OF_TRANSCRIPTION_PHD_FINGER_TRANSCRIPTION_FACTOR
	186
set	RNA_REGULATION_OF_TRANSCRIPTION_PHD_FINGER_TRANSCRIPTION_FACTOR
setSize	10
pANOVA	0.0769
s.dist	-0.323
p.adjustANOVA	0.21

Top enriched genes

Top 20 genes
GeneID	Gene Rank
IDM1	-8716
AT3G53680	-8030
AT5G12400	-6364
AT3G51120	-5288
AT1G05380	-4954
AT4G14920	-3769
AT5G58610	-3441
AT2G36720	-3127
MS1	4522
AT1G43770	7491

Click HERE to show all gene set members

All member genes
GeneID	Gene Rank
IDM1	-8716
AT3G53680	-8030
AT5G12400	-6364
AT3G51120	-5288
AT1G05380	-4954
AT4G14920	-3769
AT5G58610	-3441
AT2G36720	-3127
MS1	4522
AT1G43770	7491

MISC_PLASTOCYANIN-LIKE

MISC_PLASTOCYANIN-LIKE
	70
set	MISC_PLASTOCYANIN-LIKE
setSize	24
pANOVA	0.00695
s.dist	0.318
p.adjustANOVA	0.0406

Top enriched genes

Top 20 genes
GeneID	Gene Rank
ENODL8	10125
ENODL13	10094
ENODL17	10044
ENODL15	9994
ENODL14	9552
ENODL2	9498
ENODL18	9230
UCC2	9118
AT5G26330	8437
ENODL19	6690
AT1G72230	5879
AT3G27200	5584
ENODL1	4330
UCC3	3577
ENODL16	3060
ENODL9	2141
AT1G22480	1209
ENODL20	-1101
AT5G07475	-2545
ENODL10	-3261

Click HERE to show all gene set members

All member genes
GeneID	Gene Rank
ENODL8	10125
ENODL13	10094
ENODL17	10044
ENODL15	9994
ENODL14	9552
ENODL2	9498
ENODL18	9230
UCC2	9118
AT5G26330	8437
ENODL19	6690
AT1G72230	5879
AT3G27200	5584
ENODL1	4330
UCC3	3577
ENODL16	3060
ENODL9	2141
AT1G22480	1209
ENODL20	-1101
AT5G07475	-2545
ENODL10	-3261
AT4G01380	-3955
AT5G14350	-6581
ARPN	-8406
BCB	-8767

RNA_REGULATION_OF_TRANSCRIPTION_HISTONE_ACETYLTRANSFERASES

RNA_REGULATION_OF_TRANSCRIPTION_HISTONE_ACETYLTRANSFERASES
	177
set	RNA_REGULATION_OF_TRANSCRIPTION_HISTONE_ACETYLTRANSFERASES
setSize	18
pANOVA	0.0221
s.dist	-0.312
p.adjustANOVA	0.0959

Top enriched genes

Top 20 genes
GeneID	Gene Rank
MRG2	-8904
ADA2B	-8625
HAC5	-8243
HAC04	-7916
HAC2	-7888
HAC12	-5483
HAG3	-4440
MRG1	-3274
HAC1	-3198
TAF1	-2644
HAM1	-2599
ELP1	-2478
AT1G03650	-1080
HAG1	-759
HAM2	-117
ADA2A	2493
AT1G16705	5069
HAG2	5220

Click HERE to show all gene set members

All member genes
GeneID	Gene Rank
MRG2	-8904
ADA2B	-8625
HAC5	-8243
HAC04	-7916
HAC2	-7888
HAC12	-5483
HAG3	-4440
MRG1	-3274
HAC1	-3198
TAF1	-2644
HAM1	-2599
ELP1	-2478
AT1G03650	-1080
HAG1	-759
HAM2	-117
ADA2A	2493
AT1G16705	5069
HAG2	5220

MISC_GLUTATHIONE_S_TRANSFERASES

MISC_GLUTATHIONE_S_TRANSFERASES
	63
set	MISC_GLUTATHIONE_S_TRANSFERASES
setSize	53
pANOVA	9.51e-05
s.dist	0.31
p.adjustANOVA	0.00227

Top enriched genes

Top 20 genes
GeneID	Gene Rank
GSTU6	10576
GSTF9	10568
GSTU25	10562
GSTF10	10557
GSTU14	10402
GSTU8	10375
GSTF8	10349
GSTL1	10336
GSTU5	10273
GSTU1	10216
GSTU22	10174
GSTU4	10086
GSTU2	9999
GSTU26	9938
GSTU24	9852
AT4G19880	9836
GSTF11	9591
GSTU7	9577
GSTU17	9349
GSTU13	9104

Click HERE to show all gene set members

All member genes
GeneID	Gene Rank
GSTU6	10576
GSTF9	10568
GSTU25	10562
GSTF10	10557
GSTU14	10402
GSTU8	10375
GSTF8	10349
GSTL1	10336
GSTU5	10273
GSTU1	10216
GSTU22	10174
GSTU4	10086
GSTU2	9999
GSTU26	9938
GSTU24	9852
AT4G19880	9836
GSTF11	9591
GSTU7	9577
GSTU17	9349
GSTU13	9104
GSTU18	8106
GSTF3	7870
GSTU19	7703
GSTF13	7496
TCHQD	6180
GSTU20	6014
GSTU10	5825
GSTT1	5070
ATGSTZ1	3335
GSTU16	3165
GSTF6	3091
GSTF12	3084
GSTU23	2170
GSTF2	1993
GSTU27	1476
GSTZ2	1242
GSTT3	474
GSTL2	-130
AT1G65820	-567
GSTF7	-1880
GSTU12	-3099
GSTT2	-3616
GSTL3	-3914
GSTU28	-5327
ATGSTU21	-5937
PER5	-7075
AT5G44000	-8125
ATGSTF4	-8339
GSTU11	-8661
PER4	-9514
GSTU9	-9618
GSTU3	-9686
GSTF14	-10014

NOT_ASSIGNED_NO_ONTOLOGY_GLYCINE_RICH_PROTEINS

NOT_ASSIGNED_NO_ONTOLOGY_GLYCINE_RICH_PROTEINS
	87
set	NOT_ASSIGNED_NO_ONTOLOGY_GLYCINE_RICH_PROTEINS
setSize	54
pANOVA	0.000107
s.dist	-0.305
p.adjustANOVA	0.00235

Top enriched genes

Top 20 genes
GeneID	Gene Rank
AT4G18280	-10117
AT1G07135	-9911
GRDP2	-9746
AT5G47020	-9675
AT1G27710	-9634
AT5G17650	-9511
AT5G61660	-9494
HIPP33	-9265
AT5G49350	-8698
GRDP1	-8688
AT1G15280	-8617
AT1G27090	-8487
AT4G21620	-8364
AT3G04640	-8271
AT4G15150	-8203
GRP3	-7883
AT5G46730	-7848
AT4G22740	-7689
P23-1	-7678
AT1G75550	-7433

Click HERE to show all gene set members

All member genes
GeneID	Gene Rank
AT4G18280	-10117
AT1G07135	-9911
GRDP2	-9746
AT5G47020	-9675
AT1G27710	-9634
AT5G17650	-9511
AT5G61660	-9494
HIPP33	-9265
AT5G49350	-8698
GRDP1	-8688
AT1G15280	-8617
AT1G27090	-8487
AT4G21620	-8364
AT3G04640	-8271
AT4G15150	-8203
GRP3	-7883
AT5G46730	-7848
AT4G22740	-7689
P23-1	-7678
AT1G75550	-7433
AT2G05580	-7239
OPSL1	-6662
TGD5	-6510
AT3G59640	-6324
AT1G04660	-6250
AT4G29020	-6051
AT5G28630	-5520
AT4G37682	-5509
AT4G17620	-5163
AT4G08230	-4842
AT2G05540	-2945
AT4G36230	-2807
AT3G06780	-2596
GRP3S	-2591
GRP23	-1562
AT5G11700	-975
DOT1	-924
AT1G67870	676
AT1G04800	888
GRP5	1109
OPS	1240
AT3G29075	2248
AT4G10330	2769
AT4G32920	3082
AT1G66820	3141
AT2G05530	6240
AT2G15780	6424
AT4G38710	6741
AT4G30460	7434
GRP18	8193
AT4G30450	8349
GIF1	10082
ATGRP9	10112
AT2G05510	10560

TRANSPORT_NUCLEOTIDES

TRANSPORT_NUCLEOTIDES
	255
set	TRANSPORT_NUCLEOTIDES
setSize	19
pANOVA	0.0222
s.dist	-0.303
p.adjustANOVA	0.0959

Top enriched genes

Top 20 genes
GeneID	Gene Rank
PUP14	-10040
PUP7	-9956
PUP18	-9869
PUP23	-9333
PUP1	-8960
PUP17	-6293
AT3G23870	-5568
AT1G34470	-4076
PUP8	-1677
PUP4	-1353
ATPUP5	-916
PUP13	-846
ATPUP12	-518
ATUPS3	-33
PUP11	705
PUP2	1870
PUP10	1911
PUP21	2559
NCS1	6204

Click HERE to show all gene set members

All member genes
GeneID	Gene Rank
PUP14	-10040
PUP7	-9956
PUP18	-9869
PUP23	-9333
PUP1	-8960
PUP17	-6293
AT3G23870	-5568
AT1G34470	-4076
PUP8	-1677
PUP4	-1353
ATPUP5	-916
PUP13	-846
ATPUP12	-518
ATUPS3	-33
PUP11	705
PUP2	1870
PUP10	1911
PUP21	2559
NCS1	6204

SIGNALLING_PHOSPHINOSITIDES_PHOSPHATIDYLINOSITOL-4-PHOSPHATE_5-KINASE

SIGNALLING_PHOSPHINOSITIDES_PHOSPHATIDYLINOSITOL-4-PHOSPHATE_5-KINASE
	215
set	SIGNALLING_PHOSPHINOSITIDES_PHOSPHATIDYLINOSITOL-4-PHOSPHATE_5-KINASE
setSize	18
pANOVA	0.0264
s.dist	-0.302
p.adjustANOVA	0.105

Top enriched genes

Top 20 genes
GeneID	Gene Rank
AT1G60890	-9817
FAB1D	-9481
AT4G17080	-9170
PIP5K3	-8163
FAB1B	-7356
AT1G77660	-6667
PIP5K7	-5368
PIP5K4	-4696
FAB1A	-3057
PIP5K5	-2567
FAB1C	-2453
ATPIPK10	-2133
AT2G35170	-2028
AT1G21920	1048
PIP5K2	1715
PIP5K1	4428
PIP5K9	5939
PIP5K6	6725

Click HERE to show all gene set members

All member genes
GeneID	Gene Rank
AT1G60890	-9817
FAB1D	-9481
AT4G17080	-9170
PIP5K3	-8163
FAB1B	-7356
AT1G77660	-6667
PIP5K7	-5368
PIP5K4	-4696
FAB1A	-3057
PIP5K5	-2567
FAB1C	-2453
ATPIPK10	-2133
AT2G35170	-2028
AT1G21920	1048
PIP5K2	1715
PIP5K1	4428
PIP5K9	5939
PIP5K6	6725

NUCLEOTIDE_METABOLISM_PHOSPHOTRANSFER_AND_PYROPHOSPHATASES_MISC

NUCLEOTIDE_METABOLISM_PHOSPHOTRANSFER_AND_PYROPHOSPHATASES_MISC
	94
set	NUCLEOTIDE_METABOLISM_PHOSPHOTRANSFER_AND_PYROPHOSPHATASES_MISC
setSize	11
pANOVA	0.0834
s.dist	0.301
p.adjustANOVA	0.217

Top enriched genes

Top 20 genes
GeneID	Gene Rank
AT4G29690	10271
PPA6	10235
AT4G29700	9506
PPA4	9119
PPA5	7699
PPA1	4152
PPA2	2285
AT4G29680	22
NAGK	-3934
IPK	-5391
PPA3	-7388

Click HERE to show all gene set members

All member genes
GeneID	Gene Rank
AT4G29690	10271
PPA6	10235
AT4G29700	9506
PPA4	9119
PPA5	7699
PPA1	4152
PPA2	2285
AT4G29680	22
NAGK	-3934
IPK	-5391
PPA3	-7388

PROTEIN_POSTRANSLATIONAL_MODIFICATION_KINASE_RECEPTOR_LIKE_CYTOPLASMATIC_KINASE_VIII

PROTEIN_POSTRANSLATIONAL_MODIFICATION_KINASE_RECEPTOR_LIKE_CYTOPLASMATIC_KINASE_VIII
	122
set	PROTEIN_POSTRANSLATIONAL_MODIFICATION_KINASE_RECEPTOR_LIKE_CYTOPLASMATIC_KINASE_VIII
setSize	11
pANOVA	0.0856
s.dist	-0.299
p.adjustANOVA	0.221

Top enriched genes

Top 20 genes
GeneID	Gene Rank
AT1G48210	-9381
AT1G48220	-9194
AT2G30730	-8236
AT3G59350	-7270
AT2G43230	-7126
PTI11	-6395
AT3G17410	-3722
PTI12	299
AT2G41970	4831
AT3G62220	5645
AT2G47060	8421

Click HERE to show all gene set members

All member genes
GeneID	Gene Rank
AT1G48210	-9381
AT1G48220	-9194
AT2G30730	-8236
AT3G59350	-7270
AT2G43230	-7126
PTI11	-6395
AT3G17410	-3722
PTI12	299
AT2G41970	4831
AT3G62220	5645
AT2G47060	8421

PROTEIN_DEGRADATION_ASPARTATE_PROTEASE

PROTEIN_DEGRADATION_ASPARTATE_PROTEASE
	100
set	PROTEIN_DEGRADATION_ASPARTATE_PROTEASE
setSize	31
pANOVA	0.00461
s.dist	-0.294
p.adjustANOVA	0.0299

Top enriched genes

Top 20 genes
GeneID	Gene Rank
AT1G66180	-9968
AT4G16563	-9949
ASPG2	-9935
AT1G79720	-9153
AT3G51350	-8792
NANA	-8464
AT5G04710	-8213
AT3G51360	-7487
AT2G39710	-7099
APA3	-6049
AT3G02740	-5602
APA1	-5323
AT1G03220	-4808
AT1G77480	-4683
AT3G51330	-3572
APCB1	-3528
APF1	-3151
AT2G03200	-2226
AT2G36670	-1745
APF2	-1573

Click HERE to show all gene set members

All member genes
GeneID	Gene Rank
AT1G66180	-9968
AT4G16563	-9949
ASPG2	-9935
AT1G79720	-9153
AT3G51350	-8792
NANA	-8464
AT5G04710	-8213
AT3G51360	-7487
AT2G39710	-7099
APA3	-6049
AT3G02740	-5602
APA1	-5323
AT1G03220	-4808
AT1G77480	-4683
AT3G51330	-3572
APCB1	-3528
APF1	-3151
AT2G03200	-2226
AT2G36670	-1745
APF2	-1573
AT1G05840	-1031
AT3G51340	-225
AT2G28040	727
SPPL3	954
AT5G10080	1807
AT5G36260	2692
AT5G60160	3404
AT1G03230	3535
APA2	5443
AT1G25510	7076
AT4G35880	8194

Here is the session info with all the versions of packages used.

sessionInfo()

## R version 4.0.3 (2020-10-10)
## Platform: x86_64-pc-linux-gnu (64-bit)
## Running under: Ubuntu 18.04.5 LTS
## 
## Matrix products: default
## BLAS:   /usr/lib/x86_64-linux-gnu/blas/libblas.so.3.7.1
## LAPACK: /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3.7.1
## 
## locale:
##  [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C              
##  [3] LC_TIME=en_US.UTF-8        LC_COLLATE=en_US.UTF-8    
##  [5] LC_MONETARY=en_US.UTF-8    LC_MESSAGES=en_US.UTF-8   
##  [7] LC_PAPER=en_US.UTF-8       LC_NAME=C                 
##  [9] LC_ADDRESS=C               LC_TELEPHONE=C            
## [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C       
## 
## attached base packages:
## [1] parallel  stats4    stats     graphics  grDevices utils     datasets 
## [8] methods   base     
## 
## other attached packages:
##  [1] pkgload_1.1.0               GGally_2.0.0               
##  [3] ggplot2_3.3.2               reshape2_1.4.4             
##  [5] beeswarm_0.2.3              gtools_3.8.2               
##  [7] tibble_3.0.4                dplyr_1.0.2                
##  [9] echarts4r_0.3.3             mitch_1.2.0                
## [11] DESeq2_1.30.0               SummarizedExperiment_1.20.0
## [13] Biobase_2.50.0              MatrixGenerics_1.2.0       
## [15] matrixStats_0.57.0          GenomicRanges_1.42.0       
## [17] GenomeInfoDb_1.26.0         IRanges_2.24.0             
## [19] S4Vectors_0.28.0            BiocGenerics_0.36.0        
## [21] gplots_3.1.0                getDEE2_1.0.0              
## 
## loaded via a namespace (and not attached):
##  [1] bitops_1.0-6           bit64_4.0.5            RColorBrewer_1.1-2    
##  [4] httr_1.4.2             rprojroot_1.3-2        backports_1.2.0       
##  [7] tools_4.0.3            R6_2.5.0               KernSmooth_2.23-18    
## [10] DBI_1.1.0              colorspace_1.4-1       withr_2.3.0           
## [13] htm2txt_2.1.1          tidyselect_1.1.0       gridExtra_2.3         
## [16] bit_4.0.4              compiler_4.0.3         desc_1.2.0            
## [19] DelayedArray_0.16.0    caTools_1.18.0         scales_1.1.1          
## [22] genefilter_1.72.0      stringr_1.4.0          digest_0.6.27         
## [25] rmarkdown_2.5          XVector_0.30.0         pkgconfig_2.0.3       
## [28] htmltools_0.5.0        highr_0.8              fastmap_1.0.1         
## [31] htmlwidgets_1.5.2      rlang_0.4.8            RSQLite_2.2.1         
## [34] shiny_1.5.0            generics_0.1.0         jsonlite_1.7.1        
## [37] BiocParallel_1.24.0    RCurl_1.98-1.2         magrittr_1.5          
## [40] GenomeInfoDbData_1.2.4 Matrix_1.2-18          Rcpp_1.0.5            
## [43] munsell_0.5.0          lifecycle_0.2.0        stringi_1.5.3         
## [46] yaml_2.2.1             MASS_7.3-53            zlibbioc_1.36.0       
## [49] plyr_1.8.6             grid_4.0.3             blob_1.2.1            
## [52] promises_1.1.1         crayon_1.3.4           lattice_0.20-41       
## [55] splines_4.0.3          annotate_1.68.0        locfit_1.5-9.4        
## [58] knitr_1.30             pillar_1.4.6           tcltk_4.0.3           
## [61] geneplotter_1.68.0     XML_3.99-0.5           glue_1.4.2            
## [64] evaluate_0.14          vctrs_0.3.4            httpuv_1.5.4          
## [67] testthat_3.0.0         gtable_0.3.0           purrr_0.3.4           
## [70] assertthat_0.2.1       reshape_0.8.8          xfun_0.19             
## [73] mime_0.9               xtable_1.8-4           later_1.1.0.1         
## [76] survival_3.2-7         pbmcapply_1.5.0        AnnotationDbi_1.52.0  
## [79] memoise_1.1.0          ellipsis_0.3.1

END of report

Mitch Report

Antony Kaspi & Mark Ziemann

Background

Input profiles

Input genesets

Differential pathway expression

Interactive enrichment scatterplot

Results table

Results (complete table)

Detailed Gene set reports