Mitch Report

date generated: 2020-11-05

Background

Mitch performs unidimensional and multidimensional gene set enrichment analysis. The concept behind this dates to work by Cox and Mann (https://doi.org/10.1186/1471-2105-13-S16-S12). This implementation is suited to R based workflows of multi-omics datasets. This software was developed by Antony Kaspi and Mark Ziemann. Learn more about Mitch at the website: https://github.com/markziemann/Mitch

Input profiles

Here is the first few lines of the input profile.

##                       x
## 1MMP        -0.17457270
## 2-Cys       -0.12789230
## 2A6         -2.99213240
## 2MMP         0.33423930
## 3AT1        -0.08714128
## 3BETAHSD/D1  0.19545883

Here are some metrics about the input data profile:

Profile metrics
	Profile metrics
num_genesets	959
num_genes_in_profile	20575
duplicated_genes_present	0
num_profile_genes_in_sets	19992
num_profile_genes_not_in_sets	583

Here is a plot of the input profiles. Note the dynamic ranges.

Here is the contour plot of the profile including all detected genes.

Input genesets

Here are some metrics about the gene sets used: GMT file of genesets: ../ref/Ath_AGI_LOCUS_TAIR10_Aug2012.txt.gmt

Gene sets metrics
	Gene sets metrics
num_genesets	959
num_genesets_excluded	696
num_genesets_included	263

Differential pathway expression

Interactive enrichment scatterplot

Significance is calculated by -log10(p-value). All points shown are FDR<0.05.

Significance is calculated by -log10(p-value). Top N sets shown irrespective of FDR.

Results table

Top N= 50 gene sets

set	setSize	pANOVA	s.dist	p.adjustANOVA
RNA REGULATION OF TRANSCRIPTION CCAAT BOX BINDING FACTOR FAMILY, HAP2	10	1.38e-04	-0.696	2.02e-03
REDOX THIOREDOXIN PDIL	13	7.37e-05	0.635	1.29e-03
TRANSPORT MAJOR INTRINSIC PROTEINS PIP	13	1.76e-04	0.601	2.20e-03
RNA REGULATION OF TRANSCRIPTION G2-LIKE TRANSCRIPTION FACTOR FAMILY, GARP	37	2.79e-10	-0.599	2.45e-08
CELL WALL CELLULOSE SYNTHESIS	14	1.50e-04	0.585	2.07e-03
CELL WALL CELL WALL PROTEINS HRGP	14	1.62e-04	-0.582	2.13e-03
HORMONE METABOLISM JASMONATE INDUCED-REGULATED-RESPONSIVE-ACTIVATED	13	3.26e-04	0.576	3.90e-03
RNA REGULATION OF TRANSCRIPTION NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP	13	4.89e-04	-0.558	5.36e-03
NOT ASSIGNED NO ONTOLOGY PROLINE RICH FAMILY	37	1.41e-08	-0.539	9.27e-07
DEVELOPMENT LATE EMBRYOGENESIS ABUNDANT	18	9.63e-05	0.531	1.58e-03
SECONDARY METABOLISM ISOPRENOIDS NON-MEVALONATE PATHWAY GERANYLGERANYL PYROPHOSPHATE SYNTHASE	10	9.73e-03	0.472	5.22e-02
RNA REGULATION OF TRANSCRIPTION MADS BOX TRANSCRIPTION FACTOR FAMILY	27	2.42e-05	-0.469	5.80e-04
SIGNALLING RECEPTOR KINASES LEUCINE RICH REPEAT X	12	5.17e-03	0.466	3.16e-02
CELL WALL CELLULOSE SYNTHESIS CELLULOSE SYNTHASE	25	5.82e-05	0.464	1.18e-03
CELL WALL CELL WALL PROTEINS LRR	16	1.60e-03	-0.456	1.24e-02
PROTEIN SYNTHESIS ELONGATION	29	2.43e-05	0.453	5.80e-04
LIPID METABOLISM PHOSPHOLIPID SYNTHESIS	16	1.78e-03	0.451	1.34e-02
RNA REGULATION OF TRANSCRIPTION SNF7	12	7.83e-03	-0.443	4.48e-02
TRANSPORT CALCIUM	21	1.07e-03	0.413	9.66e-03
PS LIGHTREACTION PHOTOSYSTEM II LHC-II	14	1.29e-02	0.384	6.54e-02
HORMONE METABOLISM ABSCISIC ACID SYNTHESIS-DEGRADATION	10	4.05e-02	-0.374	1.44e-01
PS LIGHTREACTION CYCLIC ELECTRON FLOW-CHLORORESPIRATION	12	2.49e-02	0.374	1.06e-01
NOT ASSIGNED NO ONTOLOGY GLYCINE RICH PROTEINS	52	6.86e-06	-0.361	2.01e-04
RNA REGULATION OF TRANSCRIPTION WRKY DOMAIN TRANSCRIPTION FACTOR FAMILY	61	3.14e-06	-0.345	1.38e-04
METAL HANDLING	10	6.14e-02	-0.342	1.86e-01
HORMONE METABOLISM AUXIN SYNTHESIS-DEGRADATION	13	3.50e-02	0.338	1.36e-01
NOT ASSIGNED NO ONTOLOGY ABC1 FAMILY PROTEIN	11	5.30e-02	0.337	1.74e-01
RNA REGULATION OF TRANSCRIPTION GEBP LIKE	10	6.59e-02	0.336	1.95e-01
RNA REGULATION OF TRANSCRIPTION AUX/IAA FAMILY	23	5.90e-03	0.332	3.53e-02
RNA REGULATION OF TRANSCRIPTION ARF, AUXIN RESPONSE FACTOR FAMILY	16	2.23e-02	-0.330	9.94e-02
SIGNALLING RECEPTOR KINASES LEUCINE RICH REPEAT II	13	3.97e-02	0.329	1.44e-01
MITOCHONDRIAL ELECTRON TRANSPORT / ATP SYNTHESIS CYTOCHROME C REDUCTASE	10	7.88e-02	-0.321	2.07e-01
MITOCHONDRIAL ELECTRON TRANSPORT / ATP SYNTHESIS CYTOCHROME C	10	7.97e-02	0.320	2.07e-01
DEVELOPMENT STORAGE PROTEINS	18	1.93e-02	0.318	8.92e-02
RNA REGULATION OF TRANSCRIPTION ZF-HD	14	4.11e-02	-0.315	1.44e-01
PROTEIN DEGRADATION UBIQUITIN E2	38	1.13e-03	-0.305	9.94e-03
NOT ASSIGNED NO ONTOLOGY ARMADILLO/BETA-CATENIN REPEAT FAMILY PROTEIN	31	3.30e-03	0.305	2.28e-02
SIGNALLING RECEPTOR KINASES WHEAT LRK10 LIKE	12	6.90e-02	-0.303	1.97e-01
RNA REGULATION OF TRANSCRIPTION TRIHELIX, TRIPLE-HELIX TRANSCRIPTION FACTOR FAMILY	30	4.67e-03	-0.298	3.07e-02
PROTEIN SYNTHESIS RIBOSOME BIOGENESIS	11	8.67e-02	0.298	2.19e-01
SIGNALLING RECEPTOR KINASES WALL ASSOCIATED KINASE	22	1.57e-02	-0.298	7.61e-02
TRANSPORT NUCLEOTIDES	18	3.00e-02	-0.296	1.21e-01
LIPID METABOLISM LIPID DEGRADATION LIPASES TRIACYLGLYCEROL LIPASE	26	9.10e-03	0.295	5.01e-02
NOT ASSIGNED NO ONTOLOGY PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN	424	5.22e-25	0.292	6.87e-23
RNA REGULATION OF TRANSCRIPTION C2H2 ZINC FINGER FAMILY	100	6.49e-07	-0.288	3.41e-05
RNA REGULATION OF TRANSCRIPTION TCP TRANSCRIPTION FACTOR FAMILY	16	4.71e-02	-0.287	1.61e-01
NOT ASSIGNED NO ONTOLOGY AGENET DOMAIN-CONTAINING PROTEIN	16	4.78e-02	-0.286	1.61e-01
MISC GLUCO-, GALACTO- AND MANNOSIDASES BETA-GALACTOSIDASE	13	7.72e-02	-0.283	2.07e-01
REDOX ASCORBATE AND GLUTATHIONE ASCORBATE	16	5.57e-02	0.276	1.77e-01
RNA REGULATION OF TRANSCRIPTION C2C2(ZN) DOF ZINC FINGER FAMILY	31	9.14e-03	-0.271	5.01e-02

Results (complete table)

Click HERE to show results for all gene sets

Complete results
set	setSize	pANOVA	s.dist	p.adjustANOVA
RNA REGULATION OF TRANSCRIPTION CCAAT BOX BINDING FACTOR FAMILY, HAP2	10	1.38e-04	-0.696000	2.02e-03
REDOX THIOREDOXIN PDIL	13	7.37e-05	0.635000	1.29e-03
TRANSPORT MAJOR INTRINSIC PROTEINS PIP	13	1.76e-04	0.601000	2.20e-03
RNA REGULATION OF TRANSCRIPTION G2-LIKE TRANSCRIPTION FACTOR FAMILY, GARP	37	2.79e-10	-0.599000	2.45e-08
CELL WALL CELLULOSE SYNTHESIS	14	1.50e-04	0.585000	2.07e-03
CELL WALL CELL WALL PROTEINS HRGP	14	1.62e-04	-0.582000	2.13e-03
HORMONE METABOLISM JASMONATE INDUCED-REGULATED-RESPONSIVE-ACTIVATED	13	3.26e-04	0.576000	3.90e-03
RNA REGULATION OF TRANSCRIPTION NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP	13	4.89e-04	-0.558000	5.36e-03
NOT ASSIGNED NO ONTOLOGY PROLINE RICH FAMILY	37	1.41e-08	-0.539000	9.27e-07
DEVELOPMENT LATE EMBRYOGENESIS ABUNDANT	18	9.63e-05	0.531000	1.58e-03
SECONDARY METABOLISM ISOPRENOIDS NON-MEVALONATE PATHWAY GERANYLGERANYL PYROPHOSPHATE SYNTHASE	10	9.73e-03	0.472000	5.22e-02
RNA REGULATION OF TRANSCRIPTION MADS BOX TRANSCRIPTION FACTOR FAMILY	27	2.42e-05	-0.469000	5.80e-04
SIGNALLING RECEPTOR KINASES LEUCINE RICH REPEAT X	12	5.17e-03	0.466000	3.16e-02
CELL WALL CELLULOSE SYNTHESIS CELLULOSE SYNTHASE	25	5.82e-05	0.464000	1.18e-03
CELL WALL CELL WALL PROTEINS LRR	16	1.60e-03	-0.456000	1.24e-02
PROTEIN SYNTHESIS ELONGATION	29	2.43e-05	0.453000	5.80e-04
LIPID METABOLISM PHOSPHOLIPID SYNTHESIS	16	1.78e-03	0.451000	1.34e-02
RNA REGULATION OF TRANSCRIPTION SNF7	12	7.83e-03	-0.443000	4.48e-02
TRANSPORT CALCIUM	21	1.07e-03	0.413000	9.66e-03
PS LIGHTREACTION PHOTOSYSTEM II LHC-II	14	1.29e-02	0.384000	6.54e-02
HORMONE METABOLISM ABSCISIC ACID SYNTHESIS-DEGRADATION	10	4.05e-02	-0.374000	1.44e-01
PS LIGHTREACTION CYCLIC ELECTRON FLOW-CHLORORESPIRATION	12	2.49e-02	0.374000	1.06e-01
NOT ASSIGNED NO ONTOLOGY GLYCINE RICH PROTEINS	52	6.86e-06	-0.361000	2.01e-04
RNA REGULATION OF TRANSCRIPTION WRKY DOMAIN TRANSCRIPTION FACTOR FAMILY	61	3.14e-06	-0.345000	1.38e-04
METAL HANDLING	10	6.14e-02	-0.342000	1.86e-01
HORMONE METABOLISM AUXIN SYNTHESIS-DEGRADATION	13	3.50e-02	0.338000	1.36e-01
NOT ASSIGNED NO ONTOLOGY ABC1 FAMILY PROTEIN	11	5.30e-02	0.337000	1.74e-01
RNA REGULATION OF TRANSCRIPTION GEBP LIKE	10	6.59e-02	0.336000	1.95e-01
RNA REGULATION OF TRANSCRIPTION AUX/IAA FAMILY	23	5.90e-03	0.332000	3.53e-02
RNA REGULATION OF TRANSCRIPTION ARF, AUXIN RESPONSE FACTOR FAMILY	16	2.23e-02	-0.330000	9.94e-02
SIGNALLING RECEPTOR KINASES LEUCINE RICH REPEAT II	13	3.97e-02	0.329000	1.44e-01
MITOCHONDRIAL ELECTRON TRANSPORT / ATP SYNTHESIS CYTOCHROME C REDUCTASE	10	7.88e-02	-0.321000	2.07e-01
MITOCHONDRIAL ELECTRON TRANSPORT / ATP SYNTHESIS CYTOCHROME C	10	7.97e-02	0.320000	2.07e-01
DEVELOPMENT STORAGE PROTEINS	18	1.93e-02	0.318000	8.92e-02
RNA REGULATION OF TRANSCRIPTION ZF-HD	14	4.11e-02	-0.315000	1.44e-01
PROTEIN DEGRADATION UBIQUITIN E2	38	1.13e-03	-0.305000	9.94e-03
NOT ASSIGNED NO ONTOLOGY ARMADILLO/BETA-CATENIN REPEAT FAMILY PROTEIN	31	3.30e-03	0.305000	2.28e-02
SIGNALLING RECEPTOR KINASES WHEAT LRK10 LIKE	12	6.90e-02	-0.303000	1.97e-01
RNA REGULATION OF TRANSCRIPTION TRIHELIX, TRIPLE-HELIX TRANSCRIPTION FACTOR FAMILY	30	4.67e-03	-0.298000	3.07e-02
PROTEIN SYNTHESIS RIBOSOME BIOGENESIS	11	8.67e-02	0.298000	2.19e-01
SIGNALLING RECEPTOR KINASES WALL ASSOCIATED KINASE	22	1.57e-02	-0.298000	7.61e-02
TRANSPORT NUCLEOTIDES	18	3.00e-02	-0.296000	1.21e-01
LIPID METABOLISM LIPID DEGRADATION LIPASES TRIACYLGLYCEROL LIPASE	26	9.10e-03	0.295000	5.01e-02
NOT ASSIGNED NO ONTOLOGY PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN	424	5.22e-25	0.292000	6.87e-23
RNA REGULATION OF TRANSCRIPTION C2H2 ZINC FINGER FAMILY	100	6.49e-07	-0.288000	3.41e-05
RNA REGULATION OF TRANSCRIPTION TCP TRANSCRIPTION FACTOR FAMILY	16	4.71e-02	-0.287000	1.61e-01
NOT ASSIGNED NO ONTOLOGY AGENET DOMAIN-CONTAINING PROTEIN	16	4.78e-02	-0.286000	1.61e-01
MISC GLUCO-, GALACTO- AND MANNOSIDASES BETA-GALACTOSIDASE	13	7.72e-02	-0.283000	2.07e-01
REDOX ASCORBATE AND GLUTATHIONE ASCORBATE	16	5.57e-02	0.276000	1.77e-01
RNA REGULATION OF TRANSCRIPTION C2C2(ZN) DOF ZINC FINGER FAMILY	31	9.14e-03	-0.271000	5.01e-02
RNA REGULATION OF TRANSCRIPTION PHOR1	11	1.21e-01	0.270000	2.75e-01
PROTEIN ASSEMBLY AND COFACTOR LIGATION	23	2.53e-02	0.269000	1.06e-01
MISC PROTEASE INHIBITOR/SEED STORAGE/LIPID TRANSFER PROTEIN (LTP) FAMILY PROTEIN	61	3.84e-04	-0.263000	4.39e-03
SECONDARY METABOLISM SIMPLE PHENOLS	16	7.01e-02	-0.261000	1.98e-01
NOT ASSIGNED NO ONTOLOGY HYDROXYPROLINE RICH PROTEINS	52	1.22e-03	-0.259000	1.01e-02
TRANSPORT ABC TRANSPORTERS AND MULTIDRUG RESISTANCE SYSTEMS	110	4.64e-06	0.253000	1.53e-04
MISC BETA 1,3 GLUCAN HYDROLASES	19	5.78e-02	-0.251000	1.77e-01
TRANSPORT SUGARS	59	8.82e-04	0.250000	8.60e-03
MINOR CHO METABOLISM CALLOSE	13	1.19e-01	0.249000	2.74e-01
PROTEIN DEGRADATION UBIQUITIN PROTEASOM	59	1.22e-03	0.243000	1.01e-02
NOT ASSIGNED NO ONTOLOGY FORMIN HOMOLOGY 2 DOMAIN-CONTAINING PROTEIN	17	8.29e-02	-0.243000	2.14e-01
SIGNALLING RECEPTOR KINASES PROLINE EXTENSIN LIKE	15	1.04e-01	-0.243000	2.46e-01
TRANSPORT METABOLITE TRANSPORTERS AT THE ENVELOPE MEMBRANE	26	3.39e-02	0.240000	1.33e-01
SECONDARY METABOLISM FLAVONOIDS DIHYDROFLAVONOLS	16	9.80e-02	0.239000	2.36e-01
DEVELOPMENT SQUAMOSA PROMOTER BINDING LIKE (SPL)	17	9.06e-02	-0.237000	2.25e-01
TRANSPORT UNSPECIFIED CATIONS	38	1.18e-02	0.236000	6.09e-02
SECONDARY METABOLISM N MISC ALKALOID-LIKE	20	6.90e-02	0.235000	1.97e-01
RNA REGULATION OF TRANSCRIPTION SET-DOMAIN TRANSCRIPTIONAL REGULATOR FAMILY	34	1.81e-02	0.234000	8.51e-02
PROTEIN POSTRANSLATIONAL MODIFICATION KINASE	22	5.73e-02	-0.234000	1.77e-01
STRESS BIOTIC SIGNALLING	12	1.69e-01	-0.229000	3.54e-01
SECONDARY METABOLISM PHENYLPROPANOIDS	37	1.59e-02	0.229000	7.61e-02
RNA REGULATION OF TRANSCRIPTION HB,HOMEOBOX TRANSCRIPTION FACTOR FAMILY	66	1.34e-03	-0.228000	1.07e-02
PROTEIN DEGRADATION UBIQUITIN UBIQUITIN PROTEASE	20	7.84e-02	0.227000	2.07e-01
PROTEIN SYNTHESIS RIBOSOME BIOGENESIS PRE-RRNA PROCESSING AND MODIFICATIONS SNORNPS	13	1.59e-01	0.225000	3.41e-01
PROTEIN TARGETING PEROXISOMES	11	1.99e-01	-0.224000	3.88e-01
RNA REGULATION OF TRANSCRIPTION BZIP TRANSCRIPTION FACTOR FAMILY	60	2.85e-03	-0.223000	2.03e-02
PS LIGHTREACTION PHOTOSYSTEM I PSI POLYPEPTIDE SUBUNITS	18	1.02e-01	-0.222000	2.45e-01
MITOCHONDRIAL ELECTRON TRANSPORT / ATP SYNTHESIS NADH-DH LOCALISATION NOT CLEAR	33	2.72e-02	0.222000	1.12e-01
PROTEIN DEGRADATION METALLOPROTEASE	38	2.09e-02	0.216000	9.50e-02
REDOX ASCORBATE AND GLUTATHIONE	23	7.50e-02	-0.214000	2.05e-01
HORMONE METABOLISM ETHYLENE INDUCED-REGULATED-RESPONSIVE-ACTIVATED	24	7.21e-02	-0.212000	2.00e-01
RNA REGULATION OF TRANSCRIPTION MYB DOMAIN TRANSCRIPTION FACTOR FAMILY	121	6.59e-05	-0.210000	1.24e-03
CELL WALL CELL WALL PROTEINS AGPS AGP	39	2.35e-02	-0.210000	1.01e-01
STRESS ABIOTIC UNSPECIFIED	83	9.81e-04	-0.209000	9.21e-03
PROTEIN DEGRADATION AUTOPHAGY	22	8.98e-02	-0.209000	2.25e-01
PROTEIN TARGETING SECRETORY PATHWAY ER	14	1.78e-01	0.208000	3.65e-01
RNA REGULATION OF TRANSCRIPTION C2C2(ZN) GATA TRANSCRIPTION FACTOR FAMILY	27	6.66e-02	-0.204000	1.95e-01
PROTEIN FOLDING	64	5.02e-03	0.203000	3.15e-02
SIGNALLING RECEPTOR KINASES LEGUME-LECTIN	14	1.91e-01	0.202000	3.83e-01
RNA REGULATION OF TRANSCRIPTION BHLH,BASIC HELIX-LOOP-HELIX FAMILY	121	1.27e-04	-0.202000	1.97e-03
PROTEIN SYNTHESIS INITIATION	77	2.28e-03	0.201000	1.66e-02
PROTEIN TARGETING SECRETORY PATHWAY GOLGI	17	1.52e-01	0.201000	3.31e-01
SIGNALLING RECEPTOR KINASES LEUCINE RICH REPEAT XI	27	7.60e-02	0.197000	2.06e-01
LIPID METABOLISM LIPID TRANSFER PROTEINS ETC	13	2.19e-01	-0.197000	4.14e-01
NOT ASSIGNED NO ONTOLOGY DC1 DOMAIN CONTAINING PROTEIN	101	6.33e-04	-0.197000	6.40e-03
PROTEIN POSTRANSLATIONAL MODIFICATION KINASE RECEPTOR LIKE CYTOPLASMATIC KINASE VII	41	3.12e-02	-0.194000	1.24e-01
SIGNALLING PHOSPHINOSITIDES	15	1.98e-01	0.192000	3.88e-01
HORMONE METABOLISM CYTOKININ SYNTHESIS-DEGRADATION	15	2.02e-01	0.190000	3.90e-01
RNA REGULATION OF TRANSCRIPTION	13	2.35e-01	-0.190000	4.35e-01
PROTEIN TARGETING NUCLEUS	42	3.69e-02	0.186000	1.39e-01
RNA REGULATION OF TRANSCRIPTION MYB-RELATED TRANSCRIPTION FACTOR FAMILY	42	4.01e-02	-0.183000	1.44e-01
MISC OXIDASES - COPPER, FLAVONE ETC	85	3.58e-03	0.183000	2.42e-02
RNA RNA BINDING	164	5.49e-05	-0.183000	1.18e-03
MITOCHONDRIAL ELECTRON TRANSPORT / ATP SYNTHESIS F1-ATPASE	20	1.65e-01	0.179000	3.51e-01
RNA REGULATION OF TRANSCRIPTION GENERAL TRANSCRIPTION	30	9.76e-02	-0.175000	2.36e-01
SIGNALLING 14-3-3 PROTEINS	11	3.20e-01	0.173000	5.62e-01
TRANSPORT METAL	67	1.51e-02	0.172000	7.50e-02
PROTEIN DEGRADATION UBIQUITIN E3 SCF FBOX	248	4.35e-06	0.169000	1.53e-04
CELL CYCLE	85	7.31e-03	-0.168000	4.27e-02
NUCLEOTIDE METABOLISM SALVAGE NUDIX HYDROLASES	24	1.55e-01	0.168000	3.35e-01
TRANSPORT CYCLIC NUCLEOTIDE OR CALCIUM REGULATED CHANNELS	16	2.49e-01	0.167000	4.58e-01
MISC GLUTATHIONE S TRANSFERASES	52	4.11e-02	0.164000	1.44e-01
PROTEIN SYNTHESIS RIBOSOME BIOGENESIS PRE-RRNA PROCESSING AND MODIFICATIONS DEXD-BOX HELICASES	14	2.89e-01	0.164000	5.21e-01
REDOX DISMUTASES AND CATALASES	11	3.55e-01	-0.161000	5.87e-01
CELL WALL MODIFICATION	55	4.26e-02	0.158000	1.47e-01
TRANSPORT UNSPECIFIED ANIONS	15	2.94e-01	0.157000	5.25e-01
DNA SYNTHESIS/CHROMATIN STRUCTURE HISTONE CORE H2A	13	3.30e-01	0.156000	5.74e-01
RNA REGULATION OF TRANSCRIPTION B3 TRANSCRIPTION FACTOR FAMILY	24	1.94e-01	-0.153000	3.87e-01
RNA REGULATION OF TRANSCRIPTION JUMONJI FAMILY	13	3.40e-01	0.153000	5.76e-01
TRANSPORT P- AND V-ATPASES	28	1.70e-01	0.150000	3.54e-01
SIGNALLING RECEPTOR KINASES DUF 26	39	1.08e-01	-0.149000	2.50e-01
STRESS ABIOTIC TOUCH/WOUNDING	13	3.53e-01	-0.149000	5.87e-01
MISC BETA 1,3 GLUCAN HYDROLASES GLUCAN ENDO-1,3-BETA-GLUCOSIDASE	23	2.25e-01	-0.146000	4.19e-01
LIPID METABOLISM FA SYNTHESIS AND FA ELONGATION ACYL COA LIGASE	19	2.72e-01	0.146000	4.97e-01
MISC ACID AND OTHER PHOSPHATASES	58	5.73e-02	0.144000	1.77e-01
HORMONE METABOLISM ABSCISIC ACID SIGNAL TRANSDUCTION	10	4.33e-01	-0.143000	6.55e-01
AMINO ACID METABOLISM DEGRADATION AROMATIC AA TRYPTOPHAN	12	3.91e-01	-0.143000	6.24e-01
NOT ASSIGNED NO ONTOLOGY C2 DOMAIN-CONTAINING PROTEIN	38	1.28e-01	0.143000	2.85e-01
TRANSPORT PEPTIDES AND OLIGOPEPTIDES	53	7.24e-02	0.143000	2.00e-01
MISC MISC2	28	1.96e-01	0.141000	3.88e-01
STRESS ABIOTIC DROUGHT/SALT	66	4.85e-02	0.140000	1.61e-01
RNA REGULATION OF TRANSCRIPTION NAC DOMAIN TRANSCRIPTION FACTOR FAMILY	16	3.32e-01	-0.140000	5.74e-01
CELL WALL HEMICELLULOSE SYNTHESIS	11	4.22e-01	0.140000	6.46e-01
SECONDARY METABOLISM WAX	16	3.36e-01	0.139000	5.76e-01
LIPID METABOLISM LIPID DEGRADATION LYSOPHOSPHOLIPASES PHOSPHOLIPASE D	12	4.17e-01	0.135000	6.46e-01
RNA REGULATION OF TRANSCRIPTION HDA	16	3.57e-01	0.133000	5.87e-01
PROTEIN TARGETING SECRETORY PATHWAY VACUOLE	29	2.21e-01	0.131000	4.15e-01
MISC UDP GLUCOSYL AND GLUCORONYL TRANSFERASES	157	4.81e-03	0.130000	3.08e-02
TRANSPORT PHOSPHATE	21	3.03e-01	0.130000	5.39e-01
SIGNALLING RECEPTOR KINASES MISC	73	5.73e-02	-0.129000	1.77e-01
MINOR CHO METABOLISM OTHERS	39	1.72e-01	0.126000	3.57e-01
STRESS ABIOTIC COLD	15	4.03e-01	-0.125000	6.38e-01
SIGNALLING RECEPTOR KINASES LEUCINE RICH REPEAT I	19	3.51e-01	-0.124000	5.87e-01
RNA REGULATION OF TRANSCRIPTION UNCLASSIFIED	267	5.23e-04	-0.123000	5.50e-03
PROTEIN DEGRADATION AAA TYPE	34	2.15e-01	0.123000	4.10e-01
SIGNALLING RECEPTOR KINASES LEUCINE RICH REPEAT VII	10	5.02e-01	0.123000	7.21e-01
RNA PROCESSING RIBONUCLEASES	47	1.48e-01	-0.122000	3.24e-01
SIGNALLING RECEPTOR KINASES LEUCINE RICH REPEAT VI	10	5.09e-01	-0.121000	7.22e-01
NOT ASSIGNED UNKNOWN	4443	4.57e-35	-0.121000	1.20e-32
MISC GDSL-MOTIF LIPASE	59	1.20e-01	-0.117000	2.74e-01
RNA REGULATION OF TRANSCRIPTION AS2,LATERAL ORGAN BOUNDARIES GENE FAMILY	21	3.65e-01	-0.114000	5.96e-01
HORMONE METABOLISM GIBBERELIN INDUCED-REGULATED-RESPONSIVE-ACTIVATED	11	5.14e-01	0.114000	7.22e-01
MISC GLUCO-, GALACTO- AND MANNOSIDASES	42	2.05e-01	0.113000	3.93e-01
SIGNALLING LIGHT COP9 SIGNALOSOME	12	5.02e-01	-0.112000	7.21e-01
NUCLEOTIDE METABOLISM PHOSPHOTRANSFER AND PYROPHOSPHATASES MISC	11	5.26e-01	0.110000	7.28e-01
MISC PLASTOCYANIN-LIKE	24	3.52e-01	-0.110000	5.87e-01
MISC INVERTASE/PECTIN METHYLESTERASE INHIBITOR FAMILY PROTEIN	23	3.68e-01	0.108000	5.97e-01
PROTEIN POSTRANSLATIONAL MODIFICATION KINASE RECEPTOR LIKE CYTOPLASMATIC KINASE IX	11	5.36e-01	-0.108000	7.37e-01
STRESS BIOTIC SIGNALLING MLO-LIKE	12	5.19e-01	-0.108000	7.24e-01
PROTEIN POSTRANSLATIONAL MODIFICATION KINASE RECEPTOR LIKE CYTOPLASMATIC KINASE VIII	10	5.65e-01	0.105000	7.44e-01
STRESS BIOTIC RECEPTORS	17	4.58e-01	-0.104000	6.88e-01
RNA REGULATION OF TRANSCRIPTION METHYL BINDING DOMAIN PROTEINS	10	5.73e-01	0.103000	7.44e-01
TRANSPORT AMINO ACIDS	58	1.88e-01	0.100000	3.80e-01
PROTEIN TARGETING MITOCHONDRIA	31	3.38e-01	0.099500	5.76e-01
TRANSPORT MISC	114	6.67e-02	0.099400	1.95e-01
SIGNALLING RECEPTOR KINASES S-LOCUS GLYCOPROTEIN LIKE	23	4.11e-01	-0.099100	6.46e-01
HORMONE METABOLISM ABSCISIC ACID INDUCED-REGULATED-RESPONSIVE-ACTIVATED	22	4.22e-01	-0.098800	6.46e-01
SIGNALLING MISC	16	5.03e-01	0.096600	7.21e-01
MISC O-METHYL TRANSFERASES	19	4.66e-01	0.096500	6.93e-01
RNA REGULATION OF TRANSCRIPTION C3H ZINC FINGER FAMILY	24	4.20e-01	0.095100	6.46e-01
RNA REGULATION OF TRANSCRIPTION PHD FINGER TRANSCRIPTION FACTOR	10	6.06e-01	0.094200	7.71e-01
STRESS BIOTIC PR-PROTEINS	171	3.56e-02	-0.093200	1.36e-01
NOT ASSIGNED NO ONTOLOGY TETRATRICOPEPTIDE REPEAT (TPR)	26	4.13e-01	0.092800	6.46e-01
AMINO ACID METABOLISM SYNTHESIS SERINE-GLYCINE-CYSTEINE GROUP CYSTEINE OASTL	10	6.12e-01	0.092600	7.71e-01
RNA REGULATION OF TRANSCRIPTION AP2/EREBP, APETALA2/ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN FAMILY	90	1.47e-01	0.088400	3.24e-01
PROTEIN DEGRADATION UBIQUITIN E3 BTB/POZ CULLIN3 BTB/POZ	10	6.30e-01	-0.087900	7.86e-01
RNA REGULATION OF TRANSCRIPTION CHROMATIN REMODELING FACTORS	35	3.74e-01	-0.086800	6.04e-01
REDOX ASCORBATE AND GLUTATHIONE GLUTATHIONE	11	6.24e-01	0.085300	7.82e-01
NUCLEOTIDE METABOLISM DEGRADATION	25	4.64e-01	0.084600	6.93e-01
SIGNALLING RECEPTOR KINASES CATHARANTHUS ROSEUS-LIKE RLK1	14	5.88e-01	0.083600	7.55e-01
RNA REGULATION OF TRANSCRIPTION HISTONE ACETYLTRANSFERASES	18	5.49e-01	-0.081600	7.37e-01
STRESS ABIOTIC	21	5.20e-01	0.081100	7.24e-01
PROTEIN SYNTHESIS RELEASE	10	6.58e-01	0.080900	8.05e-01
TRANSPORT METABOLITE TRANSPORTERS AT THE MITOCHONDRIAL MEMBRANE	62	2.82e-01	0.079100	5.11e-01
RNA REGULATION OF TRANSCRIPTION HSF,HEAT-SHOCK TRANSCRIPTION FACTOR FAMILY	18	5.72e-01	-0.077000	7.44e-01
RNA REGULATION OF TRANSCRIPTION PUTATIVE TRANSCRIPTION REGULATOR	142	1.23e-01	-0.075000	2.77e-01
TRANSPORT POTASSIUM	37	4.32e-01	0.074600	6.55e-01
LIPID METABOLISM EXOTICS (STEROIDS, SQUALENE ETC) SPHINGOLIPIDS	20	5.70e-01	0.073400	7.44e-01
HORMONE METABOLISM AUXIN SIGNAL TRANSDUCTION	23	5.61e-01	0.070100	7.44e-01
MISC GCN5-RELATED N-ACETYLTRANSFERASE	25	5.46e-01	0.069800	7.37e-01
PROTEIN DEGRADATION SUBTILASES	35	4.75e-01	0.069700	7.02e-01
PROTEIN DEGRADATION UBIQUITIN E3 RING	367	2.30e-02	-0.069100	1.01e-01
TRANSPORT NITRATE	12	6.82e-01	-0.068300	8.27e-01
SIGNALLING G-PROTEINS	219	9.72e-02	0.065100	2.36e-01
PROTEIN DEGRADATION ASPARTATE PROTEASE	30	5.49e-01	0.063200	7.37e-01
DEVELOPMENT UNSPECIFIED	566	1.09e-02	-0.062600	5.74e-02
CELL VESICLE TRANSPORT	157	1.79e-01	0.062100	3.66e-01
LIPID METABOLISM LIPID DEGRADATION LIPASES	10	7.40e-01	0.060500	8.89e-01
RNA REGULATION OF TRANSCRIPTION ARR	16	6.79e-01	0.059800	8.26e-01
NOT ASSIGNED NO ONTOLOGY EPSIN N-TERMINAL HOMOLOGY (ENTH) DOMAIN-CONTAINING PROTEIN	19	6.53e-01	-0.059500	8.05e-01
RNA PROCESSING RNA HELICASE	33	5.75e-01	0.056500	7.44e-01
METAL HANDLING BINDING, CHELATION AND STORAGE	47	5.04e-01	-0.056300	7.21e-01
MISC SHORT CHAIN DEHYDROGENASE/REDUCTASE (SDR)	48	5.11e-01	0.054900	7.22e-01
MISC GLUCO-, GALACTO- AND MANNOSIDASES ENDOGLUCANASE	13	7.39e-01	-0.053400	8.89e-01
CELL ORGANISATION	346	1.06e-01	-0.050600	2.48e-01
PROTEIN SYNTHESIS RIBOSOMAL PROTEIN EUKARYOTIC 60S SUBUNIT L34	10	7.85e-01	0.049800	9.15e-01
PROTEIN POSTRANSLATIONAL MODIFICATION	503	5.72e-02	0.049600	1.77e-01
CELL WALL DEGRADATION PECTATE LYASES AND POLYGALACTURONASES	66	4.86e-01	0.049600	7.10e-01
HORMONE METABOLISM ETHYLENE SIGNAL TRANSDUCTION	30	6.40e-01	-0.049300	7.94e-01
DNA REPAIR	74	4.86e-01	-0.046900	7.10e-01
PROTEIN DEGRADATION UBIQUITIN	58	5.43e-01	-0.046200	7.37e-01
TRANSPORT SULPHATE	12	7.82e-01	0.046000	9.15e-01
PS LIGHTREACTION PHOTOSYSTEM II PSII POLYPEPTIDE SUBUNITS	43	6.13e-01	0.044600	7.71e-01
MISC MYROSINASES-LECTIN-JACALIN	46	6.10e-01	0.043500	7.71e-01
RNA REGULATION OF TRANSCRIPTION GLOBAL TRANSCRIPTION FACTOR GROUP	13	7.88e-01	-0.043100	9.15e-01
SIGNALLING IN SUGAR AND NUTRIENT PHYSIOLOGY	36	6.57e-01	-0.042800	8.05e-01
PROTEIN TARGETING SECRETORY PATHWAY UNSPECIFIED	72	5.38e-01	-0.041900	7.37e-01
DNA SYNTHESIS/CHROMATIN STRUCTURE	204	3.20e-01	-0.040400	5.62e-01
RNA REGULATION OF TRANSCRIPTION PWWP DOMAIN PROTEIN	11	8.26e-01	-0.038300	9.36e-01
PROTEIN AA ACTIVATION PSEUDOURIDYLATE SYNTHASE	16	7.92e-01	-0.038000	9.15e-01
PROTEIN DEGRADATION UBIQUITIN E3 SCF SKP	16	7.97e-01	0.037200	9.15e-01
MITOCHONDRIAL ELECTRON TRANSPORT / ATP SYNTHESIS CYTOCHROME C OXIDASE	25	7.50e-01	0.036800	8.97e-01
SIGNALLING CALCIUM	202	3.85e-01	0.035400	6.18e-01
C1-METABOLISM	10	8.54e-01	-0.033700	9.44e-01
PROTEIN DEGRADATION UBIQUITIN UBIQUITIN	24	7.75e-01	0.033600	9.15e-01
PS LIGHTREACTION NADH DH	12	8.51e-01	-0.031300	9.44e-01
SIGNALLING RECEPTOR KINASES LEUCINE RICH REPEAT VIII VIII-2	14	8.48e-01	-0.029500	9.44e-01
STRESS BIOTIC	147	5.56e-01	-0.028200	7.42e-01
NOT ASSIGNED NO ONTOLOGY	1400	8.66e-02	-0.027400	2.19e-01
PROTEIN SYNTHESIS RIBOSOME BIOGENESIS PRE-RRNA PROCESSING AND MODIFICATIONS METHYLOTRANSFERASES	16	8.61e-01	0.025200	9.44e-01
RNA REGULATION OF TRANSCRIPTION C2C2(ZN) CO-LIKE, CONSTANS-LIKE ZINC FINGER FAMILY	24	8.32e-01	-0.025000	9.40e-01
MISC CYTOCHROME P450	164	5.86e-01	0.024700	7.55e-01
TCA / ORG TRANSFORMATION CARBONIC ANHYDRASES	10	9.05e-01	0.021800	9.71e-01
DNA UNSPECIFIED	85	7.59e-01	0.019300	9.03e-01
SIGNALLING LIGHT	89	7.79e-01	-0.017200	9.15e-01
PROTEIN DEGRADATION CYSTEINE PROTEASE	48	8.40e-01	0.016900	9.44e-01
CELL DIVISION	92	7.93e-01	0.015800	9.15e-01
SIGNALLING MAP KINASES	45	8.58e-01	-0.015500	9.44e-01
RNA REGULATION OF TRANSCRIPTION ZN-FINGER(CCHC)	10	9.34e-01	0.015200	9.90e-01
SIGNALLING RECEPTOR KINASES LEUCINE RICH REPEAT III	40	8.73e-01	0.014600	9.53e-01
RNA PROCESSING	101	8.04e-01	0.014300	9.15e-01
PROTEIN GLYCOSYLATION	27	9.00e-01	-0.014000	9.70e-01
BIODEGRADATION OF XENOBIOTICS LACTOYLGLUTATHIONE LYASE	11	9.45e-01	-0.012000	9.91e-01
STRESS ABIOTIC HEAT	157	8.00e-01	-0.011700	9.15e-01
REDOX THIOREDOXIN	50	8.90e-01	0.011300	9.63e-01
MISC PEROXIDASES	59	8.85e-01	-0.010900	9.61e-01
PROTEIN DEGRADATION	129	8.58e-01	0.009100	9.44e-01
REDOX GLUTAREDOXINS	31	9.37e-01	0.008190	9.90e-01
PROTEIN DEGRADATION SERINE PROTEASE	80	9.08e-01	-0.007450	9.71e-01
LIPID METABOLISM EXOTICS(STEROIDS, SQUALENE ETC)	16	9.59e-01	0.007340	9.91e-01
HORMONE METABOLISM SALICYLIC ACID SYNTHESIS-DEGRADATION	10	9.68e-01	0.007290	9.91e-01
CELL CYCLE PEPTIDYLPROLYL ISOMERASE	32	9.46e-01	-0.006920	9.91e-01
HORMONE METABOLISM ETHYLENE SYNTHESIS-DEGRADATION	20	9.61e-01	-0.006240	9.91e-01
RNA TRANSCRIPTION	84	9.29e-01	0.005600	9.90e-01
RNA PROCESSING SPLICING	58	9.50e-01	-0.004750	9.91e-01
PROTEIN TARGETING CHLOROPLAST	36	9.66e-01	0.004050	9.91e-01
PROTEIN POSTRANSLATIONAL MODIFICATION KINASE RECEPTOR LIKE CYTOPLASMATIC KINASE VI	14	9.84e-01	0.003110	9.96e-01
CELL WALL DEGRADATION MANNAN-XYLOSE-ARABINOSE-FUCOSE	16	9.84e-01	-0.002910	9.96e-01
HORMONE METABOLISM AUXIN INDUCED-REGULATED-RESPONSIVE-ACTIVATED	108	9.67e-01	-0.002290	9.91e-01
CO-FACTOR AND VITAMINE METABOLISM	15	9.89e-01	0.002040	9.96e-01
STRESS BIOTIC PR-PROTEINS PLANT DEFENSINS	13	9.92e-01	0.001670	9.96e-01
SECONDARY METABOLISM ISOPRENOIDS TERPENOIDS	28	9.93e-01	-0.001000	9.96e-01
SIGNALLING PHOSPHINOSITIDES PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE	18	9.96e-01	-0.000616	9.96e-01

Detailed Gene set reports

RNA_REGULATION_OF_TRANSCRIPTION_CCAAT_BOX_BINDING_FACTOR_FAMILY,_HAP2

RNA_REGULATION_OF_TRANSCRIPTION_CCAAT_BOX_BINDING_FACTOR_FAMILY,_HAP2
	168
set	RNA_REGULATION_OF_TRANSCRIPTION_CCAAT_BOX_BINDING_FACTOR_FAMILY,_HAP2
setSize	10
pANOVA	0.000138
s.dist	-0.696
p.adjustANOVA	0.00202

Top enriched genes

Top 20 genes
GeneID	Gene Rank
NFYA6	-9743
NFYA8	-9720
HAP2C	-9704
UNE8	-9703
NFYA10	-7718
NFYA9	-6546
NFYA5	-5986
NFYA1	-5749
NFYA7	-3676
NFYA4	1824

Click HERE to show all gene set members

All member genes
GeneID	Gene Rank
NFYA6	-9743
NFYA8	-9720
HAP2C	-9704
UNE8	-9703
NFYA10	-7718
NFYA9	-6546
NFYA5	-5986
NFYA1	-5749
NFYA7	-3676
NFYA4	1824

REDOX_THIOREDOXIN_PDIL

REDOX_THIOREDOXIN_PDIL
	149
set	REDOX_THIOREDOXIN_PDIL
setSize	13
pANOVA	7.37e-05
s.dist	0.635
p.adjustANOVA	0.00129

Top enriched genes

Top 20 genes
GeneID	Gene Rank
PDIL1-3	10487
PDIL2-2	10440
PDIL1-6	10242
PDIL2-3	9429
PDIL2-1	9360
PDIL1-4	9307
PDIL1-2	8570
PDIL1-5	7204
PDIL5-2	6256
ATPDIL5-4	5960
PDIL1-1	4329
PDIL5-1	3183
PDIL5-3	-3636

Click HERE to show all gene set members

All member genes
GeneID	Gene Rank
PDIL1-3	10487
PDIL2-2	10440
PDIL1-6	10242
PDIL2-3	9429
PDIL2-1	9360
PDIL1-4	9307
PDIL1-2	8570
PDIL1-5	7204
PDIL5-2	6256
ATPDIL5-4	5960
PDIL1-1	4329
PDIL5-1	3183
PDIL5-3	-3636

TRANSPORT_MAJOR_INTRINSIC_PROTEINS_PIP

TRANSPORT_MAJOR_INTRINSIC_PROTEINS_PIP
	249
set	TRANSPORT_MAJOR_INTRINSIC_PROTEINS_PIP
setSize	13
pANOVA	0.000176
s.dist	0.601
p.adjustANOVA	0.0022

Top enriched genes

Top 20 genes
GeneID	Gene Rank
PIP1.4	10672
PIP2-1	10635
PIP1B	10491
PIP2-7	10188
PIP2-3	10170
PIP2B	8519
PIP1-1	7596
PIP2-4	7453
PIP2-5	7181
PIP1-5	3347
PIP2-8	1946
PIP1-3	-125
PIP2-6	-1489

Click HERE to show all gene set members

All member genes
GeneID	Gene Rank
PIP1.4	10672
PIP2-1	10635
PIP1B	10491
PIP2-7	10188
PIP2-3	10170
PIP2B	8519
PIP1-1	7596
PIP2-4	7453
PIP2-5	7181
PIP1-5	3347
PIP2-8	1946
PIP1-3	-125
PIP2-6	-1489

RNA_REGULATION_OF_TRANSCRIPTION_G2-LIKE_TRANSCRIPTION_FACTOR_FAMILY,_GARP

RNA_REGULATION_OF_TRANSCRIPTION_G2-LIKE_TRANSCRIPTION_FACTOR_FAMILY,_GARP
	170
set	RNA_REGULATION_OF_TRANSCRIPTION_G2-LIKE_TRANSCRIPTION_FACTOR_FAMILY,_GARP
setSize	37
pANOVA	2.79e-10
s.dist	-0.599
p.adjustANOVA	2.45e-08

Top enriched genes

Top 20 genes
GeneID	Gene Rank
AT5G05090	-9501
PHL7	-9387
EFM	-9385
AT3G24120	-9331
KAN1	-9326
MYBC1	-9290
AT5G06800	-9242
AT1G14600	-9191
APL	-9159
AT2G38300	-8758
PHL13	-8716
MYR2	-8675
HRS1	-8626
MYR1	-8540
AT2G20400	-8108
AT2G42660	-8023
PHL1	-8017
HHO5	-7462
HHO3	-7071
PHL12	-6939

Click HERE to show all gene set members

All member genes
GeneID	Gene Rank
AT5G05090	-9501
PHL7	-9387
EFM	-9385
AT3G24120	-9331
KAN1	-9326
MYBC1	-9290
AT5G06800	-9242
AT1G14600	-9191
APL	-9159
AT2G38300	-8758
PHL13	-8716
MYR2	-8675
HRS1	-8626
MYR1	-8540
AT2G20400	-8108
AT2G42660	-8023
PHL1	-8017
HHO5	-7462
HHO3	-7071
PHL12	-6939
KAN2	-6853
AT4G35940	-6664
KAN3	-6556
HHO6	-6430
PCL1	-5766
AT1G69580	-5652
KAN4	-5260
AT3G10760	-5002
HHO2	-4234
PHR1	-3438
UNE16	-2296
AT2G40260	-1476
PHL11	-1063
GLK2	2352
PHL6	5175
GPRI1	5652
BOA	10460

CELL_WALL_CELLULOSE_SYNTHESIS

CELL_WALL_CELLULOSE_SYNTHESIS
	10
set	CELL_WALL_CELLULOSE_SYNTHESIS
setSize	14
pANOVA	0.00015
s.dist	0.585
p.adjustANOVA	0.00207

Top enriched genes

Top 20 genes
GeneID	Gene Rank
CSLA15	10628
ATCSLA01	9781
CSLC5	9435
KOR	9187
CSLC4	9142
CSLC6	8494
CSLA10	6203
CSLA9	6014
PNT1	5350
CSLA14	4869
ATCSLA11	4781
CSLC12	4561
CSLA2	3284
CSLC8	-744

Click HERE to show all gene set members

All member genes
GeneID	Gene Rank
CSLA15	10628
ATCSLA01	9781
CSLC5	9435
KOR	9187
CSLC4	9142
CSLC6	8494
CSLA10	6203
CSLA9	6014
PNT1	5350
CSLA14	4869
ATCSLA11	4781
CSLC12	4561
CSLA2	3284
CSLC8	-744

CELL_WALL_CELL_WALL_PROTEINS_HRGP

CELL_WALL_CELL_WALL_PROTEINS_HRGP
	13
set	CELL_WALL_CELL_WALL_PROTEINS_HRGP
setSize	14
pANOVA	0.000162
s.dist	-0.582
p.adjustANOVA	0.00213

Top enriched genes

Top 20 genes
GeneID	Gene Rank
AT4G08400	-9711
AT2G28240	-9623
AT5G12880	-9278
EXT2	-8678
EXT3	-8378
AT1G26240	-7897
AT4G08410	-7767
AT2G43150	-5514
ATEXT4	-5032
AT5G51680	-3881
AT4G28300	-3651
FRL4A	-1914
AT4G16790	-1269
FRL4B	5564

Click HERE to show all gene set members

All member genes
GeneID	Gene Rank
AT4G08400	-9711
AT2G28240	-9623
AT5G12880	-9278
EXT2	-8678
EXT3	-8378
AT1G26240	-7897
AT4G08410	-7767
AT2G43150	-5514
ATEXT4	-5032
AT5G51680	-3881
AT4G28300	-3651
FRL4A	-1914
AT4G16790	-1269
FRL4B	5564

HORMONE_METABOLISM_JASMONATE_INDUCED-REGULATED-RESPONSIVE-ACTIVATED

HORMONE_METABOLISM_JASMONATE_INDUCED-REGULATED-RESPONSIVE-ACTIVATED
	39
set	HORMONE_METABOLISM_JASMONATE_INDUCED-REGULATED-RESPONSIVE-ACTIVATED
setSize	13
pANOVA	0.000326
s.dist	0.576
p.adjustANOVA	0.0039

Top enriched genes

Top 20 genes
GeneID	Gene Rank
ATMLP-300B	10006
JAL9	9450
JAL10	8573
JAL8	8537
NSP3	8352
JAL34	8249
ESP	7673
JAL35	7405
NSP5	6932
PBP2	4488
JAL33	4119
JAL20	3028
JAL14	-3605

Click HERE to show all gene set members

All member genes
GeneID	Gene Rank
ATMLP-300B	10006
JAL9	9450
JAL10	8573
JAL8	8537
NSP3	8352
JAL34	8249
ESP	7673
JAL35	7405
NSP5	6932
PBP2	4488
JAL33	4119
JAL20	3028
JAL14	-3605

RNA_REGULATION_OF_TRANSCRIPTION_NUCLEOSOME/CHROMATIN_ASSEMBLY_FACTOR_GROUP

RNA_REGULATION_OF_TRANSCRIPTION_NUCLEOSOME/CHROMATIN_ASSEMBLY_FACTOR_GROUP
	184
set	RNA_REGULATION_OF_TRANSCRIPTION_NUCLEOSOME/CHROMATIN_ASSEMBLY_FACTOR_GROUP
setSize	13
pANOVA	0.000489
s.dist	-0.558
p.adjustANOVA	0.00536

Top enriched genes

Top 20 genes
GeneID	Gene Rank
HMGB2	-9069
HMGB5	-8343
AT5G08630	-8237
FAS2	-7955
HMGB9	-7436
HMGB10	-7421
HMGB1	-5882
HMGB7	-5709
HMGB6	-5594
HMGB4	-4970
HMGB12	-3299
HMGB3	-2430
SSRP1	7985

Click HERE to show all gene set members

All member genes
GeneID	Gene Rank
HMGB2	-9069
HMGB5	-8343
AT5G08630	-8237
FAS2	-7955
HMGB9	-7436
HMGB10	-7421
HMGB1	-5882
HMGB7	-5709
HMGB6	-5594
HMGB4	-4970
HMGB12	-3299
HMGB3	-2430
SSRP1	7985

NOT_ASSIGNED_NO_ONTOLOGY_PROLINE_RICH_FAMILY

NOT_ASSIGNED_NO_ONTOLOGY_PROLINE_RICH_FAMILY
	89
set	NOT_ASSIGNED_NO_ONTOLOGY_PROLINE_RICH_FAMILY
setSize	37
pANOVA	1.41e-08
s.dist	-0.539
p.adjustANOVA	9.27e-07

Top enriched genes

Top 20 genes
GeneID	Gene Rank
AT5G26080	-9649
AT2G24980	-9555
AT1G12810	-9507
AT5G06630	-9293
AT5G06640	-9187
AT1G61080	-9076
AT3G22070	-9044
AT5G11990	-9035
AT5G19810	-8954
AT4G08380	-8582
ELF5	-8523
AT3G20850	-8432
AT5G45350	-8386
AT3G54580	-8022
AT3G49845	-7797
AT4G19200	-7565
AT1G23720	-6821
WIH2	-6349
AT1G63830	-6230
AT1G70990	-6207

Click HERE to show all gene set members

All member genes
GeneID	Gene Rank
AT5G26080	-9649
AT2G24980	-9555
AT1G12810	-9507
AT5G06630	-9293
AT5G06640	-9187
AT1G61080	-9076
AT3G22070	-9044
AT5G11990	-9035
AT5G19810	-8954
AT4G08380	-8582
ELF5	-8523
AT3G20850	-8432
AT5G45350	-8386
AT3G54580	-8022
AT3G49845	-7797
AT4G19200	-7565
AT1G23720	-6821
WIH2	-6349
AT1G63830	-6230
AT1G70990	-6207
AT3G28550	-6169
AT4G00890	-5914
AT5G35190	-5850
AT1G31750	-5381
AT2G28440	-5292
AT4G18570	-4880
AT1G64450	-2950
AT3G49840	-2818
AT4G27850	-2202
AT4G13390	-1521
AT1G02110	-1504
AT4G16140	-726
AT3G51290	-437
AT2G34670	1668
AT3G09000	4734
AT2G16630	8939
MPH1	9714

DEVELOPMENT_LATE_EMBRYOGENESIS_ABUNDANT

DEVELOPMENT_LATE_EMBRYOGENESIS_ABUNDANT
	20
set	DEVELOPMENT_LATE_EMBRYOGENESIS_ABUNDANT
setSize	18
pANOVA	9.63e-05
s.dist	0.531
p.adjustANOVA	0.00158

Top enriched genes

Top 20 genes
GeneID	Gene Rank
AT3G19430	10632
LEA46	10555
LEA29	10543
AT2G44060	10525
AT1G54890	10250
AT5G54370	10029
LEA2	9946
AT5G60520	8441
LEA7	7538
ECP63	6573
SAG21	6155
AT5G60530	4824
AT4G27400	4681
AT3G50790	2795
LEA14	2533
LEA18	975
AT2G46140	-4006
AT3G53040	-6083

Click HERE to show all gene set members

All member genes
GeneID	Gene Rank
AT3G19430	10632
LEA46	10555
LEA29	10543
AT2G44060	10525
AT1G54890	10250
AT5G54370	10029
LEA2	9946
AT5G60520	8441
LEA7	7538
ECP63	6573
SAG21	6155
AT5G60530	4824
AT4G27400	4681
AT3G50790	2795
LEA14	2533
LEA18	975
AT2G46140	-4006
AT3G53040	-6083

SECONDARY_METABOLISM_ISOPRENOIDS_NON-MEVALONATE_PATHWAY_GERANYLGERANYL_PYROPHOSPHATE_SYNTHASE

SECONDARY_METABOLISM_ISOPRENOIDS_NON-MEVALONATE_PATHWAY_GERANYLGERANYL_PYROPHOSPHATE_SYNTHASE
	200
set	SECONDARY_METABOLISM_ISOPRENOIDS_NON-MEVALONATE_PATHWAY_GERANYLGERANYL_PYROPHOSPHATE_SYNTHASE
setSize	10
pANOVA	0.00973
s.dist	0.472
p.adjustANOVA	0.0522

Top enriched genes

Top 20 genes
GeneID	Gene Rank
GGPPS1	10043
AT3G20160	9355
AT2G18620	8062
GGPP6	7757
GGPPS2	7271
GGPP4	4857
AT3G14510	3004
GGPPS9	2284
GGR	2056
AT3G29430	-1313

Click HERE to show all gene set members

All member genes
GeneID	Gene Rank
GGPPS1	10043
AT3G20160	9355
AT2G18620	8062
GGPP6	7757
GGPPS2	7271
GGPP4	4857
AT3G14510	3004
GGPPS9	2284
GGR	2056
AT3G29430	-1313

RNA_REGULATION_OF_TRANSCRIPTION_MADS_BOX_TRANSCRIPTION_FACTOR_FAMILY

RNA_REGULATION_OF_TRANSCRIPTION_MADS_BOX_TRANSCRIPTION_FACTOR_FAMILY
	179
set	RNA_REGULATION_OF_TRANSCRIPTION_MADS_BOX_TRANSCRIPTION_FACTOR_FAMILY
setSize	27
pANOVA	2.42e-05
s.dist	-0.469
p.adjustANOVA	0.00058

Top enriched genes

Top 20 genes
GeneID	Gene Rank
SOC1	-9772
AGL71	-9729
ANR1	-9635
AGL16	-9610
AGL19	-9475
MAF5	-8867
AGL42	-8735
AGL21	-8473
AGL87	-8243
AGL31	-7862
AGL102	-7413
AGL65	-6941
MAF3	-6739
AGL17	-5859
SEP3	-5510
MAF1	-4891
AT5G49420	-3875
AGL12	-3031
AGL62	-2760
AGL14	-1840

Click HERE to show all gene set members

All member genes
GeneID	Gene Rank
SOC1	-9772
AGL71	-9729
ANR1	-9635
AGL16	-9610
AGL19	-9475
MAF5	-8867
AGL42	-8735
AGL21	-8473
AGL87	-8243
AGL31	-7862
AGL102	-7413
AGL65	-6941
MAF3	-6739
AGL17	-5859
SEP3	-5510
MAF1	-4891
AT5G49420	-3875
AGL12	-3031
AGL62	-2760
AGL14	-1840
AGL80	-1508
FLC	-820
AT3G49400	-482
AGL3	3720
AGL18	5251
AGL24	6638
SEP1	9299

SIGNALLING_RECEPTOR_KINASES_LEUCINE_RICH_REPEAT_X

SIGNALLING_RECEPTOR_KINASES_LEUCINE_RICH_REPEAT_X
	225
set	SIGNALLING_RECEPTOR_KINASES_LEUCINE_RICH_REPEAT_X
setSize	12
pANOVA	0.00517
s.dist	0.466
p.adjustANOVA	0.0316

Top enriched genes

Top 20 genes
GeneID	Gene Rank
PSKR2	9858
PSKR1	9479
AT1G27190	9038
BIR2	8783
EMS1	8538
BIR1	7989
AT1G69990	5747
PXC3	5543
AT1G34420	2974
PSY1R	1654
BRL1	-909
AT5G42440	-5379

Click HERE to show all gene set members

All member genes
GeneID	Gene Rank
PSKR2	9858
PSKR1	9479
AT1G27190	9038
BIR2	8783
EMS1	8538
BIR1	7989
AT1G69990	5747
PXC3	5543
AT1G34420	2974
PSY1R	1654
BRL1	-909
AT5G42440	-5379

CELL_WALL_CELLULOSE_SYNTHESIS_CELLULOSE_SYNTHASE

CELL_WALL_CELLULOSE_SYNTHESIS_CELLULOSE_SYNTHASE
	11
set	CELL_WALL_CELLULOSE_SYNTHESIS_CELLULOSE_SYNTHASE
setSize	25
pANOVA	5.82e-05
s.dist	0.464
p.adjustANOVA	0.00118

Top enriched genes

Top 20 genes
GeneID	Gene Rank
CSLB1	10351
CESA1	10296
CESA3	10277
CESA5	10275
CSLD3	10041
CSLE1	9988
CSLD5	9717
CESA6	9311
CESA2	8250
CSLD2	7925
CSLB5	6655
CESA4	6408
CSLB4	5732
CSLB2	5502
CSLA3	4974
CESA8	4185
CESA9	3330
CSLG3	1658
CSLG1	1490
CSLG2	925

Click HERE to show all gene set members

All member genes
GeneID	Gene Rank
CSLB1	10351
CESA1	10296
CESA3	10277
CESA5	10275
CSLD3	10041
CSLE1	9988
CSLD5	9717
CESA6	9311
CESA2	8250
CSLD2	7925
CSLB5	6655
CESA4	6408
CSLB4	5732
CSLB2	5502
CSLA3	4974
CESA8	4185
CESA9	3330
CSLG3	1658
CSLG1	1490
CSLG2	925
CSLD1	341
CSLB3	127
CESA7	-204
CESA10	-2289
CSLA7	-3891

CELL_WALL_CELL_WALL_PROTEINS_LRR

CELL_WALL_CELL_WALL_PROTEINS_LRR
	14
set	CELL_WALL_CELL_WALL_PROTEINS_LRR
setSize	16
pANOVA	0.0016
s.dist	-0.456
p.adjustANOVA	0.0124

Top enriched genes

Top 20 genes
GeneID	Gene Rank
PEX4	-9160
AT1G49490	-8976
PEX3	-8775
AT1G26250	-8444
PEX1	-8030
LRX1	-7246
AT4G06744	-6394
AT2G46630	-6311
AtRLP29	-5584
AT4G29240	-5396
LRX3	-5116
LRX5	-1803
LRX4	1165
LRX2	2124
AT2G19780	4375
LRX6	6342

Click HERE to show all gene set members

All member genes
GeneID	Gene Rank
PEX4	-9160
AT1G49490	-8976
PEX3	-8775
AT1G26250	-8444
PEX1	-8030
LRX1	-7246
AT4G06744	-6394
AT2G46630	-6311
AtRLP29	-5584
AT4G29240	-5396
LRX3	-5116
LRX5	-1803
LRX4	1165
LRX2	2124
AT2G19780	4375
LRX6	6342

PROTEIN_SYNTHESIS_ELONGATION

PROTEIN_SYNTHESIS_ELONGATION
	122
set	PROTEIN_SYNTHESIS_ELONGATION
setSize	29
pANOVA	2.43e-05
s.dist	0.453
p.adjustANOVA	0.00058

Top enriched genes

Top 20 genes
GeneID	Gene Rank
A1	10770
LOS1	10671
AT5G12110	10358
AT1G57720	9999
TUFA	9986
CPEFG	9515
AT4G10480	9413
AT5G19510	9323
AT1G09640	9290
TFIIS	8760
CLO	8684
AT1G30230	7794
AT2G31060	7599
AT3G22980	6610
ACR7	6399
NACA2	6053
AT2G18110	6000
MEFG2	5445
AT3G08740	5182
AT5G10630	5087

Click HERE to show all gene set members

All member genes
GeneID	Gene Rank
A1	10770
LOS1	10671
AT5G12110	10358
AT1G57720	9999
TUFA	9986
CPEFG	9515
AT4G10480	9413
AT5G19510	9323
AT1G09640	9290
TFIIS	8760
CLO	8684
AT1G30230	7794
AT2G31060	7599
AT3G22980	6610
ACR7	6399
NACA2	6053
AT2G18110	6000
MEFG2	5445
AT3G08740	5182
AT5G10630	5087
AT3G12915	5048
EFTS	4097
emb2726	2905
AT5G13650	235
AT4G26310	-594
MEFG1	-3759
ATRNL	-3949
GFL	-8964
AT3G12390	-9043

LIPID_METABOLISM_PHOSPHOLIPID_SYNTHESIS

LIPID_METABOLISM_PHOSPHOLIPID_SYNTHESIS
	48
set	LIPID_METABOLISM_PHOSPHOLIPID_SYNTHESIS
setSize	16
pANOVA	0.00178
s.dist	0.451
p.adjustANOVA	0.0134

Top enriched genes

Top 20 genes
GeneID	Gene Rank
GPAT4	10706
GPAT2	10623
ATGPAT3	10530
GPAT8	9910
GPAT7	9651
GPAT5	8489
AT1G73600	7004
CLS	6964
NMT2	6679
GPAT1	5970
LCKB2	2700
GPAT6	2048
PGPS1	1838
AT1G15110	191
NMT1	-5275
AT3G05510	-6099

Click HERE to show all gene set members

All member genes
GeneID	Gene Rank
GPAT4	10706
GPAT2	10623
ATGPAT3	10530
GPAT8	9910
GPAT7	9651
GPAT5	8489
AT1G73600	7004
CLS	6964
NMT2	6679
GPAT1	5970
LCKB2	2700
GPAT6	2048
PGPS1	1838
AT1G15110	191
NMT1	-5275
AT3G05510	-6099

RNA_REGULATION_OF_TRANSCRIPTION_SNF7

RNA_REGULATION_OF_TRANSCRIPTION_SNF7
	190
set	RNA_REGULATION_OF_TRANSCRIPTION_SNF7
setSize	12
pANOVA	0.00783
s.dist	-0.443
p.adjustANOVA	0.0448

Top enriched genes

Top 20 genes
GeneID	Gene Rank
VPS24-1	-9198
VPS32.1	-9079
VPS2.3	-8788
VPS2.1	-8489
VPS60.2	-7549
VPS20.1	-7077
VPS32.2	-3862
CHMP1A	-2393
VPS2.2	-2215
AT3G62080	1638
VPS60.1	3703
CHMP1B	4406

Click HERE to show all gene set members

All member genes
GeneID	Gene Rank
VPS24-1	-9198
VPS32.1	-9079
VPS2.3	-8788
VPS2.1	-8489
VPS60.2	-7549
VPS20.1	-7077
VPS32.2	-3862
CHMP1A	-2393
VPS2.2	-2215
AT3G62080	1638
VPS60.1	3703
CHMP1B	4406

TRANSPORT_CALCIUM

TRANSPORT_CALCIUM
	247
set	TRANSPORT_CALCIUM
setSize	21
pANOVA	0.00107
s.dist	0.413
p.adjustANOVA	0.00966

Top enriched genes

Top 20 genes
GeneID	Gene Rank
CAX2	10413
ACA1	10085
CCX5	9887
ECA4	9568
GRXS14	9464
TPC1	9084
CXIP4	8784
CAX4	8004
ECA2	7531
CAX3	7248
CCX1	7242
ECA1	7171
ECA3	6122
CCX2	3044
CCX3	1135
ACA8	962
EAAC	320
GRXS16	-1942
CAX5	-2422
CAX1	-3821

Click HERE to show all gene set members

All member genes
GeneID	Gene Rank
CAX2	10413
ACA1	10085
CCX5	9887
ECA4	9568
GRXS14	9464
TPC1	9084
CXIP4	8784
CAX4	8004
ECA2	7531
CAX3	7248
CCX1	7242
ECA1	7171
ECA3	6122
CCX2	3044
CCX3	1135
ACA8	962
EAAC	320
GRXS16	-1942
CAX5	-2422
CAX1	-3821
AT1G54110	-8711

PS_LIGHTREACTION_PHOTOSYSTEM_II_LHC-II

PS_LIGHTREACTION_PHOTOSYSTEM_II_LHC-II
	140
set	PS_LIGHTREACTION_PHOTOSYSTEM_II_LHC-II
setSize	14
pANOVA	0.0129
s.dist	0.384
p.adjustANOVA	0.0654

Top enriched genes

Top 20 genes
GeneID	Gene Rank
LHCB2.2	9432
LHCB2.1	8627
LHCB2.4	8016
LHCB5	7775
LHCB6	7201
LHCB1.3	5724
LHCB4.1	5208
LHCB1.1	4694
LHCB7	3644
LHCB3	1974
LHCB4.3	1527
LHB1B1	943
LHB1B2	769
LHCB4.2	-3548

Click HERE to show all gene set members

All member genes
GeneID	Gene Rank
LHCB2.2	9432
LHCB2.1	8627
LHCB2.4	8016
LHCB5	7775
LHCB6	7201
LHCB1.3	5724
LHCB4.1	5208
LHCB1.1	4694
LHCB7	3644
LHCB3	1974
LHCB4.3	1527
LHB1B1	943
LHB1B2	769
LHCB4.2	-3548

HORMONE_METABOLISM_ABSCISIC_ACID_SYNTHESIS-DEGRADATION

HORMONE_METABOLISM_ABSCISIC_ACID_SYNTHESIS-DEGRADATION
	30
set	HORMONE_METABOLISM_ABSCISIC_ACID_SYNTHESIS-DEGRADATION
setSize	10
pANOVA	0.0405
s.dist	-0.374
p.adjustANOVA	0.144

Top enriched genes

Top 20 genes
GeneID	Gene Rank
CCD8	-8759
HVA22I	-8198
HVA22F	-7252
HVA22G	-5978
HVA22H	-5451
CCD7	-3146
UGT71B6	-1891
SIR3	-1672
AAO4	767
AAO2	7942

Click HERE to show all gene set members

All member genes
GeneID	Gene Rank
CCD8	-8759
HVA22I	-8198
HVA22F	-7252
HVA22G	-5978
HVA22H	-5451
CCD7	-3146
UGT71B6	-1891
SIR3	-1672
AAO4	767
AAO2	7942

PS_LIGHTREACTION_CYCLIC_ELECTRON_FLOW-CHLORORESPIRATION

PS_LIGHTREACTION_CYCLIC_ELECTRON_FLOW-CHLORORESPIRATION
	138
set	PS_LIGHTREACTION_CYCLIC_ELECTRON_FLOW-CHLORORESPIRATION
setSize	12
pANOVA	0.0249
s.dist	0.374
p.adjustANOVA	0.106

Top enriched genes

Top 20 genes
GeneID	Gene Rank
NDHI	10486.0
NDHB.1	10299.5
NDHB.2	10299.5
NDHA	10291.0
NDHE	10130.0
NDHH	8886.0
PGRL1A	6077.0
AOX4	2330.0
PGR5	-1364.0
PGRL1B	-1911.0
NDF2	-5362.0
PIFI	-8245.0

Click HERE to show all gene set members

All member genes
GeneID	Gene Rank
NDHI	10486.0
NDHB.1	10299.5
NDHB.2	10299.5
NDHA	10291.0
NDHE	10130.0
NDHH	8886.0
PGRL1A	6077.0
AOX4	2330.0
PGR5	-1364.0
PGRL1B	-1911.0
NDF2	-5362.0
PIFI	-8245.0

NOT_ASSIGNED_NO_ONTOLOGY_GLYCINE_RICH_PROTEINS

NOT_ASSIGNED_NO_ONTOLOGY_GLYCINE_RICH_PROTEINS
	86
set	NOT_ASSIGNED_NO_ONTOLOGY_GLYCINE_RICH_PROTEINS
setSize	52
pANOVA	6.86e-06
s.dist	-0.361
p.adjustANOVA	0.000201

Top enriched genes

Top 20 genes
GeneID	Gene Rank
AT5G28630	-9800
HIPP33	-9739
AT5G61660	-9674
AT4G08230	-9632
AT5G46730	-9577
AT1G07135	-9544
AT2G05510	-9379
TGD5	-9276
GRP5	-9273
AT2G05580	-9258
AT3G04640	-9220
AT1G04660	-9097
AT1G27710	-8912
AT3G59640	-8888
AT1G67870	-8732
AT1G15280	-8602
AT4G21620	-8572
AT5G49350	-8232
OPSL1	-8207
GRP3S	-7865

Click HERE to show all gene set members

All member genes
GeneID	Gene Rank
AT5G28630	-9800
HIPP33	-9739
AT5G61660	-9674
AT4G08230	-9632
AT5G46730	-9577
AT1G07135	-9544
AT2G05510	-9379
TGD5	-9276
GRP5	-9273
AT2G05580	-9258
AT3G04640	-9220
AT1G04660	-9097
AT1G27710	-8912
AT3G59640	-8888
AT1G67870	-8732
AT1G15280	-8602
AT4G21620	-8572
AT5G49350	-8232
OPSL1	-8207
GRP3S	-7865
AT4G18280	-7725
P23-1	-7580
AT4G22740	-7092
AT2G05540	-7008
AT5G47020	-6434
GRP3	-6115
AT5G17650	-6039
GRP23	-5780
AT4G36230	-5257
AT1G27090	-5150
AT3G29075	-3776
DOT1	-2822
AT1G75550	-2644
OPS	-144
GRDP1	173
GRDP2	1281
GIF1	1559
ATGRP9	2082
GRP18	2861
AT2G15780	2895
AT1G66820	3853
AT4G17620	4133
AT4G29020	4913
AT5G11700	5477
AT4G37682	5531
AT4G10330	5799
AT1G04800	6134
AT4G30450	6223
AT4G32920	7688
AT4G30460	8173
AT3G06780	8561
AT4G38710	10459

RNA_REGULATION_OF_TRANSCRIPTION_WRKY_DOMAIN_TRANSCRIPTION_FACTOR_FAMILY

RNA_REGULATION_OF_TRANSCRIPTION_WRKY_DOMAIN_TRANSCRIPTION_FACTOR_FAMILY
	194
set	RNA_REGULATION_OF_TRANSCRIPTION_WRKY_DOMAIN_TRANSCRIPTION_FACTOR_FAMILY
setSize	61
pANOVA	3.14e-06
s.dist	-0.345
p.adjustANOVA	0.000138

Top enriched genes

Top 20 genes
GeneID	Gene Rank
WRKY72	-9733
WRKY2	-9707
WRKY3	-9651
WRKY41	-9650
WRKY14	-9602
WRKY30	-9586
WRKY7	-9539
WRKY26	-9404
WRKY36	-9395
WRKY61	-9095
WRKY27	-9091
WRKY43	-8946
WRKY56	-8714
WRKY33	-8679
WRKY54	-8589
WRKY55	-8551
WRKY12	-8446
WRKY47	-8381
WRKY20	-8290
WRKY35	-7470

Click HERE to show all gene set members

All member genes
GeneID	Gene Rank
WRKY72	-9733
WRKY2	-9707
WRKY3	-9651
WRKY41	-9650
WRKY14	-9602
WRKY30	-9586
WRKY7	-9539
WRKY26	-9404
WRKY36	-9395
WRKY61	-9095
WRKY27	-9091
WRKY43	-8946
WRKY56	-8714
WRKY33	-8679
WRKY54	-8589
WRKY55	-8551
WRKY12	-8446
WRKY47	-8381
WRKY20	-8290
WRKY35	-7470
WRKY1	-7466
WRKY32	-7292
WRKY71	-7116
WRKY13	-6953
WRKY4	-6940
WRKY69	-6576
WRKY24	-5842
WRKY45	-4892
POLAR	-4589
WRKY57	-4205
WRKY15	-3870
WRKY8	-3496
WRKY25	-3179
WRKY58	-3110
WRKY70	-2948
WRKY75	-2772
WRKY11	-2541
WRKY9	-2436
WRKY44	-1309
WRKY60	-1164
WRKY6	-746
WRKY29	-510
WRKY22	-179
WRKY65	40
WRKY53	1380
WRKY51	2166
WRKY74	2245
WRKY42	2855
WRKY59	3819
WRKY31	3918
WRKY18	3999
WRKY50	4214
WRKY46	4909
WRKY48	5395
WRKY39	5533
WRKY17	5908
WRKY19	6063
WRKY21	6551
WRKY40	6982
WRKY28	8320
WRKY23	9938

METAL_HANDLING

METAL_HANDLING
	49
set	METAL_HANDLING
setSize	10
pANOVA	0.0614
s.dist	-0.342
p.adjustANOVA	0.186

Top enriched genes

Top 20 genes
GeneID	Gene Rank
HIPP16	-9616
HIPP36	-9233
AT4G19070	-7214
ATAILP1	-6674
SELT	-5076
AT5G58640	-4595
SBP3	-3736
SBP2	877
COBL9	4440
SBP1	10537

Click HERE to show all gene set members

All member genes
GeneID	Gene Rank
HIPP16	-9616
HIPP36	-9233
AT4G19070	-7214
ATAILP1	-6674
SELT	-5076
AT5G58640	-4595
SBP3	-3736
SBP2	877
COBL9	4440
SBP1	10537

HORMONE_METABOLISM_AUXIN_SYNTHESIS-DEGRADATION

HORMONE_METABOLISM_AUXIN_SYNTHESIS-DEGRADATION
	33
set	HORMONE_METABOLISM_AUXIN_SYNTHESIS-DEGRADATION
setSize	13
pANOVA	0.035
s.dist	0.338
p.adjustANOVA	0.136

Top enriched genes

Top 20 genes
GeneID	Gene Rank
NIT1	10590
UGT74B1	9962
ILL6	9637
UGT79B5	9251
ILL4	8551
ILR1	6007
UGT1	5803
ILL3	4970
NIT2	1361
IAMT1	832
ILL2	-2768
ILL1	-4788
TGG2	-8001

Click HERE to show all gene set members

All member genes
GeneID	Gene Rank
NIT1	10590
UGT74B1	9962
ILL6	9637
UGT79B5	9251
ILL4	8551
ILR1	6007
UGT1	5803
ILL3	4970
NIT2	1361
IAMT1	832
ILL2	-2768
ILL1	-4788
TGG2	-8001

NOT_ASSIGNED_NO_ONTOLOGY_ABC1_FAMILY_PROTEIN

NOT_ASSIGNED_NO_ONTOLOGY_ABC1_FAMILY_PROTEIN
	79
set	NOT_ASSIGNED_NO_ONTOLOGY_ABC1_FAMILY_PROTEIN
setSize	11
pANOVA	0.053
s.dist	0.337
p.adjustANOVA	0.174

Top enriched genes

Top 20 genes
GeneID	Gene Rank
AT1G71810	7492
AT3G24190	6939
AT1G61640	6878
AT5G24810	6331
AT5G50330	6052
AT1G11390	5393
ATATH8	5289
AT5G24970	5237
AT3G07700	2188
ATATH9	-4168
AT4G24810	-4209

Click HERE to show all gene set members

All member genes
GeneID	Gene Rank
AT1G71810	7492
AT3G24190	6939
AT1G61640	6878
AT5G24810	6331
AT5G50330	6052
AT1G11390	5393
ATATH8	5289
AT5G24970	5237
AT3G07700	2188
ATATH9	-4168
AT4G24810	-4209

RNA_REGULATION_OF_TRANSCRIPTION_GEBP_LIKE

RNA_REGULATION_OF_TRANSCRIPTION_GEBP_LIKE
	171
set	RNA_REGULATION_OF_TRANSCRIPTION_GEBP_LIKE
setSize	10
pANOVA	0.0659
s.dist	0.336
p.adjustANOVA	0.195

Top enriched genes

Top 20 genes
GeneID	Gene Rank
GEBPL	10518
STKL1	8937
AT5G28040	7967
AT1G61730	7403
AT1G44810	7394
AT3G04930	3511
GEBP	3510
GPL1	-806
GPL3	-4305
GPL2	-4763

Click HERE to show all gene set members

All member genes
GeneID	Gene Rank
GEBPL	10518
STKL1	8937
AT5G28040	7967
AT1G61730	7403
AT1G44810	7394
AT3G04930	3511
GEBP	3510
GPL1	-806
GPL3	-4305
GPL2	-4763

RNA_REGULATION_OF_TRANSCRIPTION_AUX/IAA_FAMILY

RNA_REGULATION_OF_TRANSCRIPTION_AUX/IAA_FAMILY
	159
set	RNA_REGULATION_OF_TRANSCRIPTION_AUX/IAA_FAMILY
setSize	23
pANOVA	0.0059
s.dist	0.332
p.adjustANOVA	0.0353

Top enriched genes

Top 20 genes
GeneID	Gene Rank
IAA5	10397
IAA19	10160
IAA8	9829
IAA7	9708
IAA17	9206
IAA9	8600
IAA13	7818
IAA14	7205
IAA30	5368
SHY2	5102
IAA12	3943
IAA6	2724
IAA2	2397
IAA4	2136
IAA18	1108
IAA16	997
IAA10	926
IAA29	694
IAA11	553
IAA28	-403

Click HERE to show all gene set members

All member genes
GeneID	Gene Rank
IAA5	10397
IAA19	10160
IAA8	9829
IAA7	9708
IAA17	9206
IAA9	8600
IAA13	7818
IAA14	7205
IAA30	5368
SHY2	5102
IAA12	3943
IAA6	2724
IAA2	2397
IAA4	2136
IAA18	1108
IAA16	997
IAA10	926
IAA29	694
IAA11	553
IAA28	-403
IAA32	-2854
IAA26	-2925
IAA1	-3206

RNA_REGULATION_OF_TRANSCRIPTION_ARF,_AUXIN_RESPONSE_FACTOR_FAMILY

RNA_REGULATION_OF_TRANSCRIPTION_ARF,_AUXIN_RESPONSE_FACTOR_FAMILY
	156
set	RNA_REGULATION_OF_TRANSCRIPTION_ARF,_AUXIN_RESPONSE_FACTOR_FAMILY
setSize	16
pANOVA	0.0223
s.dist	-0.33
p.adjustANOVA	0.0994

Top enriched genes

Top 20 genes
GeneID	Gene Rank
ARF9	-9089
ARF17	-8448
ARF20	-7053
ARF11	-7018
ARF19	-6002
ARF3	-4368
ARF4	-3858
ARF6	-3353
ARF8	-2884
ARF18	-2488
ARF10	-1413
ARF2	-467
ARF16	203
ARF14	1517
ARF1	2106
ARF5	6076

Click HERE to show all gene set members

All member genes
GeneID	Gene Rank
ARF9	-9089
ARF17	-8448
ARF20	-7053
ARF11	-7018
ARF19	-6002
ARF3	-4368
ARF4	-3858
ARF6	-3353
ARF8	-2884
ARF18	-2488
ARF10	-1413
ARF2	-467
ARF16	203
ARF14	1517
ARF1	2106
ARF5	6076

SIGNALLING_RECEPTOR_KINASES_LEUCINE_RICH_REPEAT_II

SIGNALLING_RECEPTOR_KINASES_LEUCINE_RICH_REPEAT_II
	220
set	SIGNALLING_RECEPTOR_KINASES_LEUCINE_RICH_REPEAT_II
setSize	13
pANOVA	0.0397
s.dist	0.329
p.adjustANOVA	0.144

Top enriched genes

Top 20 genes
GeneID	Gene Rank
SERK4	9662
AT5G10290	8425
AT4G30520	7376
NIK1	6762
NIK3	6282
NIK2	5381
AT5G45780	4842
AT5G65240	3604
SERK1	2308
SERK5	1751
SERK2	1501
AT2G23950	817
AT5G63710	-8401

Click HERE to show all gene set members

All member genes
GeneID	Gene Rank
SERK4	9662
AT5G10290	8425
AT4G30520	7376
NIK1	6762
NIK3	6282
NIK2	5381
AT5G45780	4842
AT5G65240	3604
SERK1	2308
SERK5	1751
SERK2	1501
AT2G23950	817
AT5G63710	-8401

MITOCHONDRIAL_ELECTRON_TRANSPORT_/_ATP_SYNTHESIS_CYTOCHROME_C_REDUCTASE

MITOCHONDRIAL_ELECTRON_TRANSPORT_/_ATP_SYNTHESIS_CYTOCHROME_C_REDUCTASE
	75
set	MITOCHONDRIAL_ELECTRON_TRANSPORT_/_ATP_SYNTHESIS_CYTOCHROME_C_REDUCTASE
setSize	10
pANOVA	0.0788
s.dist	-0.321
p.adjustANOVA	0.207

Top enriched genes

Top 20 genes
GeneID	Gene Rank
AT3G10860	-9688
AT3G52730	-8782
AT1G36380	-8781
AT5G05370	-8687
AT1G15120	-8310
QCR7-1	-7947
QCR7-2	3500
UCR1-1	4436
UCR1-2	5759
AT2G07727	10320

Click HERE to show all gene set members

All member genes
GeneID	Gene Rank
AT3G10860	-9688
AT3G52730	-8782
AT1G36380	-8781
AT5G05370	-8687
AT1G15120	-8310
QCR7-1	-7947
QCR7-2	3500
UCR1-1	4436
UCR1-2	5759
AT2G07727	10320

MITOCHONDRIAL_ELECTRON_TRANSPORT_/_ATP_SYNTHESIS_CYTOCHROME_C

MITOCHONDRIAL_ELECTRON_TRANSPORT_/_ATP_SYNTHESIS_CYTOCHROME_C
	73
set	MITOCHONDRIAL_ELECTRON_TRANSPORT_/_ATP_SYNTHESIS_CYTOCHROME_C
setSize	10
pANOVA	0.0797
s.dist	0.32
p.adjustANOVA	0.207

Top enriched genes

Top 20 genes
GeneID	Gene Rank
CYC11	9784
CYC12	9743
ATG1	9032
CCB452	9006
CCB203	8582
CCB382	2556
CCS1	1734
CYTC-2	-2224
CYTC-1	-3501
CCMH	-6970

Click HERE to show all gene set members

All member genes
GeneID	Gene Rank
CYC11	9784
CYC12	9743
ATG1	9032
CCB452	9006
CCB203	8582
CCB382	2556
CCS1	1734
CYTC-2	-2224
CYTC-1	-3501
CCMH	-6970

DEVELOPMENT_STORAGE_PROTEINS

DEVELOPMENT_STORAGE_PROTEINS
	22
set	DEVELOPMENT_STORAGE_PROTEINS
setSize	18
pANOVA	0.0193
s.dist	0.318
p.adjustANOVA	0.0892

Top enriched genes

Top 20 genes
GeneID	Gene Rank
PLP3	10522
PLP7	10374
PLP1	9992
AT1G07750	9593
PLP6	8688
PLP9	8664
AT1G33270	7780
CRB	7285
PLP8	7234
AT5G44020	6482
VSP2	3523
PLP5	1459
SDP1	-631
AT5G19120	-1326
SDP1L	-3679
VSP1	-4353
PLP2	-5742
AT5G43590	-8256

Click HERE to show all gene set members

All member genes
GeneID	Gene Rank
PLP3	10522
PLP7	10374
PLP1	9992
AT1G07750	9593
PLP6	8688
PLP9	8664
AT1G33270	7780
CRB	7285
PLP8	7234
AT5G44020	6482
VSP2	3523
PLP5	1459
SDP1	-631
AT5G19120	-1326
SDP1L	-3679
VSP1	-4353
PLP2	-5742
AT5G43590	-8256

RNA_REGULATION_OF_TRANSCRIPTION_ZF-HD

RNA_REGULATION_OF_TRANSCRIPTION_ZF-HD
	195
set	RNA_REGULATION_OF_TRANSCRIPTION_ZF-HD
setSize	14
pANOVA	0.0411
s.dist	-0.315
p.adjustANOVA	0.144

Top enriched genes

Top 20 genes
GeneID	Gene Rank
ZHD4	-8952
ZHD10	-8333
ZHD6	-7483
ZHD9	-6807
ZHD13	-6754
ZHD3	-6229
ZHD1	-5790
ZHD7	-3546
ATHB22	-2153
MIF1	-553
ZHD14	-73
ZHD8	3463
ZHD5	5361
ZHD11	9223

Click HERE to show all gene set members

All member genes
GeneID	Gene Rank
ZHD4	-8952
ZHD10	-8333
ZHD6	-7483
ZHD9	-6807
ZHD13	-6754
ZHD3	-6229
ZHD1	-5790
ZHD7	-3546
ATHB22	-2153
MIF1	-553
ZHD14	-73
ZHD8	3463
ZHD5	5361
ZHD11	9223

PROTEIN_DEGRADATION_UBIQUITIN_E2

PROTEIN_DEGRADATION_UBIQUITIN_E2
	106
set	PROTEIN_DEGRADATION_UBIQUITIN_E2
setSize	38
pANOVA	0.00113
s.dist	-0.305
p.adjustANOVA	0.00994

Top enriched genes

Top 20 genes
GeneID	Gene Rank
COP10	-9657
UBC8	-9609
UBC28	-9415
UBC29	-9347
UBC35	-9190
PEX4	-9160
UBC36	-8637
UBC2	-8299
UBC9	-8287
UBC3	-7933
UBC17	-7516
UBC16	-7185
RCE1	-6882
UBC19	-6534
UBC30	-6408
UBC15	-5821
MMZ3	-5581
UBC13	-4879
UBC11	-3593
ATRBL15	-3488

Click HERE to show all gene set members

All member genes
GeneID	Gene Rank
COP10	-9657
UBC8	-9609
UBC28	-9415
UBC29	-9347
UBC35	-9190
PEX4	-9160
UBC36	-8637
UBC2	-8299
UBC9	-8287
UBC3	-7933
UBC17	-7516
UBC16	-7185
RCE1	-6882
UBC19	-6534
UBC30	-6408
UBC15	-5821
MMZ3	-5581
UBC13	-4879
UBC11	-3593
ATRBL15	-3488
UBC32	-2674
UBC1	-2315
UBC22	-1630
UBC12	-1500
UBC5	-917
UBC18	-576
UBC4	1239
UEV1B	1643
UBC24	2320
UEV1A	4035
SCE1	4310
UBC10	4648
UEV1D-4	4741
UBC20	4867
UBC6	5072
UBC7	6321
UBC25	8203
UBC14	8926

NOT_ASSIGNED_NO_ONTOLOGY_ARMADILLO/BETA-CATENIN_REPEAT_FAMILY_PROTEIN

NOT_ASSIGNED_NO_ONTOLOGY_ARMADILLO/BETA-CATENIN_REPEAT_FAMILY_PROTEIN
	81
set	NOT_ASSIGNED_NO_ONTOLOGY_ARMADILLO/BETA-CATENIN_REPEAT_FAMILY_PROTEIN
setSize	31
pANOVA	0.0033
s.dist	0.305
p.adjustANOVA	0.0228

Top enriched genes

Top 20 genes
GeneID	Gene Rank
Fes1A	10705
AT4G16490	10282
AT5G47540	10046
AT5G50900	9897
AT1G61350	9608
AT3G20170	9261
ARIA	8625
AT4G33945	8257
AT4G32050	8039
AT2G45720	7634
ARO4	7121
AT5G18940	7069
AT4G31890	5923
AT3G01400	5676
AT1G08315	4533
AT2G25130	4527
AT1G01830	4391
AT5G37290	4281
AT4G12710	3345
TIO	2295

Click HERE to show all gene set members

All member genes
GeneID	Gene Rank
Fes1A	10705
AT4G16490	10282
AT5G47540	10046
AT5G50900	9897
AT1G61350	9608
AT3G20170	9261
ARIA	8625
AT4G33945	8257
AT4G32050	8039
AT2G45720	7634
ARO4	7121
AT5G18940	7069
AT4G31890	5923
AT3G01400	5676
AT1G08315	4533
AT2G25130	4527
AT1G01830	4391
AT5G37290	4281
AT4G12710	3345
TIO	2295
AT3G03440	1901
AT1G23180	-469
AT1G51350	-1505
Fes1B	-1780
ARO3	-1948
ABAP1	-2309
AT3G62530	-2960
ARO2	-3085
AT2G05810	-4639
AT4G31520	-5364
AT5G58680	-7287

SIGNALLING_RECEPTOR_KINASES_WHEAT_LRK10_LIKE

SIGNALLING_RECEPTOR_KINASES_WHEAT_LRK10_LIKE
	231
set	SIGNALLING_RECEPTOR_KINASES_WHEAT_LRK10_LIKE
setSize	12
pANOVA	0.069
s.dist	-0.303
p.adjustANOVA	0.197

Top enriched genes

Top 20 genes
GeneID	Gene Rank
LRK10L-1.1	-8835
LRK10L-2.7	-7468
LRK10L-2.1	-5640
LRK10L-2.5	-5222
AT5G38210	-4934
LRK10L-2.8	-4387
LRK10L-1.5	-4363
AT1G18390	-3666
LRK10L-2.4	-487
LRK10L-2.3	652
AT1G66880	5563
AT5G38240	7180

Click HERE to show all gene set members

All member genes
GeneID	Gene Rank
LRK10L-1.1	-8835
LRK10L-2.7	-7468
LRK10L-2.1	-5640
LRK10L-2.5	-5222
AT5G38210	-4934
LRK10L-2.8	-4387
LRK10L-1.5	-4363
AT1G18390	-3666
LRK10L-2.4	-487
LRK10L-2.3	652
AT1G66880	5563
AT5G38240	7180

RNA_REGULATION_OF_TRANSCRIPTION_TRIHELIX,_TRIPLE-HELIX_TRANSCRIPTION_FACTOR_FAMILY

RNA_REGULATION_OF_TRANSCRIPTION_TRIHELIX,_TRIPLE-HELIX_TRANSCRIPTION_FACTOR_FAMILY
	192
set	RNA_REGULATION_OF_TRANSCRIPTION_TRIHELIX,_TRIPLE-HELIX_TRANSCRIPTION_FACTOR_FAMILY
setSize	30
pANOVA	0.00467
s.dist	-0.298
p.adjustANOVA	0.0307

Top enriched genes

Top 20 genes
GeneID	Gene Rank
AT4G31270	-9129
AT-GTL1	-8801
GT-4	-8652
AT1G11850	-8479
AT1G76880	-8403
UGLYAH	-8250
GT-1	-7589
PTL	-7547
ASIL2	-6521
AT3G24860	-6516
AT2G35640	-6404
GT-2	-5835
AT3G01560	-4935
GT-3B	-4596
AT2G44730	-4396
AT5G28300	-4070
EDA31	-3765
AT5G14540	-2973
AT1G31310	-1030
AT3G58630	-285

Click HERE to show all gene set members

All member genes
GeneID	Gene Rank
AT4G31270	-9129
AT-GTL1	-8801
GT-4	-8652
AT1G11850	-8479
AT1G76880	-8403
UGLYAH	-8250
GT-1	-7589
PTL	-7547
ASIL2	-6521
AT3G24860	-6516
AT2G35640	-6404
GT-2	-5835
AT3G01560	-4935
GT-3B	-4596
AT2G44730	-4396
AT5G28300	-4070
EDA31	-3765
AT5G14540	-2973
AT1G31310	-1030
AT3G58630	-285
AT3G10040	970
AT1G21200	1523
AT5G47660	2379
AT5G05550	3311
GT-3A	4223
AT4G29030	4242
AT3G11100	4291
AT3G24490	5631
ASIL1	6215
AT3G54390	7915

PROTEIN_SYNTHESIS_RIBOSOME_BIOGENESIS

PROTEIN_SYNTHESIS_RIBOSOME_BIOGENESIS
	126
set	PROTEIN_SYNTHESIS_RIBOSOME_BIOGENESIS
setSize	11
pANOVA	0.0867
s.dist	0.298
p.adjustANOVA	0.219

Top enriched genes

Top 20 genes
GeneID	Gene Rank
AT4G15770	9702
NUG2	8254
ATPK1	7880
AT3G22980	6610
MDN1	6475
AT1G42440	5061
ATPK2	4092
AT5G53920	148
AT5G38290	-1613
CRS2B	-1928
AT3G53470	-5635

Click HERE to show all gene set members

All member genes
GeneID	Gene Rank
AT4G15770	9702
NUG2	8254
ATPK1	7880
AT3G22980	6610
MDN1	6475
AT1G42440	5061
ATPK2	4092
AT5G53920	148
AT5G38290	-1613
CRS2B	-1928
AT3G53470	-5635

SIGNALLING_RECEPTOR_KINASES_WALL_ASSOCIATED_KINASE

SIGNALLING_RECEPTOR_KINASES_WALL_ASSOCIATED_KINASE
	230
set	SIGNALLING_RECEPTOR_KINASES_WALL_ASSOCIATED_KINASE
setSize	22
pANOVA	0.0157
s.dist	-0.298
p.adjustANOVA	0.0761

Top enriched genes

Top 20 genes
GeneID	Gene Rank
WAK4	-9665
WAKL10	-9591
WAKL13	-9477
WAKL6	-9019
WAKL21	-8980
WAKL2	-6609
WAK5	-6342
WAKL15	-5551
WAKL5	-5274
WAK2	-5134
WAKL11	-3658
WAKL1	-1188
WAKL22	-533
WAKL18	-480
WAKL8	-27
WAKL17	1198
WAKL14	1782
WAKL4	2753
WAK3	3219
WAKL20	3820

Click HERE to show all gene set members

All member genes
GeneID	Gene Rank
WAK4	-9665
WAKL10	-9591
WAKL13	-9477
WAKL6	-9019
WAKL21	-8980
WAKL2	-6609
WAK5	-6342
WAKL15	-5551
WAKL5	-5274
WAK2	-5134
WAKL11	-3658
WAKL1	-1188
WAKL22	-533
WAKL18	-480
WAKL8	-27
WAKL17	1198
WAKL14	1782
WAKL4	2753
WAK3	3219
WAKL20	3820
WAKL9	4755
WAK1	7337

TRANSPORT_NUCLEOTIDES

TRANSPORT_NUCLEOTIDES
	255
set	TRANSPORT_NUCLEOTIDES
setSize	18
pANOVA	0.03
s.dist	-0.296
p.adjustANOVA	0.121

Top enriched genes

Top 20 genes
GeneID	Gene Rank
PUP1	-9333
PUP7	-8950
PUP13	-7675
AT3G23870	-6647
PUP14	-6579
PUP23	-4898
AT1G34470	-4213
ATUPS3	-3591
PUP18	-3497
ATPUP5	-3174
PUP21	-2554
PUP2	-2103
PUP10	-841
PUP4	619
ATPUP12	908
PUP17	3113
NCS1	5939
PUP11	7498

Click HERE to show all gene set members

All member genes
GeneID	Gene Rank
PUP1	-9333
PUP7	-8950
PUP13	-7675
AT3G23870	-6647
PUP14	-6579
PUP23	-4898
AT1G34470	-4213
ATUPS3	-3591
PUP18	-3497
ATPUP5	-3174
PUP21	-2554
PUP2	-2103
PUP10	-841
PUP4	619
ATPUP12	908
PUP17	3113
NCS1	5939
PUP11	7498

LIPID_METABOLISM_LIPID_DEGRADATION_LIPASES_TRIACYLGLYCEROL_LIPASE

LIPID_METABOLISM_LIPID_DEGRADATION_LIPASES_TRIACYLGLYCEROL_LIPASE
	45
set	LIPID_METABOLISM_LIPID_DEGRADATION_LIPASES_TRIACYLGLYCEROL_LIPASE
setSize	26
pANOVA	0.0091
s.dist	0.295
p.adjustANOVA	0.0501

Top enriched genes

Top 20 genes
GeneID	Gene Rank
AT2G30550	9718
AT4G18550	9537
AT5G42930	8977
PLIP3	8709
AT3G14075	8310
AT1G56630	7690
AT3G14360	7589
PLIP1	7563
AT1G18460	7260
PLA-I{gamma}1	5940
AT1G51440	5683
LIP1	5573
PLIP2	5525
AT4G10955	4701
ATTLL1	4616
AT5G67050	4532
AT2G42450	4209
AT5G24220	1425
AT5G24210	1071
AT4G13550	-693

Click HERE to show all gene set members

All member genes
GeneID	Gene Rank
AT2G30550	9718
AT4G18550	9537
AT5G42930	8977
PLIP3	8709
AT3G14075	8310
AT1G56630	7690
AT3G14360	7589
PLIP1	7563
AT1G18460	7260
PLA-I{gamma}1	5940
AT1G51440	5683
LIP1	5573
PLIP2	5525
AT4G10955	4701
ATTLL1	4616
AT5G67050	4532
AT2G42450	4209
AT5G24220	1425
AT5G24210	1071
AT4G13550	-693
AT2G05260	-1680
AT4G16070	-1688
AT3G07400	-1940
AT1G05790	-3610
LIP2	-8252
AT1G30370	-9269

NOT_ASSIGNED_NO_ONTOLOGY_PENTATRICOPEPTIDE_(PPR)_REPEAT-CONTAINING_PROTEIN

NOT_ASSIGNED_NO_ONTOLOGY_PENTATRICOPEPTIDE_(PPR)_REPEAT-CONTAINING_PROTEIN
	88
set	NOT_ASSIGNED_NO_ONTOLOGY_PENTATRICOPEPTIDE_(PPR)_REPEAT-CONTAINING_PROTEIN
setSize	424
pANOVA	5.22e-25
s.dist	0.292
p.adjustANOVA	6.87e-23

Top enriched genes

Top 20 genes
GeneID	Gene Rank
PCMP-H90	10156
AT3G02650	10092
AtHip1	10035
PCMP-E42	10017
AT2G30780	10005
PNM1	9980
AT1G30290	9844
AT5G15980	9791
AT4G14190	9764
Phox2	9726
AT2G17670	9716
AT5G15280	9700
AT1G64580	9690
AT3G18020	9610
AT1G01970	9518
AT1G07740	9401
AT5G65820	9373
PCMP-H34	9340
AT2G37230	9302
AT2G18520	9277

Click HERE to show all gene set members

All member genes
GeneID	Gene Rank
PCMP-H90	10156
AT3G02650	10092
AtHip1	10035
PCMP-E42	10017
AT2G30780	10005
PNM1	9980
AT1G30290	9844
AT5G15980	9791
AT4G14190	9764
Phox2	9726
AT2G17670	9716
AT5G15280	9700
AT1G64580	9690
AT3G18020	9610
AT1G01970	9518
AT1G07740	9401
AT5G65820	9373
PCMP-H34	9340
AT2G37230	9302
AT2G18520	9277
NFD5	9222
AT4G17616	9208
PPR336	9103
PCMP-H58	9073
EMB1796	9063
AT3G46870	9040
PCMP-E66	8913
PCMP-H89	8848
AT5G65560	8818
AT5G38730	8803
PCMP-H64	8778
AT5G57250	8714
PCMP-E79	8656
PCMP-E10	8649
AT1G80550	8624
AT3G42630	8613
PCMP-H67	8548
AT3G54980	8467
PCMP-H44	8462
PCMP-H76	8454
PCMP-H83	8433
AT4G20740	8400
EMB2076	8358
PCMP-E12	8351
AT1G55890	8344
DYW7	8276
AT1G11630	8264
EOL2	8228
PCMP-E41	8149
EOL1	8108
AT3G61520	8103
PCMP-H6	8094
PCMP-E100	8088
AT3G02490	8084
AT5G18950	8061
PCMP-E52	8027
PCMP-E14	7977
AT1G69290	7953
AT3G04760	7908
PCMP-E78	7851
AT3G22470	7815
PCMP-H69	7814
P67	7779
AT4G21170	7776
AT3G48250	7760
AT2G01740	7732
PCMP-H52	7731
AT1G06270	7704
AT3G13160	7671
AT5G39980	7668
AT2G17033	7656
AT1G71210	7620
AT3G16010	7527
AT3G06920	7523
AT1G13800	7513
PCMP-H33	7487
AT5G12100	7485
AT1G09900	7463
AT4G30825	7428
PCMP-H23	7412
AT5G01110	7400
AT2G06000	7392
AT1G18900	7386
AT3G53170	7385
AT5G47360	7357
PCMP-A5	7310
PCMP-E45	7253
PCMP-E73	7216
AT1G22960	7215
AT5G46100	7211
PCMP-H38	7184
AT2G40240	7176
AT1G08610	7158
PCMP-E38	7141
PCMP-H86	7118
PCMP-E56	7098
PCMP-E91	7096
AT5G55840	7079
AT2G28050	7005
AT4G36680	6987
AT2G17140	6981
AT5G24830	6953
LPA1	6936
TL20.3	6913
PCMP-E98	6901
DOT4	6818
PCMP-H42	6792
PCMP-H65	6756
AT4G19890	6737
PCMP-H63	6712
AT3G07290	6664
AT4G35850	6643
AT5G64320	6603
AT5G18390	6590
PCMP-E28	6558
AT1G23450	6519
AT1G13410	6502
PCMP-E84	6495
PCMP-E29	6407
AT2G27800	6404
CRR21	6400
PCMP-E87	6376
AT3G04130	6371
AT1G11710	6358
AT1G55630	6300
AT3G46610	6296
AT1G52640	6266
PCMP-E63	6249
AT1G66345	6221
AT5G15010	6201
PCMP-H49	6198
PCMP-E16	6152
CRR2	6085
AT3G15200	6079
AT3G60050	6071
AT1G73710	6029
PCMP-H73	6018
AT5G48730	6012
AT3G22670	5994
EMB2758	5993
AT1G63230	5971
PCMP-E76	5930
AT1G16830	5917
AT3G16710	5907
AT5G43820	5875
LOJ	5863
PCMP-H18	5850
PCMP-E90	5809
PCMP-E17	5792
OTP43	5773
AT1G73400	5765
AT5G13770	5704
AT5G46680	5698
EMB976	5694
PCMP-H31	5678
AT1G74630	5664
AT2G19280	5663
AT1G11900	5614
AT1G62680	5565
AT2G15630	5556
PCMP-H32	5544
PCMP-H59	5528
PCMP-E82	5460
AT5G61990	5402
PCMP-E105	5382
PCMP-H70	5344
AT4G28010	5308
PCMP-E70	5269
PCMP-E61	5256
AT3G49730	5216
AT1G20300	5177
AT1G52620	5122
PCMP-E71	5118
AT1G03100	5059
EMB1006	5051
PCMP-E54	5016
PCMP-E47	5009
PCMP-E92	4994
PCMP-H40	4969
AT5G16420	4924
AT2G38420	4921
AT1G64100	4901
AT5G61400	4831
PCMP-E44	4772
CBSPPR1	4763
MRL1	4673
AT5G41170	4671
PCMP-E99	4636
PCMP-H1	4582
PCMP-H12	4500
PCMP-E72	4482
PCMP-A3	4461
AT1G62930	4460
AT5G11310	4451
AT3G14580	4401
AT3G22690	4385
AT4G01400	4383
PCMP-A6	4377
PCMP-E27	4360
PCMP-E53	4345
AT3G61170	4295
PCMP-E5	4285
PCMP-H84	4270
AT1G62590	4246
PCMP-H37	4196
PCMP-H61	4194
AT1G16480	4188
AT5G14080	4159
PCMP-E35	4146
PCMP-E77	4060
PCMP-H17	4054
PCMP-E26	4053
PCMP-E13	4050
PCMP-H51	4031
PCMP-E64	4007
AT4G11690	4004
PCMP-H21	3947
AT5G66631	3941
AT1G31840	3916
PCMP-E37	3908
PCMP-H22	3808
AT3G56030	3804
EMB175	3785
PCMP-E23	3761
PCMP-E21	3726
PCMP-E25	3710
AT2G32630	3709
AT3G51320	3679
AT5G18475	3639
AT2G18940	3630
ETO1	3591
PCMP-H87	3575
AT3G59040	3571
PCMP-E50	3559
AT5G28460	3460
AT4G04790	3436
PCMP-E103	3418
AT5G28340	3414
PCMP-E24	3349
PCMP-E67	3348
AT1G05600	3319
AT5G61370	3287
PCMP-E86	3276
PCMP-H11	3248
PCMP-E69	3216
PCMP-E101	3198
AT2G33680	3186
PCMP-E55	3179
AT4G19440	3164
AT4G21880	3065
PCMP-H43	3033
PCMP-E49	2996
AT5G37130	2984
RPF2	2868
AT5G59900	2843
PCMP-E36	2792
AT5G40400	2773
AT1G53330	2758
AT1G12300	2697
PCMP-H57	2651
AT5G02830	2620
PCMP-H3	2483
PCMP-E30	2472
AT3G62540	2471
AT1G26500	2464
AT2G26790	2451
PCMP-E33	2432
EMB1025	2411
AT1G09820	2344
AT2G36240	2292
AT1G03560	2264
AT3G09060	2236
AT1G77360	2214
PCMP-H36	2093
PCMP-H82	2038
PCMP-E80	2030
AT1G06710	2001
AT3G23020	1980
AT1G61690	1876
PCMP-H60	1856
PCMP-H26	1848
PCMP-E2	1827
PCMP-H27	1822
PPR40	1786
AT1G79080	1714
AT2G02150	1704
PGR3	1698
PCMP-E15	1690
EMB2261	1685
PCMP-A4	1599
AT1G06580	1594
AT1G63080	1502
PCMP-H88	1474
AT1G76280	1456
PCMP-E31	1452
PCMP-E89	1435
PCMP-H13	1430
AT4G38150	1403
AT1G02420	1399
AT3G62470	1392
PCMP-H75	1389
PCMP-E20	1284
PCMP-H5	1278
AT1G19290	1272
AT5G06400	1138
AT1G74580	1109
LOI1	1095
PCMP-H28	1067
PCMP-E4	1059
AT3G13150	1049
PCMP-E7	994
PCMP-E22	981
PCMP-E1	930
AT1G80150	873
DYW9	798
AT2G35130	736
AT3G58590	723
AT1G80880	464
AT3G48810	448
PCMP-H24	427
AT5G08310	407
ELI1	397
PCMP-E48	371
PCMP-H29	345
PCMP-E32	316
AT5G14770	304
PCMP-H68	299
EMB975	246
AT2G44880	228
PRORP1	30
PCMP-H85	27
PCMP-E83	-50
AT1G26460	-172
PDE247	-185
AT5G16640	-301
PCMP-E65	-382
AT2G16880	-425
PCMP-E94	-440
PCMP-H35	-515
AT5G62370	-599
AT1G79540	-633
PCMP-H66	-640
PCMP-H8	-690
OTP51	-707
PCMP-H81	-741
AT1G63400	-766
PPR4	-817
PCMP-H41	-929
PCMP-E68	-1057
PCMP-E34	-1059
PCMP-E40	-1087
AT1G13630	-1091
PCMP-E96	-1096
PCMP-H79	-1118
EMB2453	-1129
PCMP-E8	-1166
AT3G61360	-1182
AT1G77405	-1222
PCMP-E51	-1282
PCMP-H92	-1311
PCMP-A2	-1447
AT4G26800	-1454
PCMP-E95	-1541
CRP1	-1573
PCMP-E58	-1575
AT1G63630	-1619
AT3G09040	-1633
AT1G62720	-1669
AT1G12620	-1675
AT4G18975	-1747
PCMP-E102	-1754
AT1G71060	-1888
AT1G62914	-2006
PCMP-E46	-2023
PCMP-E43	-2027
PCMP-E57	-2119
AT2G01390	-2156
AT4G01570	-2166
PCMP-E85	-2301
PCMP-E3	-2416
AT1G10910	-2432
AT5G27300	-2505
PCMP-H80	-2536
PCMP-E74	-2686
PCMP-H91	-2690
PCMP-E75	-2735
MEE40	-2784
AT5G28380	-2856
PCMP-H15	-2910
AT1G62350	-2917
AT1G63070	-2931
AT5G14820	-3148
AT1G04590	-3175
AT1G02060	-3180
AT4G26680	-3290
PCMP-H53	-3347
AT3G25210	-3385
PCMP-H47	-3529
PCMP-E93	-3566
AT1G63150	-3614
DYW10	-3695
AT2G17525	-3842
AT2G15980	-3962
AT3G60980	-4181
GUN1	-4383
AT5G25630	-4476
AT1G63330	-4575
AT1G09680	-4957
AT2G20720	-4961
DG1	-5028
EMB2745	-5058
AT1G63320	-5371
AT1G68980	-5727
GRP23	-5780
AT5G02860	-5874
PCMP-E6	-6614
AT1G13040	-6881
AT1G63130	-6986
EMB1417	-7217
PCMP-A1	-7349
AT2G48000	-7851
EMB2744	-7890
ABO5	-7944
AT3G49140	-8217

RNA_REGULATION_OF_TRANSCRIPTION_C2H2_ZINC_FINGER_FAMILY

RNA_REGULATION_OF_TRANSCRIPTION_C2H2_ZINC_FINGER_FAMILY
	166
set	RNA_REGULATION_OF_TRANSCRIPTION_C2H2_ZINC_FINGER_FAMILY
setSize	100
pANOVA	6.49e-07
s.dist	-0.288
p.adjustANOVA	3.41e-05

Top enriched genes

Top 20 genes
GeneID	Gene Rank
WIP2	-9727
ZFP8	-9725
JKD	-9700
AT3G49930	-9658
BIB	-9647
ZFP1	-9618
SRS2	-9593
AT3G53820	-9511
SUF4	-9346
AtIDD16	-9245
IDD5	-9206
NUC	-9200
AT5G14140	-9102
IDD4	-9063
AT5G60470	-9003
AT3G53600	-8900
AtIDD11	-8872
STOP2	-8862
IDD14	-8817
MGP	-8777

Click HERE to show all gene set members

All member genes
GeneID	Gene Rank
WIP2	-9727
ZFP8	-9725
JKD	-9700
AT3G49930	-9658
BIB	-9647
ZFP1	-9618
SRS2	-9593
AT3G53820	-9511
SUF4	-9346
AtIDD16	-9245
IDD5	-9206
NUC	-9200
AT5G14140	-9102
IDD4	-9063
AT5G60470	-9003
AT3G53600	-8900
AtIDD11	-8872
STOP2	-8862
IDD14	-8817
MGP	-8777
GAF1	-8763
ZFP3	-8703
AT5G10970	-8696
AT1G14580	-8338
SGR5	-8159
TAC1	-8151
SRS5	-8048
ZFP4	-7647
ZFP7	-7416
AT5G40710	-7312
IDD7	-6964
AT5G18550	-6677
ZFP5	-6523
AT4G16610	-6212
ZAT9	-5920
AT1G26590	-5448
AT4G25610	-5427
AT4G17810	-5323
ZAT4	-5279
AT5G43540	-5252
ZAT7	-5095
SEU	-4733
GIS3	-4515
AZF3	-4261
CAR9	-3937
AT1G04990	-3609
ZAT1	-3543
AT1G49900	-3449
ZFP10	-3204
ENY	-2926
AT4G27240	-2837
STOP1	-2524
AT5G52010	-2363
AT5G04390	-2106
ZAT5	-1845
GIS	-1634
MBS1	-1587
ZAT8	-1576
AT3G42860	-1278
ZAT11	-1274
WIP3	-1245
SRS1	-1083
ZAT10	-992
ZAT12	-732
ZFN3	-577
AT1G26610	-431
AGD13	-284
SAP12	-137
AT1G04445	362
SRS8	388
AZF2	413
AT2G28710	557
AT5G20220	742
AT1G11490	912
AT5G56200	937
AT5G03510	1068
AT3G10470	2153
MBS2	2416
AT5G22480	2635
AT4G12240	2955
AT2G29660	3126
ZFP6	3473
AGD11	3809
TFIIIA	3926
SAP6	4145
AT5G13920	4634
AT5G36240	4676
SUVR5	5900
AT2G19385	6006
ZAT6	6020
AZF1	6415
AT4G31420	6935
ZFN2	7033
SE	7457
AGD12	7669
AT1G75710	8066
AT3G14740	9074
ORTH1	9259
REIL2	9800
BTS	10178

RNA_REGULATION_OF_TRANSCRIPTION_TCP_TRANSCRIPTION_FACTOR_FAMILY

RNA_REGULATION_OF_TRANSCRIPTION_TCP_TRANSCRIPTION_FACTOR_FAMILY
	191
set	RNA_REGULATION_OF_TRANSCRIPTION_TCP_TRANSCRIPTION_FACTOR_FAMILY
setSize	16
pANOVA	0.0471
s.dist	-0.287
p.adjustANOVA	0.161

Top enriched genes

Top 20 genes
GeneID	Gene Rank
TCP2	-9478
TCP24	-9123
TCP15	-8715
TCP4	-8431
TCP22	-7678
TCP17	-6804
TCP10	-4906
TCP5	-4016
TCP23	-152
TCP9	843
TCP13	1383
TCP19	1970
TCP7	2317
BRC2	2751
TCP8	5263
TCP20	5345

Click HERE to show all gene set members

All member genes
GeneID	Gene Rank
TCP2	-9478
TCP24	-9123
TCP15	-8715
TCP4	-8431
TCP22	-7678
TCP17	-6804
TCP10	-4906
TCP5	-4016
TCP23	-152
TCP9	843
TCP13	1383
TCP19	1970
TCP7	2317
BRC2	2751
TCP8	5263
TCP20	5345

NOT_ASSIGNED_NO_ONTOLOGY_AGENET_DOMAIN-CONTAINING_PROTEIN

NOT_ASSIGNED_NO_ONTOLOGY_AGENET_DOMAIN-CONTAINING_PROTEIN
	80
set	NOT_ASSIGNED_NO_ONTOLOGY_AGENET_DOMAIN-CONTAINING_PROTEIN
setSize	16
pANOVA	0.0478
s.dist	-0.286
p.adjustANOVA	0.161

Top enriched genes

Top 20 genes
GeneID	Gene Rank
DUF1	-8847
AT5G20030	-7873
DUF6	-7798
ATDUF10	-6542
DUF8	-6021
DUF9	-4882
DUF3	-4152
DUF7	-2998
DUF2	-2205
AT4G32440	-1391
AT2G25590	-951
AT5G52070	479
ATG2484-1	1250
AT1G09320	1954
AT5G42670	5006
AT3G06520	5693

Click HERE to show all gene set members

All member genes
GeneID	Gene Rank
DUF1	-8847
AT5G20030	-7873
DUF6	-7798
ATDUF10	-6542
DUF8	-6021
DUF9	-4882
DUF3	-4152
DUF7	-2998
DUF2	-2205
AT4G32440	-1391
AT2G25590	-951
AT5G52070	479
ATG2484-1	1250
AT1G09320	1954
AT5G42670	5006
AT3G06520	5693

MISC_GLUCO-,_GALACTO-_AND_MANNOSIDASES_BETA-GALACTOSIDASE

MISC_GLUCO-,_GALACTO-_AND_MANNOSIDASES_BETA-GALACTOSIDASE
	60
set	MISC_GLUCO-,_GALACTO-_AND_MANNOSIDASES_BETA-GALACTOSIDASE
setSize	13
pANOVA	0.0772
s.dist	-0.283
p.adjustANOVA	0.207

Top enriched genes

Top 20 genes
GeneID	Gene Rank
BGAL17	-8707
BGAL14	-7599
BGAL6	-7352
BGAL10	-6345
BGAL16	-5415
BGAL2	-5187
BGAL4	-3706
BGAL12	-3621
BGAL1	-2117
BGAL5	75
BGAL3	5083
BGAL8	5978
BGAL9	7361

Click HERE to show all gene set members

All member genes
GeneID	Gene Rank
BGAL17	-8707
BGAL14	-7599
BGAL6	-7352
BGAL10	-6345
BGAL16	-5415
BGAL2	-5187
BGAL4	-3706
BGAL12	-3621
BGAL1	-2117
BGAL5	75
BGAL3	5083
BGAL8	5978
BGAL9	7361

REDOX_ASCORBATE_AND_GLUTATHIONE_ASCORBATE

REDOX_ASCORBATE_AND_GLUTATHIONE_ASCORBATE
	144
set	REDOX_ASCORBATE_AND_GLUTATHIONE_ASCORBATE
setSize	16
pANOVA	0.0557
s.dist	0.276
p.adjustANOVA	0.177

Top enriched genes

Top 20 genes
GeneID	Gene Rank
MDAR3	10503
APX1	10090
DHAR1	9958
DHAR2	7885
MDAR2	7836
MDAR5	7477
AT5G21105	6671
MDAR4	6329
APXT	6038
AT5G21100	622
DHAR3	-430
APX3	-1718
APX5	-2745
APXS	-3976
AT4G39830	-4976
APX4	-6398

Click HERE to show all gene set members

All member genes
GeneID	Gene Rank
MDAR3	10503
APX1	10090
DHAR1	9958
DHAR2	7885
MDAR2	7836
MDAR5	7477
AT5G21105	6671
MDAR4	6329
APXT	6038
AT5G21100	622
DHAR3	-430
APX3	-1718
APX5	-2745
APXS	-3976
AT4G39830	-4976
APX4	-6398

RNA_REGULATION_OF_TRANSCRIPTION_C2C2(ZN)_DOF_ZINC_FINGER_FAMILY

RNA_REGULATION_OF_TRANSCRIPTION_C2C2(ZN)_DOF_ZINC_FINGER_FAMILY
	164
set	RNA_REGULATION_OF_TRANSCRIPTION_C2C2(ZN)_DOF_ZINC_FINGER_FAMILY
setSize	31
pANOVA	0.00914
s.dist	-0.271
p.adjustANOVA	0.0501

Top enriched genes

Top 20 genes
GeneID	Gene Rank
DAG1	-9603
DOF2.5	-8893
AT1G28310	-8879
DOF5.3	-8810
DOF2.2	-8786
DOF3.1	-7593
DOF2.4	-7579
DOF5.7	-7578
DOF4.6	-7497
DOF1.6	-6849
MEE47	-6245
OBP3	-5863
DOF4.1	-5067
OBP2	-4540
DOF2.1	-4519
DOF3.2	-3361
DOF5.1	-1759
CDF5	-800
DOF5.6	-117
DOF1.7	118

Click HERE to show all gene set members

All member genes
GeneID	Gene Rank
DAG1	-9603
DOF2.5	-8893
AT1G28310	-8879
DOF5.3	-8810
DOF2.2	-8786
DOF3.1	-7593
DOF2.4	-7579
DOF5.7	-7578
DOF4.6	-7497
DOF1.6	-6849
MEE47	-6245
OBP3	-5863
DOF4.1	-5067
OBP2	-4540
DOF2.1	-4519
DOF3.2	-3361
DOF5.1	-1759
CDF5	-800
DOF5.6	-117
DOF1.7	118
CDF3	1552
AT1G26790	1769
DOF1.5	2126
DOF4.7	2328
DOF1.8	2942
DOF3.4	3251
CDF1	3664
DOF5.4	3794
DOF1.2	5266
CDF2	6074
CDF4	10288

Here is the session info with all the versions of packages used.

sessionInfo()

## R version 4.0.3 (2020-10-10)
## Platform: x86_64-pc-linux-gnu (64-bit)
## Running under: Ubuntu 18.04.5 LTS
## 
## Matrix products: default
## BLAS:   /usr/lib/x86_64-linux-gnu/blas/libblas.so.3.7.1
## LAPACK: /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3.7.1
## 
## locale:
##  [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C              
##  [3] LC_TIME=en_US.UTF-8        LC_COLLATE=en_US.UTF-8    
##  [5] LC_MONETARY=en_US.UTF-8    LC_MESSAGES=en_US.UTF-8   
##  [7] LC_PAPER=en_US.UTF-8       LC_NAME=C                 
##  [9] LC_ADDRESS=C               LC_TELEPHONE=C            
## [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C       
## 
## attached base packages:
## [1] parallel  stats4    stats     graphics  grDevices utils     datasets 
## [8] methods   base     
## 
## other attached packages:
##  [1] pkgload_1.1.0               GGally_2.0.0               
##  [3] ggplot2_3.3.2               reshape2_1.4.4             
##  [5] beeswarm_0.2.3              gtools_3.8.2               
##  [7] tibble_3.0.4                dplyr_1.0.2                
##  [9] echarts4r_0.3.3             mitch_1.2.0                
## [11] DESeq2_1.30.0               SummarizedExperiment_1.20.0
## [13] Biobase_2.50.0              MatrixGenerics_1.2.0       
## [15] matrixStats_0.57.0          GenomicRanges_1.42.0       
## [17] GenomeInfoDb_1.26.0         IRanges_2.24.0             
## [19] S4Vectors_0.28.0            BiocGenerics_0.36.0        
## [21] gplots_3.1.0                getDEE2_1.0.0              
## 
## loaded via a namespace (and not attached):
##  [1] bitops_1.0-6           bit64_4.0.5            RColorBrewer_1.1-2    
##  [4] httr_1.4.2             rprojroot_1.3-2        backports_1.2.0       
##  [7] tools_4.0.3            R6_2.5.0               KernSmooth_2.23-18    
## [10] DBI_1.1.0              colorspace_1.4-1       withr_2.3.0           
## [13] htm2txt_2.1.1          tidyselect_1.1.0       gridExtra_2.3         
## [16] bit_4.0.4              compiler_4.0.3         desc_1.2.0            
## [19] DelayedArray_0.16.0    caTools_1.18.0         scales_1.1.1          
## [22] genefilter_1.72.0      stringr_1.4.0          digest_0.6.27         
## [25] rmarkdown_2.5          XVector_0.30.0         pkgconfig_2.0.3       
## [28] htmltools_0.5.0        highr_0.8              fastmap_1.0.1         
## [31] htmlwidgets_1.5.2      rlang_0.4.8            RSQLite_2.2.1         
## [34] shiny_1.5.0            generics_0.1.0         jsonlite_1.7.1        
## [37] BiocParallel_1.24.0    RCurl_1.98-1.2         magrittr_1.5          
## [40] GenomeInfoDbData_1.2.4 Matrix_1.2-18          Rcpp_1.0.5            
## [43] munsell_0.5.0          lifecycle_0.2.0        stringi_1.5.3         
## [46] yaml_2.2.1             MASS_7.3-53            zlibbioc_1.36.0       
## [49] plyr_1.8.6             grid_4.0.3             blob_1.2.1            
## [52] promises_1.1.1         crayon_1.3.4           lattice_0.20-41       
## [55] splines_4.0.3          annotate_1.68.0        locfit_1.5-9.4        
## [58] knitr_1.30             pillar_1.4.6           tcltk_4.0.3           
## [61] geneplotter_1.68.0     XML_3.99-0.5           glue_1.4.2            
## [64] evaluate_0.14          vctrs_0.3.4            httpuv_1.5.4          
## [67] testthat_3.0.0         gtable_0.3.0           purrr_0.3.4           
## [70] assertthat_0.2.1       reshape_0.8.8          xfun_0.19             
## [73] mime_0.9               xtable_1.8-4           later_1.1.0.1         
## [76] survival_3.2-7         pbmcapply_1.5.0        AnnotationDbi_1.52.0  
## [79] memoise_1.1.0          ellipsis_0.3.1

END of report

Mitch Report

Antony Kaspi & Mark Ziemann

Background

Input profiles

Input genesets

Differential pathway expression

Interactive enrichment scatterplot

Results table

Results (complete table)

Detailed Gene set reports