Mitch Report
Antony Kaspi & Mark Ziemann
date generated: 2020-11-05
Background
Mitch performs unidimensional and multidimensional gene set enrichment analysis. The concept behind this dates to work by Cox and Mann (https://doi.org/10.1186/1471-2105-13-S16-S12). This implementation is suited to R based workflows of multi-omics datasets. This software was developed by Antony Kaspi and Mark Ziemann. Learn more about Mitch at the website: https://github.com/markziemann/Mitch
Input profiles
Here is the first few lines of the input profile.
## x
## AT1G67148 -7.503210
## AT3G20380 -6.970349
## AT4G13420 -6.462433
## AT2G29380 6.303464
## AT5G47450 6.185181
## AT2G46390 -6.163559Here are some metrics about the input data profile:
| Profile metrics | |
|---|---|
| num_genesets | 211 |
| num_genes_in_profile | 20833 |
| duplicated_genes_present | 0 |
| num_profile_genes_in_sets | 983 |
| num_profile_genes_not_in_sets | 19850 |
Here is a plot of the input profiles. Note the dynamic ranges. 
Here is the contour plot of the profile including all detected genes.
Input genesets
Here are some metrics about the gene sets used: GMT file of genesets: plant_reactome.gmt
| Gene sets metrics | |
|---|---|
| num_genesets | 211 |
| num_genesets_excluded | 167 |
| num_genesets_included | 44 |
Differential pathway expression
Interactive enrichment scatterplot
Significance is calculated by -log10(p-value). All points shown are FDR<0.05.
Results table
Top N= 43 gene sets
| set | setSize | pANOVA | s.dist | p.adjustANOVA |
|---|---|---|---|---|
| R-ATH-1119533 TCA cycle (plant) | 25 | 7.75e-08 | 0.6210 | 3.33e-06 |
| R-ATH-6787011 Jasmonic acid signaling | 20 | 2.32e-05 | 0.5460 | 3.33e-04 |
| R-ATH-1119519 Calvin cycle | 28 | 8.23e-06 | 0.4870 | 1.77e-04 |
| R-ATH-1119486 IAA biosynthesis I | 21 | 1.66e-04 | 0.4750 | 1.79e-03 |
| R-ATH-1119624 Methionine salvage pathway | 10 | 1.67e-02 | 0.4370 | 7.09e-02 |
| R-ATH-1119419 Lysine biosynthesis VI | 13 | 9.24e-03 | 0.4170 | 4.42e-02 |
| R-ATH-1119273 Lysine biosynthesis I | 18 | 3.04e-03 | 0.4030 | 2.17e-02 |
| R-ATH-1119283 Lysine biosynthesis II | 18 | 3.04e-03 | 0.4030 | 2.17e-02 |
| R-ATH-1119452 Galactose degradation II | 17 | 8.49e-03 | 0.3690 | 4.42e-02 |
| R-ATH-1119430 Chorismate biosynthesis | 10 | 4.81e-02 | 0.3610 | 1.33e-01 |
| R-ATH-1119334 Ethylene biosynthesis from methionine | 10 | 5.00e-02 | 0.3580 | 1.33e-01 |
| R-ATH-1119312 Photorespiration | 25 | 3.54e-03 | 0.3370 | 2.17e-02 |
| R-ATH-1119460 Isoleucine biosynthesis from threonine | 11 | 5.88e-02 | 0.3290 | 1.33e-01 |
| R-ATH-5679411 Gibberellin signaling | 20 | 1.81e-02 | -0.3050 | 7.09e-02 |
| R-ATH-1119540 Leucine biosynthesis | 13 | 6.18e-02 | 0.2990 | 1.33e-01 |
| R-ATH-1119494 Tryptophan biosynthesis | 15 | 4.68e-02 | 0.2960 | 1.33e-01 |
| R-ATH-9618218 Arsenic uptake and detoxification | 19 | 3.13e-02 | 0.2850 | 1.12e-01 |
| R-ATH-1119620 GDP-L-fucose biosynthesis I (from GDP-D-mannose) | 17 | 4.60e-02 | 0.2800 | 1.33e-01 |
| R-ATH-1119465 Sucrose biosynthesis | 17 | 6.16e-02 | 0.2620 | 1.33e-01 |
| R-ATH-3899351 Abscisic acid (ABA) mediated signaling | 13 | 1.21e-01 | 0.2480 | 2.37e-01 |
| R-ATH-1119473 Cytokinins-O-glucoside biosynthesis | 25 | 5.82e-02 | 0.2190 | 1.33e-01 |
| R-ATH-9611432 Recognition of fungal and bacterial pathogens and immunity response | 14 | 1.63e-01 | 0.2150 | 3.05e-01 |
| R-ATH-1119428 GDP-D-rhamnose biosynthesis | 15 | 1.74e-01 | 0.2030 | 3.11e-01 |
| R-ATH-1119331 Cysteine biosynthesis I | 11 | 2.87e-01 | 0.1850 | 4.94e-01 |
| R-ATH-5608118 Auxin signalling | 29 | 8.90e-02 | 0.1820 | 1.82e-01 |
| R-ATH-1119438 Secologanin and strictosidine biosynthesis | 12 | 3.38e-01 | 0.1600 | 5.59e-01 |
| R-ATH-1119292 Cytokinins 7-N-glucoside biosynthesis | 10 | 4.60e-01 | 0.1350 | 6.52e-01 |
| R-ATH-1119375 Cytokinins 9-N-glucoside biosynthesis | 10 | 4.60e-01 | 0.1350 | 6.52e-01 |
| R-ATH-1119325 Sphingolipid metabolism | 13 | 4.70e-01 | 0.1160 | 6.52e-01 |
| R-ATH-8933811 Circadian rhythm | 17 | 4.24e-01 | 0.1120 | 6.52e-01 |
| R-ATH-9645850 Activation of pre-replication complex | 27 | 3.63e-01 | 0.1010 | 5.79e-01 |
| R-ATH-1119610 Biotin biosynthesis II | 10 | 6.33e-01 | 0.0873 | 7.85e-01 |
| R-ATH-1119479 Valine degradation | 12 | 6.06e-01 | -0.0861 | 7.85e-01 |
| R-ATH-9640760 G1 phase | 10 | 6.39e-01 | -0.0858 | 7.85e-01 |
| R-ATH-1119506 Tyrosine degradation I | 10 | 6.82e-01 | 0.0749 | 8.07e-01 |
| R-ATH-9609573 Tricin biosynthesis | 23 | 5.97e-01 | 0.0636 | 7.85e-01 |
| R-ATH-1119402 Phospholipid biosynthesis I | 16 | 6.95e-01 | -0.0567 | 8.07e-01 |
| R-ATH-6788019 Salicylic acid signaling | 17 | 7.76e-01 | 0.0399 | 8.70e-01 |
| R-ATH-1119477 Starch biosynthesis | 16 | 7.89e-01 | -0.0387 | 8.70e-01 |
| R-ATH-9608575 Reproductive meristem phase change | 11 | 8.31e-01 | -0.0371 | 8.93e-01 |
| R-ATH-5655101 Xyloglucan biosynthesis | 13 | 9.22e-01 | -0.0157 | 9.22e-01 |
| R-ATH-8879007 Response to cold temperature | 20 | 9.08e-01 | -0.0149 | 9.22e-01 |
| R-ATH-5632095 Brassinosteroid signaling | 46 | 9.21e-01 | 0.0085 | 9.22e-01 |
Results (complete table)
Click HERE to show results for all gene sets
| set | setSize | pANOVA | s.dist | p.adjustANOVA |
|---|---|---|---|---|
| R-ATH-1119533 TCA cycle (plant) | 25 | 7.75e-08 | 0.6210 | 3.33e-06 |
| R-ATH-6787011 Jasmonic acid signaling | 20 | 2.32e-05 | 0.5460 | 3.33e-04 |
| R-ATH-1119519 Calvin cycle | 28 | 8.23e-06 | 0.4870 | 1.77e-04 |
| R-ATH-1119486 IAA biosynthesis I | 21 | 1.66e-04 | 0.4750 | 1.79e-03 |
| R-ATH-1119624 Methionine salvage pathway | 10 | 1.67e-02 | 0.4370 | 7.09e-02 |
| R-ATH-1119419 Lysine biosynthesis VI | 13 | 9.24e-03 | 0.4170 | 4.42e-02 |
| R-ATH-1119273 Lysine biosynthesis I | 18 | 3.04e-03 | 0.4030 | 2.17e-02 |
| R-ATH-1119283 Lysine biosynthesis II | 18 | 3.04e-03 | 0.4030 | 2.17e-02 |
| R-ATH-1119452 Galactose degradation II | 17 | 8.49e-03 | 0.3690 | 4.42e-02 |
| R-ATH-1119430 Chorismate biosynthesis | 10 | 4.81e-02 | 0.3610 | 1.33e-01 |
| R-ATH-1119334 Ethylene biosynthesis from methionine | 10 | 5.00e-02 | 0.3580 | 1.33e-01 |
| R-ATH-1119312 Photorespiration | 25 | 3.54e-03 | 0.3370 | 2.17e-02 |
| R-ATH-1119460 Isoleucine biosynthesis from threonine | 11 | 5.88e-02 | 0.3290 | 1.33e-01 |
| R-ATH-5679411 Gibberellin signaling | 20 | 1.81e-02 | -0.3050 | 7.09e-02 |
| R-ATH-1119540 Leucine biosynthesis | 13 | 6.18e-02 | 0.2990 | 1.33e-01 |
| R-ATH-1119494 Tryptophan biosynthesis | 15 | 4.68e-02 | 0.2960 | 1.33e-01 |
| R-ATH-9618218 Arsenic uptake and detoxification | 19 | 3.13e-02 | 0.2850 | 1.12e-01 |
| R-ATH-1119620 GDP-L-fucose biosynthesis I (from GDP-D-mannose) | 17 | 4.60e-02 | 0.2800 | 1.33e-01 |
| R-ATH-1119465 Sucrose biosynthesis | 17 | 6.16e-02 | 0.2620 | 1.33e-01 |
| R-ATH-3899351 Abscisic acid (ABA) mediated signaling | 13 | 1.21e-01 | 0.2480 | 2.37e-01 |
| R-ATH-1119473 Cytokinins-O-glucoside biosynthesis | 25 | 5.82e-02 | 0.2190 | 1.33e-01 |
| R-ATH-9611432 Recognition of fungal and bacterial pathogens and immunity response | 14 | 1.63e-01 | 0.2150 | 3.05e-01 |
| R-ATH-1119428 GDP-D-rhamnose biosynthesis | 15 | 1.74e-01 | 0.2030 | 3.11e-01 |
| R-ATH-1119331 Cysteine biosynthesis I | 11 | 2.87e-01 | 0.1850 | 4.94e-01 |
| R-ATH-5608118 Auxin signalling | 29 | 8.90e-02 | 0.1820 | 1.82e-01 |
| R-ATH-1119438 Secologanin and strictosidine biosynthesis | 12 | 3.38e-01 | 0.1600 | 5.59e-01 |
| R-ATH-1119292 Cytokinins 7-N-glucoside biosynthesis | 10 | 4.60e-01 | 0.1350 | 6.52e-01 |
| R-ATH-1119375 Cytokinins 9-N-glucoside biosynthesis | 10 | 4.60e-01 | 0.1350 | 6.52e-01 |
| R-ATH-1119325 Sphingolipid metabolism | 13 | 4.70e-01 | 0.1160 | 6.52e-01 |
| R-ATH-8933811 Circadian rhythm | 17 | 4.24e-01 | 0.1120 | 6.52e-01 |
| R-ATH-9645850 Activation of pre-replication complex | 27 | 3.63e-01 | 0.1010 | 5.79e-01 |
| R-ATH-1119610 Biotin biosynthesis II | 10 | 6.33e-01 | 0.0873 | 7.85e-01 |
| R-ATH-1119479 Valine degradation | 12 | 6.06e-01 | -0.0861 | 7.85e-01 |
| R-ATH-9640760 G1 phase | 10 | 6.39e-01 | -0.0858 | 7.85e-01 |
| R-ATH-1119506 Tyrosine degradation I | 10 | 6.82e-01 | 0.0749 | 8.07e-01 |
| R-ATH-9609573 Tricin biosynthesis | 23 | 5.97e-01 | 0.0636 | 7.85e-01 |
| R-ATH-1119402 Phospholipid biosynthesis I | 16 | 6.95e-01 | -0.0567 | 8.07e-01 |
| R-ATH-6788019 Salicylic acid signaling | 17 | 7.76e-01 | 0.0399 | 8.70e-01 |
| R-ATH-1119477 Starch biosynthesis | 16 | 7.89e-01 | -0.0387 | 8.70e-01 |
| R-ATH-9608575 Reproductive meristem phase change | 11 | 8.31e-01 | -0.0371 | 8.93e-01 |
| R-ATH-5655101 Xyloglucan biosynthesis | 13 | 9.22e-01 | -0.0157 | 9.22e-01 |
| R-ATH-8879007 Response to cold temperature | 20 | 9.08e-01 | -0.0149 | 9.22e-01 |
| R-ATH-5632095 Brassinosteroid signaling | 46 | 9.21e-01 | 0.0085 | 9.22e-01 |
Detailed Gene set reports
R-ATH-1119533_TCA_cycle_(plant)
| 24 | |
|---|---|
| set | R-ATH-1119533_TCA_cycle_(plant) |
| setSize | 25 |
| pANOVA | 7.75e-08 |
| s.dist | 0.621 |
| p.adjustANOVA | 3.33e-06 |
Top enriched genes
| GeneID | Gene Rank |
|---|---|
| AT2G47510 | 10642 |
| AT5G50950 | 9771 |
| AT3G09810 | 9724 |
| AT5G55070 | 9701 |
| AT2G20420 | 9674 |
| AT5G40650 | 9481 |
| AT3G27380 | 9427 |
| AT2G44350 | 9402 |
| AT3G55410 | 8984 |
| AT4G35260 | 8976 |
| AT2G17130 | 8975 |
| AT5G66760 | 8235 |
| AT5G03290 | 8188 |
| AT5G08300 | 7304 |
| AT1G48030 | 6929 |
| AT4G00570 | 6921 |
| AT5G65750 | 6721 |
| AT4G26910 | 6547 |
| AT2G13560 | 6042 |
| AT2G18450 | 5801 |
Click HERE to show all gene set members
| GeneID | Gene Rank |
|---|---|
| AT2G47510 | 10642 |
| AT5G50950 | 9771 |
| AT3G09810 | 9724 |
| AT5G55070 | 9701 |
| AT2G20420 | 9674 |
| AT5G40650 | 9481 |
| AT3G27380 | 9427 |
| AT2G44350 | 9402 |
| AT3G55410 | 8984 |
| AT4G35260 | 8976 |
| AT2G17130 | 8975 |
| AT5G66760 | 8235 |
| AT5G03290 | 8188 |
| AT5G08300 | 7304 |
| AT1G48030 | 6929 |
| AT4G00570 | 6921 |
| AT5G65750 | 6721 |
| AT4G26910 | 6547 |
| AT2G13560 | 6042 |
| AT2G18450 | 5801 |
| AT1G53240 | 3658 |
| AT5G23250 | 3371 |
| AT3G17240 | 2058 |
| AT4G35830 | 1352 |
| AT3G15020 | -4113 |
R-ATH-6787011_Jasmonic_acid_signaling
| 34 | |
|---|---|
| set | R-ATH-6787011_Jasmonic_acid_signaling |
| setSize | 20 |
| pANOVA | 2.32e-05 |
| s.dist | 0.546 |
| p.adjustANOVA | 0.000333 |
Top enriched genes
| GeneID | Gene Rank |
|---|---|
| AT3G29575 | 10881 |
| AT1G69260 | 10549 |
| AT2G06050 | 10413 |
| AT2G46510 | 9824 |
| AT5G17490 | 9813 |
| AT5G27030 | 9769 |
| AT2G39940 | 8710 |
| AT4G17880 | 7822 |
| AT1G14920 | 7796 |
| AT1G32640 | 7647 |
| AT5G63110 | 7569 |
| AT2G01570 | 7553 |
| AT3G03450 | 7077 |
| AT2G46370 | 5633 |
| AT1G13740 | 5054 |
| AT1G66350 | 1747 |
| AT5G46760 | 509 |
| AT3G16830 | -463 |
| AT4G28910 | -1068 |
| AT4G38130 | -3220 |
Click HERE to show all gene set members
| GeneID | Gene Rank |
|---|---|
| AT3G29575 | 10881 |
| AT1G69260 | 10549 |
| AT2G06050 | 10413 |
| AT2G46510 | 9824 |
| AT5G17490 | 9813 |
| AT5G27030 | 9769 |
| AT2G39940 | 8710 |
| AT4G17880 | 7822 |
| AT1G14920 | 7796 |
| AT1G32640 | 7647 |
| AT5G63110 | 7569 |
| AT2G01570 | 7553 |
| AT3G03450 | 7077 |
| AT2G46370 | 5633 |
| AT1G13740 | 5054 |
| AT1G66350 | 1747 |
| AT5G46760 | 509 |
| AT3G16830 | -463 |
| AT4G28910 | -1068 |
| AT4G38130 | -3220 |
R-ATH-1119519_Calvin_cycle
| 23 | |
|---|---|
| set | R-ATH-1119519_Calvin_cycle |
| setSize | 28 |
| pANOVA | 8.23e-06 |
| s.dist | 0.487 |
| p.adjustANOVA | 0.000177 |
Top enriched genes
| GeneID | Gene Rank |
|---|---|
| AT3G52930 | 10683 |
| AT1G79550 | 10625 |
| AT2G01140 | 10556 |
| AT3G12780 | 10355 |
| AT3G04790 | 10319 |
| AT5G38420 | 10064 |
| AT3G60750 | 10008 |
| AT2G21170 | 9713 |
| AT1G18270 | 9044 |
| AT3G54050 | 9015 |
| AT1G56190 | 8857 |
| AT1G67090 | 8493 |
| AT3G55800 | 7702 |
| AT1G71100 | 7494 |
| AT2G45290 | 6841 |
| AT2G01290 | 6838 |
| AT3G01850 | 6806 |
| AT3G26650 | 6671 |
| AT1G63290 | 6082 |
| AT5G38410 | 4787 |
Click HERE to show all gene set members
| GeneID | Gene Rank |
|---|---|
| AT3G52930 | 10683 |
| AT1G79550 | 10625 |
| AT2G01140 | 10556 |
| AT3G12780 | 10355 |
| AT3G04790 | 10319 |
| AT5G38420 | 10064 |
| AT3G60750 | 10008 |
| AT2G21170 | 9713 |
| AT1G18270 | 9044 |
| AT3G54050 | 9015 |
| AT1G56190 | 8857 |
| AT1G67090 | 8493 |
| AT3G55800 | 7702 |
| AT1G71100 | 7494 |
| AT2G45290 | 6841 |
| AT2G01290 | 6838 |
| AT3G01850 | 6806 |
| AT3G26650 | 6671 |
| AT1G63290 | 6082 |
| AT5G38410 | 4787 |
| AT4G26520 | 2546 |
| AT5G61410 | 1325 |
| AT5G03690 | 1289 |
| AT5G44520 | 196 |
| AT5G64380 | -2302 |
| AT5G38430 | -5273 |
| AT2G36460 | -5332 |
| AT4G26530 | -7786 |
R-ATH-1119486_IAA_biosynthesis_I
| 20 | |
|---|---|
| set | R-ATH-1119486_IAA_biosynthesis_I |
| setSize | 21 |
| pANOVA | 0.000166 |
| s.dist | 0.475 |
| p.adjustANOVA | 0.00179 |
Top enriched genes
| GeneID | Gene Rank |
|---|---|
| AT1G16400 | 10680 |
| AT4G39950 | 10643 |
| AT5G11320 | 10145 |
| AT2G22330 | 9981 |
| AT2G20340 | 9463 |
| AT5G01330 | 9163 |
| AT1G31690 | 9088 |
| AT1G70560 | 8718 |
| AT3G43600 | 8061 |
| AT4G33070 | 6824 |
| AT1G31710 | 6341 |
| AT5G22300 | 6206 |
| AT5G25620 | 5403 |
| AT4G13260 | 3957 |
| AT5G20960 | 3732 |
| AT2G27150 | 3129 |
| AT4G24670 | 1461 |
| AT1G16410 | 1022 |
| AT4G28680 | -2542 |
| AT5G54960 | -3225 |
Click HERE to show all gene set members
| GeneID | Gene Rank |
|---|---|
| AT1G16400 | 10680 |
| AT4G39950 | 10643 |
| AT5G11320 | 10145 |
| AT2G22330 | 9981 |
| AT2G20340 | 9463 |
| AT5G01330 | 9163 |
| AT1G31690 | 9088 |
| AT1G70560 | 8718 |
| AT3G43600 | 8061 |
| AT4G33070 | 6824 |
| AT1G31710 | 6341 |
| AT5G22300 | 6206 |
| AT5G25620 | 5403 |
| AT4G13260 | 3957 |
| AT5G20960 | 3732 |
| AT2G27150 | 3129 |
| AT4G24670 | 1461 |
| AT1G16410 | 1022 |
| AT4G28680 | -2542 |
| AT5G54960 | -3225 |
| AT5G01320 | -4164 |
R-ATH-1119624_Methionine_salvage_pathway
| 28 | |
|---|---|
| set | R-ATH-1119624_Methionine_salvage_pathway |
| setSize | 10 |
| pANOVA | 0.0167 |
| s.dist | 0.437 |
| p.adjustANOVA | 0.0709 |
Top enriched genes
| GeneID | Gene Rank |
|---|---|
| AT4G08040 | 10710 |
| AT1G02500 | 8888 |
| AT4G34840 | 7980 |
| AT4G37770 | 7552 |
| AT5G65800 | 4344 |
| AT4G01850 | 3587 |
| AT4G11280 | 3438 |
| AT4G26200 | 1905 |
| AT2G05830 | 1037 |
| AT4G38800 | 1003 |
Click HERE to show all gene set members
| GeneID | Gene Rank |
|---|---|
| AT4G08040 | 10710 |
| AT1G02500 | 8888 |
| AT4G34840 | 7980 |
| AT4G37770 | 7552 |
| AT5G65800 | 4344 |
| AT4G01850 | 3587 |
| AT4G11280 | 3438 |
| AT4G26200 | 1905 |
| AT2G05830 | 1037 |
| AT4G38800 | 1003 |
R-ATH-1119419_Lysine_biosynthesis_VI
| 10 | |
|---|---|
| set | R-ATH-1119419_Lysine_biosynthesis_VI |
| setSize | 13 |
| pANOVA | 0.00924 |
| s.dist | 0.417 |
| p.adjustANOVA | 0.0442 |
Top enriched genes
| GeneID | Gene Rank |
|---|---|
| AT5G14060 | 9472 |
| AT4G19710 | 9057 |
| AT2G13810 | 8999 |
| AT2G45440 | 8603 |
| AT3G14390 | 7519 |
| AT4G33680 | 7112 |
| AT1G31230 | 7087 |
| AT3G60880 | 5009 |
| AT3G02020 | 3750 |
| AT3G59890 | 2318 |
| AT2G44040 | 1263 |
| AT5G11880 | 784 |
| AT5G52100 | -8128 |
Click HERE to show all gene set members
| GeneID | Gene Rank |
|---|---|
| AT5G14060 | 9472 |
| AT4G19710 | 9057 |
| AT2G13810 | 8999 |
| AT2G45440 | 8603 |
| AT3G14390 | 7519 |
| AT4G33680 | 7112 |
| AT1G31230 | 7087 |
| AT3G60880 | 5009 |
| AT3G02020 | 3750 |
| AT3G59890 | 2318 |
| AT2G44040 | 1263 |
| AT5G11880 | 784 |
| AT5G52100 | -8128 |
R-ATH-1119273_Lysine_biosynthesis_I
| 1 | |
|---|---|
| set | R-ATH-1119273_Lysine_biosynthesis_I |
| setSize | 18 |
| pANOVA | 0.00304 |
| s.dist | 0.403 |
| p.adjustANOVA | 0.0217 |
Top enriched genes
| GeneID | Gene Rank |
|---|---|
| AT3G04120 | 10327 |
| AT5G14060 | 9472 |
| AT1G14810 | 9100 |
| AT4G19710 | 9057 |
| AT2G45440 | 8603 |
| AT1G13440 | 8077 |
| AT2G19940 | 7695 |
| AT3G14390 | 7519 |
| AT1G31230 | 7087 |
| AT4G35250 | 6907 |
| AT3G60880 | 5009 |
| AT3G02020 | 3750 |
| AT3G59890 | 2318 |
| AT1G79530 | 1381 |
| AT2G44040 | 1263 |
| AT5G11880 | 784 |
| AT1G16300 | -5754 |
| AT5G52100 | -8128 |
Click HERE to show all gene set members
| GeneID | Gene Rank |
|---|---|
| AT3G04120 | 10327 |
| AT5G14060 | 9472 |
| AT1G14810 | 9100 |
| AT4G19710 | 9057 |
| AT2G45440 | 8603 |
| AT1G13440 | 8077 |
| AT2G19940 | 7695 |
| AT3G14390 | 7519 |
| AT1G31230 | 7087 |
| AT4G35250 | 6907 |
| AT3G60880 | 5009 |
| AT3G02020 | 3750 |
| AT3G59890 | 2318 |
| AT1G79530 | 1381 |
| AT2G44040 | 1263 |
| AT5G11880 | 784 |
| AT1G16300 | -5754 |
| AT5G52100 | -8128 |
R-ATH-1119283_Lysine_biosynthesis_II
| 2 | |
|---|---|
| set | R-ATH-1119283_Lysine_biosynthesis_II |
| setSize | 18 |
| pANOVA | 0.00304 |
| s.dist | 0.403 |
| p.adjustANOVA | 0.0217 |
Top enriched genes
| GeneID | Gene Rank |
|---|---|
| AT3G04120 | 10327 |
| AT5G14060 | 9472 |
| AT1G14810 | 9100 |
| AT4G19710 | 9057 |
| AT2G45440 | 8603 |
| AT1G13440 | 8077 |
| AT2G19940 | 7695 |
| AT3G14390 | 7519 |
| AT1G31230 | 7087 |
| AT4G35250 | 6907 |
| AT3G60880 | 5009 |
| AT3G02020 | 3750 |
| AT3G59890 | 2318 |
| AT1G79530 | 1381 |
| AT2G44040 | 1263 |
| AT5G11880 | 784 |
| AT1G16300 | -5754 |
| AT5G52100 | -8128 |
Click HERE to show all gene set members
| GeneID | Gene Rank |
|---|---|
| AT3G04120 | 10327 |
| AT5G14060 | 9472 |
| AT1G14810 | 9100 |
| AT4G19710 | 9057 |
| AT2G45440 | 8603 |
| AT1G13440 | 8077 |
| AT2G19940 | 7695 |
| AT3G14390 | 7519 |
| AT1G31230 | 7087 |
| AT4G35250 | 6907 |
| AT3G60880 | 5009 |
| AT3G02020 | 3750 |
| AT3G59890 | 2318 |
| AT1G79530 | 1381 |
| AT2G44040 | 1263 |
| AT5G11880 | 784 |
| AT1G16300 | -5754 |
| AT5G52100 | -8128 |
R-ATH-1119452_Galactose_degradation_II
| 14 | |
|---|---|
| set | R-ATH-1119452_Galactose_degradation_II |
| setSize | 17 |
| pANOVA | 0.00849 |
| s.dist | 0.369 |
| p.adjustANOVA | 0.0442 |
Top enriched genes
| GeneID | Gene Rank |
|---|---|
| AT4G10960 | 10905 |
| AT4G02280 | 10897 |
| AT3G29360 | 10850 |
| AT5G15490 | 10808 |
| AT5G39320 | 10124 |
| AT3G43190 | 8258 |
| AT5G17310 | 7129 |
| AT3G03250 | 6504 |
| AT1G26570 | 3178 |
| AT1G64440 | 2850 |
| AT5G20830 | 2843 |
| AT4G23920 | -172 |
| AT5G49190 | -506 |
| AT1G73370 | -1616 |
| AT1G63180 | -2005 |
| AT5G37180 | -2028 |
| AT3G06580 | -4383 |
Click HERE to show all gene set members
| GeneID | Gene Rank |
|---|---|
| AT4G10960 | 10905 |
| AT4G02280 | 10897 |
| AT3G29360 | 10850 |
| AT5G15490 | 10808 |
| AT5G39320 | 10124 |
| AT3G43190 | 8258 |
| AT5G17310 | 7129 |
| AT3G03250 | 6504 |
| AT1G26570 | 3178 |
| AT1G64440 | 2850 |
| AT5G20830 | 2843 |
| AT4G23920 | -172 |
| AT5G49190 | -506 |
| AT1G73370 | -1616 |
| AT1G63180 | -2005 |
| AT5G37180 | -2028 |
| AT3G06580 | -4383 |
R-ATH-1119430_Chorismate_biosynthesis
| 12 | |
|---|---|
| set | R-ATH-1119430_Chorismate_biosynthesis |
| setSize | 10 |
| pANOVA | 0.0481 |
| s.dist | 0.361 |
| p.adjustANOVA | 0.133 |
Top enriched genes
| GeneID | Gene Rank |
|---|---|
| AT3G06350 | 10333 |
| AT1G48860 | 9308 |
| AT2G45300 | 8241 |
| AT4G39980 | 5244 |
| AT2G21940 | 4564 |
| AT2G35500 | 4312 |
| AT5G66120 | 3158 |
| AT4G39540 | 2912 |
| AT1G48850 | -1505 |
| AT4G33510 | -4052 |
Click HERE to show all gene set members
| GeneID | Gene Rank |
|---|---|
| AT3G06350 | 10333 |
| AT1G48860 | 9308 |
| AT2G45300 | 8241 |
| AT4G39980 | 5244 |
| AT2G21940 | 4564 |
| AT2G35500 | 4312 |
| AT5G66120 | 3158 |
| AT4G39540 | 2912 |
| AT1G48850 | -1505 |
| AT4G33510 | -4052 |
R-ATH-1119334_Ethylene_biosynthesis_from_methionine
| 7 | |
|---|---|
| set | R-ATH-1119334_Ethylene_biosynthesis_from_methionine |
| setSize | 10 |
| pANOVA | 0.05 |
| s.dist | 0.358 |
| p.adjustANOVA | 0.133 |
Top enriched genes
| GeneID | Gene Rank |
|---|---|
| AT4G08040 | 10710 |
| AT1G02500 | 8888 |
| AT4G37770 | 7552 |
| AT1G05010 | 7210 |
| AT5G65800 | 4344 |
| AT4G01850 | 3587 |
| AT4G11280 | 3438 |
| AT4G26200 | 1905 |
| AT1G12010 | -1865 |
| AT1G62380 | -3556 |
Click HERE to show all gene set members
| GeneID | Gene Rank |
|---|---|
| AT4G08040 | 10710 |
| AT1G02500 | 8888 |
| AT4G37770 | 7552 |
| AT1G05010 | 7210 |
| AT5G65800 | 4344 |
| AT4G01850 | 3587 |
| AT4G11280 | 3438 |
| AT4G26200 | 1905 |
| AT1G12010 | -1865 |
| AT1G62380 | -3556 |
R-ATH-1119312_Photorespiration
| 4 | |
|---|---|
| set | R-ATH-1119312_Photorespiration |
| setSize | 25 |
| pANOVA | 0.00354 |
| s.dist | 0.337 |
| p.adjustANOVA | 0.0217 |
Top enriched genes
| GeneID | Gene Rank |
|---|---|
| AT5G38420 | 10064 |
| AT2G35120 | 9643 |
| AT5G36700 | 9580 |
| AT2G26080 | 9421 |
| AT1G68010 | 8907 |
| AT1G67090 | 8493 |
| AT1G56500 | 7605 |
| AT1G48030 | 6929 |
| AT1G80380 | 6914 |
| AT5G36790 | 6533 |
| AT3G14415 | 5828 |
| AT1G22020 | 5272 |
| AT5G38410 | 4787 |
| AT3G14420 | 4491 |
| AT1G23310 | 4105 |
| AT4G33010 | 3559 |
| AT5G47760 | 3263 |
| AT4G18360 | 2690 |
| AT1G70580 | 2195 |
| AT3G17240 | 2058 |
Click HERE to show all gene set members
| GeneID | Gene Rank |
|---|---|
| AT5G38420 | 10064 |
| AT2G35120 | 9643 |
| AT5G36700 | 9580 |
| AT2G26080 | 9421 |
| AT1G68010 | 8907 |
| AT1G67090 | 8493 |
| AT1G56500 | 7605 |
| AT1G48030 | 6929 |
| AT1G80380 | 6914 |
| AT5G36790 | 6533 |
| AT3G14415 | 5828 |
| AT1G22020 | 5272 |
| AT5G38410 | 4787 |
| AT3G14420 | 4491 |
| AT1G23310 | 4105 |
| AT4G33010 | 3559 |
| AT5G47760 | 3263 |
| AT4G18360 | 2690 |
| AT1G70580 | 2195 |
| AT3G17240 | 2058 |
| AT1G36370 | 1055 |
| AT2G35370 | -3105 |
| AT5G38430 | -5273 |
| AT1G32470 | -6578 |
| AT2G13360 | -8440 |
R-ATH-1119460_Isoleucine_biosynthesis_from_threonine
| 15 | |
|---|---|
| set | R-ATH-1119460_Isoleucine_biosynthesis_from_threonine |
| setSize | 11 |
| pANOVA | 0.0588 |
| s.dist | 0.329 |
| p.adjustANOVA | 0.133 |
Top enriched genes
| GeneID | Gene Rank |
|---|---|
| AT3G58610 | 9878 |
| AT5G16290 | 9288 |
| AT5G01330 | 9163 |
| AT4G33070 | 6824 |
| AT3G48560 | 6612 |
| AT3G10050 | 5823 |
| AT3G23940 | 4056 |
| AT3G49680 | 3015 |
| AT5G54960 | -3225 |
| AT5G10860 | -4153 |
| AT5G01320 | -4164 |
Click HERE to show all gene set members
| GeneID | Gene Rank |
|---|---|
| AT3G58610 | 9878 |
| AT5G16290 | 9288 |
| AT5G01330 | 9163 |
| AT4G33070 | 6824 |
| AT3G48560 | 6612 |
| AT3G10050 | 5823 |
| AT3G23940 | 4056 |
| AT3G49680 | 3015 |
| AT5G54960 | -3225 |
| AT5G10860 | -4153 |
| AT5G01320 | -4164 |
R-ATH-5679411_Gibberellin_signaling
| 33 | |
|---|---|
| set | R-ATH-5679411_Gibberellin_signaling |
| setSize | 20 |
| pANOVA | 0.0181 |
| s.dist | -0.305 |
| p.adjustANOVA | 0.0709 |
Top enriched genes
| GeneID | Gene Rank |
|---|---|
| AT5G03150 | -9825 |
| AT3G45260 | -9773 |
| AT2G02070 | -9334 |
| AT5G44160 | -9327 |
| AT2G02080 | -9191 |
| AT1G14580 | -8455 |
| AT1G75080 | -8195 |
| AT4G36780 | -7959 |
| AT3G59060 | -6817 |
| AT3G63010 | -4470 |
| AT3G50750 | -3917 |
| AT1G19350 | -3355 |
| AT1G78700 | -2868 |
| AT3G05120 | -1623 |
| AT1G66350 | 1747 |
| AT3G03450 | 7077 |
| AT5G27320 | 7490 |
| AT2G01570 | 7553 |
| AT1G14920 | 7796 |
| AT5G17490 | 9813 |
Click HERE to show all gene set members
| GeneID | Gene Rank |
|---|---|
| AT5G03150 | -9825 |
| AT3G45260 | -9773 |
| AT2G02070 | -9334 |
| AT5G44160 | -9327 |
| AT2G02080 | -9191 |
| AT1G14580 | -8455 |
| AT1G75080 | -8195 |
| AT4G36780 | -7959 |
| AT3G59060 | -6817 |
| AT3G63010 | -4470 |
| AT3G50750 | -3917 |
| AT1G19350 | -3355 |
| AT1G78700 | -2868 |
| AT3G05120 | -1623 |
| AT1G66350 | 1747 |
| AT3G03450 | 7077 |
| AT5G27320 | 7490 |
| AT2G01570 | 7553 |
| AT1G14920 | 7796 |
| AT5G17490 | 9813 |
R-ATH-1119540_Leucine_biosynthesis
| 25 | |
|---|---|
| set | R-ATH-1119540_Leucine_biosynthesis |
| setSize | 13 |
| pANOVA | 0.0618 |
| s.dist | 0.299 |
| p.adjustANOVA | 0.133 |
Top enriched genes
| GeneID | Gene Rank |
|---|---|
| AT4G13430 | 10363 |
| AT3G09810 | 9724 |
| AT4G35260 | 8976 |
| AT2G17130 | 8975 |
| AT1G74040 | 8771 |
| AT5G03290 | 8188 |
| AT5G23020 | 3609 |
| AT3G49680 | 3015 |
| AT3G58990 | 1635 |
| AT4G35830 | 1352 |
| AT2G43090 | -4602 |
| AT2G43100 | -5315 |
| AT5G23010 | -7783 |
Click HERE to show all gene set members
| GeneID | Gene Rank |
|---|---|
| AT4G13430 | 10363 |
| AT3G09810 | 9724 |
| AT4G35260 | 8976 |
| AT2G17130 | 8975 |
| AT1G74040 | 8771 |
| AT5G03290 | 8188 |
| AT5G23020 | 3609 |
| AT3G49680 | 3015 |
| AT3G58990 | 1635 |
| AT4G35830 | 1352 |
| AT2G43090 | -4602 |
| AT2G43100 | -5315 |
| AT5G23010 | -7783 |
R-ATH-1119494_Tryptophan_biosynthesis
| 21 | |
|---|---|
| set | R-ATH-1119494_Tryptophan_biosynthesis |
| setSize | 15 |
| pANOVA | 0.0468 |
| s.dist | 0.296 |
| p.adjustANOVA | 0.133 |
Top enriched genes
| GeneID | Gene Rank |
|---|---|
| AT5G17990 | 10806 |
| AT2G04400 | 10705 |
| AT5G05730 | 9508 |
| AT1G70570 | 7524 |
| AT5G05590 | 7523 |
| AT5G54810 | 5381 |
| AT3G54640 | 5194 |
| AT5G57890 | 4065 |
| AT4G27070 | 2875 |
| AT5G38530 | 1592 |
| AT1G25220 | 1562 |
| AT5G48220 | -41 |
| AT2G29690 | -3122 |
| AT4G02610 | -4614 |
| AT1G29410 | -5259 |
Click HERE to show all gene set members
| GeneID | Gene Rank |
|---|---|
| AT5G17990 | 10806 |
| AT2G04400 | 10705 |
| AT5G05730 | 9508 |
| AT1G70570 | 7524 |
| AT5G05590 | 7523 |
| AT5G54810 | 5381 |
| AT3G54640 | 5194 |
| AT5G57890 | 4065 |
| AT4G27070 | 2875 |
| AT5G38530 | 1592 |
| AT1G25220 | 1562 |
| AT5G48220 | -41 |
| AT2G29690 | -3122 |
| AT4G02610 | -4614 |
| AT1G29410 | -5259 |
R-ATH-9618218_Arsenic_uptake_and_detoxification
| 41 | |
|---|---|
| set | R-ATH-9618218_Arsenic_uptake_and_detoxification |
| setSize | 19 |
| pANOVA | 0.0313 |
| s.dist | 0.285 |
| p.adjustANOVA | 0.112 |
Top enriched genes
| GeneID | Gene Rank |
|---|---|
| AT3G53420 | 10789 |
| AT4G35100 | 10349 |
| AT2G37180 | 10331 |
| AT2G37170 | 8648 |
| AT4G19030 | 8544 |
| AT2G34660 | 8073 |
| AT1G30410 | 8010 |
| AT5G60660 | 7559 |
| AT3G54820 | 7283 |
| AT1G30400 | 7274 |
| AT2G34390 | 4439 |
| AT2G16850 | 1981 |
| AT1G30420 | 929 |
| AT2G39010 | -1506 |
| AT4G10380 | -1779 |
| AT2G21045 | -2769 |
| AT4G18910 | -5887 |
| AT1G31885 | -7164 |
| AT5G66170 | -9299 |
Click HERE to show all gene set members
| GeneID | Gene Rank |
|---|---|
| AT3G53420 | 10789 |
| AT4G35100 | 10349 |
| AT2G37180 | 10331 |
| AT2G37170 | 8648 |
| AT4G19030 | 8544 |
| AT2G34660 | 8073 |
| AT1G30410 | 8010 |
| AT5G60660 | 7559 |
| AT3G54820 | 7283 |
| AT1G30400 | 7274 |
| AT2G34390 | 4439 |
| AT2G16850 | 1981 |
| AT1G30420 | 929 |
| AT2G39010 | -1506 |
| AT4G10380 | -1779 |
| AT2G21045 | -2769 |
| AT4G18910 | -5887 |
| AT1G31885 | -7164 |
| AT5G66170 | -9299 |
R-ATH-1119620_GDP-L-fucose_biosynthesis_I_(from_GDP-D-mannose)
| 27 | |
|---|---|
| set | R-ATH-1119620_GDP-L-fucose_biosynthesis_I_(from_GDP-D-mannose) |
| setSize | 17 |
| pANOVA | 0.046 |
| s.dist | 0.28 |
| p.adjustANOVA | 0.133 |
Top enriched genes
| GeneID | Gene Rank |
|---|---|
| AT1G73250 | 9631 |
| AT1G17890 | 9154 |
| AT3G51160 | 9144 |
| AT4G33360 | 8605 |
| AT4G20460 | 8346 |
| AT5G59290 | 8130 |
| AT5G66280 | 6514 |
| AT4G30440 | 6139 |
| AT3G23820 | 5434 |
| AT2G45310 | 2624 |
| AT4G00110 | 2562 |
| AT1G30620 | 1964 |
| AT4G12250 | 1491 |
| AT2G28760 | 1044 |
| AT2G34850 | -5022 |
| AT3G46440 | -8033 |
| AT5G44480 | -9864 |
Click HERE to show all gene set members
| GeneID | Gene Rank |
|---|---|
| AT1G73250 | 9631 |
| AT1G17890 | 9154 |
| AT3G51160 | 9144 |
| AT4G33360 | 8605 |
| AT4G20460 | 8346 |
| AT5G59290 | 8130 |
| AT5G66280 | 6514 |
| AT4G30440 | 6139 |
| AT3G23820 | 5434 |
| AT2G45310 | 2624 |
| AT4G00110 | 2562 |
| AT1G30620 | 1964 |
| AT4G12250 | 1491 |
| AT2G28760 | 1044 |
| AT2G34850 | -5022 |
| AT3G46440 | -8033 |
| AT5G44480 | -9864 |
R-ATH-1119465_Sucrose_biosynthesis
| 16 | |
|---|---|
| set | R-ATH-1119465_Sucrose_biosynthesis |
| setSize | 17 |
| pANOVA | 0.0616 |
| s.dist | 0.262 |
| p.adjustANOVA | 0.133 |
Top enriched genes
| GeneID | Gene Rank |
|---|---|
| AT4G02280 | 10897 |
| AT3G52340 | 9986 |
| AT5G11110 | 9875 |
| AT1G23190 | 9141 |
| AT3G43190 | 8258 |
| AT3G54270 | 7541 |
| AT1G70730 | 3555 |
| AT5G20280 | 3155 |
| AT5G20830 | 2843 |
| AT2G35840 | 1916 |
| AT1G51420 | 1851 |
| AT5G49190 | -506 |
| AT5G17530 | -1001 |
| AT1G73370 | -1616 |
| AT5G37180 | -2028 |
| AT5G51820 | -3344 |
| AT1G70820 | -5792 |
Click HERE to show all gene set members
| GeneID | Gene Rank |
|---|---|
| AT4G02280 | 10897 |
| AT3G52340 | 9986 |
| AT5G11110 | 9875 |
| AT1G23190 | 9141 |
| AT3G43190 | 8258 |
| AT3G54270 | 7541 |
| AT1G70730 | 3555 |
| AT5G20280 | 3155 |
| AT5G20830 | 2843 |
| AT2G35840 | 1916 |
| AT1G51420 | 1851 |
| AT5G49190 | -506 |
| AT5G17530 | -1001 |
| AT1G73370 | -1616 |
| AT5G37180 | -2028 |
| AT5G51820 | -3344 |
| AT1G70820 | -5792 |
R-ATH-3899351_Abscisic_acid_(ABA)_mediated_signaling
| 29 | |
|---|---|
| set | R-ATH-3899351_Abscisic_acid_(ABA)_mediated_signaling |
| setSize | 13 |
| pANOVA | 0.121 |
| s.dist | 0.248 |
| p.adjustANOVA | 0.237 |
Top enriched genes
| GeneID | Gene Rank |
|---|---|
| AT2G29380 | 10910 |
| AT5G59220 | 10867 |
| AT5G57050 | 10515 |
| AT3G11410 | 10482 |
| AT1G17550 | 8803 |
| AT4G26080 | 8503 |
| AT1G72770 | 8071 |
| AT4G33950 | -844 |
| AT3G50500 | -2964 |
| AT1G12480 | -4620 |
| AT4G18290 | -6068 |
| AT5G66880 | -6247 |
| AT5G46240 | -7418 |
Click HERE to show all gene set members
| GeneID | Gene Rank |
|---|---|
| AT2G29380 | 10910 |
| AT5G59220 | 10867 |
| AT5G57050 | 10515 |
| AT3G11410 | 10482 |
| AT1G17550 | 8803 |
| AT4G26080 | 8503 |
| AT1G72770 | 8071 |
| AT4G33950 | -844 |
| AT3G50500 | -2964 |
| AT1G12480 | -4620 |
| AT4G18290 | -6068 |
| AT5G66880 | -6247 |
| AT5G46240 | -7418 |
R-ATH-1119473_Cytokinins-O-glucoside_biosynthesis
| 17 | |
|---|---|
| set | R-ATH-1119473_Cytokinins-O-glucoside_biosynthesis |
| setSize | 25 |
| pANOVA | 0.0582 |
| s.dist | 0.219 |
| p.adjustANOVA | 0.133 |
Top enriched genes
| GeneID | Gene Rank |
|---|---|
| AT5G59580 | 10834 |
| AT5G59590 | 10735 |
| AT5G05900 | 10704 |
| AT3G46650 | 9591 |
| AT3G53150 | 8659 |
| AT5G05860 | 6877 |
| AT3G46670 | 6789 |
| AT5G38040 | 6541 |
| AT3G46660 | 5970 |
| AT5G38010 | 5608 |
| AT3G53160 | 5508 |
| AT5G05870 | 4571 |
| AT3G11340 | 4229 |
| AT5G05880 | 3623 |
| AT2G36780 | 3333 |
| AT3G55710 | 612 |
| AT2G36770 | 279 |
| AT2G36750 | -1047 |
| AT5G05890 | -1870 |
| AT3G46700 | -2170 |
Click HERE to show all gene set members
| GeneID | Gene Rank |
|---|---|
| AT5G59580 | 10834 |
| AT5G59590 | 10735 |
| AT5G05900 | 10704 |
| AT3G46650 | 9591 |
| AT3G53150 | 8659 |
| AT5G05860 | 6877 |
| AT3G46670 | 6789 |
| AT5G38040 | 6541 |
| AT3G46660 | 5970 |
| AT5G38010 | 5608 |
| AT3G53160 | 5508 |
| AT5G05870 | 4571 |
| AT3G11340 | 4229 |
| AT5G05880 | 3623 |
| AT2G36780 | 3333 |
| AT3G55710 | 612 |
| AT2G36770 | 279 |
| AT2G36750 | -1047 |
| AT5G05890 | -1870 |
| AT3G46700 | -2170 |
| AT2G36790 | -4518 |
| AT2G36800 | -4596 |
| AT3G46690 | -4897 |
| AT3G55700 | -7560 |
| AT3G46720 | -8538 |
R-ATH-9611432_Recognition_of_fungal_and_bacterial_pathogens_and_immunity_response
| 40 | |
|---|---|
| set | R-ATH-9611432_Recognition_of_fungal_and_bacterial_pathogens_and_immunity_response |
| setSize | 14 |
| pANOVA | 0.163 |
| s.dist | 0.215 |
| p.adjustANOVA | 0.305 |
Top enriched genes
| GeneID | Gene Rank |
|---|---|
| AT1G11330 | 8340 |
| AT3G21630 | 6689 |
| AT1G07570 | 6568 |
| AT1G08830 | 6299 |
| AT3G46510 | 5884 |
| AT5G12150 | 5347 |
| AT4G28950 | 3785 |
| AT1G11350 | 3467 |
| AT1G11303 | 2954 |
| AT1G11300 | 2023 |
| AT5G19390 | -1636 |
| AT2G28930 | -2867 |
| AT2G28830 | -4057 |
| AT1G09090 | -4523 |
Click HERE to show all gene set members
| GeneID | Gene Rank |
|---|---|
| AT1G11330 | 8340 |
| AT3G21630 | 6689 |
| AT1G07570 | 6568 |
| AT1G08830 | 6299 |
| AT3G46510 | 5884 |
| AT5G12150 | 5347 |
| AT4G28950 | 3785 |
| AT1G11350 | 3467 |
| AT1G11303 | 2954 |
| AT1G11300 | 2023 |
| AT5G19390 | -1636 |
| AT2G28930 | -2867 |
| AT2G28830 | -4057 |
| AT1G09090 | -4523 |
R-ATH-1119428_GDP-D-rhamnose_biosynthesis
| 11 | |
|---|---|
| set | R-ATH-1119428_GDP-D-rhamnose_biosynthesis |
| setSize | 15 |
| pANOVA | 0.174 |
| s.dist | 0.203 |
| p.adjustANOVA | 0.311 |
Top enriched genes
| GeneID | Gene Rank |
|---|---|
| AT3G51160 | 9144 |
| AT4G33360 | 8605 |
| AT4G20460 | 8346 |
| AT5G59290 | 8130 |
| AT5G66280 | 6514 |
| AT4G30440 | 6139 |
| AT3G23820 | 5434 |
| AT2G45310 | 2624 |
| AT4G00110 | 2562 |
| AT1G30620 | 1964 |
| AT4G12250 | 1491 |
| AT2G28760 | 1044 |
| AT2G34850 | -5022 |
| AT3G46440 | -8033 |
| AT5G44480 | -9864 |
Click HERE to show all gene set members
| GeneID | Gene Rank |
|---|---|
| AT3G51160 | 9144 |
| AT4G33360 | 8605 |
| AT4G20460 | 8346 |
| AT5G59290 | 8130 |
| AT5G66280 | 6514 |
| AT4G30440 | 6139 |
| AT3G23820 | 5434 |
| AT2G45310 | 2624 |
| AT4G00110 | 2562 |
| AT1G30620 | 1964 |
| AT4G12250 | 1491 |
| AT2G28760 | 1044 |
| AT2G34850 | -5022 |
| AT3G46440 | -8033 |
| AT5G44480 | -9864 |
R-ATH-1119331_Cysteine_biosynthesis_I
| 6 | |
|---|---|
| set | R-ATH-1119331_Cysteine_biosynthesis_I |
| setSize | 11 |
| pANOVA | 0.287 |
| s.dist | 0.185 |
| p.adjustANOVA | 0.494 |
Top enriched genes
| GeneID | Gene Rank |
|---|---|
| AT4G14880 | 10851 |
| AT3G59760 | 10745 |
| AT3G13110 | 10040 |
| AT2G43750 | 9053 |
| AT5G56760 | 4813 |
| AT4G35640 | 534 |
| AT5G28020 | -1040 |
| AT5G28030 | -1221 |
| AT3G04940 | -2403 |
| AT2G17640 | -6823 |
| AT3G22460 | -7902 |
Click HERE to show all gene set members
| GeneID | Gene Rank |
|---|---|
| AT4G14880 | 10851 |
| AT3G59760 | 10745 |
| AT3G13110 | 10040 |
| AT2G43750 | 9053 |
| AT5G56760 | 4813 |
| AT4G35640 | 534 |
| AT5G28020 | -1040 |
| AT5G28030 | -1221 |
| AT3G04940 | -2403 |
| AT2G17640 | -6823 |
| AT3G22460 | -7902 |
R-ATH-5608118_Auxin_signalling
| 30 | |
|---|---|
| set | R-ATH-5608118_Auxin_signalling |
| setSize | 29 |
| pANOVA | 0.089 |
| s.dist | 0.182 |
| p.adjustANOVA | 0.182 |
Top enriched genes
| GeneID | Gene Rank |
|---|---|
| AT3G62980 | 10382 |
| AT5G49980 | 9901 |
| AT3G23050 | 9860 |
| AT1G04250 | 9353 |
| AT1G75840 | 9029 |
| AT4G14550 | 7307 |
| AT3G26810 | 7161 |
| AT4G35020 | 6843 |
| AT4G03190 | 6288 |
| AT1G19850 | 6154 |
| AT1G12820 | 5851 |
| AT1G20090 | 5740 |
| AT3G62100 | 5435 |
| AT1G70940 | 3360 |
| AT2G01420 | 2235 |
| AT4G24390 | 1346 |
| AT1G51950 | 1126 |
| AT3G04730 | 1013 |
| AT5G25890 | -407 |
| AT2G33860 | -1374 |
Click HERE to show all gene set members
| GeneID | Gene Rank |
|---|---|
| AT3G62980 | 10382 |
| AT5G49980 | 9901 |
| AT3G23050 | 9860 |
| AT1G04250 | 9353 |
| AT1G75840 | 9029 |
| AT4G14550 | 7307 |
| AT3G26810 | 7161 |
| AT4G35020 | 6843 |
| AT4G03190 | 6288 |
| AT1G19850 | 6154 |
| AT1G12820 | 5851 |
| AT1G20090 | 5740 |
| AT3G62100 | 5435 |
| AT1G70940 | 3360 |
| AT2G01420 | 2235 |
| AT4G24390 | 1346 |
| AT1G51950 | 1126 |
| AT3G04730 | 1013 |
| AT5G25890 | -407 |
| AT2G33860 | -1374 |
| AT1G73590 | -1609 |
| AT3G61830 | -2523 |
| AT5G37020 | -2934 |
| AT3G16500 | -2976 |
| AT1G30330 | -3411 |
| AT1G23080 | -4583 |
| AT5G20730 | -5987 |
| AT1G19220 | -6088 |
| AT2G46530 | -7124 |
R-ATH-1119438_Secologanin_and_strictosidine_biosynthesis
| 13 | |
|---|---|
| set | R-ATH-1119438_Secologanin_and_strictosidine_biosynthesis |
| setSize | 12 |
| pANOVA | 0.338 |
| s.dist | 0.16 |
| p.adjustANOVA | 0.559 |
Top enriched genes
| GeneID | Gene Rank |
|---|---|
| AT1G74000 | 10371 |
| AT3G51450 | 10201 |
| AT2G20340 | 9463 |
| AT2G41290 | 6987 |
| AT5G22020 | 6162 |
| AT1G74020 | 4132 |
| AT3G59530 | 1024 |
| AT4G28680 | -2542 |
| AT3G51430 | -3775 |
| AT1G74010 | -3986 |
| AT3G51420 | -4290 |
| AT3G51440 | -7863 |
Click HERE to show all gene set members
| GeneID | Gene Rank |
|---|---|
| AT1G74000 | 10371 |
| AT3G51450 | 10201 |
| AT2G20340 | 9463 |
| AT2G41290 | 6987 |
| AT5G22020 | 6162 |
| AT1G74020 | 4132 |
| AT3G59530 | 1024 |
| AT4G28680 | -2542 |
| AT3G51430 | -3775 |
| AT1G74010 | -3986 |
| AT3G51420 | -4290 |
| AT3G51440 | -7863 |
R-ATH-1119292_Cytokinins_7-N-glucoside_biosynthesis
| 3 | |
|---|---|
| set | R-ATH-1119292_Cytokinins_7-N-glucoside_biosynthesis |
| setSize | 10 |
| pANOVA | 0.46 |
| s.dist | 0.135 |
| p.adjustANOVA | 0.652 |
Top enriched genes
| GeneID | Gene Rank |
|---|---|
| AT3G53150 | 8659 |
| AT5G05860 | 6877 |
| AT3G46670 | 6789 |
| AT3G53160 | 5508 |
| AT3G11340 | 4229 |
| AT2G36780 | 3333 |
| AT2G36770 | 279 |
| AT2G36790 | -4518 |
| AT2G36800 | -4596 |
| AT3G55700 | -7560 |
Click HERE to show all gene set members
| GeneID | Gene Rank |
|---|---|
| AT3G53150 | 8659 |
| AT5G05860 | 6877 |
| AT3G46670 | 6789 |
| AT3G53160 | 5508 |
| AT3G11340 | 4229 |
| AT2G36780 | 3333 |
| AT2G36770 | 279 |
| AT2G36790 | -4518 |
| AT2G36800 | -4596 |
| AT3G55700 | -7560 |
R-ATH-1119375_Cytokinins_9-N-glucoside_biosynthesis
| 8 | |
|---|---|
| set | R-ATH-1119375_Cytokinins_9-N-glucoside_biosynthesis |
| setSize | 10 |
| pANOVA | 0.46 |
| s.dist | 0.135 |
| p.adjustANOVA | 0.652 |
Top enriched genes
| GeneID | Gene Rank |
|---|---|
| AT3G53150 | 8659 |
| AT5G05860 | 6877 |
| AT3G46670 | 6789 |
| AT3G53160 | 5508 |
| AT3G11340 | 4229 |
| AT2G36780 | 3333 |
| AT2G36770 | 279 |
| AT2G36790 | -4518 |
| AT2G36800 | -4596 |
| AT3G55700 | -7560 |
Click HERE to show all gene set members
| GeneID | Gene Rank |
|---|---|
| AT3G53150 | 8659 |
| AT5G05860 | 6877 |
| AT3G46670 | 6789 |
| AT3G53160 | 5508 |
| AT3G11340 | 4229 |
| AT2G36780 | 3333 |
| AT2G36770 | 279 |
| AT2G36790 | -4518 |
| AT2G36800 | -4596 |
| AT3G55700 | -7560 |
R-ATH-1119325_Sphingolipid_metabolism
| 5 | |
|---|---|
| set | R-ATH-1119325_Sphingolipid_metabolism |
| setSize | 13 |
| pANOVA | 0.47 |
| s.dist | 0.116 |
| p.adjustANOVA | 0.652 |
Top enriched genes
| GeneID | Gene Rank |
|---|---|
| AT4G21540 | 9302 |
| AT1G14290 | 8962 |
| AT1G69640 | 7195 |
| AT4G21534 | 4932 |
| AT3G25540 | 4685 |
| AT4G36480 | 3867 |
| AT5G23670 | 2099 |
| AT3G06060 | 1930 |
| AT3G48780 | 428 |
| AT3G19260 | -1910 |
| AT1G27980 | -4872 |
| AT5G19200 | -6044 |
| AT4G04930 | -8484 |
Click HERE to show all gene set members
| GeneID | Gene Rank |
|---|---|
| AT4G21540 | 9302 |
| AT1G14290 | 8962 |
| AT1G69640 | 7195 |
| AT4G21534 | 4932 |
| AT3G25540 | 4685 |
| AT4G36480 | 3867 |
| AT5G23670 | 2099 |
| AT3G06060 | 1930 |
| AT3G48780 | 428 |
| AT3G19260 | -1910 |
| AT1G27980 | -4872 |
| AT5G19200 | -6044 |
| AT4G04930 | -8484 |
R-ATH-8933811_Circadian_rhythm
| 37 | |
|---|---|
| set | R-ATH-8933811_Circadian_rhythm |
| setSize | 17 |
| pANOVA | 0.424 |
| s.dist | 0.112 |
| p.adjustANOVA | 0.652 |
Top enriched genes
| GeneID | Gene Rank |
|---|---|
| AT4G16250 | 9695 |
| AT2G46340 | 9001 |
| AT2G18790 | 8634 |
| AT4G11110 | 7891 |
| AT5G11260 | 7094 |
| AT2G23070 | 5966 |
| AT2G46830 | 4172 |
| AT2G32950 | 3132 |
| AT1G09570 | 2796 |
| AT5G23280 | 2353 |
| AT1G04400 | 261 |
| AT4G08920 | -2860 |
| AT4G17640 | -4891 |
| AT5G61380 | -5222 |
| AT5G24470 | -5589 |
| AT5G08330 | -6239 |
| AT5G47080 | -7995 |
Click HERE to show all gene set members
| GeneID | Gene Rank |
|---|---|
| AT4G16250 | 9695 |
| AT2G46340 | 9001 |
| AT2G18790 | 8634 |
| AT4G11110 | 7891 |
| AT5G11260 | 7094 |
| AT2G23070 | 5966 |
| AT2G46830 | 4172 |
| AT2G32950 | 3132 |
| AT1G09570 | 2796 |
| AT5G23280 | 2353 |
| AT1G04400 | 261 |
| AT4G08920 | -2860 |
| AT4G17640 | -4891 |
| AT5G61380 | -5222 |
| AT5G24470 | -5589 |
| AT5G08330 | -6239 |
| AT5G47080 | -7995 |
R-ATH-9645850_Activation_of_pre-replication_complex
| 43 | |
|---|---|
| set | R-ATH-9645850_Activation_of_pre-replication_complex |
| setSize | 27 |
| pANOVA | 0.363 |
| s.dist | 0.101 |
| p.adjustANOVA | 0.579 |
Top enriched genes
| GeneID | Gene Rank |
|---|---|
| AT5G46280 | 5937 |
| AT1G26840 | 5799 |
| AT2G16440 | 5192 |
| AT1G67630 | 5182 |
| AT5G45400 | 5116 |
| AT4G29910 | 4483 |
| AT4G02060 | 4456 |
| AT2G29680 | 3951 |
| AT1G67320 | 3949 |
| AT2G24490 | 3909 |
| AT5G16690 | 3676 |
| AT2G37560 | 3652 |
| AT5G44635 | 3583 |
| AT1G44900 | 3256 |
| AT5G08020 | 2594 |
| AT3G25100 | 2109 |
| AT5G67100 | 1917 |
| AT2G07690 | 677 |
| AT3G02920 | 596 |
| AT2G01120 | -577 |
Click HERE to show all gene set members
| GeneID | Gene Rank |
|---|---|
| AT5G46280 | 5937 |
| AT1G26840 | 5799 |
| AT2G16440 | 5192 |
| AT1G67630 | 5182 |
| AT5G45400 | 5116 |
| AT4G29910 | 4483 |
| AT4G02060 | 4456 |
| AT2G29680 | 3951 |
| AT1G67320 | 3949 |
| AT2G24490 | 3909 |
| AT5G16690 | 3676 |
| AT2G37560 | 3652 |
| AT5G44635 | 3583 |
| AT1G44900 | 3256 |
| AT5G08020 | 2594 |
| AT3G25100 | 2109 |
| AT5G67100 | 1917 |
| AT2G07690 | 677 |
| AT3G02920 | 596 |
| AT2G01120 | -577 |
| AT2G20980 | -1684 |
| AT4G18590 | -2171 |
| AT5G61000 | -2779 |
| AT3G52630 | -4512 |
| AT1G77320 | -4698 |
| AT5G22110 | -4818 |
| AT4G19130 | -7067 |
R-ATH-1119610_Biotin_biosynthesis_II
| 26 | |
|---|---|
| set | R-ATH-1119610_Biotin_biosynthesis_II |
| setSize | 10 |
| pANOVA | 0.633 |
| s.dist | 0.0873 |
| p.adjustANOVA | 0.785 |
Top enriched genes
| GeneID | Gene Rank |
|---|---|
| AT2G38400 | 8960 |
| AT4G36480 | 3867 |
| AT5G46180 | 2611 |
| AT5G23670 | 2099 |
| AT5G57590 | 755 |
| AT3G48780 | 428 |
| AT2G43360 | 253 |
| AT3G08860 | -266 |
| AT3G22200 | -1572 |
| AT3G04520 | -3108 |
Click HERE to show all gene set members
| GeneID | Gene Rank |
|---|---|
| AT2G38400 | 8960 |
| AT4G36480 | 3867 |
| AT5G46180 | 2611 |
| AT5G23670 | 2099 |
| AT5G57590 | 755 |
| AT3G48780 | 428 |
| AT2G43360 | 253 |
| AT3G08860 | -266 |
| AT3G22200 | -1572 |
| AT3G04520 | -3108 |
R-ATH-1119479_Valine_degradation
| 19 | |
|---|---|
| set | R-ATH-1119479_Valine_degradation |
| setSize | 12 |
| pANOVA | 0.606 |
| s.dist | -0.0861 |
| p.adjustANOVA | 0.785 |
Top enriched genes
| GeneID | Gene Rank |
|---|---|
| AT5G09300 | -8519 |
| AT4G20930 | -6597 |
| AT2G14170 | -5345 |
| AT1G10070 | -5270 |
| AT3G45300 | -1823 |
| AT4G16800 | -1029 |
| AT3G60510 | 2068 |
| AT3G13450 | 2118 |
| AT1G50110 | 2574 |
| AT1G55510 | 3389 |
| AT3G19710 | 6530 |
| AT1G21400 | 7080 |
Click HERE to show all gene set members
| GeneID | Gene Rank |
|---|---|
| AT5G09300 | -8519 |
| AT4G20930 | -6597 |
| AT2G14170 | -5345 |
| AT1G10070 | -5270 |
| AT3G45300 | -1823 |
| AT4G16800 | -1029 |
| AT3G60510 | 2068 |
| AT3G13450 | 2118 |
| AT1G50110 | 2574 |
| AT1G55510 | 3389 |
| AT3G19710 | 6530 |
| AT1G21400 | 7080 |
R-ATH-9640760_G1_phase
| 42 | |
|---|---|
| set | R-ATH-9640760_G1_phase |
| setSize | 10 |
| pANOVA | 0.639 |
| s.dist | -0.0858 |
| p.adjustANOVA | 0.785 |
Top enriched genes
| GeneID | Gene Rank |
|---|---|
| AT1G70210 | -6497 |
| AT4G34160 | -4557 |
| AT2G22490 | -3469 |
| AT5G10440 | -2345 |
| AT1G66750 | -1983 |
| AT3G48750 | -119 |
| AT5G65420 | 256 |
| AT5G27620 | 2381 |
| AT1G73690 | 3476 |
| AT3G50070 | 8867 |
Click HERE to show all gene set members
| GeneID | Gene Rank |
|---|---|
| AT1G70210 | -6497 |
| AT4G34160 | -4557 |
| AT2G22490 | -3469 |
| AT5G10440 | -2345 |
| AT1G66750 | -1983 |
| AT3G48750 | -119 |
| AT5G65420 | 256 |
| AT5G27620 | 2381 |
| AT1G73690 | 3476 |
| AT3G50070 | 8867 |
R-ATH-1119506_Tyrosine_degradation_I
| 22 | |
|---|---|
| set | R-ATH-1119506_Tyrosine_degradation_I |
| setSize | 10 |
| pANOVA | 0.682 |
| s.dist | 0.0749 |
| p.adjustANOVA | 0.807 |
Top enriched genes
| GeneID | Gene Rank |
|---|---|
| AT5G53970 | 10726 |
| AT1G11840 | 10427 |
| AT5G36160 | 10308 |
| AT2G22250 | 6631 |
| AT1G12050 | -845 |
| AT3G16700 | -1667 |
| AT5G54080 | -3056 |
| AT2G02390 | -5827 |
| AT4G15940 | -6326 |
| AT2G02380 | -7637 |
Click HERE to show all gene set members
| GeneID | Gene Rank |
|---|---|
| AT5G53970 | 10726 |
| AT1G11840 | 10427 |
| AT5G36160 | 10308 |
| AT2G22250 | 6631 |
| AT1G12050 | -845 |
| AT3G16700 | -1667 |
| AT5G54080 | -3056 |
| AT2G02390 | -5827 |
| AT4G15940 | -6326 |
| AT2G02380 | -7637 |
R-ATH-9609573_Tricin_biosynthesis
| 39 | |
|---|---|
| set | R-ATH-9609573_Tricin_biosynthesis |
| setSize | 23 |
| pANOVA | 0.597 |
| s.dist | 0.0636 |
| p.adjustANOVA | 0.785 |
Top enriched genes
| GeneID | Gene Rank |
|---|---|
| AT3G20100 | 10314 |
| AT3G20110 | 10273 |
| AT4G15350 | 9469 |
| AT1G50560 | 9095 |
| AT4G15360 | 8858 |
| AT4G15330 | 7428 |
| AT3G20940 | 5886 |
| AT5G07990 | 4724 |
| AT3G20120 | 3805 |
| AT5G47990 | 1929 |
| AT2G42250 | 1690 |
| AT5G54160 | 919 |
| AT2G14100 | -22 |
| AT3G20080 | -815 |
| AT5G06905 | -918 |
| AT5G06900 | -2107 |
| AT2G27000 | -2144 |
| AT5G42580 | -3864 |
| AT3G20130 | -4295 |
| AT3G20960 | -6056 |
Click HERE to show all gene set members
| GeneID | Gene Rank |
|---|---|
| AT3G20100 | 10314 |
| AT3G20110 | 10273 |
| AT4G15350 | 9469 |
| AT1G50560 | 9095 |
| AT4G15360 | 8858 |
| AT4G15330 | 7428 |
| AT3G20940 | 5886 |
| AT5G07990 | 4724 |
| AT3G20120 | 3805 |
| AT5G47990 | 1929 |
| AT2G42250 | 1690 |
| AT5G54160 | 919 |
| AT2G14100 | -22 |
| AT3G20080 | -815 |
| AT5G06905 | -918 |
| AT5G06900 | -2107 |
| AT2G27000 | -2144 |
| AT5G42580 | -3864 |
| AT3G20130 | -4295 |
| AT3G20960 | -6056 |
| AT1G50520 | -8833 |
| AT3G20090 | -9165 |
| AT4G15380 | -9582 |
R-ATH-1119402_Phospholipid_biosynthesis_I
| 9 | |
|---|---|
| set | R-ATH-1119402_Phospholipid_biosynthesis_I |
| setSize | 16 |
| pANOVA | 0.695 |
| s.dist | -0.0567 |
| p.adjustANOVA | 0.807 |
Top enriched genes
| GeneID | Gene Rank |
|---|---|
| AT5G60620 | -6857 |
| AT3G57650 | -6515 |
| AT5G58560 | -5178 |
| AT1G62430 | -3915 |
| AT4G26770 | -3136 |
| AT4G22340 | -2520 |
| AT1G32200 | -2339 |
| AT4G16700 | -1642 |
| AT3G18850 | -1051 |
| AT4G25970 | 829 |
| AT4G30580 | 1754 |
| AT5G57190 | 4341 |
| AT3G07690 | 4409 |
| AT2G41540 | 5171 |
| AT1G51260 | 6656 |
| AT5G40610 | 8454 |
Click HERE to show all gene set members
| GeneID | Gene Rank |
|---|---|
| AT5G60620 | -6857 |
| AT3G57650 | -6515 |
| AT5G58560 | -5178 |
| AT1G62430 | -3915 |
| AT4G26770 | -3136 |
| AT4G22340 | -2520 |
| AT1G32200 | -2339 |
| AT4G16700 | -1642 |
| AT3G18850 | -1051 |
| AT4G25970 | 829 |
| AT4G30580 | 1754 |
| AT5G57190 | 4341 |
| AT3G07690 | 4409 |
| AT2G41540 | 5171 |
| AT1G51260 | 6656 |
| AT5G40610 | 8454 |
R-ATH-6788019_Salicylic_acid_signaling
| 35 | |
|---|---|
| set | R-ATH-6788019_Salicylic_acid_signaling |
| setSize | 17 |
| pANOVA | 0.776 |
| s.dist | 0.0399 |
| p.adjustANOVA | 0.87 |
Top enriched genes
| GeneID | Gene Rank |
|---|---|
| AT1G80840 | 7083 |
| AT5G06950 | 5402 |
| AT3G12250 | 5230 |
| AT4G11330 | 4546 |
| AT5G20850 | 4345 |
| AT4G19660 | 4335 |
| AT4G31800 | 4054 |
| AT5G45110 | 3156 |
| AT4G01370 | 3122 |
| AT3G48090 | 2865 |
| AT2G46070 | 2760 |
| AT1G64280 | 2160 |
| AT2G25000 | -1175 |
| AT4G33925 | -5840 |
| AT5G06960 | -7827 |
| AT1G08320 | -9185 |
| AT3G48080 | -9571 |
Click HERE to show all gene set members
| GeneID | Gene Rank |
|---|---|
| AT1G80840 | 7083 |
| AT5G06950 | 5402 |
| AT3G12250 | 5230 |
| AT4G11330 | 4546 |
| AT5G20850 | 4345 |
| AT4G19660 | 4335 |
| AT4G31800 | 4054 |
| AT5G45110 | 3156 |
| AT4G01370 | 3122 |
| AT3G48090 | 2865 |
| AT2G46070 | 2760 |
| AT1G64280 | 2160 |
| AT2G25000 | -1175 |
| AT4G33925 | -5840 |
| AT5G06960 | -7827 |
| AT1G08320 | -9185 |
| AT3G48080 | -9571 |
R-ATH-1119477_Starch_biosynthesis
| 18 | |
|---|---|
| set | R-ATH-1119477_Starch_biosynthesis |
| setSize | 16 |
| pANOVA | 0.789 |
| s.dist | -0.0387 |
| p.adjustANOVA | 0.87 |
Top enriched genes
| GeneID | Gene Rank |
|---|---|
| AT4G18240 | -7921 |
| AT2G36390 | -5818 |
| AT1G70820 | -5792 |
| AT5G48300 | -3987 |
| AT5G51820 | -3344 |
| AT5G03650 | -2496 |
| AT1G27680 | -1529 |
| AT5G17530 | -1001 |
| AT3G20440 | -740 |
| AT5G19220 | 1577 |
| AT2G21590 | 1784 |
| AT5G24300 | 2423 |
| AT1G70730 | 3555 |
| AT4G39210 | 6755 |
| AT3G01180 | 8860 |
| AT1G23190 | 9141 |
Click HERE to show all gene set members
| GeneID | Gene Rank |
|---|---|
| AT4G18240 | -7921 |
| AT2G36390 | -5818 |
| AT1G70820 | -5792 |
| AT5G48300 | -3987 |
| AT5G51820 | -3344 |
| AT5G03650 | -2496 |
| AT1G27680 | -1529 |
| AT5G17530 | -1001 |
| AT3G20440 | -740 |
| AT5G19220 | 1577 |
| AT2G21590 | 1784 |
| AT5G24300 | 2423 |
| AT1G70730 | 3555 |
| AT4G39210 | 6755 |
| AT3G01180 | 8860 |
| AT1G23190 | 9141 |
R-ATH-9608575_Reproductive_meristem_phase_change
| 38 | |
|---|---|
| set | R-ATH-9608575_Reproductive_meristem_phase_change |
| setSize | 11 |
| pANOVA | 0.831 |
| s.dist | -0.0371 |
| p.adjustANOVA | 0.893 |
Top enriched genes
| GeneID | Gene Rank |
|---|---|
| AT3G11440 | -7311 |
| AT5G06100 | -6824 |
| AT2G35990 | -6721 |
| AT2G22840 | -6319 |
| AT5G06300 | -1906 |
| AT2G28550 | -1004 |
| AT5G28640 | 1583 |
| AT1G12820 | 5851 |
| AT4G03190 | 6288 |
| AT3G26810 | 7161 |
| AT3G62980 | 10382 |
Click HERE to show all gene set members
| GeneID | Gene Rank |
|---|---|
| AT3G11440 | -7311 |
| AT5G06100 | -6824 |
| AT2G35990 | -6721 |
| AT2G22840 | -6319 |
| AT5G06300 | -1906 |
| AT2G28550 | -1004 |
| AT5G28640 | 1583 |
| AT1G12820 | 5851 |
| AT4G03190 | 6288 |
| AT3G26810 | 7161 |
| AT3G62980 | 10382 |
R-ATH-5655101_Xyloglucan_biosynthesis
| 32 | |
|---|---|
| set | R-ATH-5655101_Xyloglucan_biosynthesis |
| setSize | 13 |
| pANOVA | 0.922 |
| s.dist | -0.0157 |
| p.adjustANOVA | 0.922 |
Top enriched genes
| GeneID | Gene Rank |
|---|---|
| AT2G15390 | -9410 |
| AT1G14100 | -6518 |
| AT1G14110 | -6232 |
| AT2G15350 | -6177 |
| AT1G74420 | -2027 |
| AT4G37690 | -192 |
| AT1G18690 | 599 |
| AT2G03220 | 1372 |
| AT5G07720 | 3315 |
| AT2G15370 | 4042 |
| AT2G20370 | 6121 |
| AT2G22900 | 8795 |
| AT1G74380 | 10613 |
Click HERE to show all gene set members
| GeneID | Gene Rank |
|---|---|
| AT2G15390 | -9410 |
| AT1G14100 | -6518 |
| AT1G14110 | -6232 |
| AT2G15350 | -6177 |
| AT1G74420 | -2027 |
| AT4G37690 | -192 |
| AT1G18690 | 599 |
| AT2G03220 | 1372 |
| AT5G07720 | 3315 |
| AT2G15370 | 4042 |
| AT2G20370 | 6121 |
| AT2G22900 | 8795 |
| AT1G74380 | 10613 |
R-ATH-8879007_Response_to_cold_temperature
| 36 | |
|---|---|
| set | R-ATH-8879007_Response_to_cold_temperature |
| setSize | 20 |
| pANOVA | 0.908 |
| s.dist | -0.0149 |
| p.adjustANOVA | 0.922 |
Top enriched genes
| GeneID | Gene Rank |
|---|---|
| AT3G49930 | -9784 |
| AT1G12860 | -8765 |
| AT3G50260 | -8757 |
| AT4G25490 | -8421 |
| AT4G25480 | -6280 |
| AT4G25470 | -5547 |
| AT1G12610 | -2405 |
| AT5G51990 | -518 |
| AT3G19580 | 417 |
| AT5G67190 | 488 |
| AT3G26744 | 1386 |
| AT3G23250 | 2398 |
| AT4G06746 | 4626 |
| AT2G31180 | 4627 |
| AT4G36900 | 4807 |
| AT1G46768 | 5265 |
| AT4G04920 | 6297 |
| AT5G60570 | 6703 |
| AT1G63030 | 9551 |
| AT2G23340 | 10687 |
Click HERE to show all gene set members
| GeneID | Gene Rank |
|---|---|
| AT3G49930 | -9784 |
| AT1G12860 | -8765 |
| AT3G50260 | -8757 |
| AT4G25490 | -8421 |
| AT4G25480 | -6280 |
| AT4G25470 | -5547 |
| AT1G12610 | -2405 |
| AT5G51990 | -518 |
| AT3G19580 | 417 |
| AT5G67190 | 488 |
| AT3G26744 | 1386 |
| AT3G23250 | 2398 |
| AT4G06746 | 4626 |
| AT2G31180 | 4627 |
| AT4G36900 | 4807 |
| AT1G46768 | 5265 |
| AT4G04920 | 6297 |
| AT5G60570 | 6703 |
| AT1G63030 | 9551 |
| AT2G23340 | 10687 |
R-ATH-5632095_Brassinosteroid_signaling
| 31 | |
|---|---|
| set | R-ATH-5632095_Brassinosteroid_signaling |
| setSize | 46 |
| pANOVA | 0.921 |
| s.dist | 0.0085 |
| p.adjustANOVA | 0.922 |
Top enriched genes
| GeneID | Gene Rank |
|---|---|
| AT1G10430 | 9942 |
| AT5G27030 | 9769 |
| AT2G27210 | 9627 |
| AT5G38480 | 9522 |
| AT1G08420 | 9307 |
| AT4G03080 | 8849 |
| AT5G65430 | 8787 |
| AT5G16050 | 8538 |
| AT1G50370 | 7819 |
| AT4G26720 | 7366 |
| AT3G19980 | 6619 |
| AT3G58500 | 6325 |
| AT5G44090 | 6003 |
| AT1G15750 | 5357 |
| AT5G28900 | 4207 |
| AT1G22300 | 3834 |
| AT5G28850 | 3417 |
| AT1G03445 | 3006 |
| AT5G10450 | 2040 |
| AT1G59830 | 1824 |
Click HERE to show all gene set members
| GeneID | Gene Rank |
|---|---|
| AT1G10430 | 9942 |
| AT5G27030 | 9769 |
| AT2G27210 | 9627 |
| AT5G38480 | 9522 |
| AT1G08420 | 9307 |
| AT4G03080 | 8849 |
| AT5G65430 | 8787 |
| AT5G16050 | 8538 |
| AT1G50370 | 7819 |
| AT4G26720 | 7366 |
| AT3G19980 | 6619 |
| AT3G58500 | 6325 |
| AT5G44090 | 6003 |
| AT1G15750 | 5357 |
| AT5G28900 | 4207 |
| AT1G22300 | 3834 |
| AT5G28850 | 3417 |
| AT1G03445 | 3006 |
| AT5G10450 | 2040 |
| AT1G59830 | 1824 |
| AT3G02520 | 1436 |
| AT1G17720 | 1265 |
| AT1G63100 | 338 |
| AT3G26020 | -54 |
| AT3G16830 | -463 |
| AT1G51690 | -2045 |
| AT5G46570 | -2346 |
| AT1G78700 | -2868 |
| AT1G80490 | -2927 |
| AT1G19350 | -3355 |
| AT1G54450 | -3539 |
| AT1G13460 | -3687 |
| AT5G55260 | -3790 |
| AT3G50750 | -3917 |
| AT1G34760 | -3989 |
| AT4G35230 | -4068 |
| AT1G06390 | -4552 |
| AT2G42500 | -4798 |
| AT1G69960 | -5590 |
| AT4G18710 | -6609 |
| AT3G59060 | -6817 |
| AT4G36780 | -7959 |
| AT2G30980 | -8158 |
| AT1G75080 | -8195 |
| AT1G03960 | -8825 |
| AT1G75340 | -9858 |
Here is the session info with all the versions of packages used.
sessionInfo()## R version 4.0.3 (2020-10-10)
## Platform: x86_64-pc-linux-gnu (64-bit)
## Running under: Ubuntu 18.04.5 LTS
##
## Matrix products: default
## BLAS: /usr/lib/x86_64-linux-gnu/blas/libblas.so.3.7.1
## LAPACK: /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3.7.1
##
## locale:
## [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
## [3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8
## [5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8
## [7] LC_PAPER=en_US.UTF-8 LC_NAME=C
## [9] LC_ADDRESS=C LC_TELEPHONE=C
## [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
##
## attached base packages:
## [1] parallel stats4 stats graphics grDevices utils datasets
## [8] methods base
##
## other attached packages:
## [1] pkgload_1.1.0 GGally_2.0.0
## [3] ggplot2_3.3.2 reshape2_1.4.4
## [5] beeswarm_0.2.3 gtools_3.8.2
## [7] tibble_3.0.4 dplyr_1.0.2
## [9] echarts4r_0.3.3 mitch_1.2.0
## [11] DESeq2_1.30.0 SummarizedExperiment_1.20.0
## [13] Biobase_2.50.0 MatrixGenerics_1.2.0
## [15] matrixStats_0.57.0 GenomicRanges_1.42.0
## [17] GenomeInfoDb_1.26.0 IRanges_2.24.0
## [19] S4Vectors_0.28.0 BiocGenerics_0.36.0
## [21] gplots_3.1.0 getDEE2_1.0.0
##
## loaded via a namespace (and not attached):
## [1] bitops_1.0-6 bit64_4.0.5 RColorBrewer_1.1-2
## [4] httr_1.4.2 rprojroot_1.3-2 backports_1.2.0
## [7] tools_4.0.3 R6_2.5.0 KernSmooth_2.23-18
## [10] DBI_1.1.0 colorspace_1.4-1 withr_2.3.0
## [13] htm2txt_2.1.1 tidyselect_1.1.0 gridExtra_2.3
## [16] bit_4.0.4 compiler_4.0.3 desc_1.2.0
## [19] DelayedArray_0.16.0 caTools_1.18.0 scales_1.1.1
## [22] genefilter_1.72.0 stringr_1.4.0 digest_0.6.27
## [25] rmarkdown_2.5 XVector_0.30.0 pkgconfig_2.0.3
## [28] htmltools_0.5.0 highr_0.8 fastmap_1.0.1
## [31] htmlwidgets_1.5.2 rlang_0.4.8 RSQLite_2.2.1
## [34] shiny_1.5.0 generics_0.1.0 jsonlite_1.7.1
## [37] BiocParallel_1.24.0 RCurl_1.98-1.2 magrittr_1.5
## [40] GenomeInfoDbData_1.2.4 Matrix_1.2-18 Rcpp_1.0.5
## [43] munsell_0.5.0 lifecycle_0.2.0 stringi_1.5.3
## [46] yaml_2.2.1 MASS_7.3-53 zlibbioc_1.36.0
## [49] plyr_1.8.6 grid_4.0.3 blob_1.2.1
## [52] promises_1.1.1 crayon_1.3.4 lattice_0.20-41
## [55] splines_4.0.3 annotate_1.68.0 locfit_1.5-9.4
## [58] knitr_1.30 pillar_1.4.6 tcltk_4.0.3
## [61] geneplotter_1.68.0 XML_3.99-0.5 glue_1.4.2
## [64] evaluate_0.14 vctrs_0.3.4 httpuv_1.5.4
## [67] testthat_3.0.0 gtable_0.3.0 purrr_0.3.4
## [70] assertthat_0.2.1 reshape_0.8.8 xfun_0.19
## [73] mime_0.9 xtable_1.8-4 later_1.1.0.1
## [76] survival_3.2-7 pbmcapply_1.5.0 AnnotationDbi_1.52.0
## [79] memoise_1.1.0 ellipsis_0.3.1END of report