date generated: 2021-03-25

Background

Mitch performs unidimensional and multidimensional gene set enrichment analysis. The concept behind this dates to work by Cox and Mann (https://doi.org/10.1186/1471-2105-13-S16-S12). This implementation is suited to R based workflows of multi-omics datasets. This software was developed by Antony Kaspi and Mark Ziemann. Learn more about Mitch at the website: https://github.com/markziemann/Mitch

Input profiles

Here is the first few lines of the input profile.

##                      x
## 1MMP        -2.1945558
## 2-Cys        1.6562904
## 2A6          1.7809241
## 2MMP        -4.3494649
## 3AT1        -0.6118777
## 3BETAHSD/D1  0.9976927
Here are some metrics about the input data profile:
Profile metrics
Profile metrics
num_genesets 959
num_genes_in_profile 21359
duplicated_genes_present 0
num_profile_genes_in_sets 20275
num_profile_genes_not_in_sets 1084

Here is a plot of the input profiles. Note the dynamic ranges.

Here is the contour plot of the profile including all detected genes.

Input genesets

Here are some metrics about the gene sets used: GMT file of genesets: ../baseline/ref/Ath_AGI_LOCUS_TAIR10_Aug2012.txt.gmt
Gene sets metrics
Gene sets metrics
num_genesets 959
num_genesets_excluded 694
num_genesets_included 265

Differential pathway expression


Interactive enrichment scatterplot

Significance is calculated by -log10(p-value). All points shown are FDR<0.05.

Significance is calculated by -log10(p-value). Top N sets shown irrespective of FDR.

Results table

Top N= 50 gene sets
set setSize pANOVA s.dist p.adjustANOVA
SIGNALLING RECEPTOR KINASES LEUCINE RICH REPEAT V 8 6.03e-05 0.819 0.003770
SIGNALLING RECEPTOR KINASES LEUCINE RICH REPEAT XIII 7 6.07e-04 0.748 0.015100
AMINO ACID METABOLISM SYNTHESIS BRANCHED CHAIN GROUP COMMON BRANCHED-CHAIN AMINO ACID AMINOTRANSFERASE 6 2.04e-03 0.727 0.036600
SIGNALLING RECEPTOR KINASES LEUCINE RICH REPEAT VIII VIII-2 14 2.61e-05 0.649 0.001950
SIGNALLING RECEPTOR KINASES EXTENSIN 5 1.69e-02 0.617 0.120000
TCA / ORG TRANSFORMATION OTHER ORGANIC ACID TRANSFORMATONS CYT MDH 5 2.03e-02 -0.599 0.130000
MISC ACYL TRANSFERASES 8 3.63e-03 0.594 0.049300
DNA SYNTHESIS/CHROMATIN STRUCTURE HISTONE CORE H3 5 2.34e-02 -0.585 0.146000
HORMONE METABOLISM CYTOKININ SIGNAL TRANSDUCTION 7 7.92e-03 0.580 0.091000
PROTEIN SYNTHESIS RIBOSOMAL PROTEIN EUKARYOTIC 60S SUBUNIT L7 6 1.40e-02 -0.579 0.110000
AMINO ACID METABOLISM SYNTHESIS AROMATIC AA TRYPTOPHAN TRYPTOPHAN SYNTHASE 6 1.45e-02 0.576 0.110000
TRANSPORT SULPHATE 12 5.76e-04 -0.574 0.015100
LIPID METABOLISM LIPID DEGRADATION LYSOPHOSPHOLIPASES GLYCEROPHOSPHODIESTER PHOSPHODIESTERASE 10 3.00e-03 0.542 0.043400
RNA REGULATION OF TRANSCRIPTION POLYCOMB GROUP (PCG) 7 1.43e-02 0.535 0.110000
SECONDARY METABOLISM PHENYLPROPANOIDS LIGNIN BIOSYNTHESIS CCR1 5 4.10e-02 -0.528 0.200000
TRANSPORT MAJOR INTRINSIC PROTEINS TIP 7 1.60e-02 -0.526 0.118000
PROTEIN POSTRANSLATIONAL MODIFICATION KINASE RECEPTOR LIKE CYTOPLASMATIC KINASE V 8 1.01e-02 0.525 0.102000
TRANSPORT NDP-SUGARS AT THE ER 7 1.76e-02 0.518 0.122000
LIPID METABOLISM LIPID DEGRADATION BETA-OXIDATION ACYL COA REDUCTASE 5 4.54e-02 -0.517 0.216000
PROTEIN SYNTHESIS RIBOSOMAL PROTEIN PROKARYOTIC CHLOROPLAST 50S SUBUNIT L12 6 2.88e-02 -0.515 0.164000
DNA SYNTHESIS/CHROMATIN STRUCTURE HISTONE CORE H4 8 1.22e-02 -0.512 0.110000
PROTEIN SYNTHESIS RIBOSOMAL PROTEIN EUKARYOTIC 60S SUBUNIT L7A 5 4.85e-02 -0.510 0.226000
MAJOR CHO METABOLISM SYNTHESIS STARCH AGPASE 8 1.28e-02 0.508 0.110000
MISC DYNAMIN 9 8.77e-03 0.504 0.095900
PROTEIN POSTRANSLATIONAL MODIFICATION KINASE RECEPTOR LIKE CYTOPLASMATIC KINASE X 8 1.45e-02 0.499 0.110000
MITOCHONDRIAL ELECTRON TRANSPORT / ATP SYNTHESIS F1-ATPASE 21 8.01e-05 -0.497 0.003770
CELL WALL PRECURSOR SYNTHESIS GAE 6 3.62e-02 0.494 0.193000
RNA REGULATION OF TRANSCRIPTION PHOR1 11 4.81e-03 -0.491 0.061600
RNA REGULATION OF TRANSCRIPTION ARF, AUXIN RESPONSE FACTOR FAMILY 15 1.19e-03 0.483 0.025400
MISC ALCOHOL DEHYDROGENASES CINNAMYL ALCOHOL DEHYDROGENASE 6 4.09e-02 0.482 0.200000
STRESS ABIOTIC COLD 17 6.06e-04 -0.480 0.015100
LIPID METABOLISM FA DESATURATION DESATURASE 8 1.97e-02 0.476 0.129000
PROTEIN SYNTHESIS RIBOSOME BIOGENESIS PRE-RRNA PROCESSING AND MODIFICATIONS MISC 9 1.35e-02 -0.475 0.110000
RNA REGULATION OF TRANSCRIPTION CCAAT BOX BINDING FACTOR FAMILY, HAP2 10 1.02e-02 0.469 0.102000
PROTEIN AA ACTIVATION ASPARAGINE-TRNA LIGASE 5 6.94e-02 -0.469 0.257000
PROTEIN SYNTHESIS RIBOSOMAL RNA 15 1.71e-03 -0.468 0.033300
SECONDARY METABOLISM FLAVONOIDS ISOFLAVONES ISOFLAVONE REDUCTASE 7 3.60e-02 -0.458 0.193000
CELL WALL CELL WALL PROTEINS AGPS AGP 39 1.08e-06 0.451 0.000121
MITOCHONDRIAL ELECTRON TRANSPORT / ATP SYNTHESIS CYTOCHROME C REDUCTASE 10 1.38e-02 -0.450 0.110000
PROTEIN POSTRANSLATIONAL MODIFICATION KINASE 21 5.07e-04 0.438 0.015100
PS CALVIN CYCLE RUBISCO INTERACTING 6 6.35e-02 0.437 0.243000
NUCLEOTIDE METABOLISM SALVAGE PHOSPHORIBOSYLTRANSFERASES UPP 5 9.31e-02 0.434 0.302000
N-METABOLISM AMMONIA METABOLISM GLUTAMINE SYNTHETASE 6 6.86e-02 0.429 0.257000
SIGNALLING RECEPTOR KINASES LEGUME-LECTIN 10 1.88e-02 -0.429 0.128000
RNA REGULATION OF TRANSCRIPTION B3 TRANSCRIPTION FACTOR FAMILY 27 1.25e-04 0.426 0.005010
TRANSPORT SUGARS SUCROSE 7 5.11e-02 0.426 0.227000
AMINO ACID METABOLISM DEGRADATION SERINE-GLYCINE-CYSTEINE GROUP GLYCINE 5 1.04e-01 -0.420 0.313000
MISC OXYGENASES 5 1.04e-01 -0.420 0.313000
MAJOR CHO METABOLISM DEGRADATION SUCROSE HEXOKINASE 5 1.04e-01 -0.420 0.313000
NOT ASSIGNED NO ONTOLOGY PAIRED AMPHIPATHIC HELIX REPEAT-CONTAINING PROTEIN 6 7.70e-02 0.417 0.272000


Results (complete table)


Click HERE to show results for all gene sets

Complete results
set setSize pANOVA s.dist p.adjustANOVA
SIGNALLING RECEPTOR KINASES LEUCINE RICH REPEAT V 8 6.03e-05 0.819000 3.77e-03
SIGNALLING RECEPTOR KINASES LEUCINE RICH REPEAT XIII 7 6.07e-04 0.748000 1.51e-02
AMINO ACID METABOLISM SYNTHESIS BRANCHED CHAIN GROUP COMMON BRANCHED-CHAIN AMINO ACID AMINOTRANSFERASE 6 2.04e-03 0.727000 3.66e-02
SIGNALLING RECEPTOR KINASES LEUCINE RICH REPEAT VIII VIII-2 14 2.61e-05 0.649000 1.95e-03
SIGNALLING RECEPTOR KINASES EXTENSIN 5 1.69e-02 0.617000 1.20e-01
TCA / ORG TRANSFORMATION OTHER ORGANIC ACID TRANSFORMATONS CYT MDH 5 2.03e-02 -0.599000 1.30e-01
MISC ACYL TRANSFERASES 8 3.63e-03 0.594000 4.93e-02
DNA SYNTHESIS/CHROMATIN STRUCTURE HISTONE CORE H3 5 2.34e-02 -0.585000 1.46e-01
HORMONE METABOLISM CYTOKININ SIGNAL TRANSDUCTION 7 7.92e-03 0.580000 9.10e-02
PROTEIN SYNTHESIS RIBOSOMAL PROTEIN EUKARYOTIC 60S SUBUNIT L7 6 1.40e-02 -0.579000 1.10e-01
AMINO ACID METABOLISM SYNTHESIS AROMATIC AA TRYPTOPHAN TRYPTOPHAN SYNTHASE 6 1.45e-02 0.576000 1.10e-01
TRANSPORT SULPHATE 12 5.76e-04 -0.574000 1.51e-02
LIPID METABOLISM LIPID DEGRADATION LYSOPHOSPHOLIPASES GLYCEROPHOSPHODIESTER PHOSPHODIESTERASE 10 3.00e-03 0.542000 4.34e-02
RNA REGULATION OF TRANSCRIPTION POLYCOMB GROUP (PCG) 7 1.43e-02 0.535000 1.10e-01
SECONDARY METABOLISM PHENYLPROPANOIDS LIGNIN BIOSYNTHESIS CCR1 5 4.10e-02 -0.528000 2.00e-01
TRANSPORT MAJOR INTRINSIC PROTEINS TIP 7 1.60e-02 -0.526000 1.18e-01
PROTEIN POSTRANSLATIONAL MODIFICATION KINASE RECEPTOR LIKE CYTOPLASMATIC KINASE V 8 1.01e-02 0.525000 1.02e-01
TRANSPORT NDP-SUGARS AT THE ER 7 1.76e-02 0.518000 1.22e-01
LIPID METABOLISM LIPID DEGRADATION BETA-OXIDATION ACYL COA REDUCTASE 5 4.54e-02 -0.517000 2.16e-01
PROTEIN SYNTHESIS RIBOSOMAL PROTEIN PROKARYOTIC CHLOROPLAST 50S SUBUNIT L12 6 2.88e-02 -0.515000 1.64e-01
DNA SYNTHESIS/CHROMATIN STRUCTURE HISTONE CORE H4 8 1.22e-02 -0.512000 1.10e-01
PROTEIN SYNTHESIS RIBOSOMAL PROTEIN EUKARYOTIC 60S SUBUNIT L7A 5 4.85e-02 -0.510000 2.26e-01
MAJOR CHO METABOLISM SYNTHESIS STARCH AGPASE 8 1.28e-02 0.508000 1.10e-01
MISC DYNAMIN 9 8.77e-03 0.504000 9.59e-02
PROTEIN POSTRANSLATIONAL MODIFICATION KINASE RECEPTOR LIKE CYTOPLASMATIC KINASE X 8 1.45e-02 0.499000 1.10e-01
MITOCHONDRIAL ELECTRON TRANSPORT / ATP SYNTHESIS F1-ATPASE 21 8.01e-05 -0.497000 3.77e-03
CELL WALL PRECURSOR SYNTHESIS GAE 6 3.62e-02 0.494000 1.93e-01
RNA REGULATION OF TRANSCRIPTION PHOR1 11 4.81e-03 -0.491000 6.16e-02
RNA REGULATION OF TRANSCRIPTION ARF, AUXIN RESPONSE FACTOR FAMILY 15 1.19e-03 0.483000 2.54e-02
MISC ALCOHOL DEHYDROGENASES CINNAMYL ALCOHOL DEHYDROGENASE 6 4.09e-02 0.482000 2.00e-01
STRESS ABIOTIC COLD 17 6.06e-04 -0.480000 1.51e-02
LIPID METABOLISM FA DESATURATION DESATURASE 8 1.97e-02 0.476000 1.29e-01
PROTEIN SYNTHESIS RIBOSOME BIOGENESIS PRE-RRNA PROCESSING AND MODIFICATIONS MISC 9 1.35e-02 -0.475000 1.10e-01
RNA REGULATION OF TRANSCRIPTION CCAAT BOX BINDING FACTOR FAMILY, HAP2 10 1.02e-02 0.469000 1.02e-01
PROTEIN AA ACTIVATION ASPARAGINE-TRNA LIGASE 5 6.94e-02 -0.469000 2.57e-01
PROTEIN SYNTHESIS RIBOSOMAL RNA 15 1.71e-03 -0.468000 3.33e-02
SECONDARY METABOLISM FLAVONOIDS ISOFLAVONES ISOFLAVONE REDUCTASE 7 3.60e-02 -0.458000 1.93e-01
CELL WALL CELL WALL PROTEINS AGPS AGP 39 1.08e-06 0.451000 1.21e-04
MITOCHONDRIAL ELECTRON TRANSPORT / ATP SYNTHESIS CYTOCHROME C REDUCTASE 10 1.38e-02 -0.450000 1.10e-01
PROTEIN POSTRANSLATIONAL MODIFICATION KINASE 21 5.07e-04 0.438000 1.51e-02
PS CALVIN CYCLE RUBISCO INTERACTING 6 6.35e-02 0.437000 2.43e-01
NUCLEOTIDE METABOLISM SALVAGE PHOSPHORIBOSYLTRANSFERASES UPP 5 9.31e-02 0.434000 3.02e-01
N-METABOLISM AMMONIA METABOLISM GLUTAMINE SYNTHETASE 6 6.86e-02 0.429000 2.57e-01
SIGNALLING RECEPTOR KINASES LEGUME-LECTIN 10 1.88e-02 -0.429000 1.28e-01
RNA REGULATION OF TRANSCRIPTION B3 TRANSCRIPTION FACTOR FAMILY 27 1.25e-04 0.426000 5.01e-03
TRANSPORT SUGARS SUCROSE 7 5.11e-02 0.426000 2.27e-01
AMINO ACID METABOLISM DEGRADATION SERINE-GLYCINE-CYSTEINE GROUP GLYCINE 5 1.04e-01 -0.420000 3.13e-01
MISC OXYGENASES 5 1.04e-01 -0.420000 3.13e-01
MAJOR CHO METABOLISM DEGRADATION SUCROSE HEXOKINASE 5 1.04e-01 -0.420000 3.13e-01
NOT ASSIGNED NO ONTOLOGY PAIRED AMPHIPATHIC HELIX REPEAT-CONTAINING PROTEIN 6 7.70e-02 0.417000 2.72e-01
PROTEIN TARGETING SECRETORY PATHWAY GOLGI 17 2.95e-03 0.416000 4.34e-02
REDOX HEME 5 1.08e-01 0.415000 3.16e-01
SIGNALLING RECEPTOR KINASES LEUCINE RICH REPEAT VI 10 2.44e-02 0.411000 1.49e-01
RNA REGULATION OF TRANSCRIPTION CCAAT BOX BINDING FACTOR FAMILY, HAP3 7 6.00e-02 -0.411000 2.43e-01
MITOCHONDRIAL ELECTRON TRANSPORT / ATP SYNTHESIS NADH-DH COMPLEX I 7 6.05e-02 -0.410000 2.43e-01
LIPID METABOLISM LIPID DEGRADATION LYSOPHOSPHOLIPASES 7 6.10e-02 0.409000 2.43e-01
LIPID METABOLISM LIPID DEGRADATION LYSOPHOSPHOLIPASES CARBOXYLESTERASE 8 4.63e-02 -0.407000 2.18e-01
PROTEIN SYNTHESIS RIBOSOME BIOGENESIS EXPORT FROM NUCLEUS 7 6.27e-02 -0.406000 2.43e-01
CELL WALL CELLULOSE SYNTHESIS COBRA 7 6.35e-02 0.405000 2.43e-01
NOT ASSIGNED NO ONTOLOGY BSD DOMAIN-CONTAINING PROTEIN 7 6.48e-02 0.403000 2.46e-01
LIPID METABOLISM PHOSPHOLIPID SYNTHESIS CYCLOPROPANE-FATTY-ACYL-PHOSPHOLIPID SYNTHASE 5 1.21e-01 0.401000 3.40e-01
SECONDARY METABOLISM FLAVONOIDS ANTHOCYANINS 8 4.96e-02 -0.401000 2.27e-01
PROTEIN SYNTHESIS RIBOSOMAL PROTEIN EUKARYOTIC 60S SUBUNIT UNKNOWN 5 1.22e-01 0.399000 3.41e-01
CELL WALL CELLULOSE SYNTHESIS 14 1.05e-02 0.395000 1.02e-01
SIGNALLING RECEPTOR KINASES LEUCINE RICH REPEAT II 13 1.37e-02 0.395000 1.10e-01
SIGNALLING RECEPTOR KINASES LEUCINE RICH REPEAT VIII VIII-1 7 7.30e-02 0.391000 2.66e-01
OPP OXIDATIVE PP 6-PHOSPHOGLUCONATE DEHYDROGENASE 7 7.55e-02 -0.388000 2.70e-01
PROTEIN SYNTHESIS RIBOSOME BIOGENESIS PRE-RRNA PROCESSING AND MODIFICATIONS WD-REPEAT PROTEINS 6 1.03e-01 -0.385000 3.13e-01
SECONDARY METABOLISM FLAVONOIDS FLAVONOLS FLAVONOL SYNTHASE (FLS) 6 1.05e-01 -0.382000 3.14e-01
PROTEIN SYNTHESIS RIBOSOME BIOGENESIS BRIX 6 1.06e-01 -0.381000 3.14e-01
PROTEIN SYNTHESIS RIBOSOME BIOGENESIS PRE-RRNA PROCESSING AND MODIFICATIONS SNORNAS 15 1.18e-02 -0.376000 1.10e-01
HORMONE METABOLISM BRASSINOSTEROID SIGNAL TRANSDUCTION BRI 6 1.20e-01 0.366000 3.40e-01
PROTEIN DEGRADATION UBIQUITIN E3 HECT 7 9.74e-02 0.362000 3.09e-01
RNA REGULATION OF TRANSCRIPTION CPP(ZN),CPP1-RELATED TRANSCRIPTION FACTOR FAMILY 8 7.72e-02 0.361000 2.72e-01
PROTEIN SYNTHESIS RELEASE 10 5.09e-02 -0.356000 2.27e-01
SIGNALLING RECEPTOR KINASES DUF 26 42 8.42e-05 0.351000 3.77e-03
HORMONE METABOLISM AUXIN SIGNAL TRANSDUCTION 23 4.11e-03 0.346000 5.42e-02
NUCLEOTIDE METABOLISM PHOSPHOTRANSFER AND PYROPHOSPHATASES URIDYLATE KINASE 6 1.45e-01 0.344000 3.69e-01
SIGNALLING PHOSPHINOSITIDES 17 1.45e-02 0.342000 1.10e-01
PROTEIN TARGETING MITOCHONDRIA 33 6.64e-04 -0.342000 1.57e-02
NUCLEOTIDE METABOLISM PHOSPHOTRANSFER AND PYROPHOSPHATASES ADENYLATE KINASE 7 1.17e-01 0.342000 3.35e-01
RNA REGULATION OF TRANSCRIPTION ARR 14 2.75e-02 0.340000 1.60e-01
SIGNALLING 14-3-3 PROTEINS 10 6.34e-02 -0.339000 2.43e-01
AMINO ACID METABOLISM MISC 5 1.90e-01 0.338000 4.37e-01
STRESS BIOTIC RECEPTORS 16 1.99e-02 0.336000 1.29e-01
DNA SYNTHESIS/CHROMATIN STRUCTURE HISTONE H1 7 1.29e-01 -0.331000 3.49e-01
MAJOR CHO METABOLISM DEGRADATION STARCH STARCH CLEAVAGE BETA AMYLASE 9 8.53e-02 -0.331000 2.92e-01
RNA REGULATION OF TRANSCRIPTION PWWP DOMAIN PROTEIN 11 6.23e-02 0.325000 2.43e-01
AMINO ACID METABOLISM SYNTHESIS AROMATIC AA CHORISMATE SHIKIMATE KINASE 5 2.09e-01 -0.324000 4.66e-01
NOT ASSIGNED NO ONTOLOGY EPSIN N-TERMINAL HOMOLOGY (ENTH) DOMAIN-CONTAINING PROTEIN 16 2.48e-02 0.324000 1.49e-01
LIPID METABOLISM LIPID DEGRADATION LIPASES 9 9.29e-02 0.323000 3.02e-01
AMINO ACID METABOLISM SYNTHESIS AROMATIC AA PHENYLALANINE AROGENATE DEHYDRATASE / PREPHENATE DEHYDRATASE 6 1.71e-01 -0.323000 4.07e-01
CELL WALL CELLULOSE SYNTHESIS CELLULOSE SYNTHASE 24 6.40e-03 0.321000 7.75e-02
PROTEIN ASSEMBLY AND COFACTOR LIGATION 23 8.43e-03 -0.317000 9.44e-02
PROTEIN DEGRADATION SUBTILASES 31 2.28e-03 0.317000 3.89e-02
MINOR CHO METABOLISM CALLOSE 14 4.27e-02 0.313000 2.06e-01
LIPID METABOLISM EXOTICS (STEROIDS, SQUALENE ETC) SPHINGOLIPIDS 18 2.31e-02 0.309000 1.46e-01
NOT ASSIGNED NO ONTOLOGY GLYCINE RICH PROTEINS 56 6.89e-05 -0.307000 3.77e-03
TCA / ORG TRANSFORMATION TCA IDH 5 2.34e-01 -0.307000 4.99e-01
MITOCHONDRIAL ELECTRON TRANSPORT / ATP SYNTHESIS NADH-DH LOCALISATION NOT CLEAR 33 2.34e-03 -0.306000 3.89e-02
RNA REGULATION OF TRANSCRIPTION FHA TRANSCRIPTION FACTOR 7 1.62e-01 -0.305000 3.98e-01
NOT ASSIGNED NO ONTOLOGY LATE EMBRYOGENESIS ABUNDANT DOMAIN-CONTAINING PROTEIN 8 1.35e-01 -0.305000 3.57e-01
FERMENTATION ALDEHYDE DEHYDROGENASE 7 1.63e-01 0.304000 3.98e-01
LIPID METABOLISM LIPID DEGRADATION BETA-OXIDATION ACYL COA DH 7 1.63e-01 0.304000 3.98e-01
SECONDARY METABOLISM FLAVONOIDS ANTHOCYANINS ANTHOCYANIN 5-AROMATIC ACYLTRANSFERASE 8 1.36e-01 0.304000 3.57e-01
PROTEIN SYNTHESIS RIBOSOME BIOGENESIS PRE-RRNA PROCESSING AND MODIFICATIONS DEXD-BOX HELICASES 14 5.27e-02 0.299000 2.29e-01
HORMONE METABOLISM BRASSINOSTEROID SIGNAL TRANSDUCTION BZR 6 2.05e-01 0.299000 4.62e-01
NOT ASSIGNED NO ONTOLOGY TETRATRICOPEPTIDE REPEAT (TPR) 27 7.56e-03 0.297000 8.91e-02
TRANSPORT P- AND V-ATPASES 29 5.64e-03 0.297000 7.02e-02
PROTEIN TARGETING UNKNOWN 9 1.25e-01 -0.296000 3.47e-01
PROTEIN SYNTHESIS RIBOSOME BIOGENESIS PRE-RRNA PROCESSING AND MODIFICATIONS SNORNPS 14 5.57e-02 -0.295000 2.35e-01
RNA REGULATION OF TRANSCRIPTION ORPHAN FAMILY 9 1.27e-01 0.294000 3.49e-01
AMINO ACID METABOLISM DEGRADATION BRANCHED CHAIN GROUP SHARED 7 1.79e-01 -0.294000 4.21e-01
CELL DIVISION PLASTID 8 1.52e-01 0.293000 3.80e-01
PROTEIN DEGRADATION UBIQUITIN E3 BTB/POZ CULLIN3 BTB/POZ 10 1.13e-01 -0.289000 3.25e-01
DEVELOPMENT LATE EMBRYOGENESIS ABUNDANT 17 4.10e-02 -0.286000 2.00e-01
LIPID METABOLISM LIPID TRANSFER PROTEINS ETC 13 7.48e-02 -0.285000 2.70e-01
SIGNALLING PHOSPHINOSITIDES PHOSPHOINOSITIDE PHOSPHOLIPASE C 9 1.40e-01 0.284000 3.61e-01
TRANSPORT NUCLEOTIDES 19 3.26e-02 0.283000 1.82e-01
LIPID METABOLISM PHOSPHOLIPID SYNTHESIS PHOSPHATIDATE CYTIDYLYLTRANSFERASE 6 2.37e-01 0.279000 4.99e-01
LIPID METABOLISM LIPID DEGRADATION BETA-OXIDATION ACYL-COA THIOESTERASE 9 1.50e-01 -0.277000 3.78e-01
RNA REGULATION OF TRANSCRIPTION AUX/IAA FAMILY 22 2.49e-02 -0.276000 1.49e-01
MISC MYROSINASES-LECTIN-JACALIN 44 1.78e-03 -0.272000 3.33e-02
PROTEIN POSTRANSLATIONAL MODIFICATION KINASE RECEPTOR LIKE CYTOPLASMATIC KINASE III 5 2.93e-01 -0.272000 5.73e-01
RNA REGULATION OF TRANSCRIPTION PHD FINGER TRANSCRIPTION FACTOR 10 1.40e-01 0.270000 3.61e-01
RNA REGULATION OF TRANSCRIPTION BROMODOMAIN PROTEINS 8 1.87e-01 0.269000 4.32e-01
TCA / ORG TRANSFORMATION OTHER ORGANIC ACID TRANSFORMATONS MALIC 6 2.53e-01 0.269000 5.28e-01
DEVELOPMENT SQUAMOSA PROMOTER BINDING LIKE (SPL) 17 5.48e-02 0.269000 2.34e-01
PROTEIN DEGRADATION UBIQUITIN UBIQUITIN PROTEASE 20 3.86e-02 0.267000 2.00e-01
SIGNALLING RECEPTOR KINASES LEUCINE RICH REPEAT XII 9 1.68e-01 0.266000 4.02e-01
REDOX DISMUTASES AND CATALASES 11 1.28e-01 0.265000 3.49e-01
HORMONE METABOLISM ABSCISIC ACID INDUCED-REGULATED-RESPONSIVE-ACTIVATED 23 2.79e-02 -0.265000 1.61e-01
METAL HANDLING BINDING, CHELATION AND STORAGE 43 3.16e-03 -0.260000 4.42e-02
CELL WALL DEGRADATION CELLULASES AND BETA -1,4-GLUCANASES 9 1.77e-01 0.260000 4.19e-01
HORMONE METABOLISM SALICYLIC ACID SYNTHESIS-DEGRADATION 9 1.82e-01 -0.257000 4.27e-01
DNA SYNTHESIS/CHROMATIN STRUCTURE HISTONE CORE H2A 14 9.83e-02 -0.255000 3.10e-01
HORMONE METABOLISM BRASSINOSTEROID SIGNAL TRANSDUCTION OTHER 5 3.23e-01 0.255000 6.03e-01
RNA REGULATION OF TRANSCRIPTION AS2,LATERAL ORGAN BOUNDARIES GENE FAMILY 20 4.96e-02 -0.254000 2.27e-01
CELL VESICLE TRANSPORT 154 6.11e-08 0.253000 1.19e-05
OPP OXIDATIVE PP G6PD 6 2.88e-01 0.250000 5.69e-01
STRESS 8 2.20e-01 -0.250000 4.83e-01
HORMONE METABOLISM CYTOKININ SYNTHESIS-DEGRADATION 16 8.31e-02 0.250000 2.86e-01
SECONDARY METABOLISM PHENYLPROPANOIDS LIGNIN BIOSYNTHESIS CCOAOMT 6 2.90e-01 -0.250000 5.70e-01
LIPID METABOLISM LIPID DEGRADATION LYSOPHOSPHOLIPASES PHOSPHOLIPASE D 12 1.42e-01 0.245000 3.62e-01
RNA REGULATION OF TRANSCRIPTION HISTONE ACETYLTRANSFERASES 18 7.24e-02 0.245000 2.66e-01
HORMONE METABOLISM GIBBERELIN SIGNAL TRANSDUCTION 7 2.63e-01 -0.244000 5.40e-01
NUCLEOTIDE METABOLISM SALVAGE PHOSPHORIBOSYLTRANSFERASES APRT 5 3.46e-01 0.243000 6.24e-01
RNA REGULATION OF TRANSCRIPTION ZN-FINGER(CCHC) 10 1.86e-01 0.241000 4.32e-01
DNA SYNTHESIS/CHROMATIN STRUCTURE HISTONE CORE H2B 8 2.37e-01 -0.241000 4.99e-01
STRESS ABIOTIC UNSPECIFIED 85 1.34e-04 -0.240000 5.01e-03
CELL WALL HEMICELLULOSE SYNTHESIS GLUCURONOXYLAN 9 2.14e-01 0.239000 4.72e-01
PROTEIN SYNTHESIS RIBOSOMAL PROTEIN EUKARYOTIC 40S SUBUNIT S17 6 3.14e-01 -0.238000 5.96e-01
PROTEIN SYNTHESIS ELONGATION 29 2.70e-02 -0.237000 1.59e-01
MISC GLUCO-, GALACTO- AND MANNOSIDASES BETA-GALACTOSIDASE 13 1.40e-01 0.236000 3.61e-01
RNA REGULATION OF TRANSCRIPTION ABI3/VP1-RELATED B3-DOMAIN-CONTAINING TRANSCRIPTION FACTOR FAMILY 10 1.97e-01 0.236000 4.50e-01
CELL WALL CELL WALL PROTEINS LRR 17 9.31e-02 0.235000 3.02e-01
STRESS ABIOTIC LIGHT 6 3.19e-01 0.235000 5.98e-01
PROTEIN SYNTHESIS INITIATION 78 3.39e-04 -0.235000 1.08e-02
C1-METABOLISM GLYCINE HYDROXYMETHYLTRANSFERASE 7 2.83e-01 -0.234000 5.63e-01
SIGNALLING RECEPTOR KINASES PROLINE EXTENSIN LIKE 14 1.31e-01 0.233000 3.52e-01
MAJOR CHO METABOLISM SYNTHESIS STARCH STARCH SYNTHASE 6 3.28e-01 0.230000 6.10e-01
NOT ASSIGNED NO ONTOLOGY FORMIN HOMOLOGY 2 DOMAIN-CONTAINING PROTEIN 17 1.03e-01 0.229000 3.13e-01
SIGNALLING PHOSPHINOSITIDES PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE 18 9.41e-02 0.228000 3.03e-01
PROTEIN DEGRADATION UBIQUITIN UBIQUITIN 26 5.06e-02 -0.221000 2.27e-01
MISC BETA 1,3 GLUCAN HYDROLASES 19 9.71e-02 -0.220000 3.09e-01
HORMONE METABOLISM ETHYLENE SIGNAL TRANSDUCTION 29 4.05e-02 -0.220000 2.00e-01
RNA REGULATION OF TRANSCRIPTION HDA 16 1.28e-01 -0.220000 3.49e-01
RNA REGULATION OF TRANSCRIPTION TRIHELIX, TRIPLE-HELIX TRANSCRIPTION FACTOR FAMILY 30 3.85e-02 0.218000 2.00e-01
SIGNALLING RECEPTOR KINASES LEUCINE RICH REPEAT III 38 1.99e-02 0.218000 1.29e-01
NUCLEOTIDE METABOLISM DEGRADATION 25 6.04e-02 0.217000 2.43e-01
STRESS ABIOTIC 22 7.85e-02 -0.217000 2.75e-01
HORMONE METABOLISM ETHYLENE SYNTHESIS-DEGRADATION 1-AMINOCYCLOPROPANE-1-CARBOXYLATE OXIDASE 5 4.02e-01 0.216000 6.45e-01
PROTEIN TARGETING SECRETORY PATHWAY VACUOLE 30 4.02e-02 0.216000 2.00e-01
TRANSPORT CYCLIC NUCLEOTIDE OR CALCIUM REGULATED CHANNELS 19 1.04e-01 0.216000 3.13e-01
MISC ALCOHOL DEHYDROGENASES 9 2.64e-01 -0.215000 5.40e-01
RNA REGULATION OF TRANSCRIPTION ZF-HD 14 1.68e-01 0.213000 4.02e-01
LIPID METABOLISM FA SYNTHESIS AND FA ELONGATION ACP PROTEIN 7 3.36e-01 -0.210000 6.16e-01
HORMONE METABOLISM BRASSINOSTEROID SYNTHESIS-DEGRADATION STEROLS OTHER 8 3.10e-01 0.207000 5.96e-01
SECONDARY METABOLISM PHENYLPROPANOIDS LIGNIN BIOSYNTHESIS CAD 8 3.12e-01 -0.206000 5.96e-01
REDOX THIOREDOXIN PDIL 13 2.02e-01 0.204000 4.58e-01
LIPID METABOLISM PHOSPHOLIPID SYNTHESIS DIACYLGLYCEROL KINASE 6 3.89e-01 0.203000 6.37e-01
SIGNALLING PHOSPHORELAY 5 4.37e-01 -0.201000 6.71e-01
PROTEIN DEGRADATION UBIQUITIN E2 38 3.36e-02 -0.199000 1.86e-01
SECONDARY METABOLISM ISOPRENOIDS NON-MEVALONATE PATHWAY 6 3.99e-01 0.199000 6.43e-01
TCA / ORG TRANSFORMATION OTHER ORGANIC ACID TRANSFORMATONS ATP-CITRATE LYASE 5 4.47e-01 -0.196000 6.78e-01
PROTEIN GLYCOSYLATION 27 7.95e-02 0.195000 2.76e-01
MAJOR CHO METABOLISM DEGRADATION SUCROSE FRUCTOKINASE 7 3.79e-01 0.192000 6.27e-01
TRANSPORT CALCIUM 21 1.29e-01 -0.191000 3.49e-01
CO-FACTOR AND VITAMINE METABOLISM 15 2.01e-01 -0.191000 4.57e-01
SECONDARY METABOLISM N MISC ALKALOID-LIKE 20 1.46e-01 -0.188000 3.69e-01
LIPID METABOLISM LIPID DEGRADATION BETA-OXIDATION ENOYL COA HYDRATASE 9 3.33e-01 -0.187000 6.16e-01
RNA REGULATION OF TRANSCRIPTION C2C2(ZN) CO-LIKE, CONSTANS-LIKE ZINC FINGER FAMILY 25 1.07e-01 -0.186000 3.15e-01
STRESS ABIOTIC DROUGHT/SALT 66 1.05e-02 0.182000 1.02e-01
SECONDARY METABOLISM PHENYLPROPANOIDS 38 5.24e-02 -0.182000 2.29e-01
SIGNALLING MISC 16 2.08e-01 -0.182000 4.66e-01
SIGNALLING LIPIDS 5 4.84e-01 -0.181000 7.12e-01
RNA REGULATION OF TRANSCRIPTION C3H ZINC FINGER FAMILY 26 1.11e-01 -0.180000 3.24e-01
HORMONE METABOLISM JASMONATE SYNTHESIS-DEGRADATION LIPOXYGENASE 6 4.45e-01 0.180000 6.78e-01
RNA REGULATION OF TRANSCRIPTION MADS BOX TRANSCRIPTION FACTOR FAMILY 31 8.78e-02 -0.177000 2.98e-01
HORMONE METABOLISM ETHYLENE INDUCED-REGULATED-RESPONSIVE-ACTIVATED 24 1.34e-01 -0.177000 3.57e-01
GLYCOLYSIS CYTOSOLIC BRANCH PHOSPHOGLYCERATE MUTASE 8 3.90e-01 -0.176000 6.37e-01
STRESS BIOTIC RESPIRATORY BURST 8 3.93e-01 -0.174000 6.40e-01
CELL ORGANISATION 345 2.66e-08 0.174000 1.19e-05
DEVELOPMENT STORAGE PROTEINS 16 2.34e-01 -0.172000 4.99e-01
BIODEGRADATION OF XENOBIOTICS 9 3.72e-01 -0.172000 6.27e-01
MISC GDSL-MOTIF LIPASE 52 3.44e-02 0.170000 1.88e-01
STRESS BIOTIC PR-PROTEINS 162 2.09e-04 0.169000 7.21e-03
SIGNALLING MAP KINASES 44 5.32e-02 0.168000 2.29e-01
HORMONE METABOLISM ABSCISIC ACID SIGNAL TRANSDUCTION 10 3.62e-01 -0.167000 6.26e-01
RNA REGULATION OF TRANSCRIPTION CHROMATIN REMODELING FACTORS 35 9.07e-02 0.165000 3.02e-01
PROTEIN DEGRADATION UBIQUITIN E3 SCF FBOX 270 3.28e-06 -0.164000 2.94e-04
MISC GCN5-RELATED N-ACETYLTRANSFERASE 25 1.55e-01 -0.164000 3.87e-01
HORMONE METABOLISM JASMONATE SYNTHESIS-DEGRADATION 12-OXO-PDA-REDUCTASE 5 5.25e-01 0.164000 7.48e-01
RNA REGULATION OF TRANSCRIPTION DNA METHYLTRANSFERASES 8 4.23e-01 0.164000 6.57e-01
TRANSPORT UNSPECIFIED ANIONS 15 2.78e-01 0.162000 5.58e-01
CELL WALL DEGRADATION MANNAN-XYLOSE-ARABINOSE-FUCOSE 16 2.69e-01 0.160000 5.42e-01
PROTEIN TARGETING SECRETORY PATHWAY ER 14 3.05e-01 0.158000 5.92e-01
NOT ASSIGNED NO ONTOLOGY BTB/POZ DOMAIN-CONTAINING PROTEIN 5 5.40e-01 -0.158000 7.56e-01
PROTEIN TARGETING PEROXISOMES 10 3.87e-01 -0.158000 6.37e-01
STRESS BIOTIC SIGNALLING MLO-LIKE 11 3.65e-01 0.158000 6.26e-01
SIGNALLING RECEPTOR KINASES WHEAT LRK10 LIKE 12 3.45e-01 0.157000 6.24e-01
SIGNALLING RECEPTOR KINASES CATHARANTHUS ROSEUS-LIKE RLK1 14 3.14e-01 0.155000 5.96e-01
RNA REGULATION OF TRANSCRIPTION AP2/EREBP, APETALA2/ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN FAMILY 88 1.22e-02 -0.155000 1.10e-01
TRANSPORT NITRATE 11 3.77e-01 0.154000 6.27e-01
TRANSPORT AMMONIUM 7 4.85e-01 0.153000 7.12e-01
PROTEIN SYNTHESIS RIBOSOMAL PROTEIN EUKARYOTIC 60S SUBUNIT L34 10 4.04e-01 -0.152000 6.45e-01
MISC PEROXIDASES 61 3.99e-02 -0.152000 2.00e-01
PROTEIN DEGRADATION 131 2.70e-03 0.152000 4.17e-02
SIGNALLING LIGHT COP9 SIGNALOSOME 12 3.66e-01 0.151000 6.26e-01
REDOX ASCORBATE AND GLUTATHIONE GLUTATHIONE 12 3.69e-01 0.150000 6.27e-01
MISC BETA 1,3 GLUCAN HYDROLASES GLUCAN ENDO-1,3-BETA-GLUCOSIDASE 22 2.25e-01 0.150000 4.91e-01
RNA REGULATION OF TRANSCRIPTION ATSR TRANSCRIPTION FACTOR FAMILY 6 5.29e-01 0.148000 7.48e-01
CELL WALL HEMICELLULOSE SYNTHESIS 12 3.77e-01 -0.147000 6.27e-01
MISC GLUCO-, GALACTO- AND MANNOSIDASES ENDOGLUCANASE 12 3.78e-01 0.147000 6.27e-01
MISC UDP GLUCOSYL AND GLUCORONYL TRANSFERASES 156 1.55e-03 0.147000 3.16e-02
RNA REGULATION OF TRANSCRIPTION NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP 13 3.60e-01 -0.147000 6.26e-01
PS PHOTORESPIRATION GLYCOLATE OXYDASE 5 5.72e-01 -0.146000 7.72e-01
PROTEIN SYNTHESIS RIBOSOME BIOGENESIS 11 4.13e-01 -0.143000 6.53e-01
MITOCHONDRIAL ELECTRON TRANSPORT / ATP SYNTHESIS CYTOCHROME C 11 4.18e-01 -0.141000 6.53e-01
GLYCOLYSIS CYTOSOLIC BRANCH PYRUVATE KINASE (PK) 6 5.50e-01 0.141000 7.63e-01
PROTEIN AA ACTIVATION 9 4.66e-01 -0.140000 6.93e-01
REDOX GLUTAREDOXINS 33 1.64e-01 -0.140000 3.98e-01
PROTEIN DEGRADATION UBIQUITIN PROTEASOM 60 6.13e-02 -0.140000 2.43e-01
PS LIGHTREACTION NADH DH 12 4.04e-01 -0.139000 6.45e-01
TCA / ORG TRANSFORMATION CARBONIC ANHYDRASES 10 4.48e-01 -0.139000 6.78e-01
SIGNALLING RECEPTOR KINASES CRINKLY LIKE 8 4.98e-01 -0.138000 7.22e-01
CELL WALL CELL WALL PROTEINS HRGP 14 3.75e-01 -0.137000 6.27e-01
CELL WALL PRECURSOR SYNTHESIS UGE 5 5.98e-01 -0.136000 7.90e-01
STRESS BIOTIC PR-PROTEINS PLANT DEFENSINS 12 4.18e-01 -0.135000 6.53e-01
DNA SYNTHESIS/CHROMATIN STRUCTURE 201 1.13e-03 0.133000 2.54e-02
RNA REGULATION OF TRANSCRIPTION TCP TRANSCRIPTION FACTOR FAMILY 18 3.35e-01 0.131000 6.16e-01
TRANSPORT MAJOR INTRINSIC PROTEINS PIP 13 4.14e-01 -0.131000 6.53e-01
LIPID METABOLISM LIPID DEGRADATION LIPASES TRIACYLGLYCEROL LIPASE 27 2.50e-01 -0.128000 5.22e-01
SIGNALLING RECEPTOR KINASES MISC 60 9.12e-02 -0.126000 3.02e-01
MISC CALCINEURIN-LIKE PHOSPHOESTERASE FAMILY PROTEIN 7 5.64e-01 0.126000 7.69e-01
SECONDARY METABOLISM FLAVONOIDS FLAVONOLS 8 5.39e-01 0.125000 7.56e-01
MISC GLUCO-, GALACTO- AND MANNOSIDASES 43 1.58e-01 0.124000 3.91e-01
PROTEIN TARGETING SECRETORY PATHWAY UNSPECIFIED 72 6.92e-02 0.124000 2.57e-01
SIGNALLING CALCIUM 198 2.68e-03 0.124000 4.17e-02
RNA REGULATION OF TRANSCRIPTION BBR/BPC 7 5.72e-01 0.123000 7.72e-01
TRANSPORT PEPTIDES AND OLIGOPEPTIDES 49 1.36e-01 0.123000 3.57e-01
MISC O-METHYL TRANSFERASES 19 3.53e-01 0.123000 6.26e-01
MISC PLASTOCYANIN-LIKE 23 3.07e-01 -0.123000 5.93e-01
AMINO ACID METABOLISM SYNTHESIS CENTRAL AMINO ACID METABOLISM ASPARTATE ASPARTATE AMINOTRANSFERASE 6 6.07e-01 -0.121000 7.98e-01
LIPID METABOLISM FA SYNTHESIS AND FA ELONGATION ACYL COA LIGASE 18 3.73e-01 -0.121000 6.27e-01
TRANSPORT P- AND V-ATPASES H+-TRANSPORTING TWO-SECTOR ATPASE 7 5.80e-01 -0.121000 7.79e-01
PS LIGHTREACTION CYCLIC ELECTRON FLOW-CHLORORESPIRATION 12 4.74e-01 0.119000 7.03e-01
RNA REGULATION OF TRANSCRIPTION E2F/DP TRANSCRIPTION FACTOR FAMILY 8 5.60e-01 0.119000 7.69e-01
HORMONE METABOLISM GIBBERELIN SYNTHESIS-DEGRADATION 7 5.91e-01 0.117000 7.83e-01
HORMONE METABOLISM GIBBERELIN INDUCED-REGULATED-RESPONSIVE-ACTIVATED 13 4.64e-01 0.117000 6.93e-01
PROTEIN TARGETING CHLOROPLAST 36 2.28e-01 0.116000 4.93e-01
RNA REGULATION OF TRANSCRIPTION PUTATIVE TRANSCRIPTION REGULATOR 144 1.64e-02 0.116000 1.19e-01
STRESS ABIOTIC TOUCH/WOUNDING 12 4.92e-01 -0.115000 7.15e-01
STRESS ABIOTIC HEAT 163 1.27e-02 -0.113000 1.10e-01
LIPID METABOLISM TAG SYNTHESIS 5 6.64e-01 0.112000 8.40e-01
RNA REGULATION OF TRANSCRIPTION JUMONJI FAMILY 13 4.86e-01 -0.111000 7.12e-01
RNA REGULATION OF TRANSCRIPTION CCAAT BOX BINDING FACTOR FAMILY, HAP5 9 5.68e-01 -0.110000 7.71e-01
TRANSPORT PHOSPHATE 23 3.61e-01 0.110000 6.26e-01
NUCLEOTIDE METABOLISM PHOSPHOTRANSFER AND PYROPHOSPHATASES NUCLEOSIDE DIPHOSPHATE KINASE 5 6.73e-01 -0.109000 8.45e-01
RNA REGULATION OF TRANSCRIPTION C2H2 ZINC FINGER FAMILY 99 6.12e-02 -0.109000 2.43e-01
RNA REGULATION OF TRANSCRIPTION NAC DOMAIN TRANSCRIPTION FACTOR FAMILY 17 4.46e-01 -0.107000 6.78e-01
STRESS BIOTIC REGULATION OF TRANSCRIPTION 6 6.51e-01 -0.107000 8.29e-01
CELL WALL MODIFICATION 52 1.85e-01 0.106000 4.31e-01
TRANSPORT METABOLITE TRANSPORTERS AT THE ENVELOPE MEMBRANE 26 3.52e-01 0.105000 6.26e-01
RNA REGULATION OF TRANSCRIPTION ALFIN-LIKE 7 6.30e-01 -0.105000 8.11e-01
RNA REGULATION OF TRANSCRIPTION METHYL BINDING DOMAIN PROTEINS 10 5.65e-01 -0.105000 7.69e-01
TRANSPORT PORINS 5 6.91e-01 -0.103000 8.48e-01
OPP OXIDATIVE PP 6-PHOSPHOGLUCONOLACTONASE 5 6.95e-01 -0.101000 8.48e-01
PROTEIN DEGRADATION METALLOPROTEASE 38 2.81e-01 0.101000 5.63e-01
SIGNALLING LIGHT 89 1.00e-01 0.101000 3.13e-01
HORMONE METABOLISM JASMONATE INDUCED-REGULATED-RESPONSIVE-ACTIVATED 12 5.46e-01 -0.101000 7.59e-01
SIGNALLING RECEPTOR KINASES WALL ASSOCIATED KINASE 17 4.77e-01 0.099700 7.05e-01
RNA REGULATION OF TRANSCRIPTION SET-DOMAIN TRANSCRIPTIONAL REGULATOR FAMILY 34 3.17e-01 0.099100 5.98e-01
RNA REGULATION OF TRANSCRIPTION GRAS TRANSCRIPTION FACTOR FAMILY 9 6.09e-01 -0.098400 7.98e-01
MISC GLUCO-, GALACTO- AND MANNOSIDASES ALPHA-GALACTOSIDASE 5 7.13e-01 0.095100 8.58e-01
PS LIGHTREACTION CYTOCHROME B6/F 6 6.88e-01 -0.094700 8.48e-01
PROTEIN TARGETING NUCLEUS 43 2.87e-01 0.093900 5.69e-01
PROTEIN AA ACTIVATION PSEUDOURIDYLATE SYNTHASE 16 5.17e-01 0.093600 7.45e-01
TCA / ORG TRANSFORMATION TCA SUCCINATE DEHYDROGENASE 6 6.93e-01 -0.093000 8.48e-01
PROTEIN DEGRADATION CYSTEINE PROTEASE 51 2.62e-01 -0.090700 5.40e-01
TRANSPORT POTASSIUM 36 3.47e-01 0.090500 6.24e-01
LIPID METABOLISM FA SYNTHESIS AND FA ELONGATION ACP DESATURASE 7 6.81e-01 0.089700 8.48e-01
TRANSPORT MAJOR INTRINSIC PROTEINS NIP 6 7.06e-01 -0.089000 8.55e-01
CELL WALL DEGRADATION PECTATE LYASES AND POLYGALACTURONASES 60 2.33e-01 0.089000 4.99e-01
TRANSPORT SUGARS 59 2.55e-01 0.085700 5.28e-01
SECONDARY METABOLISM FLAVONOIDS DIHYDROFLAVONOLS 16 5.53e-01 -0.085700 7.64e-01
RNA REGULATION OF TRANSCRIPTION HB,HOMEOBOX TRANSCRIPTION FACTOR FAMILY 69 2.26e-01 0.084300 4.92e-01
AMINO ACID METABOLISM DEGRADATION AROMATIC AA TRYPTOPHAN 12 6.14e-01 -0.084100 7.98e-01
RNA REGULATION OF TRANSCRIPTION GLOBAL TRANSCRIPTION FACTOR GROUP 14 5.86e-01 -0.084100 7.79e-01
METAL HANDLING 10 6.46e-01 -0.083900 8.24e-01
PROTEIN DEGRADATION UBIQUITIN E1 7 7.07e-01 0.082000 8.55e-01
NOT ASSIGNED NO ONTOLOGY AGENET DOMAIN-CONTAINING PROTEIN 15 5.84e-01 0.081700 7.79e-01
PROTEIN DEGRADATION AAA TYPE 36 3.98e-01 -0.081500 6.43e-01
CELL WALL PRECURSOR SYNTHESIS UXS 6 7.33e-01 -0.080500 8.73e-01
PROTEIN DEGRADATION UBIQUITIN E3 RING 359 9.80e-03 -0.079400 1.02e-01
TRANSPORT AMINO ACIDS 53 3.19e-01 0.079200 5.98e-01
METAL HANDLING ACQUISITION 9 6.85e-01 0.078200 8.48e-01
LIPID METABOLISM FA SYNTHESIS AND FA ELONGATION BETA KETOACYL COA SYNTHASE 11 6.55e-01 0.077900 8.31e-01
REDOX ASCORBATE AND GLUTATHIONE 23 5.21e-01 -0.077300 7.47e-01
LIPID METABOLISM EXOTICS(STEROIDS, SQUALENE ETC) 15 6.11e-01 -0.075800 7.98e-01
TRANSPORT METAL 65 2.94e-01 -0.075200 5.73e-01
MINOR CHO METABOLISM OTHERS 39 4.17e-01 0.075100 6.53e-01
REDOX THIOREDOXIN 51 3.55e-01 -0.074900 6.26e-01
SIGNALLING RECEPTOR KINASES S-LOCUS GLYCOPROTEIN LIKE 23 5.45e-01 0.073000 7.59e-01
MISC SHORT CHAIN DEHYDROGENASE/REDUCTASE (SDR) 44 4.09e-01 -0.072000 6.50e-01
SECONDARY METABOLISM ISOPRENOIDS 5 7.81e-01 0.071700 9.02e-01
RNA REGULATION OF TRANSCRIPTION C2C2(ZN) DOF ZINC FINGER FAMILY 31 4.92e-01 0.071300 7.15e-01
HORMONE METABOLISM AUXIN INDUCED-REGULATED-RESPONSIVE-ACTIVATED 108 2.11e-01 -0.069700 4.67e-01
NOT ASSIGNED NO ONTOLOGY PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN 417 1.57e-02 -0.069000 1.17e-01
PROTEIN DEGRADATION UBIQUITIN 58 3.66e-01 0.068600 6.26e-01
REDOX ASCORBATE AND GLUTATHIONE ASCORBATE 16 6.36e-01 -0.068400 8.16e-01
TRANSPORT ABC TRANSPORTERS AND MULTIDRUG RESISTANCE SYSTEMS 102 2.36e-01 0.068000 4.99e-01
AMINO ACID METABOLISM SYNTHESIS AROMATIC AA TRYPTOPHAN ANTHRANILATE SYNTHASE 5 7.93e-01 -0.067800 9.07e-01
SIGNALLING G-PROTEINS 216 9.24e-02 0.066400 3.02e-01
PROTEIN SYNTHESIS RIBOSOMAL PROTEIN UNKNOWN UNKNOWN 5 7.98e-01 -0.066200 9.07e-01
RNA REGULATION OF TRANSCRIPTION WRKY DOMAIN TRANSCRIPTION FACTOR FAMILY 64 3.61e-01 -0.066000 6.26e-01
TRANSPORT METABOLITE TRANSPORTERS AT THE MITOCHONDRIAL MEMBRANE 64 3.63e-01 -0.065800 6.26e-01
CO-FACTOR AND VITAMINE METABOLISM IRON-SULPHUR CLUSTERS 7 7.64e-01 -0.065500 8.95e-01
LIPID METABOLISM FA SYNTHESIS AND FA ELONGATION LONG CHAIN FATTY ACID COA LIGASE 8 7.49e-01 -0.065400 8.87e-01
NOT ASSIGNED NO ONTOLOGY DC1 DOMAIN CONTAINING PROTEIN 57 3.94e-01 -0.065200 6.40e-01
MISC RHODANESE 7 7.65e-01 0.065100 8.95e-01
RNA REGULATION OF TRANSCRIPTION SNF7 12 6.97e-01 0.065000 8.48e-01
PS LIGHTREACTION PHOTOSYSTEM II PSII POLYPEPTIDE SUBUNITS 44 4.56e-01 0.064900 6.86e-01
SIGNALLING RECEPTOR KINASES LEUCINE RICH REPEAT XI 27 5.60e-01 0.064700 7.69e-01
PROTEIN DEGRADATION ASPARTATE PROTEASE 32 5.31e-01 0.064000 7.48e-01
CELL WALL CELL WALL PROTEINS RGP 5 8.07e-01 -0.063100 9.11e-01
DNA REPAIR 74 3.48e-01 0.063100 6.24e-01
HORMONE METABOLISM ETHYLENE SYNTHESIS-DEGRADATION 1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 7 7.73e-01 0.063100 8.99e-01
SIGNALLING RECEPTOR KINASES LEUCINE RICH REPEAT I 15 6.73e-01 0.062900 8.45e-01
MICRO RNA, NATURAL ANTISENSE ETC 219 1.13e-01 0.062200 3.25e-01
PROTEIN POSTRANSLATIONAL MODIFICATION 496 1.77e-02 0.062200 1.22e-01
PROTEIN DEGRADATION AUTOPHAGY 22 6.14e-01 -0.062100 7.98e-01
PROTEIN DEGRADATION SERINE PROTEASE 78 3.46e-01 0.061800 6.24e-01
AMINO ACID METABOLISM SYNTHESIS ASPARTATE FAMILY METHIONINE HOMOCYSTEINE S-METHYLTRANSFERASE 8 7.62e-01 -0.061800 8.95e-01
RNA PROCESSING 108 2.68e-01 -0.061700 5.42e-01
RNA TRANSCRIPTION 83 3.41e-01 0.060400 6.24e-01
RNA REGULATION OF TRANSCRIPTION G2-LIKE TRANSCRIPTION FACTOR FAMILY, GARP 38 5.22e-01 0.060100 7.47e-01
RNA PROCESSING RIBONUCLEASES 50 4.66e-01 0.059600 6.93e-01
TRANSPORT UNSPECIFIED CATIONS 38 5.27e-01 0.059300 7.48e-01
RNA REGULATION OF TRANSCRIPTION MYB DOMAIN TRANSCRIPTION FACTOR FAMILY 120 2.69e-01 -0.058500 5.42e-01
MISC OXIDASES - COPPER, FLAVONE ETC 86 3.51e-01 0.058100 6.26e-01
LIPID METABOLISM EXOTICS (STEROIDS, SQUALENE ETC) PHOSPHATIDYLCHOLINESTEROL O-ACYLTRANSFERASE 5 8.28e-01 -0.056200 9.13e-01
MAJOR CHO METABOLISM DEGRADATION SUCROSE SUSY 6 8.15e-01 -0.055100 9.12e-01
NOT ASSIGNED NO ONTOLOGY TOLL-INTERLEUKIN-RESISTANCE (TIR) DOMAIN-CONTAINING PROTEIN 8 7.90e-01 0.054400 9.07e-01
RNA REGULATION OF TRANSCRIPTION GEBP LIKE 11 7.57e-01 -0.053800 8.93e-01
STRESS BIOTIC PR-PROTEINS PROTEINASE INHIBITORS TRYPSIN INHIBITOR 8 7.92e-01 -0.053800 9.07e-01
PROTEIN POSTRANSLATIONAL MODIFICATION KINASE RECEPTOR LIKE CYTOPLASMATIC KINASE VIII 9 7.80e-01 0.053700 9.02e-01
MISC MISC2 28 6.23e-01 0.053600 8.07e-01
NOT ASSIGNED NO ONTOLOGY PUMILIO/PUF RNA-BINDING DOMAIN-CONTAINING PROTEIN 10 7.69e-01 -0.053600 8.97e-01
PROTEIN DEGRADATION UBIQUITIN E3 SCF SKP 16 7.15e-01 0.052700 8.59e-01
REDOX MISC 6 8.24e-01 -0.052500 9.12e-01
NOT ASSIGNED UNKNOWN 4555 7.99e-08 -0.051800 1.19e-05
RNA REGULATION OF TRANSCRIPTION BZIP TRANSCRIPTION FACTOR FAMILY 60 5.02e-01 -0.050100 7.25e-01
SIGNALLING RECEPTOR KINASES LEUCINE RICH REPEAT VII 9 7.96e-01 0.049900 9.07e-01
SECONDARY METABOLISM SIMPLE PHENOLS 16 7.30e-01 0.049800 8.72e-01
PS LIGHTREACTION PHOTOSYSTEM I LHC-I 7 8.20e-01 0.049500 9.12e-01
CELL CYCLE 86 4.30e-01 0.049200 6.62e-01
NOT ASSIGNED NO ONTOLOGY PROLINE RICH FAMILY 36 6.14e-01 0.048500 7.98e-01
PROTEIN POSTRANSLATIONAL MODIFICATION KINASE RECEPTOR LIKE CYTOPLASMATIC KINASE IX 12 7.77e-01 0.047200 9.02e-01
SIGNALLING UNSPECIFIED 8 8.20e-01 0.046600 9.12e-01
LIPID METABOLISM PHOSPHOLIPID SYNTHESIS 16 7.50e-01 0.046000 8.87e-01
CELL DIVISION 91 4.50e-01 0.045800 6.79e-01
MISC OTHER FERREDOXINS AND RIESKE DOMAIN 5 8.60e-01 0.045500 9.35e-01
SECONDARY METABOLISM ISOPRENOIDS TERPENOIDS 24 7.08e-01 -0.044100 8.55e-01
HORMONE METABOLISM ABSCISIC ACID SYNTHESIS-DEGRADATION 10 8.11e-01 0.043800 9.11e-01
SECONDARY METABOLISM SULFUR-CONTAINING GLUCOSINOLATES DEGRADATION MYROSINASE 6 8.53e-01 -0.043600 9.34e-01
CELL CYCLE PEPTIDYLPROLYL ISOMERASE 32 6.73e-01 -0.043100 8.45e-01
RNA REGULATION OF TRANSCRIPTION BHLH,BASIC HELIX-LOOP-HELIX FAMILY 114 4.28e-01 0.043000 6.61e-01
NUCLEOTIDE METABOLISM SALVAGE NUDIX HYDROLASES 24 7.19e-01 -0.042500 8.61e-01
MISC ACID AND OTHER PHOSPHATASES 63 5.63e-01 0.042200 7.69e-01
RNA PROCESSING SPLICING 58 5.84e-01 -0.041500 7.79e-01
C1-METABOLISM 10 8.20e-01 -0.041400 9.12e-01
RNA REGULATION OF TRANSCRIPTION GENERAL TRANSCRIPTION 32 6.93e-01 0.040400 8.48e-01
PS LIGHTREACTION PHOTOSYSTEM II LHC-II 14 7.94e-01 0.040200 9.07e-01
AMINO ACID METABOLISM DEGRADATION AROMATIC AA TYROSINE 7 8.57e-01 -0.039400 9.35e-01
MINOR CHO METABOLISM TREHALOSE POTENTIAL TPS/TPP 7 8.60e-01 -0.038400 9.35e-01
NOT ASSIGNED NO ONTOLOGY HYDROXYPROLINE RICH PROTEINS 54 6.30e-01 0.037900 8.11e-01
NOT ASSIGNED NO ONTOLOGY C2 DOMAIN-CONTAINING PROTEIN 38 6.87e-01 0.037800 8.48e-01
N-METABOLISM MISC 6 8.73e-01 0.037600 9.43e-01
AMINO ACID METABOLISM DEGRADATION GLUTAMATE FAMILY ARGININE 7 8.65e-01 0.037200 9.38e-01
RNA REGULATION OF TRANSCRIPTION 14 8.10e-01 0.037200 9.11e-01
MISC PROTEASE INHIBITOR/SEED STORAGE/LIPID TRANSFER PROTEIN (LTP) FAMILY PROTEIN 57 6.44e-01 0.035300 8.24e-01
RNA REGULATION OF TRANSCRIPTION UNCLASSIFIED 270 3.74e-01 0.031400 6.27e-01
SECONDARY METABOLISM FLAVONOIDS CHALCONES 8 8.78e-01 0.031400 9.45e-01
HORMONE METABOLISM AUXIN SYNTHESIS-DEGRADATION 13 8.48e-01 0.030700 9.31e-01
PROTEIN POSTRANSLATIONAL MODIFICATION KINASE RECEPTOR LIKE CYTOPLASMATIC KINASE VII 42 7.42e-01 -0.029400 8.81e-01
PROTEIN FOLDING 64 6.85e-01 -0.029300 8.48e-01
RNA REGULATION OF TRANSCRIPTION C2C2(ZN) GATA TRANSCRIPTION FACTOR FAMILY 26 8.07e-01 0.027700 9.11e-01
LIPID METABOLISM FA SYNTHESIS AND FA ELONGATION ACYL-COA BINDING PROTEIN 6 9.07e-01 -0.027400 9.63e-01
CO-FACTOR AND VITAMINE METABOLISM PANTOTHENATE PANTOTHENATE KINASE (PANK) 5 9.18e-01 -0.026700 9.70e-01
MISC INVERTASE/PECTIN METHYLESTERASE INHIBITOR FAMILY PROTEIN 27 8.11e-01 0.026600 9.11e-01
SECONDARY METABOLISM WAX 13 8.69e-01 -0.026500 9.40e-01
MISC CYTOCHROME P450 156 5.84e-01 -0.025400 7.79e-01
MAJOR CHO METABOLISM DEGRADATION SUCROSE INVERTASES NEUTRAL 8 9.06e-01 -0.024100 9.63e-01
PROTEIN POSTRANSLATIONAL MODIFICATION KINASE RECEPTOR LIKE CYTOPLASMATIC KINASE VI 13 8.82e-01 -0.023700 9.45e-01
CO-FACTOR AND VITAMINE METABOLISM MOLYBDENUM COFACTOR 5 9.30e-01 0.022700 9.80e-01
TRANSPORT MISC 114 6.78e-01 0.022500 8.48e-01
BIODEGRADATION OF XENOBIOTICS HYDROXYACYLGLUTATHIONE HYDROLASE 5 9.32e-01 0.022200 9.80e-01
NOT ASSIGNED NO ONTOLOGY ARMADILLO/BETA-CATENIN REPEAT FAMILY PROTEIN 31 8.47e-01 -0.020000 9.31e-01
HORMONE METABOLISM ETHYLENE SYNTHESIS-DEGRADATION 18 8.84e-01 0.019900 9.45e-01
NUCLEOTIDE METABOLISM SYNTHESIS PRS-PP 5 9.39e-01 0.019900 9.83e-01
RNA REGULATION OF TRANSCRIPTION SIGMA LIKE PLANT 6 9.35e-01 0.019300 9.81e-01
CELL CELL DEATH PLANTS 6 9.42e-01 0.017100 9.83e-01
DEVELOPMENT UNSPECIFIED 567 5.31e-01 0.015400 7.48e-01
SECONDARY METABOLISM ISOPRENOIDS NON-MEVALONATE PATHWAY GERANYLGERANYL PYROPHOSPHATE SYNTHASE 5 9.56e-01 0.014300 9.83e-01
NOT ASSIGNED NO ONTOLOGY 1413 4.24e-01 0.012700 6.57e-01
RNA REGULATION OF TRANSCRIPTION NIN-LIKE BZIP-RELATED FAMILY 7 9.54e-01 -0.012600 9.83e-01
AMINO ACID METABOLISM SYNTHESIS SERINE-GLYCINE-CYSTEINE GROUP CYSTEINE OASTL 10 9.46e-01 -0.012300 9.83e-01
MINOR CHO METABOLISM TREHALOSE TPP 9 9.55e-01 -0.010800 9.83e-01
RNA REGULATION OF TRANSCRIPTION MYB-RELATED TRANSCRIPTION FACTOR FAMILY 42 9.06e-01 -0.010500 9.63e-01
RNA RNA BINDING 162 8.24e-01 -0.010100 9.12e-01
SECONDARY METABOLISM PHENYLPROPANOIDS LIGNIN BIOSYNTHESIS 4CL 8 9.62e-01 0.009850 9.83e-01
DNA UNSPECIFIED 88 8.82e-01 -0.009180 9.45e-01
BIODEGRADATION OF XENOBIOTICS LACTOYLGLUTATHIONE LYASE 10 9.60e-01 -0.009060 9.83e-01
PS LIGHTREACTION OTHER ELECTRON CARRIER (OX/RED) FERREDOXIN 6 9.70e-01 0.008790 9.88e-01
NOT ASSIGNED NO ONTOLOGY ABC1 FAMILY PROTEIN 11 9.60e-01 0.008630 9.83e-01
PS LIGHTREACTION PHOTOSYSTEM I PSI POLYPEPTIDE SUBUNITS 18 9.51e-01 0.008320 9.83e-01
MISC GLUTATHIONE S TRANSFERASES 51 9.18e-01 -0.008300 9.70e-01
NUCLEOTIDE METABOLISM PHOSPHOTRANSFER AND PYROPHOSPHATASES MISC 11 9.76e-01 0.005310 9.91e-01
STRESS BIOTIC SIGNALLING 12 9.80e-01 0.004110 9.94e-01
SIGNALLING IN SUGAR AND NUTRIENT PHYSIOLOGY 33 9.69e-01 -0.003960 9.88e-01
STRESS BIOTIC 139 9.47e-01 0.003240 9.83e-01
MITOCHONDRIAL ELECTRON TRANSPORT / ATP SYNTHESIS CYTOCHROME C OXIDASE 25 9.83e-01 0.002420 9.94e-01
RNA PROCESSING RNA HELICASE 33 9.90e-01 0.001260 9.99e-01
PROTEIN SYNTHESIS RIBOSOME BIOGENESIS PRE-RRNA PROCESSING AND MODIFICATIONS METHYLOTRANSFERASES 16 9.93e-01 0.001180 9.99e-01
SIGNALLING RECEPTOR KINASES LEUCINE RICH REPEAT X 11 9.97e-01 -0.000707 9.99e-01
RNA REGULATION OF TRANSCRIPTION PSUDO ARR TRANSCRIPTION FACTOR FAMILY 7 9.99e-01 -0.000401 9.99e-01
RNA REGULATION OF TRANSCRIPTION HSF,HEAT-SHOCK TRANSCRIPTION FACTOR FAMILY 18 9.99e-01 0.000125 9.99e-01


Detailed Gene set reports



SIGNALLING_RECEPTOR_KINASES_LEUCINE_RICH_REPEAT_V

SIGNALLING_RECEPTOR_KINASES_LEUCINE_RICH_REPEAT_V
385
set SIGNALLING_RECEPTOR_KINASES_LEUCINE_RICH_REPEAT_V
setSize 8
pANOVA 6.03e-05
s.dist 0.819
p.adjustANOVA 0.00377



Top enriched genes

Top 20 genes
GeneID Gene Rank
SRF6 10454
SRF3 9959
SRF1 9130
SRF4 8901
SUB 8535
SRF7 8009
SRF2 7955
SRF8 6735

Click HERE to show all gene set members

All member genes
GeneID Gene Rank
SRF6 10454
SRF3 9959
SRF1 9130
SRF4 8901
SUB 8535
SRF7 8009
SRF2 7955
SRF8 6735


SIGNALLING_RECEPTOR_KINASES_LEUCINE_RICH_REPEAT_XIII

SIGNALLING_RECEPTOR_KINASES_LEUCINE_RICH_REPEAT_XIII
393
set SIGNALLING_RECEPTOR_KINASES_LEUCINE_RICH_REPEAT_XIII
setSize 7
pANOVA 0.000607
s.dist 0.748
p.adjustANOVA 0.0151



Top enriched genes

Top 20 genes
GeneID Gene Rank
FEI2 10041
AT1G78530 9187
ERECTA 9051
ERL2 8978
FEI1 6373
AT5G62710 6177
ERL1 5879

Click HERE to show all gene set members

All member genes
GeneID Gene Rank
FEI2 10041
AT1G78530 9187
ERECTA 9051
ERL2 8978
FEI1 6373
AT5G62710 6177
ERL1 5879


AMINO_ACID_METABOLISM_SYNTHESIS_BRANCHED_CHAIN_GROUP_COMMON_BRANCHED-CHAIN_AMINO_ACID_AMINOTRANSFERASE

AMINO_ACID_METABOLISM_SYNTHESIS_BRANCHED_CHAIN_GROUP_COMMON_BRANCHED-CHAIN_AMINO_ACID_AMINOTRANSFERASE
12
set AMINO_ACID_METABOLISM_SYNTHESIS_BRANCHED_CHAIN_GROUP_COMMON_BRANCHED-CHAIN_AMINO_ACID_AMINOTRANSFERASE
setSize 6
pANOVA 0.00204
s.dist 0.727
p.adjustANOVA 0.0366



Top enriched genes

Top 20 genes
GeneID Gene Rank
BCAT4 10513
ATBCAT-5 9771
BCAT3 9712
ATBCAT-1 7585
BCAT6 5464
BCAT2 3328

Click HERE to show all gene set members

All member genes
GeneID Gene Rank
BCAT4 10513
ATBCAT-5 9771
BCAT3 9712
ATBCAT-1 7585
BCAT6 5464
BCAT2 3328


SIGNALLING_RECEPTOR_KINASES_LEUCINE_RICH_REPEAT_VIII_VIII-2

SIGNALLING_RECEPTOR_KINASES_LEUCINE_RICH_REPEAT_VIII_VIII-2
389
set SIGNALLING_RECEPTOR_KINASES_LEUCINE_RICH_REPEAT_VIII_VIII-2
setSize 14
pANOVA 2.61e-05
s.dist 0.649
p.adjustANOVA 0.00195



Top enriched genes

Top 20 genes
GeneID Gene Rank
RFK1 10613
AT3G09010 10401
AT1G56140 9724
AT1G53440 8886
AT1G56145 8291
RKF1 8235
AT1G29730 7944
AT1G56120 7699
AT1G53430 7583
AT1G56130 6829
AT1G07650 6370
CRPK1 5442
LRR-RLK 105
AT1G29740 -1616

Click HERE to show all gene set members

All member genes
GeneID Gene Rank
RFK1 10613
AT3G09010 10401
AT1G56140 9724
AT1G53440 8886
AT1G56145 8291
RKF1 8235
AT1G29730 7944
AT1G56120 7699
AT1G53430 7583
AT1G56130 6829
AT1G07650 6370
CRPK1 5442
LRR-RLK 105
AT1G29740 -1616


SIGNALLING_RECEPTOR_KINASES_EXTENSIN

SIGNALLING_RECEPTOR_KINASES_EXTENSIN
380
set SIGNALLING_RECEPTOR_KINASES_EXTENSIN
setSize 5
pANOVA 0.0169
s.dist 0.617
p.adjustANOVA 0.12



Top enriched genes

Top 20 genes
GeneID Gene Rank
AT1G54820 9943
ALE2 9233
AT4G02010 8896
AT5G56890 4318
AT3G58690 373

Click HERE to show all gene set members

All member genes
GeneID Gene Rank
AT1G54820 9943
ALE2 9233
AT4G02010 8896
AT5G56890 4318
AT3G58690 373


TCA_/_ORG_TRANSFORMATION_OTHER_ORGANIC_ACID_TRANSFORMATONS_CYT_MDH

TCA_/_ORG_TRANSFORMATION_OTHER_ORGANIC_ACID_TRANSFORMATONS_CYT_MDH
419
set TCA_/_ORG_TRANSFORMATION_OTHER_ORGANIC_ACID_TRANSFORMATONS_CYT_MDH
setSize 5
pANOVA 0.0203
s.dist -0.599
p.adjustANOVA 0.13



Top enriched genes

Top 20 genes
GeneID Gene Rank
AT5G58330 -10419
MDH2 -10176
MDH1 -7361
AT5G56720 -3916
MDH -278

Click HERE to show all gene set members

All member genes
GeneID Gene Rank
AT5G58330 -10419
MDH2 -10176
MDH1 -7361
AT5G56720 -3916
MDH -278


MISC_ACYL_TRANSFERASES

MISC_ACYL_TRANSFERASES
128
set MISC_ACYL_TRANSFERASES
setSize 8
pANOVA 0.00363
s.dist 0.594
p.adjustANOVA 0.0493



Top enriched genes

Top 20 genes
GeneID Gene Rank
RWA3 10508
AT1G78690 8568
AT4G01130 8124
EMB2753 7935
AT3G26840 7687
LPEAT1 6035
DGAT2 4373
AT1G65450 -2782

Click HERE to show all gene set members

All member genes
GeneID Gene Rank
RWA3 10508
AT1G78690 8568
AT4G01130 8124
EMB2753 7935
AT3G26840 7687
LPEAT1 6035
DGAT2 4373
AT1G65450 -2782


DNA_SYNTHESIS/CHROMATIN_STRUCTURE_HISTONE_CORE_H3

DNA_SYNTHESIS/CHROMATIN_STRUCTURE_HISTONE_CORE_H3
55
set DNA_SYNTHESIS/CHROMATIN_STRUCTURE_HISTONE_CORE_H3
setSize 5
pANOVA 0.0234
s.dist -0.585
p.adjustANOVA 0.146



Top enriched genes

Top 20 genes
GeneID Gene Rank
AT4G40030 -8823
HTR8 -8669
HTR2 -7056
HTR11 -3976
AT1G13370 -2884

Click HERE to show all gene set members

All member genes
GeneID Gene Rank
AT4G40030 -8823
HTR8 -8669
HTR2 -7056
HTR11 -3976
AT1G13370 -2884


HORMONE_METABOLISM_CYTOKININ_SIGNAL_TRANSDUCTION

HORMONE_METABOLISM_CYTOKININ_SIGNAL_TRANSDUCTION
72
set HORMONE_METABOLISM_CYTOKININ_SIGNAL_TRANSDUCTION
setSize 7
pANOVA 0.00792
s.dist 0.58
p.adjustANOVA 0.091



Top enriched genes

Top 20 genes
GeneID Gene Rank
ARR12 10387
AHK4 10241
AHK1 9069
AHK2 7267
AHK3 6089
AHK5 1899
ALL1 -1871

Click HERE to show all gene set members

All member genes
GeneID Gene Rank
ARR12 10387
AHK4 10241
AHK1 9069
AHK2 7267
AHK3 6089
AHK5 1899
ALL1 -1871


PROTEIN_SYNTHESIS_RIBOSOMAL_PROTEIN_EUKARYOTIC_60S_SUBUNIT_L7

PROTEIN_SYNTHESIS_RIBOSOMAL_PROTEIN_EUKARYOTIC_60S_SUBUNIT_L7
235
set PROTEIN_SYNTHESIS_RIBOSOMAL_PROTEIN_EUKARYOTIC_60S_SUBUNIT_L7
setSize 6
pANOVA 0.014
s.dist -0.579
p.adjustANOVA 0.11



Top enriched genes

Top 20 genes
GeneID Gene Rank
RPL7D -10570
RPL7B -10461
AT5G08180 -8142
AT2G44120 -6955
RPL7A -2298
AT4G22380 1128

Click HERE to show all gene set members

All member genes
GeneID Gene Rank
RPL7D -10570
RPL7B -10461
AT5G08180 -8142
AT2G44120 -6955
RPL7A -2298
AT4G22380 1128


AMINO_ACID_METABOLISM_SYNTHESIS_AROMATIC_AA_TRYPTOPHAN_TRYPTOPHAN_SYNTHASE

AMINO_ACID_METABOLISM_SYNTHESIS_AROMATIC_AA_TRYPTOPHAN_TRYPTOPHAN_SYNTHASE
10
set AMINO_ACID_METABOLISM_SYNTHESIS_AROMATIC_AA_TRYPTOPHAN_TRYPTOPHAN_SYNTHASE
setSize 6
pANOVA 0.0145
s.dist 0.576
p.adjustANOVA 0.11



Top enriched genes

Top 20 genes
GeneID Gene Rank
AT5G28237 8810
TSB1 7864
TSBtype2 7676
TSA1 5875
TRPA1 5290
TSB2 1209

Click HERE to show all gene set members

All member genes
GeneID Gene Rank
AT5G28237 8810
TSB1 7864
TSBtype2 7676
TSA1 5875
TRPA1 5290
TSB2 1209


TRANSPORT_SULPHATE

TRANSPORT_SULPHATE
446
set TRANSPORT_SULPHATE
setSize 12
pANOVA 0.000576
s.dist -0.574
p.adjustANOVA 0.0151



Top enriched genes

Top 20 genes
GeneID Gene Rank
SULTR1;2 -10371
SULTR4;2 -10106
SULTR3;5 -10088
SULTR2;2 -9970
SULTR3;1 -9429
SULTR3;2 -8498
SULTR4;1 -8023
SULTR1;3 -6789
SULTR3;4 -5617
SULTR2;1 -2313
SULTR1;1 -1615
SULTR3;3 8914

Click HERE to show all gene set members

All member genes
GeneID Gene Rank
SULTR1;2 -10371
SULTR4;2 -10106
SULTR3;5 -10088
SULTR2;2 -9970
SULTR3;1 -9429
SULTR3;2 -8498
SULTR4;1 -8023
SULTR1;3 -6789
SULTR3;4 -5617
SULTR2;1 -2313
SULTR1;1 -1615
SULTR3;3 8914


LIPID_METABOLISM_LIPID_DEGRADATION_LYSOPHOSPHOLIPASES_GLYCEROPHOSPHODIESTER_PHOSPHODIESTERASE

LIPID_METABOLISM_LIPID_DEGRADATION_LYSOPHOSPHOLIPASES_GLYCEROPHOSPHODIESTER_PHOSPHODIESTERASE
104
set LIPID_METABOLISM_LIPID_DEGRADATION_LYSOPHOSPHOLIPASES_GLYCEROPHOSPHODIESTER_PHOSPHODIESTERASE
setSize 10
pANOVA 0.003
s.dist 0.542
p.adjustANOVA 0.0434



Top enriched genes

Top 20 genes
GeneID Gene Rank
GDPDL3 10005
AT5G08030 9993
SVL2 9956
GDPDL4 9733
GDPD4 9656
GDPD5 8918
GDPD3 7626
SNC4 5187
GDPD1 -5096
GDPD2 -8462

Click HERE to show all gene set members

All member genes
GeneID Gene Rank
GDPDL3 10005
AT5G08030 9993
SVL2 9956
GDPDL4 9733
GDPD4 9656
GDPD5 8918
GDPD3 7626
SNC4 5187
GDPD1 -5096
GDPD2 -8462


RNA_REGULATION_OF_TRANSCRIPTION_POLYCOMB_GROUP_(PCG)

RNA_REGULATION_OF_TRANSCRIPTION_POLYCOMB_GROUP_(PCG)
329
set RNA_REGULATION_OF_TRANSCRIPTION_POLYCOMB_GROUP_(PCG)
setSize 7
pANOVA 0.0143
s.dist 0.535
p.adjustANOVA 0.11



Top enriched genes

Top 20 genes
GeneID Gene Rank
AT5G65910 9939
EMF2 8049
FIE 8046
AT1G16690 5742
VRN2 4297
AT1G79020 2662
EZA1 989

Click HERE to show all gene set members

All member genes
GeneID Gene Rank
AT5G65910 9939
EMF2 8049
FIE 8046
AT1G16690 5742
VRN2 4297
AT1G79020 2662
EZA1 989


SECONDARY_METABOLISM_PHENYLPROPANOIDS_LIGNIN_BIOSYNTHESIS_CCR1

SECONDARY_METABOLISM_PHENYLPROPANOIDS_LIGNIN_BIOSYNTHESIS_CCR1
360
set SECONDARY_METABOLISM_PHENYLPROPANOIDS_LIGNIN_BIOSYNTHESIS_CCR1
setSize 5
pANOVA 0.041
s.dist -0.528
p.adjustANOVA 0.2



Top enriched genes

Top 20 genes
GeneID Gene Rank
AT5G14700 -8014
AT4G30470 -7236
CCR1 -7155
AT5G58490 -3321
CCR2 -2607

Click HERE to show all gene set members

All member genes
GeneID Gene Rank
AT5G14700 -8014
AT4G30470 -7236
CCR1 -7155
AT5G58490 -3321
CCR2 -2607


TRANSPORT_MAJOR_INTRINSIC_PROTEINS_TIP

TRANSPORT_MAJOR_INTRINSIC_PROTEINS_TIP
430
set TRANSPORT_MAJOR_INTRINSIC_PROTEINS_TIP
setSize 7
pANOVA 0.016
s.dist -0.526
p.adjustANOVA 0.118



Top enriched genes

Top 20 genes
GeneID Gene Rank
TIP2-3 -10685
TIP2-2 -10380
TIP4-1 -9072
TIP1-3 -8516
TIP1-1 -4161
TIP1-2 -3037
TIP2-1 6347

Click HERE to show all gene set members

All member genes
GeneID Gene Rank
TIP2-3 -10685
TIP2-2 -10380
TIP4-1 -9072
TIP1-3 -8516
TIP1-1 -4161
TIP1-2 -3037
TIP2-1 6347


PROTEIN_POSTRANSLATIONAL_MODIFICATION_KINASE_RECEPTOR_LIKE_CYTOPLASMATIC_KINASE_V

PROTEIN_POSTRANSLATIONAL_MODIFICATION_KINASE_RECEPTOR_LIKE_CYTOPLASMATIC_KINASE_V
225
set PROTEIN_POSTRANSLATIONAL_MODIFICATION_KINASE_RECEPTOR_LIKE_CYTOPLASMATIC_KINASE_V
setSize 8
pANOVA 0.0101
s.dist 0.525
p.adjustANOVA 0.102



Top enriched genes

Top 20 genes
GeneID Gene Rank
AT1G09440 9591
AT4G34500 8361
AT3G59110 7600
AT5G18500 7514
AT1G01540 7154
AT1G56720 5967
AT2G42960 3722
GPK1 -5306

Click HERE to show all gene set members

All member genes
GeneID Gene Rank
AT1G09440 9591
AT4G34500 8361
AT3G59110 7600
AT5G18500 7514
AT1G01540 7154
AT1G56720 5967
AT2G42960 3722
GPK1 -5306


TRANSPORT_NDP-SUGARS_AT_THE_ER

TRANSPORT_NDP-SUGARS_AT_THE_ER
435
set TRANSPORT_NDP-SUGARS_AT_THE_ER
setSize 7
pANOVA 0.0176
s.dist 0.518
p.adjustANOVA 0.122



Top enriched genes

Top 20 genes
GeneID Gene Rank
UTR2 10120
UTR3 8502
UTR5 7820
GONST1 6956
ATNST-KT1 6501
UTR1 4601
AT4G32270 -6017

Click HERE to show all gene set members

All member genes
GeneID Gene Rank
UTR2 10120
UTR3 8502
UTR5 7820
GONST1 6956
ATNST-KT1 6501
UTR1 4601
AT4G32270 -6017


LIPID_METABOLISM_LIPID_DEGRADATION_BETA-OXIDATION_ACYL_COA_REDUCTASE

LIPID_METABOLISM_LIPID_DEGRADATION_BETA-OXIDATION_ACYL_COA_REDUCTASE
97
set LIPID_METABOLISM_LIPID_DEGRADATION_BETA-OXIDATION_ACYL_COA_REDUCTASE
setSize 5
pANOVA 0.0454
s.dist -0.517
p.adjustANOVA 0.216



Top enriched genes

Top 20 genes
GeneID Gene Rank
FAR5 -10111
FAR4 -9969
FAR8 -8557
FAR1 -4989
FAR3 5872

Click HERE to show all gene set members

All member genes
GeneID Gene Rank
FAR5 -10111
FAR4 -9969
FAR8 -8557
FAR1 -4989
FAR3 5872


PROTEIN_SYNTHESIS_RIBOSOMAL_PROTEIN_PROKARYOTIC_CHLOROPLAST_50S_SUBUNIT_L12

PROTEIN_SYNTHESIS_RIBOSOMAL_PROTEIN_PROKARYOTIC_CHLOROPLAST_50S_SUBUNIT_L12
238
set PROTEIN_SYNTHESIS_RIBOSOMAL_PROTEIN_PROKARYOTIC_CHLOROPLAST_50S_SUBUNIT_L12
setSize 6
pANOVA 0.0288
s.dist -0.515
p.adjustANOVA 0.164



Top enriched genes

Top 20 genes
GeneID Gene Rank
RPL12B -9627
AT1G70190 -8717
RPL12C -6112
RPL12A -6042
AT3G06040 -3770
AT4G36420 1065

Click HERE to show all gene set members

All member genes
GeneID Gene Rank
RPL12B -9627
AT1G70190 -8717
RPL12C -6112
RPL12A -6042
AT3G06040 -3770
AT4G36420 1065


DNA_SYNTHESIS/CHROMATIN_STRUCTURE_HISTONE_CORE_H4

DNA_SYNTHESIS/CHROMATIN_STRUCTURE_HISTONE_CORE_H4
56
set DNA_SYNTHESIS/CHROMATIN_STRUCTURE_HISTONE_CORE_H4
setSize 8
pANOVA 0.0122
s.dist -0.512
p.adjustANOVA 0.11



Top enriched genes

Top 20 genes
GeneID Gene Rank
AT3G53730 -10358
AT1G07660 -10300
AT5G59690 -6877
AT5G59970 -4606
AT3G45930 -4191
AT1G07820 -3520
HIS4 -2656
AT3G46320 -1469

Click HERE to show all gene set members

All member genes
GeneID Gene Rank
AT3G53730 -10358
AT1G07660 -10300
AT5G59690 -6877
AT5G59970 -4606
AT3G45930 -4191
AT1G07820 -3520
HIS4 -2656
AT3G46320 -1469


PROTEIN_SYNTHESIS_RIBOSOMAL_PROTEIN_EUKARYOTIC_60S_SUBUNIT_L7A

PROTEIN_SYNTHESIS_RIBOSOMAL_PROTEIN_EUKARYOTIC_60S_SUBUNIT_L7A
236
set PROTEIN_SYNTHESIS_RIBOSOMAL_PROTEIN_EUKARYOTIC_60S_SUBUNIT_L7A
setSize 5
pANOVA 0.0485
s.dist -0.51
p.adjustANOVA 0.226



Top enriched genes

Top 20 genes
GeneID Gene Rank
AT5G20160 -9421
AT4G12600 -8881
RPL7AB -8102
RPL7AA -4801
AT4G01790 3838

Click HERE to show all gene set members

All member genes
GeneID Gene Rank
AT5G20160 -9421
AT4G12600 -8881
RPL7AB -8102
RPL7AA -4801
AT4G01790 3838


MAJOR_CHO_METABOLISM_SYNTHESIS_STARCH_AGPASE

MAJOR_CHO_METABOLISM_SYNTHESIS_STARCH_AGPASE
117
set MAJOR_CHO_METABOLISM_SYNTHESIS_STARCH_AGPASE
setSize 8
pANOVA 0.0128
s.dist 0.508
p.adjustANOVA 0.11



Top enriched genes

Top 20 genes
GeneID Gene Rank
APS2 10631
ADG2 9202
APL2 8053
AT2G04650 7735
AT1G74910 5017
APL4 2023
APS1 1245
APL3 -788

Click HERE to show all gene set members

All member genes
GeneID Gene Rank
APS2 10631
ADG2 9202
APL2 8053
AT2G04650 7735
AT1G74910 5017
APL4 2023
APS1 1245
APL3 -788


MISC_DYNAMIN

MISC_DYNAMIN
135
set MISC_DYNAMIN
setSize 9
pANOVA 0.00877
s.dist 0.504
p.adjustANOVA 0.0959



Top enriched genes

Top 20 genes
GeneID Gene Rank
ARC5 10524
DRP3B 9937
DRP1C 9398
DRP3A 9044
DRP2B 8256
DRP2A 5676
DRP1E 3821
DRP5A -852
DRP1B -7635

Click HERE to show all gene set members

All member genes
GeneID Gene Rank
ARC5 10524
DRP3B 9937
DRP1C 9398
DRP3A 9044
DRP2B 8256
DRP2A 5676
DRP1E 3821
DRP5A -852
DRP1B -7635


PROTEIN_POSTRANSLATIONAL_MODIFICATION_KINASE_RECEPTOR_LIKE_CYTOPLASMATIC_KINASE_X

PROTEIN_POSTRANSLATIONAL_MODIFICATION_KINASE_RECEPTOR_LIKE_CYTOPLASMATIC_KINASE_X
229
set PROTEIN_POSTRANSLATIONAL_MODIFICATION_KINASE_RECEPTOR_LIKE_CYTOPLASMATIC_KINASE_X
setSize 8
pANOVA 0.0145
s.dist 0.499
p.adjustANOVA 0.11



Top enriched genes

Top 20 genes
GeneID Gene Rank
AT2G25220 10612
AT1G80870 8506
AT1G80640 7781
AT4G32000 6846
AT5G11020 5136
AT5G51770 2327
AT2G45590 1321
AT4G25390 -171

Click HERE to show all gene set members

All member genes
GeneID Gene Rank
AT2G25220 10612
AT1G80870 8506
AT1G80640 7781
AT4G32000 6846
AT5G11020 5136
AT5G51770 2327
AT2G45590 1321
AT4G25390 -171


MITOCHONDRIAL_ELECTRON_TRANSPORT_/_ATP_SYNTHESIS_F1-ATPASE

MITOCHONDRIAL_ELECTRON_TRANSPORT_/_ATP_SYNTHESIS_F1-ATPASE
159
set MITOCHONDRIAL_ELECTRON_TRANSPORT_/_ATP_SYNTHESIS_F1-ATPASE
setSize 21
pANOVA 8.01e-05
s.dist -0.497
p.adjustANOVA 0.00377



Top enriched genes

Top 20 genes
GeneID Gene Rank
ATPQ -9762
AT5G12420 -9589
YMF19 -9448
ATPC -8656
AT4G26210 -8611
ATP9 -8517
AT5G60730 -8412
AT1G51650 -8339
AT5G08680 -7873
AT5G08670 -7262
ATP6-2 -6796
ATP5 -6649
AT5G08690 -4705
AT2G07698 -2953
AT4G29480 -2692
ATP1 -2289
AT5G47030 -2142
ATP6-1 -775
AT2G19680 384
AT3G46430 861

Click HERE to show all gene set members

All member genes
GeneID Gene Rank
ATPQ -9762
AT5G12420 -9589
YMF19 -9448
ATPC -8656
AT4G26210 -8611
ATP9 -8517
AT5G60730 -8412
AT1G51650 -8339
AT5G08680 -7873
AT5G08670 -7262
ATP6-2 -6796
ATP5 -6649
AT5G08690 -4705
AT2G07698 -2953
AT4G29480 -2692
ATP1 -2289
AT5G47030 -2142
ATP6-1 -775
AT2G19680 384
AT3G46430 861
ORF25 2163


CELL_WALL_PRECURSOR_SYNTHESIS_GAE

CELL_WALL_PRECURSOR_SYNTHESIS_GAE
40
set CELL_WALL_PRECURSOR_SYNTHESIS_GAE
setSize 6
pANOVA 0.0362
s.dist 0.494
p.adjustANOVA 0.193



Top enriched genes

Top 20 genes
GeneID Gene Rank
GAE6 10245
GAE5 6651
GAE2 5845
GAE3 4953
GAE1 3436
GAE4 303

Click HERE to show all gene set members

All member genes
GeneID Gene Rank
GAE6 10245
GAE5 6651
GAE2 5845
GAE3 4953
GAE1 3436
GAE4 303


RNA_REGULATION_OF_TRANSCRIPTION_PHOR1

RNA_REGULATION_OF_TRANSCRIPTION_PHOR1
328
set RNA_REGULATION_OF_TRANSCRIPTION_PHOR1
setSize 11
pANOVA 0.00481
s.dist -0.491
p.adjustANOVA 0.0616



Top enriched genes

Top 20 genes
GeneID Gene Rank
PUB21 -10597
PUB22 -10575
PUB29 -9737
PUB25 -9571
PUB27 -4671
PUB30 -4329
PUB20 -4099
PUB28 -2812
PUB23 -2723
PUB26 -1273
PUB24 2388

Click HERE to show all gene set members

All member genes
GeneID Gene Rank
PUB21 -10597
PUB22 -10575
PUB29 -9737
PUB25 -9571
PUB27 -4671
PUB30 -4329
PUB20 -4099
PUB28 -2812
PUB23 -2723
PUB26 -1273
PUB24 2388


RNA_REGULATION_OF_TRANSCRIPTION_ARF,_AUXIN_RESPONSE_FACTOR_FAMILY

RNA_REGULATION_OF_TRANSCRIPTION_ARF,_AUXIN_RESPONSE_FACTOR_FAMILY
286
set RNA_REGULATION_OF_TRANSCRIPTION_ARF,_AUXIN_RESPONSE_FACTOR_FAMILY
setSize 15
pANOVA 0.00119
s.dist 0.483
p.adjustANOVA 0.0254



Top enriched genes

Top 20 genes
GeneID Gene Rank
ARF17 10229
ARF6 10144
ARF16 9539
ARF18 8129
ARF19 7938
ARF4 7908
ARF14 6869
ARF1 6344
ARF9 3909
ARF11 3537
ARF10 3356
ARF3 2391
ARF5 741
ARF8 145
ARF2 -4313

Click HERE to show all gene set members

All member genes
GeneID Gene Rank
ARF17 10229
ARF6 10144
ARF16 9539
ARF18 8129
ARF19 7938
ARF4 7908
ARF14 6869
ARF1 6344
ARF9 3909
ARF11 3537
ARF10 3356
ARF3 2391
ARF5 741
ARF8 145
ARF2 -4313


MISC_ALCOHOL_DEHYDROGENASES_CINNAMYL_ALCOHOL_DEHYDROGENASE

MISC_ALCOHOL_DEHYDROGENASES_CINNAMYL_ALCOHOL_DEHYDROGENASE
130
set MISC_ALCOHOL_DEHYDROGENASES_CINNAMYL_ALCOHOL_DEHYDROGENASE
setSize 6
pANOVA 0.0409
s.dist 0.482
p.adjustANOVA 0.2



Top enriched genes

Top 20 genes
GeneID Gene Rank
AT1G09510 10474
AT5G19440 9674
AT1G09500 8098
AT1G09480 4024
AT1G66800 1908
AT1G09490 -3508

Click HERE to show all gene set members

All member genes
GeneID Gene Rank
AT1G09510 10474
AT5G19440 9674
AT1G09500 8098
AT1G09480 4024
AT1G66800 1908
AT1G09490 -3508


STRESS_ABIOTIC_COLD

STRESS_ABIOTIC_COLD
402
set STRESS_ABIOTIC_COLD
setSize 17
pANOVA 0.000606
s.dist -0.48
p.adjustANOVA 0.0151



Top enriched genes

Top 20 genes
GeneID Gene Rank
LTI65 -9239
CSP2 -9078
CSP1 -8981
COR15A -8838
COR413PM1 -8673
RD29A -8491
COR15B -8251
AT1G50570 -8213
AT3G17020 -7564
AT5G55530 -6700
HOS15 -5549
AT4G15740 -4815
AT5G23950 -4019
PER3 -3546
AT3G53990 1396
AT1G04540 3305
AT3G04360 9568

Click HERE to show all gene set members

All member genes
GeneID Gene Rank
LTI65 -9239
CSP2 -9078
CSP1 -8981
COR15A -8838
COR413PM1 -8673
RD29A -8491
COR15B -8251
AT1G50570 -8213
AT3G17020 -7564
AT5G55530 -6700
HOS15 -5549
AT4G15740 -4815
AT5G23950 -4019
PER3 -3546
AT3G53990 1396
AT1G04540 3305
AT3G04360 9568


LIPID_METABOLISM_FA_DESATURATION_DESATURASE

LIPID_METABOLISM_FA_DESATURATION_DESATURASE
89
set LIPID_METABOLISM_FA_DESATURATION_DESATURASE
setSize 8
pANOVA 0.0197
s.dist 0.476
p.adjustANOVA 0.129



Top enriched genes

Top 20 genes
GeneID Gene Rank
ADS2 9095
AT1G06090 7890
AT1G06350 7403
AT1G06100 6169
ADS3 3209
AT1G06360 2660
AT1G06120 2513
ADS1 1463

Click HERE to show all gene set members

All member genes
GeneID Gene Rank
ADS2 9095
AT1G06090 7890
AT1G06350 7403
AT1G06100 6169
ADS3 3209
AT1G06360 2660
AT1G06120 2513
ADS1 1463


PROTEIN_SYNTHESIS_RIBOSOME_BIOGENESIS_PRE-RRNA_PROCESSING_AND_MODIFICATIONS_MISC

PROTEIN_SYNTHESIS_RIBOSOME_BIOGENESIS_PRE-RRNA_PROCESSING_AND_MODIFICATIONS_MISC
246
set PROTEIN_SYNTHESIS_RIBOSOME_BIOGENESIS_PRE-RRNA_PROCESSING_AND_MODIFICATIONS_MISC
setSize 9
pANOVA 0.0135
s.dist -0.475
p.adjustANOVA 0.11



Top enriched genes

Top 20 genes
GeneID Gene Rank
AAK6 -10490
EIF6-2 -8427
AT3G56510 -7839
EBP2 -7618
AT1G43860 -7341
DIM1A -6079
AT3G51270 -2437
AT5G37350 -2361
AT1G06720 6627

Click HERE to show all gene set members

All member genes
GeneID Gene Rank
AAK6 -10490
EIF6-2 -8427
AT3G56510 -7839
EBP2 -7618
AT1G43860 -7341
DIM1A -6079
AT3G51270 -2437
AT5G37350 -2361
AT1G06720 6627


RNA_REGULATION_OF_TRANSCRIPTION_CCAAT_BOX_BINDING_FACTOR_FAMILY,_HAP2

RNA_REGULATION_OF_TRANSCRIPTION_CCAAT_BOX_BINDING_FACTOR_FAMILY,_HAP2
301
set RNA_REGULATION_OF_TRANSCRIPTION_CCAAT_BOX_BINDING_FACTOR_FAMILY,_HAP2
setSize 10
pANOVA 0.0102
s.dist 0.469
p.adjustANOVA 0.102



Top enriched genes

Top 20 genes
GeneID Gene Rank
HAP2C 10586
NFYA6 10385
NFYA8 9396
NFYA5 8954
UNE8 8781
NFYA9 4312
NFYA7 2942
NFYA10 1278
NFYA4 -2319
NFYA1 -4579

Click HERE to show all gene set members

All member genes
GeneID Gene Rank
HAP2C 10586
NFYA6 10385
NFYA8 9396
NFYA5 8954
UNE8 8781
NFYA9 4312
NFYA7 2942
NFYA10 1278
NFYA4 -2319
NFYA1 -4579


PROTEIN_AA_ACTIVATION_ASPARAGINE-TRNA_LIGASE

PROTEIN_AA_ACTIVATION_ASPARAGINE-TRNA_LIGASE
197
set PROTEIN_AA_ACTIVATION_ASPARAGINE-TRNA_LIGASE
setSize 5
pANOVA 0.0694
s.dist -0.469
p.adjustANOVA 0.257



Top enriched genes

Top 20 genes
GeneID Gene Rank
SYNC1 -8593
SYNC2 -7418
NS1 -5516
SYNC3 -5328
AT5G38750 1656

Click HERE to show all gene set members

All member genes
GeneID Gene Rank
SYNC1 -8593
SYNC2 -7418
NS1 -5516
SYNC3 -5328
AT5G38750 1656


PROTEIN_SYNTHESIS_RIBOSOMAL_RNA

PROTEIN_SYNTHESIS_RIBOSOMAL_RNA
240
set PROTEIN_SYNTHESIS_RIBOSOMAL_RNA
setSize 15
pANOVA 0.00171
s.dist -0.468
p.adjustANOVA 0.0333



Top enriched genes

Top 20 genes
GeneID Gene Rank
RRN5S -9649.0
AT3G41768 -8675.0
AT2G01010 -8573.0
RRN16S.1 -7135.5
RRN16S.2 -7135.5
RRN23S.1 -6367.5
RRN23S.2 -6367.5
RRN18 -5982.0
RRN26 -4859.0
AT2G01020 -4137.5
AT3G41979 -4137.5
RRN4.5S.1 -3691.5
RRN4.5S.2 -3691.5
RRN5 2192.0
AT2G37990 2839.0

Click HERE to show all gene set members

All member genes
GeneID Gene Rank
RRN5S -9649.0
AT3G41768 -8675.0
AT2G01010 -8573.0
RRN16S.1 -7135.5
RRN16S.2 -7135.5
RRN23S.1 -6367.5
RRN23S.2 -6367.5
RRN18 -5982.0
RRN26 -4859.0
AT2G01020 -4137.5
AT3G41979 -4137.5
RRN4.5S.1 -3691.5
RRN4.5S.2 -3691.5
RRN5 2192.0
AT2G37990 2839.0


SECONDARY_METABOLISM_FLAVONOIDS_ISOFLAVONES_ISOFLAVONE_REDUCTASE

SECONDARY_METABOLISM_FLAVONOIDS_ISOFLAVONES_ISOFLAVONE_REDUCTASE
350
set SECONDARY_METABOLISM_FLAVONOIDS_ISOFLAVONES_ISOFLAVONE_REDUCTASE
setSize 7
pANOVA 0.036
s.dist -0.458
p.adjustANOVA 0.193



Top enriched genes

Top 20 genes
GeneID Gene Rank
AT1G75280 -10053
PRR2 -9925
AT1G75300 -8629
PLR3 -7415
AT1G19540 -4427
PCBER1 -988
AT1G75290 7007

Click HERE to show all gene set members

All member genes
GeneID Gene Rank
AT1G75280 -10053
PRR2 -9925
AT1G75300 -8629
PLR3 -7415
AT1G19540 -4427
PCBER1 -988
AT1G75290 7007


CELL_WALL_CELL_WALL_PROTEINS_AGPS_AGP

CELL_WALL_CELL_WALL_PROTEINS_AGPS_AGP
30
set CELL_WALL_CELL_WALL_PROTEINS_AGPS_AGP
setSize 39
pANOVA 1.08e-06
s.dist 0.451
p.adjustANOVA 0.000121



Top enriched genes

Top 20 genes
GeneID Gene Rank
AGP16 10334
AGP17 10327
AGP25 10181
AT4G16980 10148
AGP4 10009
FLA17 9830
FLA7 9806
FLA8 9687
FLA4 9677
AGP18 9469
AGP26 9441
AGP7 9329
AGP27 9273
FLA2 9271
FLA13 9240
FLA18 9079
AGP9 8090
FLA9 7428
AGP21 7251
FLA1 6715

Click HERE to show all gene set members

All member genes
GeneID Gene Rank
AGP16 10334
AGP17 10327
AGP25 10181
AT4G16980 10148
AGP4 10009
FLA17 9830
FLA7 9806
FLA8 9687
FLA4 9677
AGP18 9469
AGP26 9441
AGP7 9329
AGP27 9273
FLA2 9271
FLA13 9240
FLA18 9079
AGP9 8090
FLA9 7428
AGP21 7251
FLA1 6715
AGP19 6351
FLA15 6139
APG 5249
AGP2 4908
AGP22 3446
AGP10 2129
FLA12 1997
AGP12 1602
AGP14 1080
FLA10 784
FLA11 743
AGP24 74
AGP13 -2204
AGP20 -2385
AGP3 -2928
AGP1 -3625
AGP40 -6507
AGP5 -6758
FLA5 -8419


MITOCHONDRIAL_ELECTRON_TRANSPORT_/_ATP_SYNTHESIS_CYTOCHROME_C_REDUCTASE

MITOCHONDRIAL_ELECTRON_TRANSPORT_/_ATP_SYNTHESIS_CYTOCHROME_C_REDUCTASE
158
set MITOCHONDRIAL_ELECTRON_TRANSPORT_/_ATP_SYNTHESIS_CYTOCHROME_C_REDUCTASE
setSize 10
pANOVA 0.0138
s.dist -0.45
p.adjustANOVA 0.11



Top enriched genes

Top 20 genes
GeneID Gene Rank
AT3G10860 -10505
AT1G36380 -9502
AT5G05370 -8522
UCR1-2 -7571
AT3G52730 -5165
QCR7-2 -4410
QCR7-1 -4354
AT1G15120 -2022
AT2G07727 -1978
UCR1-1 5712

Click HERE to show all gene set members

All member genes
GeneID Gene Rank
AT3G10860 -10505
AT1G36380 -9502
AT5G05370 -8522
UCR1-2 -7571
AT3G52730 -5165
QCR7-2 -4410
QCR7-1 -4354
AT1G15120 -2022
AT2G07727 -1978
UCR1-1 5712


PROTEIN_POSTRANSLATIONAL_MODIFICATION_KINASE

PROTEIN_POSTRANSLATIONAL_MODIFICATION_KINASE
222
set PROTEIN_POSTRANSLATIONAL_MODIFICATION_KINASE
setSize 21
pANOVA 0.000507
s.dist 0.438
p.adjustANOVA 0.0151



Top enriched genes

Top 20 genes
GeneID Gene Rank
AT3G24715 9930
MHK 9919
AT1G49180 9698
AT2G42640 9605
ATMKK2 9546
ATSK42 8995
ATNEK4 8622
NET2D 8074
AT1G54610 7703
ATM 7156
AT5G57565 6648
CKB3 6265
AT3G01090 5777
PTST 4699
CPK28 2982
AT4G11890 -372
CDKG1 -1595
WNK1 -2096
AT4G11845 -2296
SRK2E -5486

Click HERE to show all gene set members

All member genes
GeneID Gene Rank
AT3G24715 9930
MHK 9919
AT1G49180 9698
AT2G42640 9605
ATMKK2 9546
ATSK42 8995
ATNEK4 8622
NET2D 8074
AT1G54610 7703
ATM 7156
AT5G57565 6648
CKB3 6265
AT3G01090 5777
PTST 4699
CPK28 2982
AT4G11890 -372
CDKG1 -1595
WNK1 -2096
AT4G11845 -2296
SRK2E -5486
AtAUR2 -6283


PS_CALVIN_CYCLE_RUBISCO_INTERACTING

PS_CALVIN_CYCLE_RUBISCO_INTERACTING
259
set PS_CALVIN_CYCLE_RUBISCO_INTERACTING
setSize 6
pANOVA 0.0635
s.dist 0.437
p.adjustANOVA 0.243



Top enriched genes

Top 20 genes
GeneID Gene Rank
PTAC14 9917
CPN60B1 6960
AT1G73110 5231
CPN60A1 5110
LSMT-L 4459
RCA -3854

Click HERE to show all gene set members

All member genes
GeneID Gene Rank
PTAC14 9917
CPN60B1 6960
AT1G73110 5231
CPN60A1 5110
LSMT-L 4459
RCA -3854


NUCLEOTIDE_METABOLISM_SALVAGE_PHOSPHORIBOSYLTRANSFERASES_UPP

NUCLEOTIDE_METABOLISM_SALVAGE_PHOSPHORIBOSYLTRANSFERASES_UPP
191
set NUCLEOTIDE_METABOLISM_SALVAGE_PHOSPHORIBOSYLTRANSFERASES_UPP
setSize 5
pANOVA 0.0931
s.dist 0.434
p.adjustANOVA 0.302



Top enriched genes

Top 20 genes
GeneID Gene Rank
UKL2 9991
UKL1 8614
UKL4 4507
UPP 3131
UKL3 -3256

Click HERE to show all gene set members

All member genes
GeneID Gene Rank
UKL2 9991
UKL1 8614
UKL4 4507
UPP 3131
UKL3 -3256


N-METABOLISM_AMMONIA_METABOLISM_GLUTAMINE_SYNTHETASE

N-METABOLISM_AMMONIA_METABOLISM_GLUTAMINE_SYNTHETASE
162
set N-METABOLISM_AMMONIA_METABOLISM_GLUTAMINE_SYNTHETASE
setSize 6
pANOVA 0.0686
s.dist 0.429
p.adjustANOVA 0.257



Top enriched genes

Top 20 genes
GeneID Gene Rank
GLN1-4 10305
ATGSR2 8930
GLN1-1 8468
AT3G53180 5320
GLN1-3 3842
GLN2 -9566

Click HERE to show all gene set members

All member genes
GeneID Gene Rank
GLN1-4 10305
ATGSR2 8930
GLN1-1 8468
AT3G53180 5320
GLN1-3 3842
GLN2 -9566


SIGNALLING_RECEPTOR_KINASES_LEGUME-LECTIN

SIGNALLING_RECEPTOR_KINASES_LEGUME-LECTIN
381
set SIGNALLING_RECEPTOR_KINASES_LEGUME-LECTIN
setSize 10
pANOVA 0.0188
s.dist -0.429
p.adjustANOVA 0.128



Top enriched genes

Top 20 genes
GeneID Gene Rank
AT3G08870 -8898
AT5G06740 -8858
LECRKS2 -8421
LECRK71 -8118
LECRKS7 -7820
LECRK42 -6021
LECRK44 -5182
LECRK43 -4262
LECRK55 5220
AT4G29050 6239

Click HERE to show all gene set members

All member genes
GeneID Gene Rank
AT3G08870 -8898
AT5G06740 -8858
LECRKS2 -8421
LECRK71 -8118
LECRKS7 -7820
LECRK42 -6021
LECRK44 -5182
LECRK43 -4262
LECRK55 5220
AT4G29050 6239


RNA_REGULATION_OF_TRANSCRIPTION_B3_TRANSCRIPTION_FACTOR_FAMILY

RNA_REGULATION_OF_TRANSCRIPTION_B3_TRANSCRIPTION_FACTOR_FAMILY
291
set RNA_REGULATION_OF_TRANSCRIPTION_B3_TRANSCRIPTION_FACTOR_FAMILY
setSize 27
pANOVA 0.000125
s.dist 0.426
p.adjustANOVA 0.00501



Top enriched genes

Top 20 genes
GeneID Gene Rank
AT1G16640 10541
AT4G34400 9730
AT2G24645 9669
REM1 8959
AT3G17010 8791
AT2G35310 8503
REM20 8296
AT5G46915 7673
AT3G06220 6859
REM2 6429
AT1G49475 5711
AT2G24690 4940
REM5 4823
AT4G31620 4759
AT2G24680 4351
AT3G18960 3839
REM13 3626
AT4G01580 3430
REM10 3238
AT5G60142 2735

Click HERE to show all gene set members

All member genes
GeneID Gene Rank
AT1G16640 10541
AT4G34400 9730
AT2G24645 9669
REM1 8959
AT3G17010 8791
AT2G35310 8503
REM20 8296
AT5G46915 7673
AT3G06220 6859
REM2 6429
AT1G49475 5711
AT2G24690 4940
REM5 4823
AT4G31620 4759
AT2G24680 4351
AT3G18960 3839
REM13 3626
AT4G01580 3430
REM10 3238
AT5G60142 2735
REM19 2553
AT3G06160 1816
AT1G26680 1235
AT5G32460 -172
REM22 -573
AT4G31650 -4628
VRN1 -5213


TRANSPORT_SUGARS_SUCROSE

TRANSPORT_SUGARS_SUCROSE
445
set TRANSPORT_SUGARS_SUCROSE
setSize 7
pANOVA 0.0511
s.dist 0.426
p.adjustANOVA 0.227



Top enriched genes

Top 20 genes
GeneID Gene Rank
SUC1 10483
SUC7 10050
SUC2 8297
SUC6 7959
SUC3 7740
SUC5 -5953
SUC4 -6990

Click HERE to show all gene set members

All member genes
GeneID Gene Rank
SUC1 10483
SUC7 10050
SUC2 8297
SUC6 7959
SUC3 7740
SUC5 -5953
SUC4 -6990


AMINO_ACID_METABOLISM_DEGRADATION_SERINE-GLYCINE-CYSTEINE_GROUP_GLYCINE

AMINO_ACID_METABOLISM_DEGRADATION_SERINE-GLYCINE-CYSTEINE_GROUP_GLYCINE
5
set AMINO_ACID_METABOLISM_DEGRADATION_SERINE-GLYCINE-CYSTEINE_GROUP_GLYCINE
setSize 5
pANOVA 0.104
s.dist -0.42
p.adjustANOVA 0.313



Top enriched genes

Top 20 genes
GeneID Gene Rank
HPR -9122
AT1G11860 -5887
AT1G72190 -4194
THA2 -2997
THA1 -395

Click HERE to show all gene set members

All member genes
GeneID Gene Rank
HPR -9122
AT1G11860 -5887
AT1G72190 -4194
THA2 -2997
THA1 -395


MISC_OXYGENASES

MISC_OXYGENASES
149
set MISC_OXYGENASES
setSize 5
pANOVA 0.104
s.dist -0.42
p.adjustANOVA 0.313



Top enriched genes

Top 20 genes
GeneID Gene Rank
AT1G22950 -7486
AT3G18210 -6828
ALKBH9B -5246
AT1G52790 -1902
PAHX -1125

Click HERE to show all gene set members

All member genes
GeneID Gene Rank
AT1G22950 -7486
AT3G18210 -6828
ALKBH9B -5246
AT1G52790 -1902
PAHX -1125


MAJOR_CHO_METABOLISM_DEGRADATION_SUCROSE_HEXOKINASE

MAJOR_CHO_METABOLISM_DEGRADATION_SUCROSE_HEXOKINASE
114
set MAJOR_CHO_METABOLISM_DEGRADATION_SUCROSE_HEXOKINASE
setSize 5
pANOVA 0.104
s.dist -0.42
p.adjustANOVA 0.313



Top enriched genes

Top 20 genes
GeneID Gene Rank
ATHXK4 -8291
HXK1 -8184
HKL1 -6246
HXK2 -3097
HXK3 3248

Click HERE to show all gene set members

All member genes
GeneID Gene Rank
ATHXK4 -8291
HXK1 -8184
HKL1 -6246
HXK2 -3097
HXK3 3248


NOT_ASSIGNED_NO_ONTOLOGY_PAIRED_AMPHIPATHIC_HELIX_REPEAT-CONTAINING_PROTEIN

NOT_ASSIGNED_NO_ONTOLOGY_PAIRED_AMPHIPATHIC_HELIX_REPEAT-CONTAINING_PROTEIN
177
set NOT_ASSIGNED_NO_ONTOLOGY_PAIRED_AMPHIPATHIC_HELIX_REPEAT-CONTAINING_PROTEIN
setSize 6
pANOVA 0.077
s.dist 0.417
p.adjustANOVA 0.272



Top enriched genes

Top 20 genes
GeneID Gene Rank
SNL4 10551
SNL3 9583
SNL1 9508
SNL6 3652
AT1G24210 -1767
AT1G27280 -5019

Click HERE to show all gene set members

All member genes
GeneID Gene Rank
SNL4 10551
SNL3 9583
SNL1 9508
SNL6 3652
AT1G24210 -1767
AT1G27280 -5019


Here is the session info with all the versions of packages used.

sessionInfo()
## R version 4.0.3 (2020-10-10)
## Platform: x86_64-pc-linux-gnu (64-bit)
## Running under: Ubuntu 20.04.2 LTS
## 
## Matrix products: default
## BLAS:   /usr/lib/x86_64-linux-gnu/blas/libblas.so.3.9.0
## LAPACK: /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3.9.0
## 
## locale:
##  [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C              
##  [3] LC_TIME=en_US.UTF-8        LC_COLLATE=en_US.UTF-8    
##  [5] LC_MONETARY=en_US.UTF-8    LC_MESSAGES=en_US.UTF-8   
##  [7] LC_PAPER=en_US.UTF-8       LC_NAME=C                 
##  [9] LC_ADDRESS=C               LC_TELEPHONE=C            
## [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C       
## 
## attached base packages:
## [1] parallel  stats4    stats     graphics  grDevices utils     datasets 
## [8] methods   base     
## 
## other attached packages:
##  [1] pkgload_1.2.0               GGally_2.1.1               
##  [3] ggplot2_3.3.3               beeswarm_0.3.1             
##  [5] gtools_3.8.2                tibble_3.1.0               
##  [7] dplyr_1.0.5                 echarts4r_0.4.0            
##  [9] vioplot_0.3.5               zoo_1.8-9                  
## [11] sm_2.2-5.6                  UpSetR_1.4.0               
## [13] eulerr_6.1.0                kableExtra_1.3.4           
## [15] mitch_1.2.2                 DESeq2_1.30.0              
## [17] SummarizedExperiment_1.20.0 Biobase_2.50.0             
## [19] MatrixGenerics_1.2.0        matrixStats_0.58.0         
## [21] GenomicRanges_1.42.0        GenomeInfoDb_1.26.0        
## [23] IRanges_2.24.0              S4Vectors_0.28.0           
## [25] BiocGenerics_0.36.0         gplots_3.1.1               
## [27] reshape2_1.4.4             
## 
## loaded via a namespace (and not attached):
##  [1] colorspace_2.0-0       ellipsis_0.3.1         rprojroot_2.0.2       
##  [4] XVector_0.30.0         rstudioapi_0.13        bit64_4.0.5           
##  [7] AnnotationDbi_1.52.0   fansi_0.4.2            xml2_1.3.2            
## [10] splines_4.0.3          cachem_1.0.4           geneplotter_1.68.0    
## [13] knitr_1.31             polyclip_1.10-0        jsonlite_1.7.2        
## [16] annotate_1.68.0        shiny_1.6.0            compiler_4.0.3        
## [19] httr_1.4.2             assertthat_0.2.1       Matrix_1.3-2          
## [22] fastmap_1.1.0          later_1.1.0.1          htmltools_0.5.1.1     
## [25] tools_4.0.3            gtable_0.3.0           glue_1.4.2            
## [28] GenomeInfoDbData_1.2.4 Rcpp_1.0.6             jquerylib_0.1.3       
## [31] vctrs_0.3.6            svglite_2.0.0          polylabelr_0.2.0      
## [34] xfun_0.22              stringr_1.4.0          testthat_3.0.2        
## [37] rvest_1.0.0            mime_0.10              lifecycle_1.0.0       
## [40] XML_3.99-0.6           zlibbioc_1.36.0        MASS_7.3-53.1         
## [43] scales_1.1.1           promises_1.2.0.1       RColorBrewer_1.1-2    
## [46] yaml_2.2.1             memoise_2.0.0          gridExtra_2.3         
## [49] sass_0.3.1             reshape_0.8.8          stringi_1.5.3         
## [52] RSQLite_2.2.4          highr_0.8              genefilter_1.72.0     
## [55] desc_1.3.0             caTools_1.18.1         BiocParallel_1.24.1   
## [58] rlang_0.4.10           pkgconfig_2.0.3        systemfonts_1.0.1     
## [61] bitops_1.0-6           evaluate_0.14          lattice_0.20-41       
## [64] purrr_0.3.4            htmlwidgets_1.5.3      bit_4.0.4             
## [67] tidyselect_1.1.0       plyr_1.8.6             magrittr_2.0.1        
## [70] R6_2.5.0               generics_0.1.0         DelayedArray_0.16.0   
## [73] DBI_1.1.1              withr_2.4.1            pillar_1.5.1          
## [76] survival_3.2-10        RCurl_1.98-1.3         crayon_1.4.1          
## [79] KernSmooth_2.23-18     utf8_1.2.1             rmarkdown_2.7         
## [82] locfit_1.5-9.4         grid_4.0.3             blob_1.2.1            
## [85] digest_0.6.27          webshot_0.5.2          xtable_1.8-4          
## [88] httpuv_1.5.5           munsell_0.5.0          viridisLite_0.3.0     
## [91] bslib_0.2.4            tcltk_4.0.3

END of report