date generated: 2021-03-25

Background

Mitch performs unidimensional and multidimensional gene set enrichment analysis. The concept behind this dates to work by Cox and Mann (https://doi.org/10.1186/1471-2105-13-S16-S12). This implementation is suited to R based workflows of multi-omics datasets. This software was developed by Antony Kaspi and Mark Ziemann. Learn more about Mitch at the website: https://github.com/markziemann/Mitch

Input profiles

Here is the first few lines of the input profile.

##                       x
## 1MMP        -0.06107556
## 2-Cys        0.73109293
## 2A6          2.58510884
## 2MMP        -2.37940783
## 3AT1        -0.29989906
## 3BETAHSD/D1  2.11566572
Here are some metrics about the input data profile:
Profile metrics
Profile metrics
num_genesets 959
num_genes_in_profile 21486
duplicated_genes_present 0
num_profile_genes_in_sets 20476
num_profile_genes_not_in_sets 1010

Here is a plot of the input profiles. Note the dynamic ranges.

Here is the contour plot of the profile including all detected genes.

Input genesets

Here are some metrics about the gene sets used: GMT file of genesets: ../baseline/ref/Ath_AGI_LOCUS_TAIR10_Aug2012.txt.gmt
Gene sets metrics
Gene sets metrics
num_genesets 959
num_genesets_excluded 693
num_genesets_included 266

Differential pathway expression


Interactive enrichment scatterplot

Significance is calculated by -log10(p-value). All points shown are FDR<0.05.

Significance is calculated by -log10(p-value). Top N sets shown irrespective of FDR.

Results table

Top N= 50 gene sets
set setSize pANOVA s.dist p.adjustANOVA
PS LIGHTREACTION PHOTOSYSTEM II LHC-II 14 1.82e-07 -0.805 1.62e-05
PS LIGHTREACTION PHOTOSYSTEM I PSI POLYPEPTIDE SUBUNITS 16 3.05e-08 -0.799 3.39e-06
TRANSPORT SULPHATE 12 7.83e-06 -0.745 3.16e-04
AMINO ACID METABOLISM DEGRADATION BRANCHED CHAIN GROUP SHARED 7 7.35e-04 -0.737 1.12e-02
PS LIGHTREACTION NADH DH 11 9.83e-05 -0.678 3.12e-03
SIGNALLING RECEPTOR KINASES LEUCINE RICH REPEAT VI 10 2.16e-04 0.676 5.04e-03
CELL WALL PRECURSOR SYNTHESIS GAE 6 5.20e-03 0.659 4.37e-02
PS LIGHTREACTION PHOTOSYSTEM II PSII POLYPEPTIDE SUBUNITS 33 6.07e-11 -0.658 8.99e-09
SIGNALLING RECEPTOR KINASES LEUCINE RICH REPEAT VIII VIII-1 9 7.04e-04 0.652 1.12e-02
NOT ASSIGNED NO ONTOLOGY TOLL-INTERLEUKIN-RESISTANCE (TIR) DOMAIN-CONTAINING PROTEIN 7 3.66e-03 0.634 3.53e-02
PS LIGHTREACTION CYCLIC ELECTRON FLOW-CHLORORESPIRATION 9 9.91e-04 -0.634 1.26e-02
LIPID METABOLISM FA SYNTHESIS AND FA ELONGATION ACP DESATURASE 7 4.36e-03 0.622 4.00e-02
TRANSPORT AMMONIUM 7 4.77e-03 0.616 4.15e-02
CELL WALL CELLULOSE SYNTHESIS 12 2.73e-04 0.607 5.81e-03
PROTEIN SYNTHESIS RIBOSOMAL RNA 12 2.75e-04 -0.606 5.81e-03
AMINO ACID METABOLISM DEGRADATION SERINE-GLYCINE-CYSTEINE GROUP GLYCINE 5 2.07e-02 -0.598 1.12e-01
SIGNALLING RECEPTOR KINASES LEUCINE RICH REPEAT X 12 3.43e-04 0.597 6.92e-03
SIGNALLING RECEPTOR KINASES LEUCINE RICH REPEAT I 19 7.42e-06 0.594 3.16e-04
BIODEGRADATION OF XENOBIOTICS LACTOYLGLUTATHIONE LYASE 9 2.49e-03 -0.582 2.57e-02
TRANSPORT P- AND V-ATPASES H+-TRANSPORTING TWO-SECTOR ATPASE 7 8.30e-03 0.576 6.58e-02
CELL WALL HEMICELLULOSE SYNTHESIS GLUCURONOXYLAN 9 2.79e-03 0.576 2.75e-02
SIGNALLING RECEPTOR KINASES LEUCINE RICH REPEAT V 8 5.22e-03 0.570 4.37e-02
AMINO ACID METABOLISM MISC 5 2.91e-02 0.564 1.36e-01
CELL WALL PRECURSOR SYNTHESIS UXS 6 2.20e-02 0.540 1.15e-01
RNA REGULATION OF TRANSCRIPTION ARF, AUXIN RESPONSE FACTOR FAMILY 16 1.90e-04 0.539 4.68e-03
LIPID METABOLISM LIPID TRANSFER PROTEINS ETC 13 8.14e-04 -0.536 1.13e-02
CELL WALL CELLULOSE SYNTHESIS COBRA 7 1.44e-02 0.534 9.15e-02
PS LIGHTREACTION PHOTOSYSTEM I LHC-I 7 1.44e-02 -0.534 9.15e-02
NOT ASSIGNED NO ONTOLOGY LATE EMBRYOGENESIS ABUNDANT DOMAIN-CONTAINING PROTEIN 6 2.46e-02 -0.530 1.26e-01
RNA REGULATION OF TRANSCRIPTION NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP 13 1.08e-03 -0.524 1.33e-02
STRESS BIOTIC RESPIRATORY BURST 8 1.07e-02 0.521 8.02e-02
PROTEIN POSTRANSLATIONAL MODIFICATION KINASE RECEPTOR LIKE CYTOPLASMATIC KINASE II 5 4.39e-02 0.520 1.68e-01
AMINO ACID METABOLISM DEGRADATION AROMATIC AA TYROSINE 7 1.89e-02 -0.513 1.09e-01
PROTEIN POSTRANSLATIONAL MODIFICATION KINASE RECEPTOR LIKE CYTOPLASMATIC KINASE V 8 1.26e-02 0.509 8.74e-02
SECONDARY METABOLISM PHENYLPROPANOIDS LIGNIN BIOSYNTHESIS CAD 8 1.32e-02 -0.506 8.74e-02
SECONDARY METABOLISM PHENYLPROPANOIDS LIGNIN BIOSYNTHESIS CCR1 5 5.55e-02 -0.494 1.81e-01
AMINO ACID METABOLISM SYNTHESIS CENTRAL AMINO ACID METABOLISM GABA GLUTAMATE DECARBOXYLASE 5 5.73e-02 0.491 1.84e-01
CELL CELL DEATH PLANTS 6 3.89e-02 -0.487 1.61e-01
SECONDARY METABOLISM FLAVONOIDS FLAVONOLS 8 1.73e-02 0.486 1.02e-01
SECONDARY METABOLISM SIMPLE PHENOLS 16 8.08e-04 0.484 1.13e-02
CELL WALL DEGRADATION CELLULASES AND BETA -1,4-GLUCANASES 9 1.26e-02 0.480 8.74e-02
HORMONE METABOLISM GIBBERELIN SIGNAL TRANSDUCTION 8 1.87e-02 0.480 1.09e-01
TCA / ORG TRANSFORMATION OTHER ORGANIC ACID TRANSFORMATONS ATP-CITRATE LYASE 5 6.46e-02 0.477 1.96e-01
NOT ASSIGNED NO ONTOLOGY DC1 DOMAIN CONTAINING PROTEIN 108 3.09e-17 0.470 1.37e-14
SIGNALLING PHOSPHINOSITIDES PHOSPHOINOSITIDE PHOSPHOLIPASE C 9 1.54e-02 0.466 9.64e-02
SECONDARY METABOLISM PHENYLPROPANOIDS LIGNIN BIOSYNTHESIS 4CL 7 3.28e-02 0.466 1.52e-01
PS CALVIN CYCLE RUBISCO INTERACTING 6 4.81e-02 -0.466 1.72e-01
LIPID METABOLISM PHOSPHOLIPID SYNTHESIS DIACYLGLYCEROL KINASE 6 5.07e-02 0.461 1.77e-01
NOT ASSIGNED NO ONTOLOGY EPSIN N-TERMINAL HOMOLOGY (ENTH) DOMAIN-CONTAINING PROTEIN 18 7.20e-04 0.460 1.12e-02
LIPID METABOLISM EXOTICS (STEROIDS, SQUALENE ETC) SPHINGOLIPIDS 20 4.06e-04 0.457 7.84e-03


Results (complete table)


Click HERE to show results for all gene sets

Complete results
set setSize pANOVA s.dist p.adjustANOVA
PS LIGHTREACTION PHOTOSYSTEM II LHC-II 14 1.82e-07 -0.805000 1.62e-05
PS LIGHTREACTION PHOTOSYSTEM I PSI POLYPEPTIDE SUBUNITS 16 3.05e-08 -0.799000 3.39e-06
TRANSPORT SULPHATE 12 7.83e-06 -0.745000 3.16e-04
AMINO ACID METABOLISM DEGRADATION BRANCHED CHAIN GROUP SHARED 7 7.35e-04 -0.737000 1.12e-02
PS LIGHTREACTION NADH DH 11 9.83e-05 -0.678000 3.12e-03
SIGNALLING RECEPTOR KINASES LEUCINE RICH REPEAT VI 10 2.16e-04 0.676000 5.04e-03
CELL WALL PRECURSOR SYNTHESIS GAE 6 5.20e-03 0.659000 4.37e-02
PS LIGHTREACTION PHOTOSYSTEM II PSII POLYPEPTIDE SUBUNITS 33 6.07e-11 -0.658000 8.99e-09
SIGNALLING RECEPTOR KINASES LEUCINE RICH REPEAT VIII VIII-1 9 7.04e-04 0.652000 1.12e-02
NOT ASSIGNED NO ONTOLOGY TOLL-INTERLEUKIN-RESISTANCE (TIR) DOMAIN-CONTAINING PROTEIN 7 3.66e-03 0.634000 3.53e-02
PS LIGHTREACTION CYCLIC ELECTRON FLOW-CHLORORESPIRATION 9 9.91e-04 -0.634000 1.26e-02
LIPID METABOLISM FA SYNTHESIS AND FA ELONGATION ACP DESATURASE 7 4.36e-03 0.622000 4.00e-02
TRANSPORT AMMONIUM 7 4.77e-03 0.616000 4.15e-02
CELL WALL CELLULOSE SYNTHESIS 12 2.73e-04 0.607000 5.81e-03
PROTEIN SYNTHESIS RIBOSOMAL RNA 12 2.75e-04 -0.606000 5.81e-03
AMINO ACID METABOLISM DEGRADATION SERINE-GLYCINE-CYSTEINE GROUP GLYCINE 5 2.07e-02 -0.598000 1.12e-01
SIGNALLING RECEPTOR KINASES LEUCINE RICH REPEAT X 12 3.43e-04 0.597000 6.92e-03
SIGNALLING RECEPTOR KINASES LEUCINE RICH REPEAT I 19 7.42e-06 0.594000 3.16e-04
BIODEGRADATION OF XENOBIOTICS LACTOYLGLUTATHIONE LYASE 9 2.49e-03 -0.582000 2.57e-02
TRANSPORT P- AND V-ATPASES H+-TRANSPORTING TWO-SECTOR ATPASE 7 8.30e-03 0.576000 6.58e-02
CELL WALL HEMICELLULOSE SYNTHESIS GLUCURONOXYLAN 9 2.79e-03 0.576000 2.75e-02
SIGNALLING RECEPTOR KINASES LEUCINE RICH REPEAT V 8 5.22e-03 0.570000 4.37e-02
AMINO ACID METABOLISM MISC 5 2.91e-02 0.564000 1.36e-01
CELL WALL PRECURSOR SYNTHESIS UXS 6 2.20e-02 0.540000 1.15e-01
RNA REGULATION OF TRANSCRIPTION ARF, AUXIN RESPONSE FACTOR FAMILY 16 1.90e-04 0.539000 4.68e-03
LIPID METABOLISM LIPID TRANSFER PROTEINS ETC 13 8.14e-04 -0.536000 1.13e-02
CELL WALL CELLULOSE SYNTHESIS COBRA 7 1.44e-02 0.534000 9.15e-02
PS LIGHTREACTION PHOTOSYSTEM I LHC-I 7 1.44e-02 -0.534000 9.15e-02
NOT ASSIGNED NO ONTOLOGY LATE EMBRYOGENESIS ABUNDANT DOMAIN-CONTAINING PROTEIN 6 2.46e-02 -0.530000 1.26e-01
RNA REGULATION OF TRANSCRIPTION NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP 13 1.08e-03 -0.524000 1.33e-02
STRESS BIOTIC RESPIRATORY BURST 8 1.07e-02 0.521000 8.02e-02
PROTEIN POSTRANSLATIONAL MODIFICATION KINASE RECEPTOR LIKE CYTOPLASMATIC KINASE II 5 4.39e-02 0.520000 1.68e-01
AMINO ACID METABOLISM DEGRADATION AROMATIC AA TYROSINE 7 1.89e-02 -0.513000 1.09e-01
PROTEIN POSTRANSLATIONAL MODIFICATION KINASE RECEPTOR LIKE CYTOPLASMATIC KINASE V 8 1.26e-02 0.509000 8.74e-02
SECONDARY METABOLISM PHENYLPROPANOIDS LIGNIN BIOSYNTHESIS CAD 8 1.32e-02 -0.506000 8.74e-02
SECONDARY METABOLISM PHENYLPROPANOIDS LIGNIN BIOSYNTHESIS CCR1 5 5.55e-02 -0.494000 1.81e-01
AMINO ACID METABOLISM SYNTHESIS CENTRAL AMINO ACID METABOLISM GABA GLUTAMATE DECARBOXYLASE 5 5.73e-02 0.491000 1.84e-01
CELL CELL DEATH PLANTS 6 3.89e-02 -0.487000 1.61e-01
SECONDARY METABOLISM FLAVONOIDS FLAVONOLS 8 1.73e-02 0.486000 1.02e-01
SECONDARY METABOLISM SIMPLE PHENOLS 16 8.08e-04 0.484000 1.13e-02
CELL WALL DEGRADATION CELLULASES AND BETA -1,4-GLUCANASES 9 1.26e-02 0.480000 8.74e-02
HORMONE METABOLISM GIBBERELIN SIGNAL TRANSDUCTION 8 1.87e-02 0.480000 1.09e-01
TCA / ORG TRANSFORMATION OTHER ORGANIC ACID TRANSFORMATONS ATP-CITRATE LYASE 5 6.46e-02 0.477000 1.96e-01
NOT ASSIGNED NO ONTOLOGY DC1 DOMAIN CONTAINING PROTEIN 108 3.09e-17 0.470000 1.37e-14
SIGNALLING PHOSPHINOSITIDES PHOSPHOINOSITIDE PHOSPHOLIPASE C 9 1.54e-02 0.466000 9.64e-02
SECONDARY METABOLISM PHENYLPROPANOIDS LIGNIN BIOSYNTHESIS 4CL 7 3.28e-02 0.466000 1.52e-01
PS CALVIN CYCLE RUBISCO INTERACTING 6 4.81e-02 -0.466000 1.72e-01
LIPID METABOLISM PHOSPHOLIPID SYNTHESIS DIACYLGLYCEROL KINASE 6 5.07e-02 0.461000 1.77e-01
NOT ASSIGNED NO ONTOLOGY EPSIN N-TERMINAL HOMOLOGY (ENTH) DOMAIN-CONTAINING PROTEIN 18 7.20e-04 0.460000 1.12e-02
LIPID METABOLISM EXOTICS (STEROIDS, SQUALENE ETC) SPHINGOLIPIDS 20 4.06e-04 0.457000 7.84e-03
PROTEIN SYNTHESIS RELEASE 10 1.25e-02 -0.456000 8.74e-02
CELL WALL CELL WALL PROTEINS AGPS AGP 39 8.35e-07 0.456000 5.30e-05
PROTEIN SYNTHESIS RIBOSOMAL PROTEIN PROKARYOTIC CHLOROPLAST 50S SUBUNIT L12 6 5.45e-02 -0.453000 1.79e-01
OPP OXIDATIVE PP 6-PHOSPHOGLUCONATE DEHYDROGENASE 7 3.93e-02 0.450000 1.61e-01
PROTEIN ASSEMBLY AND COFACTOR LIGATION 20 5.33e-04 -0.447000 9.35e-03
PS LIGHTREACTION OTHER ELECTRON CARRIER (OX/RED) FERREDOXIN 6 5.97e-02 -0.444000 1.87e-01
SECONDARY METABOLISM FLAVONOIDS ISOFLAVONES ISOFLAVONE REDUCTASE 7 4.24e-02 -0.443000 1.65e-01
PROTEIN POSTRANSLATIONAL MODIFICATION KINASE RECEPTOR LIKE CYTOPLASMATIC KINASE X 8 3.54e-02 0.429000 1.56e-01
MISC OXYGENASES 5 9.64e-02 -0.429000 2.73e-01
SIGNALLING RECEPTOR KINASES LEUCINE RICH REPEAT III 41 2.29e-06 0.426000 1.27e-04
PROTEIN POSTRANSLATIONAL MODIFICATION KINASE RECEPTOR LIKE CYTOPLASMATIC KINASE VIII 10 2.08e-02 0.422000 1.12e-01
MAJOR CHO METABOLISM DEGRADATION SUCROSE INVERTASES NEUTRAL 8 3.89e-02 -0.422000 1.61e-01
LIPID METABOLISM PHOSPHOLIPID SYNTHESIS PHOSPHATIDATE CYTIDYLYLTRANSFERASE 7 5.63e-02 0.417000 1.82e-01
LIPID METABOLISM EXOTICS (STEROIDS, SQUALENE ETC) PHOSPHATIDYLCHOLINESTEROL O-ACYLTRANSFERASE 5 1.07e-01 0.416000 2.98e-01
SIGNALLING RECEPTOR KINASES S-LOCUS GLYCOPROTEIN LIKE 20 1.35e-03 -0.414000 1.62e-02
RNA REGULATION OF TRANSCRIPTION NIN-LIKE BZIP-RELATED FAMILY 7 5.82e-02 0.413000 1.86e-01
TRANSPORT NDP-SUGARS AT THE ER 7 5.95e-02 0.411000 1.87e-01
PROTEIN SYNTHESIS RIBOSOME BIOGENESIS PRE-RRNA PROCESSING AND MODIFICATIONS MISC 9 3.54e-02 -0.405000 1.56e-01
SIGNALLING RECEPTOR KINASES LEUCINE RICH REPEAT II 13 1.22e-02 0.401000 8.74e-02
LIPID METABOLISM LIPID DEGRADATION BETA-OXIDATION ACYL COA DH 7 6.80e-02 -0.398000 2.01e-01
DNA SYNTHESIS/CHROMATIN STRUCTURE HISTONE CORE H4 8 5.13e-02 -0.398000 1.77e-01
SECONDARY METABOLISM FLAVONOIDS ANTHOCYANINS ANTHOCYANIN 5-AROMATIC ACYLTRANSFERASE 8 5.29e-02 -0.395000 1.78e-01
LIPID METABOLISM FA SYNTHESIS AND FA ELONGATION BETA KETOACYL COA SYNTHASE 8 5.46e-02 -0.392000 1.79e-01
RNA REGULATION OF TRANSCRIPTION CCAAT BOX BINDING FACTOR FAMILY, HAP2 10 3.46e-02 0.386000 1.55e-01
NUCLEOTIDE METABOLISM PHOSPHOTRANSFER AND PYROPHOSPHATASES MISC 11 2.74e-02 0.384000 1.32e-01
TRANSPORT METABOLITE TRANSPORTERS AT THE ENVELOPE MEMBRANE 24 1.58e-03 0.373000 1.80e-02
CELL WALL HEMICELLULOSE SYNTHESIS 14 1.65e-02 0.370000 1.00e-01
NUCLEOTIDE METABOLISM SYNTHESIS PRS-PP 5 1.57e-01 0.365000 3.74e-01
STRESS BIOTIC PR-PROTEINS PLANT DEFENSINS 14 1.95e-02 0.361000 1.09e-01
PROTEIN SYNTHESIS ELONGATION 29 9.32e-04 -0.355000 1.22e-02
HORMONE METABOLISM SALICYLIC ACID SYNTHESIS-DEGRADATION 9 6.60e-02 -0.354000 1.98e-01
STRESS 7 1.09e-01 -0.350000 3.00e-01
NOT ASSIGNED NO ONTOLOGY FORMIN HOMOLOGY 2 DOMAIN-CONTAINING PROTEIN 17 1.26e-02 0.349000 8.74e-02
STRESS BIOTIC SIGNALLING MLO-LIKE 12 3.64e-02 0.349000 1.56e-01
TCA / ORG TRANSFORMATION OTHER ORGANIC ACID TRANSFORMATONS CYT MDH 5 1.79e-01 -0.347000 4.11e-01
PROTEIN DEGRADATION AAA TYPE 34 4.75e-04 -0.346000 8.79e-03
RNA REGULATION OF TRANSCRIPTION PSUDO ARR TRANSCRIPTION FACTOR FAMILY 7 1.19e-01 -0.340000 3.20e-01
HORMONE METABOLISM BRASSINOSTEROID SYNTHESIS-DEGRADATION STEROLS OTHER 8 9.58e-02 -0.340000 2.73e-01
PROTEIN SYNTHESIS RIBOSOMAL PROTEIN EUKARYOTIC 40S SUBUNIT S17 6 1.50e-01 -0.340000 3.65e-01
PS PHOTORESPIRATION GLYCOLATE OXYDASE 5 1.89e-01 -0.339000 4.26e-01
PROTEIN SYNTHESIS RIBOSOMAL PROTEIN EUKARYOTIC 60S SUBUNIT L7A 5 1.90e-01 -0.338000 4.27e-01
SIGNALLING PHOSPHINOSITIDES 16 2.16e-02 0.332000 1.14e-01
SECONDARY METABOLISM ISOPRENOIDS 7 1.31e-01 -0.330000 3.40e-01
NOT ASSIGNED NO ONTOLOGY GLYCINE RICH PROTEINS 56 2.00e-05 -0.329000 6.84e-04
SIGNALLING RECEPTOR KINASES CATHARANTHUS ROSEUS-LIKE RLK1 15 2.74e-02 0.329000 1.32e-01
N-METABOLISM AMMONIA METABOLISM GLUTAMINE SYNTHETASE 7 1.32e-01 0.329000 3.40e-01
CELL WALL PRECURSOR SYNTHESIS UGE 5 2.03e-01 -0.329000 4.41e-01
SIGNALLING RECEPTOR KINASES LEUCINE RICH REPEAT VIII VIII-2 13 4.08e-02 0.328000 1.63e-01
SECONDARY METABOLISM FLAVONOIDS DIHYDROFLAVONOLS 17 2.01e-02 0.326000 1.12e-01
SIGNALLING PHOSPHINOSITIDES PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE 18 1.72e-02 0.324000 1.02e-01
MISC GLUCO-, GALACTO- AND MANNOSIDASES ENDOGLUCANASE 12 5.38e-02 0.321000 1.79e-01
SIGNALLING RECEPTOR KINASES PROLINE EXTENSIN LIKE 16 2.61e-02 0.321000 1.31e-01
NOT ASSIGNED NO ONTOLOGY PROLINE RICH FAMILY 39 5.48e-04 0.320000 9.35e-03
PROTEIN POSTRANSLATIONAL MODIFICATION KINASE RECEPTOR LIKE CYTOPLASMATIC KINASE IX 14 3.98e-02 0.317000 1.61e-01
HORMONE METABOLISM CYTOKININ SYNTHESIS-DEGRADATION 14 4.00e-02 0.317000 1.61e-01
PROTEIN AA ACTIVATION PSEUDOURIDYLATE SYNTHASE 16 2.86e-02 -0.316000 1.35e-01
REDOX ASCORBATE AND GLUTATHIONE GLUTATHIONE 13 5.13e-02 0.312000 1.77e-01
MITOCHONDRIAL ELECTRON TRANSPORT / ATP SYNTHESIS NADH-DH COMPLEX I 6 1.95e-01 -0.306000 4.29e-01
NUCLEOTIDE METABOLISM SALVAGE PHOSPHORIBOSYLTRANSFERASES APRT 5 2.38e-01 0.305000 4.79e-01
TRANSPORT CYCLIC NUCLEOTIDE OR CALCIUM REGULATED CHANNELS 18 2.67e-02 0.302000 1.32e-01
SIGNALLING RECEPTOR KINASES LEUCINE RICH REPEAT XIII 6 2.02e-01 0.301000 4.41e-01
REDOX MISC 6 2.04e-01 0.299000 4.41e-01
RNA REGULATION OF TRANSCRIPTION CCAAT BOX BINDING FACTOR FAMILY, HAP3 7 1.71e-01 -0.299000 4.00e-01
PROTEIN SYNTHESIS RIBOSOMAL PROTEIN EUKARYOTIC 60S SUBUNIT L34 10 1.05e-01 -0.296000 2.93e-01
SECONDARY METABOLISM FLAVONOIDS ANTHOCYANINS 11 9.12e-02 -0.294000 2.63e-01
PROTEIN SYNTHESIS RIBOSOMAL PROTEIN EUKARYOTIC 60S SUBUNIT UNKNOWN 5 2.55e-01 -0.294000 4.97e-01
NUCLEOTIDE METABOLISM PHOSPHOTRANSFER AND PYROPHOSPHATASES NUCLEOSIDE DIPHOSPHATE KINASE 5 2.58e-01 -0.292000 4.97e-01
RNA REGULATION OF TRANSCRIPTION C2C2(ZN) CO-LIKE, CONSTANS-LIKE ZINC FINGER FAMILY 23 1.57e-02 -0.291000 9.68e-02
PROTEIN TARGETING SECRETORY PATHWAY VACUOLE 29 6.85e-03 0.290000 5.63e-02
AMINO ACID METABOLISM SYNTHESIS AROMATIC AA TRYPTOPHAN TRYPTOPHAN SYNTHASE 5 2.61e-01 0.290000 4.98e-01
RNA REGULATION OF TRANSCRIPTION ARR 16 4.47e-02 0.290000 1.68e-01
HORMONE METABOLISM CYTOKININ SIGNAL TRANSDUCTION 7 1.87e-01 0.288000 4.24e-01
HORMONE METABOLISM ABSCISIC ACID SYNTHESIS-DEGRADATION 11 1.04e-01 -0.283000 2.92e-01
SECONDARY METABOLISM WAX 17 4.55e-02 0.280000 1.68e-01
PROTEIN SYNTHESIS RIBOSOMAL PROTEIN UNKNOWN UNKNOWN 5 2.80e-01 -0.279000 5.25e-01
NUCLEOTIDE METABOLISM PHOSPHOTRANSFER AND PYROPHOSPHATASES ADENYLATE KINASE 7 2.04e-01 0.277000 4.41e-01
RNA REGULATION OF TRANSCRIPTION CCAAT BOX BINDING FACTOR FAMILY, HAP5 10 1.32e-01 -0.275000 3.40e-01
PROTEIN POSTRANSLATIONAL MODIFICATION KINASE RECEPTOR LIKE CYTOPLASMATIC KINASE VI 14 7.74e-02 0.273000 2.28e-01
NOT ASSIGNED NO ONTOLOGY PAIRED AMPHIPATHIC HELIX REPEAT-CONTAINING PROTEIN 5 2.93e-01 0.271000 5.40e-01
RNA REGULATION OF TRANSCRIPTION NAC DOMAIN TRANSCRIPTION FACTOR FAMILY 16 6.06e-02 -0.271000 1.88e-01
SIGNALLING RECEPTOR KINASES LEGUME-LECTIN 14 8.29e-02 0.268000 2.41e-01
CELL WALL CELL WALL PROTEINS LRR 18 4.95e-02 0.267000 1.76e-01
PROTEIN POSTRANSLATIONAL MODIFICATION KINASE RECEPTOR LIKE CYTOPLASMATIC KINASE VII 43 2.67e-03 0.265000 2.70e-02
SIGNALLING PHOSPHORELAY 5 3.06e-01 0.264000 5.59e-01
PROTEIN SYNTHESIS RIBOSOMAL PROTEIN EUKARYOTIC 60S SUBUNIT L7 6 2.64e-01 -0.263000 5.02e-01
PROTEIN SYNTHESIS RIBOSOME BIOGENESIS EXPORT FROM NUCLEUS 7 2.36e-01 -0.259000 4.79e-01
MAJOR CHO METABOLISM DEGRADATION SUCROSE HEXOKINASE 5 3.18e-01 -0.258000 5.74e-01
PROTEIN SYNTHESIS RIBOSOME BIOGENESIS PRE-RRNA PROCESSING AND MODIFICATIONS SNORNPS 14 9.51e-02 -0.258000 2.72e-01
LIPID METABOLISM PHOSPHOLIPID SYNTHESIS 1-ACYLGLYCEROL-3-PHOSPHATE O-ACYLTRANSFERASE 5 3.21e-01 0.256000 5.74e-01
SIGNALLING RECEPTOR KINASES MISC 75 1.29e-04 0.256000 3.82e-03
PROTEIN AA ACTIVATION 9 1.93e-01 -0.250000 4.29e-01
PROTEIN DEGRADATION UBIQUITIN PROTEASOM 60 8.63e-04 -0.249000 1.16e-02
PROTEIN SYNTHESIS RIBOSOME BIOGENESIS PRE-RRNA PROCESSING AND MODIFICATIONS SNORNAS 14 1.12e-01 -0.245000 3.05e-01
MISC MISC2 27 2.77e-02 -0.245000 1.32e-01
SIGNALLING RECEPTOR KINASES LEUCINE RICH REPEAT VII 10 1.81e-01 0.245000 4.11e-01
MISC PLASTOCYANIN-LIKE 24 3.99e-02 0.242000 1.61e-01
CELL WALL CELLULOSE SYNTHESIS CELLULOSE SYNTHASE 25 3.61e-02 0.242000 1.56e-01
RNA REGULATION OF TRANSCRIPTION GRAS TRANSCRIPTION FACTOR FAMILY 8 2.37e-01 0.241000 4.79e-01
TRANSPORT PEPTIDES AND OLIGOPEPTIDES 54 2.17e-03 0.241000 2.29e-02
REDOX ASCORBATE AND GLUTATHIONE 23 4.53e-02 0.241000 1.68e-01
LIPID METABOLISM FA SYNTHESIS AND FA ELONGATION ACYL COA LIGASE 18 7.80e-02 -0.240000 2.28e-01
HORMONE METABOLISM ABSCISIC ACID INDUCED-REGULATED-RESPONSIVE-ACTIVATED 23 4.72e-02 -0.239000 1.72e-01
TRANSPORT NUCLEOTIDES 20 6.43e-02 0.239000 1.96e-01
MISC ACYL TRANSFERASES 8 2.42e-01 0.239000 4.87e-01
PROTEIN POSTRANSLATIONAL MODIFICATION KINASE 22 5.27e-02 0.239000 1.78e-01
FERMENTATION PDC 5 3.56e-01 -0.238000 6.08e-01
TRANSPORT PHOSPHATE 23 4.78e-02 0.238000 1.72e-01
NOT ASSIGNED NO ONTOLOGY ABC1 FAMILY PROTEIN 11 1.79e-01 -0.234000 4.11e-01
MISC PEROXIDASES 63 1.40e-03 0.233000 1.63e-02
RNA REGULATION OF TRANSCRIPTION GEBP LIKE 10 2.10e-01 -0.229000 4.46e-01
MINOR CHO METABOLISM CALLOSE 14 1.39e-01 0.229000 3.54e-01
PROTEIN SYNTHESIS RIBOSOME BIOGENESIS BRIX 6 3.35e-01 -0.227000 5.85e-01
MISC GLUCO-, GALACTO- AND MANNOSIDASES BETA-GALACTOSIDASE 14 1.47e-01 0.224000 3.63e-01
MAJOR CHO METABOLISM SYNTHESIS STARCH STARCH SYNTHASE 6 3.51e-01 -0.220000 6.02e-01
RNA REGULATION OF TRANSCRIPTION HDA 15 1.41e-01 -0.220000 3.55e-01
REDOX GLUTAREDOXINS 29 4.17e-02 0.219000 1.64e-01
PROTEIN DEGRADATION UBIQUITIN E3 SCF CULLIN 5 3.98e-01 0.218000 6.47e-01
TRANSPORT UNSPECIFIED ANIONS 15 1.45e-01 0.217000 3.62e-01
MISC RHODANESE 7 3.22e-01 -0.216000 5.74e-01
LIPID METABOLISM LIPID DEGRADATION LYSOPHOSPHOLIPASES 8 2.90e-01 0.216000 5.37e-01
SIGNALLING RECEPTOR KINASES WALL ASSOCIATED KINASE 18 1.13e-01 0.215000 3.07e-01
PROTEIN SYNTHESIS RIBOSOME BIOGENESIS PRE-RRNA PROCESSING AND MODIFICATIONS WD-REPEAT PROTEINS 6 3.65e-01 -0.214000 6.17e-01
HORMONE METABOLISM JASMONATE SYNTHESIS-DEGRADATION 12-OXO-PDA-REDUCTASE 6 3.65e-01 -0.213000 6.17e-01
RNA PROCESSING 106 1.66e-04 -0.212000 4.45e-03
RNA REGULATION OF TRANSCRIPTION GENERAL TRANSCRIPTION 30 4.49e-02 -0.212000 1.68e-01
CELL WALL DEGRADATION PECTATE LYASES AND POLYGALACTURONASES 62 4.59e-03 0.208000 4.07e-02
SIGNALLING RECEPTOR KINASES EXTENSIN 5 4.22e-01 0.207000 6.62e-01
PROTEIN SYNTHESIS INITIATION 77 1.85e-03 -0.205000 2.00e-02
LIPID METABOLISM LIPID DEGRADATION LYSOPHOSPHOLIPASES CARBOXYLESTERASE 8 3.17e-01 0.204000 5.74e-01
MISC BETA 1,3 GLUCAN HYDROLASES 19 1.26e-01 0.203000 3.32e-01
TCA / ORG TRANSFORMATION CARBONIC ANHYDRASES 11 2.45e-01 -0.202000 4.89e-01
SECONDARY METABOLISM FLAVONOIDS FLAVONOLS FLAVONOL SYNTHASE (FLS) 5 4.34e-01 0.202000 6.68e-01
HORMONE METABOLISM JASMONATE INDUCED-REGULATED-RESPONSIVE-ACTIVATED 13 2.09e-01 0.201000 4.46e-01
SIGNALLING LIGHT COP9 SIGNALOSOME 12 2.30e-01 -0.200000 4.76e-01
TRANSPORT MAJOR INTRINSIC PROTEINS PIP 13 2.13e-01 -0.200000 4.48e-01
NOT ASSIGNED NO ONTOLOGY PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN 419 2.96e-12 -0.199000 6.58e-10
SECONDARY METABOLISM PHENYLPROPANOIDS 37 3.66e-02 0.199000 1.56e-01
MISC GLUTATHIONE S TRANSFERASES 53 1.31e-02 -0.197000 8.74e-02
PROTEIN SYNTHESIS RIBOSOME BIOGENESIS 11 2.60e-01 -0.196000 4.98e-01
PROTEIN DEGRADATION UBIQUITIN E3 BTB/POZ CULLIN3 BTB/POZ 10 2.84e-01 0.196000 5.30e-01
HORMONE METABOLISM ABSCISIC ACID SIGNAL TRANSDUCTION 10 2.86e-01 -0.195000 5.32e-01
STRESS ABIOTIC COLD 18 1.54e-01 -0.194000 3.71e-01
TRANSPORT AMINO ACIDS 58 1.06e-02 0.194000 8.02e-02
CELL WALL MODIFICATION 55 1.28e-02 0.194000 8.74e-02
SIGNALLING UNSPECIFIED 7 3.80e-01 -0.192000 6.27e-01
RNA REGULATION OF TRANSCRIPTION SIGMA LIKE PLANT 6 4.17e-01 -0.191000 6.57e-01
HORMONE METABOLISM ETHYLENE SYNTHESIS-DEGRADATION 1-AMINOCYCLOPROPANE-1-CARBOXYLATE OXIDASE 5 4.60e-01 0.191000 6.92e-01
DEVELOPMENT LATE EMBRYOGENESIS ABUNDANT 19 1.51e-01 -0.190000 3.66e-01
HORMONE METABOLISM AUXIN SYNTHESIS-DEGRADATION 12 2.58e-01 0.188000 4.97e-01
PROTEIN TARGETING MITOCHONDRIA 32 6.61e-02 -0.188000 1.98e-01
DEVELOPMENT SQUAMOSA PROMOTER BINDING LIKE (SPL) 15 2.14e-01 0.185000 4.48e-01
DNA SYNTHESIS/CHROMATIN STRUCTURE HISTONE CORE H2B 8 3.65e-01 -0.185000 6.17e-01
STRESS ABIOTIC TOUCH/WOUNDING 14 2.33e-01 -0.184000 4.78e-01
AMINO ACID METABOLISM SYNTHESIS BRANCHED CHAIN GROUP COMMON BRANCHED-CHAIN AMINO ACID AMINOTRANSFERASE 6 4.34e-01 0.184000 6.68e-01
HORMONE METABOLISM ETHYLENE SYNTHESIS-DEGRADATION 19 1.66e-01 0.184000 3.92e-01
STRESS BIOTIC PR-PROTEINS PROTEINASE INHIBITORS TRYPSIN INHIBITOR 9 3.42e-01 0.183000 5.95e-01
SIGNALLING MAP KINASES 45 3.38e-02 0.183000 1.55e-01
RNA REGULATION OF TRANSCRIPTION HSF,HEAT-SHOCK TRANSCRIPTION FACTOR FAMILY 19 1.69e-01 -0.182000 3.96e-01
REDOX THIOREDOXIN PDIL 13 2.55e-01 0.182000 4.97e-01
RNA TRANSCRIPTION 83 4.32e-03 -0.181000 4.00e-02
PROTEIN DEGRADATION UBIQUITIN E1 7 4.07e-01 -0.181000 6.54e-01
GLYCOLYSIS CYTOSOLIC BRANCH PHOSPHOGLYCERATE MUTASE 8 3.78e-01 0.180000 6.27e-01
RNA REGULATION OF TRANSCRIPTION HB,HOMEOBOX TRANSCRIPTION FACTOR FAMILY 68 1.06e-02 -0.179000 8.02e-02
PROTEIN FOLDING 63 1.43e-02 -0.178000 9.15e-02
RNA REGULATION OF TRANSCRIPTION BBR/BPC 7 4.17e-01 -0.177000 6.57e-01
SIGNALLING CALCIUM 204 1.31e-05 0.177000 4.85e-04
RNA PROCESSING SPLICING 59 1.93e-02 -0.176000 1.09e-01
NUCLEOTIDE METABOLISM DEGRADATION 26 1.39e-01 0.168000 3.54e-01
STRESS BIOTIC PR-PROTEINS 170 1.70e-04 0.167000 4.45e-03
PROTEIN SYNTHESIS RIBOSOME BIOGENESIS PRE-RRNA PROCESSING AND MODIFICATIONS METHYLOTRANSFERASES 16 2.53e-01 -0.165000 4.97e-01
HORMONE METABOLISM GIBBERELIN INDUCED-REGULATED-RESPONSIVE-ACTIVATED 12 3.23e-01 0.165000 5.74e-01
RNA REGULATION OF TRANSCRIPTION ALFIN-LIKE 7 4.53e-01 -0.164000 6.85e-01
PROTEIN DEGRADATION UBIQUITIN UBIQUITIN PROTEASE 20 2.06e-01 0.163000 4.41e-01
SIGNALLING MISC 18 2.31e-01 0.163000 4.76e-01
RNA REGULATION OF TRANSCRIPTION DNA METHYLTRANSFERASES 8 4.25e-01 -0.163000 6.64e-01
MITOCHONDRIAL ELECTRON TRANSPORT / ATP SYNTHESIS CYTOCHROME C OXIDASE 26 1.55e-01 -0.161000 3.72e-01
DNA SYNTHESIS/CHROMATIN STRUCTURE HISTONE H1 7 4.69e-01 -0.158000 6.98e-01
NUCLEOTIDE METABOLISM SALVAGE NUDIX HYDROLASES 24 1.81e-01 -0.158000 4.11e-01
NOT ASSIGNED NO ONTOLOGY ARMADILLO/BETA-CATENIN REPEAT FAMILY PROTEIN 32 1.23e-01 0.157000 3.27e-01
TRANSPORT P- AND V-ATPASES 28 1.49e-01 0.157000 3.65e-01
TCA / ORG TRANSFORMATION OTHER ORGANIC ACID TRANSFORMATONS MALIC 6 5.06e-01 0.157000 7.26e-01
RNA PROCESSING RNA HELICASE 33 1.24e-01 -0.155000 3.27e-01
LIPID METABOLISM LIPID DEGRADATION LIPASES TRIACYLGLYCEROL LIPASE 28 1.58e-01 -0.154000 3.74e-01
RNA REGULATION OF TRANSCRIPTION METHYL BINDING DOMAIN PROTEINS 10 4.01e-01 -0.153000 6.49e-01
MISC ALCOHOL DEHYDROGENASES CINNAMYL ALCOHOL DEHYDROGENASE 5 5.53e-01 -0.153000 7.50e-01
MISC PROTEASE INHIBITOR/SEED STORAGE/LIPID TRANSFER PROTEIN (LTP) FAMILY PROTEIN 54 5.28e-02 0.152000 1.78e-01
RNA REGULATION OF TRANSCRIPTION C2C2(ZN) DOF ZINC FINGER FAMILY 31 1.42e-01 -0.152000 3.57e-01
NOT ASSIGNED NO ONTOLOGY SPECKLE-TYPE POZ PROTEIN-RELATED 5 5.55e-01 0.152000 7.50e-01
PROTEIN SYNTHESIS RIBOSOME BIOGENESIS PRE-RRNA PROCESSING AND MODIFICATIONS DEXD-BOX HELICASES 14 3.27e-01 -0.151000 5.76e-01
MINOR CHO METABOLISM TREHALOSE TPP 9 4.34e-01 -0.151000 6.68e-01
OPP OXIDATIVE PP G6PD 6 5.26e-01 0.150000 7.32e-01
PROTEIN DEGRADATION UBIQUITIN E3 HECT 7 4.94e-01 0.149000 7.22e-01
PROTEIN DEGRADATION METALLOPROTEASE 36 1.24e-01 -0.148000 3.27e-01
AMINO ACID METABOLISM DEGRADATION AROMATIC AA TRYPTOPHAN 12 3.77e-01 -0.147000 6.27e-01
NOT ASSIGNED NO ONTOLOGY C2 DOMAIN-CONTAINING PROTEIN 39 1.12e-01 0.147000 3.05e-01
RNA REGULATION OF TRANSCRIPTION E2F/DP TRANSCRIPTION FACTOR FAMILY 8 4.74e-01 -0.146000 7.04e-01
REDOX HEME 5 5.71e-01 0.146000 7.62e-01
HORMONE METABOLISM ETHYLENE INDUCED-REGULATED-RESPONSIVE-ACTIVATED 22 2.36e-01 -0.146000 4.79e-01
SECONDARY METABOLISM ISOPRENOIDS NON-MEVALONATE PATHWAY 7 5.05e-01 -0.146000 7.26e-01
LIPID METABOLISM LIPID DEGRADATION LYSOPHOSPHOLIPASES PHOSPHOLIPASE D 12 3.85e-01 0.145000 6.31e-01
MISC UDP GLUCOSYL AND GLUCORONYL TRANSFERASES 157 1.79e-03 0.144000 1.99e-02
MAJOR CHO METABOLISM SYNTHESIS STARCH AGPASE 8 4.80e-01 0.144000 7.09e-01
MISC DYNAMIN 9 4.54e-01 0.144000 6.85e-01
TRANSPORT METABOLITE TRANSPORTERS AT THE MITOCHONDRIAL MEMBRANE 63 4.82e-02 -0.144000 1.72e-01
RNA REGULATION OF TRANSCRIPTION AUX/IAA FAMILY 25 2.13e-01 0.144000 4.48e-01
N-METABOLISM MISC 6 5.42e-01 -0.144000 7.45e-01
CELL ORGANISATION 347 4.75e-06 0.143000 2.34e-04
STRESS ABIOTIC DROUGHT/SALT 67 4.37e-02 0.143000 1.68e-01
SECONDARY METABOLISM FLAVONOIDS CHALCONES 7 5.15e-01 0.142000 7.28e-01
PROTEIN AA ACTIVATION ASPARAGINE-TRNA LIGASE 5 5.84e-01 -0.141000 7.72e-01
DNA REPAIR 75 3.46e-02 -0.141000 1.55e-01
SIGNALLING LIPIDS 6 5.50e-01 0.141000 7.50e-01
RNA REGULATION OF TRANSCRIPTION BROMODOMAIN PROTEINS 8 5.00e-01 -0.138000 7.26e-01
TRANSPORT NITRATE 11 4.31e-01 0.137000 6.68e-01
RNA REGULATION OF TRANSCRIPTION MADS BOX TRANSCRIPTION FACTOR FAMILY 30 1.95e-01 -0.137000 4.29e-01
RNA REGULATION OF TRANSCRIPTION FHA TRANSCRIPTION FACTOR 7 5.35e-01 -0.135000 7.43e-01
C1-METABOLISM GLYCINE HYDROXYMETHYLTRANSFERASE 7 5.39e-01 0.134000 7.45e-01
PROTEIN POSTRANSLATIONAL MODIFICATION 505 3.94e-07 0.132000 2.92e-05
RNA REGULATION OF TRANSCRIPTION HISTONE ACETYLTRANSFERASES 17 3.49e-01 -0.131000 6.01e-01
RNA REGULATION OF TRANSCRIPTION JUMONJI FAMILY 13 4.15e-01 -0.131000 6.57e-01
SIGNALLING RECEPTOR KINASES CRINKLY LIKE 8 5.26e-01 0.130000 7.32e-01
SIGNALLING 14-3-3 PROTEINS 11 4.64e-01 0.127000 6.94e-01
AMINO ACID METABOLISM DEGRADATION GLUTAMATE FAMILY ARGININE 7 5.60e-01 -0.127000 7.53e-01
LIPID METABOLISM LIPID DEGRADATION LIPASES 10 4.88e-01 -0.127000 7.16e-01
PROTEIN TARGETING SECRETORY PATHWAY UNSPECIFIED 72 6.65e-02 0.125000 1.98e-01
METAL HANDLING BINDING, CHELATION AND STORAGE 46 1.46e-01 -0.124000 3.63e-01
LIPID METABOLISM FA SYNTHESIS AND FA ELONGATION ACP PROTEIN 7 5.71e-01 -0.124000 7.62e-01
CELL VESICLE TRANSPORT 160 7.64e-03 0.122000 6.17e-02
DNA UNSPECIFIED 86 5.09e-02 -0.122000 1.77e-01
DNA SYNTHESIS/CHROMATIN STRUCTURE HISTONE CORE H3 6 6.06e-01 -0.122000 7.93e-01
CELL DIVISION 94 4.18e-02 -0.121000 1.64e-01
RNA REGULATION OF TRANSCRIPTION ZN-FINGER(CCHC) 10 5.08e-01 -0.121000 7.26e-01
GLYCOLYSIS CYTOSOLIC BRANCH PYRUVATE KINASE (PK) 6 6.11e-01 0.120000 7.95e-01
PROTEIN TARGETING PEROXISOMES 10 5.14e-01 -0.119000 7.28e-01
RNA REGULATION OF TRANSCRIPTION C2C2(ZN) GATA TRANSCRIPTION FACTOR FAMILY 25 3.03e-01 0.119000 5.56e-01
MITOCHONDRIAL ELECTRON TRANSPORT / ATP SYNTHESIS CYTOCHROME C REDUCTASE 10 5.17e-01 -0.118000 7.28e-01
RNA REGULATION OF TRANSCRIPTION C3H ZINC FINGER FAMILY 24 3.26e-01 -0.116000 5.76e-01
NOT ASSIGNED NO ONTOLOGY BTB/POZ DOMAIN-CONTAINING PROTEIN 5 6.60e-01 0.114000 8.21e-01
RNA REGULATION OF TRANSCRIPTION AP2/EREBP, APETALA2/ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN FAMILY 90 6.27e-02 -0.114000 1.93e-01
PROTEIN DEGRADATION UBIQUITIN E2 38 2.28e-01 -0.113000 4.75e-01
PROTEIN TARGETING CHLOROPLAST 36 2.45e-01 -0.112000 4.89e-01
RNA REGULATION OF TRANSCRIPTION SET-DOMAIN TRANSCRIPTIONAL REGULATOR FAMILY 33 2.68e-01 -0.111000 5.06e-01
RNA REGULATION OF TRANSCRIPTION ORPHAN FAMILY 9 5.65e-01 -0.111000 7.58e-01
HORMONE METABOLISM ETHYLENE SIGNAL TRANSDUCTION 33 2.78e-01 0.109000 5.22e-01
RNA REGULATION OF TRANSCRIPTION C2H2 ZINC FINGER FAMILY 100 5.99e-02 0.109000 1.87e-01
CELL WALL CELL WALL PROTEINS HRGP 14 4.85e-01 0.108000 7.14e-01
MINOR CHO METABOLISM OTHERS 38 2.55e-01 -0.107000 4.97e-01
MISC BETA 1,3 GLUCAN HYDROLASES GLUCAN ENDO-1,3-BETA-GLUCOSIDASE 24 3.69e-01 0.106000 6.20e-01
LIPID METABOLISM EXOTICS(STEROIDS, SQUALENE ETC) 17 4.52e-01 0.105000 6.85e-01
NOT ASSIGNED NO ONTOLOGY HYDROXYPROLINE RICH PROTEINS 56 1.74e-01 0.105000 4.03e-01
SECONDARY METABOLISM N MISC ALKALOID-LIKE 18 4.44e-01 -0.104000 6.79e-01
RNA RNA BINDING 164 2.13e-02 -0.104000 1.14e-01
RNA REGULATION OF TRANSCRIPTION AS2,LATERAL ORGAN BOUNDARIES GENE FAMILY 25 3.70e-01 0.104000 6.20e-01
NOT ASSIGNED NO ONTOLOGY BSD DOMAIN-CONTAINING PROTEIN 7 6.40e-01 -0.102000 8.14e-01
PROTEIN DEGRADATION UBIQUITIN UBIQUITIN 25 3.77e-01 0.102000 6.27e-01
HORMONE METABOLISM ETHYLENE SYNTHESIS-DEGRADATION 1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 9 5.97e-01 0.102000 7.84e-01
PROTEIN DEGRADATION UBIQUITIN E3 RING 372 7.82e-04 0.101000 1.13e-02
NOT ASSIGNED NO ONTOLOGY AGENET DOMAIN-CONTAINING PROTEIN 15 5.00e-01 -0.100000 7.26e-01
MITOCHONDRIAL ELECTRON TRANSPORT / ATP SYNTHESIS NADH-DH LOCALISATION NOT CLEAR 33 3.23e-01 -0.099500 5.74e-01
MAJOR CHO METABOLISM DEGRADATION STARCH STARCH CLEAVAGE BETA AMYLASE 8 6.29e-01 0.098700 8.06e-01
TRANSPORT MAJOR INTRINSIC PROTEINS TIP 7 6.56e-01 -0.097100 8.21e-01
RNA REGULATION OF TRANSCRIPTION PWWP DOMAIN PROTEIN 11 5.78e-01 0.096900 7.67e-01
SIGNALLING RECEPTOR KINASES DUF 26 34 3.34e-01 -0.095800 5.85e-01
MISC CALCINEURIN-LIKE PHOSPHOESTERASE FAMILY PROTEIN 7 6.61e-01 0.095700 8.21e-01
HORMONE METABOLISM BRASSINOSTEROID SIGNAL TRANSDUCTION BRI 6 6.90e-01 0.094200 8.37e-01
SECONDARY METABOLISM ISOPRENOIDS TERPENOIDS 26 4.10e-01 -0.093400 6.54e-01
AMINO ACID METABOLISM SYNTHESIS ASPARTATE FAMILY METHIONINE HOMOCYSTEINE S-METHYLTRANSFERASE 8 6.49e-01 -0.093000 8.18e-01
DNA SYNTHESIS/CHROMATIN STRUCTURE 205 2.25e-02 -0.092400 1.16e-01
PROTEIN DEGRADATION ASPARTATE PROTEASE 31 3.82e-01 0.090800 6.27e-01
METAL HANDLING ACQUISITION 9 6.38e-01 -0.090600 8.14e-01
MISC GCN5-RELATED N-ACETYLTRANSFERASE 24 4.45e-01 -0.090100 6.79e-01
FERMENTATION ALDEHYDE DEHYDROGENASE 7 6.80e-01 -0.090000 8.31e-01
SIGNALLING G-PROTEINS 218 2.65e-02 0.087200 1.32e-01
MISC O-METHYL TRANSFERASES 20 5.04e-01 -0.086300 7.26e-01
RNA REGULATION OF TRANSCRIPTION PHOR1 11 6.30e-01 0.083800 8.06e-01
MISC GLUCO-, GALACTO- AND MANNOSIDASES 43 3.43e-01 -0.083600 5.95e-01
HORMONE METABOLISM JASMONATE SYNTHESIS-DEGRADATION LIPOXYGENASE 6 7.23e-01 -0.083600 8.68e-01
STRESS BIOTIC SIGNALLING 12 6.20e-01 0.082700 8.03e-01
NUCLEOTIDE METABOLISM PHOSPHOTRANSFER AND PYROPHOSPHATASES URIDYLATE KINASE 5 7.49e-01 -0.082600 8.80e-01
LIPID METABOLISM LIPID DEGRADATION BETA-OXIDATION ACYL-COA THIOESTERASE 6 7.27e-01 -0.082300 8.68e-01
SIGNALLING IN SUGAR AND NUTRIENT PHYSIOLOGY 36 3.96e-01 0.081700 6.47e-01
AMINO ACID METABOLISM SYNTHESIS SERINE-GLYCINE-CYSTEINE GROUP CYSTEINE OASTL 10 6.56e-01 -0.081300 8.21e-01
MISC SHORT CHAIN DEHYDROGENASE/REDUCTASE (SDR) 50 3.21e-01 -0.081100 5.74e-01
TRANSPORT METAL 68 2.51e-01 0.080600 4.97e-01
TRANSPORT POTASSIUM 37 4.06e-01 0.078900 6.54e-01
RNA REGULATION OF TRANSCRIPTION TRIHELIX, TRIPLE-HELIX TRANSCRIPTION FACTOR FAMILY 27 4.80e-01 -0.078400 7.09e-01
RNA REGULATION OF TRANSCRIPTION B3 TRANSCRIPTION FACTOR FAMILY 19 5.55e-01 0.078200 7.50e-01
REDOX THIOREDOXIN 50 3.49e-01 -0.076500 6.01e-01
RNA REGULATION OF TRANSCRIPTION GLOBAL TRANSCRIPTION FACTOR GROUP 14 6.20e-01 -0.076400 8.03e-01
AMINO ACID METABOLISM SYNTHESIS CENTRAL AMINO ACID METABOLISM ASPARTATE ASPARTATE AMINOTRANSFERASE 6 7.49e-01 0.075400 8.80e-01
CELL DIVISION PLASTID 8 7.13e-01 -0.075200 8.62e-01
CELL CYCLE PEPTIDYLPROLYL ISOMERASE 32 4.62e-01 -0.075100 6.93e-01
STRESS ABIOTIC 22 5.51e-01 0.073400 7.50e-01
STRESS ABIOTIC LIGHT 6 7.58e-01 0.072700 8.81e-01
SECONDARY METABOLISM PHENYLPROPANOIDS LIGNIN BIOSYNTHESIS CCOAOMT 6 7.58e-01 0.072700 8.81e-01
TCA / ORG TRANSFORMATION TCA IDH 5 7.82e-01 -0.071500 8.92e-01
RNA REGULATION OF TRANSCRIPTION CPP(ZN),CPP1-RELATED TRANSCRIPTION FACTOR FAMILY 7 7.44e-01 -0.071300 8.80e-01
TRANSPORT PORINS 5 7.83e-01 -0.071000 8.92e-01
CELL WALL DEGRADATION MANNAN-XYLOSE-ARABINOSE-FUCOSE 16 6.30e-01 0.069700 8.06e-01
RNA REGULATION OF TRANSCRIPTION SNF7 12 6.76e-01 -0.069600 8.30e-01
CO-FACTOR AND VITAMINE METABOLISM MOLYBDENUM COFACTOR 5 7.87e-01 0.069600 8.92e-01
TCA / ORG TRANSFORMATION TCA SUCCINATE DEHYDROGENASE 7 7.54e-01 -0.068500 8.81e-01
PROTEIN DEGRADATION AUTOPHAGY 22 5.79e-01 -0.068400 7.67e-01
MISC CYTOCHROME P450 162 1.40e-01 0.067300 3.54e-01
PROTEIN DEGRADATION UBIQUITIN E3 SCF SKP 16 6.43e-01 -0.066800 8.14e-01
CO-FACTOR AND VITAMINE METABOLISM IRON-SULPHUR CLUSTERS 7 7.64e-01 0.065500 8.82e-01
CO-FACTOR AND VITAMINE METABOLISM PANTOTHENATE PANTOTHENATE KINASE (PANK) 5 8.03e-01 -0.064600 8.93e-01
RNA REGULATION OF TRANSCRIPTION CHROMATIN REMODELING FACTORS 35 5.10e-01 -0.064400 7.26e-01
AMINO ACID METABOLISM SYNTHESIS AROMATIC AA CHORISMATE SHIKIMATE KINASE 5 8.08e-01 0.062700 8.93e-01
HORMONE METABOLISM BRASSINOSTEROID SIGNAL TRANSDUCTION OTHER 5 8.09e-01 0.062500 8.93e-01
MAJOR CHO METABOLISM DEGRADATION SUCROSE SUSY 6 7.91e-01 -0.062400 8.92e-01
SIGNALLING RECEPTOR KINASES WHEAT LRK10 LIKE 11 7.21e-01 0.062100 8.68e-01
LIPID METABOLISM FA SYNTHESIS AND FA ELONGATION LONG CHAIN FATTY ACID COA LIGASE 8 7.63e-01 0.061600 8.82e-01
TRANSPORT SUGARS 58 4.31e-01 0.059800 6.68e-01
RNA REGULATION OF TRANSCRIPTION WRKY DOMAIN TRANSCRIPTION FACTOR FAMILY 65 4.12e-01 -0.058900 6.55e-01
RNA REGULATION OF TRANSCRIPTION MYB-RELATED TRANSCRIPTION FACTOR FAMILY 39 5.25e-01 0.058900 7.32e-01
LIPID METABOLISM TAG SYNTHESIS 5 8.21e-01 -0.058300 8.96e-01
METAL HANDLING 10 7.53e-01 0.057600 8.81e-01
AMINO ACID METABOLISM SYNTHESIS AROMATIC AA PHENYLALANINE AROGENATE DEHYDRATASE / PREPHENATE DEHYDRATASE 6 8.08e-01 -0.057400 8.93e-01
REDOX ASCORBATE AND GLUTATHIONE ASCORBATE 17 6.86e-01 -0.056700 8.34e-01
LIPID METABOLISM FA SYNTHESIS AND FA ELONGATION ACYL-COA BINDING PROTEIN 6 8.14e-01 -0.055600 8.93e-01
TRANSPORT MAJOR INTRINSIC PROTEINS NIP 6 8.24e-01 -0.052600 8.96e-01
LIPID METABOLISM PHOSPHOLIPID SYNTHESIS 16 7.17e-01 0.052400 8.65e-01
MAJOR CHO METABOLISM DEGRADATION SUCROSE FRUCTOKINASE 8 8.02e-01 -0.051300 8.93e-01
C1-METABOLISM 10 7.81e-01 -0.050900 8.92e-01
SIGNALLING RECEPTOR KINASES LEUCINE RICH REPEAT XI 27 6.53e-01 0.050000 8.21e-01
MISC INVERTASE/PECTIN METHYLESTERASE INHIBITOR FAMILY PROTEIN 26 6.62e-01 0.049500 8.21e-01
PROTEIN GLYCOSYLATION 27 6.64e-01 0.048300 8.21e-01
PROTEIN DEGRADATION UBIQUITIN E3 SCF FBOX 263 1.91e-01 -0.046800 4.27e-01
MITOCHONDRIAL ELECTRON TRANSPORT / ATP SYNTHESIS CYTOCHROME C 11 7.88e-01 0.046800 8.92e-01
PROTEIN TARGETING SECRETORY PATHWAY GOLGI 17 7.39e-01 -0.046800 8.79e-01
TRANSPORT ABC TRANSPORTERS AND MULTIDRUG RESISTANCE SYSTEMS 107 4.09e-01 -0.046200 6.54e-01
MISC ALCOHOL DEHYDROGENASES 8 8.39e-01 0.041400 9.04e-01
CELL CYCLE 86 5.09e-01 -0.041200 7.26e-01
PROTEIN TARGETING NUCLEUS 43 6.43e-01 0.040800 8.14e-01
RNA REGULATION OF TRANSCRIPTION BZIP TRANSCRIPTION FACTOR FAMILY 60 5.91e-01 -0.040100 7.79e-01
TRANSPORT UNSPECIFIED CATIONS 37 6.75e-01 0.039900 8.30e-01
NUCLEOTIDE METABOLISM SALVAGE PHOSPHORIBOSYLTRANSFERASES UPP 5 8.80e-01 0.038900 9.26e-01
RNA REGULATION OF TRANSCRIPTION ABI3/VP1-RELATED B3-DOMAIN-CONTAINING TRANSCRIPTION FACTOR FAMILY 8 8.50e-01 0.038500 9.05e-01
MISC OXIDASES - COPPER, FLAVONE ETC 86 5.41e-01 0.038200 7.45e-01
STRESS BIOTIC RECEPTORS 17 7.91e-01 0.037100 8.92e-01
AMINO ACID METABOLISM SYNTHESIS AROMATIC AA TRYPTOPHAN ANTHRANILATE SYNTHASE 5 8.86e-01 0.037100 9.30e-01
CO-FACTOR AND VITAMINE METABOLISM 15 8.04e-01 -0.037000 8.93e-01
RNA REGULATION OF TRANSCRIPTION PHD FINGER TRANSCRIPTION FACTOR 10 8.42e-01 0.036500 9.04e-01
NOT ASSIGNED NO ONTOLOGY PUMILIO/PUF RNA-BINDING DOMAIN-CONTAINING PROTEIN 10 8.45e-01 -0.035600 9.04e-01
PROTEIN TARGETING UNKNOWN 9 8.62e-01 0.033600 9.13e-01
STRESS ABIOTIC UNSPECIFIED 85 6.10e-01 -0.032000 7.95e-01
RNA REGULATION OF TRANSCRIPTION ZF-HD 13 8.42e-01 -0.032000 9.04e-01
LIPID METABOLISM LIPID DEGRADATION LYSOPHOSPHOLIPASES GLYCEROPHOSPHODIESTER PHOSPHODIESTERASE 11 8.54e-01 0.031900 9.08e-01
MISC GDSL-MOTIF LIPASE 58 6.77e-01 0.031700 8.30e-01
DEVELOPMENT STORAGE PROTEINS 22 8.03e-01 0.030800 8.93e-01
RNA REGULATION OF TRANSCRIPTION PUTATIVE TRANSCRIPTION REGULATOR 146 5.24e-01 -0.030500 7.32e-01
RNA REGULATION OF TRANSCRIPTION POLYCOMB GROUP (PCG) 7 8.90e-01 0.030200 9.32e-01
TRANSPORT CALCIUM 21 8.20e-01 0.028700 8.96e-01
MINOR CHO METABOLISM TREHALOSE POTENTIAL TPS/TPP 7 8.96e-01 -0.028500 9.36e-01
RNA REGULATION OF TRANSCRIPTION G2-LIKE TRANSCRIPTION FACTOR FAMILY, GARP 38 7.65e-01 0.028100 8.82e-01
DEVELOPMENT UNSPECIFIED 566 2.56e-01 -0.027900 4.97e-01
NOT ASSIGNED UNKNOWN 4611 4.42e-03 -0.027300 4.00e-02
RNA REGULATION OF TRANSCRIPTION BHLH,BASIC HELIX-LOOP-HELIX FAMILY 116 6.22e-01 -0.026500 8.03e-01
RNA PROCESSING RIBONUCLEASES 50 7.48e-01 0.026300 8.80e-01
HORMONE METABOLISM BRASSINOSTEROID SIGNAL TRANSDUCTION BZR 6 9.11e-01 0.026200 9.39e-01
BIODEGRADATION OF XENOBIOTICS HYDROXYACYLGLUTATHIONE HYDROLASE 5 9.23e-01 0.025100 9.39e-01
HORMONE METABOLISM AUXIN SIGNAL TRANSDUCTION 22 8.40e-01 0.024900 9.04e-01
PROTEIN TARGETING SECRETORY PATHWAY ER 14 8.72e-01 -0.024900 9.20e-01
SIGNALLING RECEPTOR KINASES LEUCINE RICH REPEAT XII 9 9.00e-01 -0.024200 9.38e-01
STRESS BIOTIC REGULATION OF TRANSCRIPTION 6 9.25e-01 0.022300 9.39e-01
PROTEIN DEGRADATION UBIQUITIN 57 7.77e-01 -0.021700 8.92e-01
PROTEIN DEGRADATION SUBTILASES 35 8.28e-01 0.021200 8.99e-01
HORMONE METABOLISM AUXIN INDUCED-REGULATED-RESPONSIVE-ACTIVATED 94 7.27e-01 -0.020800 8.68e-01
STRESS BIOTIC 145 6.82e-01 -0.019700 8.31e-01
REDOX DISMUTASES AND CATALASES 11 9.10e-01 0.019700 9.39e-01
DNA SYNTHESIS/CHROMATIN STRUCTURE HISTONE CORE H2A 13 9.03e-01 0.019500 9.39e-01
MISC ACID AND OTHER PHOSPHATASES 61 7.92e-01 -0.019500 8.92e-01
SECONDARY METABOLISM ISOPRENOIDS NON-MEVALONATE PATHWAY GERANYLGERANYL PYROPHOSPHATE SYNTHASE 9 9.21e-01 0.019000 9.39e-01
LIPID METABOLISM LIPID DEGRADATION BETA-OXIDATION ENOYL COA HYDRATASE 9 9.23e-01 -0.018700 9.39e-01
RNA REGULATION OF TRANSCRIPTION 13 9.11e-01 -0.017900 9.39e-01
LIPID METABOLISM FA DESATURATION DESATURASE 6 9.44e-01 -0.016500 9.57e-01
MISC MYROSINASES-LECTIN-JACALIN 49 8.45e-01 0.016100 9.04e-01
RNA REGULATION OF TRANSCRIPTION TCP TRANSCRIPTION FACTOR FAMILY 14 9.22e-01 0.015100 9.39e-01
PROTEIN DEGRADATION SERINE PROTEASE 84 8.12e-01 0.015000 8.93e-01
STRESS ABIOTIC HEAT 165 7.43e-01 -0.014800 8.80e-01
MITOCHONDRIAL ELECTRON TRANSPORT / ATP SYNTHESIS F1-ATPASE 19 9.14e-01 -0.014400 9.39e-01
TRANSPORT MISC 115 8.14e-01 0.012700 8.93e-01
NOT ASSIGNED NO ONTOLOGY 1433 5.54e-01 -0.009350 7.50e-01
RNA REGULATION OF TRANSCRIPTION UNCLASSIFIED 273 7.99e-01 0.008960 8.93e-01
PROTEIN DEGRADATION 130 8.73e-01 -0.008130 9.20e-01
MICRO RNA, NATURAL ANTISENSE ETC 206 8.50e-01 0.007640 9.05e-01
NOT ASSIGNED NO ONTOLOGY TETRATRICOPEPTIDE REPEAT (TPR) 27 9.55e-01 0.006210 9.64e-01
RNA REGULATION OF TRANSCRIPTION MYB DOMAIN TRANSCRIPTION FACTOR FAMILY 115 9.23e-01 -0.005240 9.39e-01
BIODEGRADATION OF XENOBIOTICS 9 9.84e-01 0.003980 9.90e-01
SIGNALLING LIGHT 86 9.51e-01 -0.003870 9.61e-01
HORMONE METABOLISM GIBBERELIN SYNTHESIS-DEGRADATION 7 9.90e-01 0.002760 9.92e-01
PROTEIN DEGRADATION CYSTEINE PROTEASE 47 9.89e-01 0.001150 9.92e-01
RNA REGULATION OF TRANSCRIPTION ATSR TRANSCRIPTION FACTOR FAMILY 6 9.99e-01 0.000217 9.99e-01


Detailed Gene set reports



PS_LIGHTREACTION_PHOTOSYSTEM_II_LHC-II

PS_LIGHTREACTION_PHOTOSYSTEM_II_LHC-II
262
set PS_LIGHTREACTION_PHOTOSYSTEM_II_LHC-II
setSize 14
pANOVA 1.82e-07
s.dist -0.805
p.adjustANOVA 1.62e-05



Top enriched genes

Top 20 genes
GeneID Gene Rank
LHCB1.1 -11166
LHCB2.4 -10795
LHB1B1 -10490
LHCB2.2 -10188
LHCB4.2 -10139
LHCB3 -10078
LHCB5 -9911
LHCB6 -9877
LHCB1.3 -9808
LHCB2.1 -9703
LHCB4.1 -9479
LHB1B2 -9065
LHCB4.3 -4918
LHCB7 -3640

Click HERE to show all gene set members

All member genes
GeneID Gene Rank
LHCB1.1 -11166
LHCB2.4 -10795
LHB1B1 -10490
LHCB2.2 -10188
LHCB4.2 -10139
LHCB3 -10078
LHCB5 -9911
LHCB6 -9877
LHCB1.3 -9808
LHCB2.1 -9703
LHCB4.1 -9479
LHB1B2 -9065
LHCB4.3 -4918
LHCB7 -3640


PS_LIGHTREACTION_PHOTOSYSTEM_I_PSI_POLYPEPTIDE_SUBUNITS

PS_LIGHTREACTION_PHOTOSYSTEM_I_PSI_POLYPEPTIDE_SUBUNITS
265
set PS_LIGHTREACTION_PHOTOSYSTEM_I_PSI_POLYPEPTIDE_SUBUNITS
setSize 16
pANOVA 3.05e-08
s.dist -0.799
p.adjustANOVA 3.39e-06



Top enriched genes

Top 20 genes
GeneID Gene Rank
PSAE1 -10346
PSAH2 -10204
PSAO -10172
PSAK -10089
PSAD2 -10034
PSAG -9998
PSAL -9913
PSAH1 -9717
PSAF -9714
PSAE2 -9694
PSAD1 -9688
PSAN -9526
CURT1B -9232
PSAJ -8195
PSAA -7769
PSAB -2472

Click HERE to show all gene set members

All member genes
GeneID Gene Rank
PSAE1 -10346
PSAH2 -10204
PSAO -10172
PSAK -10089
PSAD2 -10034
PSAG -9998
PSAL -9913
PSAH1 -9717
PSAF -9714
PSAE2 -9694
PSAD1 -9688
PSAN -9526
CURT1B -9232
PSAJ -8195
PSAA -7769
PSAB -2472


TRANSPORT_SULPHATE

TRANSPORT_SULPHATE
442
set TRANSPORT_SULPHATE
setSize 12
pANOVA 7.83e-06
s.dist -0.745
p.adjustANOVA 0.000316



Top enriched genes

Top 20 genes
GeneID Gene Rank
SULTR3;5 -11324
SULTR3;1 -11289
SULTR4;2 -11282
SULTR2;1 -11251
SULTR1;2 -11240
SULTR2;2 -10866
SULTR4;1 -10230
SULTR3;4 -8909
SULTR3;3 -7806
SULTR1;1 -5649
SULTR1;3 -5591
SULTR3;2 2357

Click HERE to show all gene set members

All member genes
GeneID Gene Rank
SULTR3;5 -11324
SULTR3;1 -11289
SULTR4;2 -11282
SULTR2;1 -11251
SULTR1;2 -11240
SULTR2;2 -10866
SULTR4;1 -10230
SULTR3;4 -8909
SULTR3;3 -7806
SULTR1;1 -5649
SULTR1;3 -5591
SULTR3;2 2357


AMINO_ACID_METABOLISM_DEGRADATION_BRANCHED_CHAIN_GROUP_SHARED

AMINO_ACID_METABOLISM_DEGRADATION_BRANCHED_CHAIN_GROUP_SHARED
3
set AMINO_ACID_METABOLISM_DEGRADATION_BRANCHED_CHAIN_GROUP_SHARED
setSize 7
pANOVA 0.000735
s.dist -0.737
p.adjustANOVA 0.0112



Top enriched genes

Top 20 genes
GeneID Gene Rank
PYD4 -11299
KAT1 -11040
PED1 -10768
AT1G21400 -9364
DIN4 -8505
AT5G09300 -5922
BCE2 -2628

Click HERE to show all gene set members

All member genes
GeneID Gene Rank
PYD4 -11299
KAT1 -11040
PED1 -10768
AT1G21400 -9364
DIN4 -8505
AT5G09300 -5922
BCE2 -2628


PS_LIGHTREACTION_NADH_DH

PS_LIGHTREACTION_NADH_DH
260
set PS_LIGHTREACTION_NADH_DH
setSize 11
pANOVA 9.83e-05
s.dist -0.678
p.adjustANOVA 0.00312



Top enriched genes

Top 20 genes
GeneID Gene Rank
ndhL -10352
NDHK -10323
ndhN -9845
NDHJ -9811
NDHF -9677
NDHM -9558
NDHC -9280
CRR3 -6775
ndhO -5031
AT4G37920 -4556
NDHD -1378

Click HERE to show all gene set members

All member genes
GeneID Gene Rank
ndhL -10352
NDHK -10323
ndhN -9845
NDHJ -9811
NDHF -9677
NDHM -9558
NDHC -9280
CRR3 -6775
ndhO -5031
AT4G37920 -4556
NDHD -1378


SIGNALLING_RECEPTOR_KINASES_LEUCINE_RICH_REPEAT_VI

SIGNALLING_RECEPTOR_KINASES_LEUCINE_RICH_REPEAT_VI
383
set SIGNALLING_RECEPTOR_KINASES_LEUCINE_RICH_REPEAT_VI
setSize 10
pANOVA 0.000216
s.dist 0.676
p.adjustANOVA 0.00504



Top enriched genes

Top 20 genes
GeneID Gene Rank
AT5G41180 9937
AT5G63410 9786
AT5G07150 9712
AT5G45840 9395
MDIS2 8074
AT1G63430 7462
AT1G14390 6882
AT2G02780 4186
AT5G14210 3130
AT3G03770 -1920

Click HERE to show all gene set members

All member genes
GeneID Gene Rank
AT5G41180 9937
AT5G63410 9786
AT5G07150 9712
AT5G45840 9395
MDIS2 8074
AT1G63430 7462
AT1G14390 6882
AT2G02780 4186
AT5G14210 3130
AT3G03770 -1920


CELL_WALL_PRECURSOR_SYNTHESIS_GAE

CELL_WALL_PRECURSOR_SYNTHESIS_GAE
40
set CELL_WALL_PRECURSOR_SYNTHESIS_GAE
setSize 6
pANOVA 0.0052
s.dist 0.659
p.adjustANOVA 0.0437



Top enriched genes

Top 20 genes
GeneID Gene Rank
GAE1 9106
GAE6 9060
GAE5 8352
GAE3 5321
GAE2 5120
GAE4 1945

Click HERE to show all gene set members

All member genes
GeneID Gene Rank
GAE1 9106
GAE6 9060
GAE5 8352
GAE3 5321
GAE2 5120
GAE4 1945


PS_LIGHTREACTION_PHOTOSYSTEM_II_PSII_POLYPEPTIDE_SUBUNITS

PS_LIGHTREACTION_PHOTOSYSTEM_II_PSII_POLYPEPTIDE_SUBUNITS
263
set PS_LIGHTREACTION_PHOTOSYSTEM_II_PSII_POLYPEPTIDE_SUBUNITS
setSize 33
pANOVA 6.07e-11
s.dist -0.658
p.adjustANOVA 8.99e-09



Top enriched genes

Top 20 genes
GeneID Gene Rank
PNSL1 -10510
PSBA -10371
PSBO2 -10262
PSBW -10239
PSBQ2 -10220
PPL1 -10022
PSB27-1 -10009
PSBQ1 -9907
PSBR -9666
PSBY -9663
PSBP1 -9588
AT1G51400 -9555
PSBS -9544
PSBTN -9472
PSBD -9466
PSBX -9384
PSBO1 -9328
PNSL2 -9137
PSBI -9094
PPD4 -8987

Click HERE to show all gene set members

All member genes
GeneID Gene Rank
PNSL1 -10510
PSBA -10371
PSBO2 -10262
PSBW -10239
PSBQ2 -10220
PPL1 -10022
PSB27-1 -10009
PSBQ1 -9907
PSBR -9666
PSBY -9663
PSBP1 -9588
AT1G51400 -9555
PSBS -9544
PSBTN -9472
PSBD -9466
PSBX -9384
PSBO1 -9328
PNSL2 -9137
PSBI -9094
PPD4 -8987
PSBC -8820
PSBM -8104
PSBB -8080
PPD2 -7994
AT5G11450 -7436
PPD6 -6976
OHP1 -6865
PSB28 -4401
LPA2 -1605
PPD3 -1436
PSB27-2 444
PPD1 496
PSBK 2905


SIGNALLING_RECEPTOR_KINASES_LEUCINE_RICH_REPEAT_VIII_VIII-1

SIGNALLING_RECEPTOR_KINASES_LEUCINE_RICH_REPEAT_VIII_VIII-1
385
set SIGNALLING_RECEPTOR_KINASES_LEUCINE_RICH_REPEAT_VIII_VIII-1
setSize 9
pANOVA 0.000704
s.dist 0.652
p.adjustANOVA 0.0112



Top enriched genes

Top 20 genes
GeneID Gene Rank
AT1G53340 8836
AT3G53590 8640
AT5G49770 8235
AT5G37450 7681
AT1G06840 6452
AT5G49760 5801
AT5G49780 5562
AT1G79620 4965
AT5G01950 1535

Click HERE to show all gene set members

All member genes
GeneID Gene Rank
AT1G53340 8836
AT3G53590 8640
AT5G49770 8235
AT5G37450 7681
AT1G06840 6452
AT5G49760 5801
AT5G49780 5562
AT1G79620 4965
AT5G01950 1535


NOT_ASSIGNED_NO_ONTOLOGY_TOLL-INTERLEUKIN-RESISTANCE_(TIR)_DOMAIN-CONTAINING_PROTEIN

NOT_ASSIGNED_NO_ONTOLOGY_TOLL-INTERLEUKIN-RESISTANCE_(TIR)_DOMAIN-CONTAINING_PROTEIN
181
set NOT_ASSIGNED_NO_ONTOLOGY_TOLL-INTERLEUKIN-RESISTANCE_(TIR)_DOMAIN-CONTAINING_PROTEIN
setSize 7
pANOVA 0.00366
s.dist 0.634
p.adjustANOVA 0.0353



Top enriched genes

Top 20 genes
GeneID Gene Rank
AT5G44910 9643
TIK 9193
AT5G45220 9122
AT5G45000 7936
AT5G38344 4483
AT1G57830 4420
AT4G23440 -1247

Click HERE to show all gene set members

All member genes
GeneID Gene Rank
AT5G44910 9643
TIK 9193
AT5G45220 9122
AT5G45000 7936
AT5G38344 4483
AT1G57830 4420
AT4G23440 -1247


PS_LIGHTREACTION_CYCLIC_ELECTRON_FLOW-CHLORORESPIRATION

PS_LIGHTREACTION_CYCLIC_ELECTRON_FLOW-CHLORORESPIRATION
259
set PS_LIGHTREACTION_CYCLIC_ELECTRON_FLOW-CHLORORESPIRATION
setSize 9
pANOVA 0.000991
s.dist -0.634
p.adjustANOVA 0.0126



Top enriched genes

Top 20 genes
GeneID Gene Rank
PGRL1B -10451
AOX4 -10184
PIFI -9946
NDHA -9252
NDHH -8218
PGRL1A -7933
NDF2 -6622
NDHI -4541
PGR5 574

Click HERE to show all gene set members

All member genes
GeneID Gene Rank
PGRL1B -10451
AOX4 -10184
PIFI -9946
NDHA -9252
NDHH -8218
PGRL1A -7933
NDF2 -6622
NDHI -4541
PGR5 574


LIPID_METABOLISM_FA_SYNTHESIS_AND_FA_ELONGATION_ACP_DESATURASE

LIPID_METABOLISM_FA_SYNTHESIS_AND_FA_ELONGATION_ACP_DESATURASE
91
set LIPID_METABOLISM_FA_SYNTHESIS_AND_FA_ELONGATION_ACP_DESATURASE
setSize 7
pANOVA 0.00436
s.dist 0.622
p.adjustANOVA 0.04



Top enriched genes

Top 20 genes
GeneID Gene Rank
AT3G02610 10119
AT3G02620 9800
S-ACP-DES5 9389
S-ACP-DES1 8106
S-ACP-DES6 4029
FAB2 2198
S-ACP-DES3 -999

Click HERE to show all gene set members

All member genes
GeneID Gene Rank
AT3G02610 10119
AT3G02620 9800
S-ACP-DES5 9389
S-ACP-DES1 8106
S-ACP-DES6 4029
FAB2 2198
S-ACP-DES3 -999


TRANSPORT_AMMONIUM

TRANSPORT_AMMONIUM
422
set TRANSPORT_AMMONIUM
setSize 7
pANOVA 0.00477
s.dist 0.616
p.adjustANOVA 0.0415



Top enriched genes

Top 20 genes
GeneID Gene Rank
AMT1-5 10123
AMT1-3 10095
AMT1-2 9651
AMT1-1 9356
AMT2 9161
DRG1 1803
DRG2 -8018

Click HERE to show all gene set members

All member genes
GeneID Gene Rank
AMT1-5 10123
AMT1-3 10095
AMT1-2 9651
AMT1-1 9356
AMT2 9161
DRG1 1803
DRG2 -8018


CELL_WALL_CELLULOSE_SYNTHESIS

CELL_WALL_CELLULOSE_SYNTHESIS
28
set CELL_WALL_CELLULOSE_SYNTHESIS
setSize 12
pANOVA 0.000273
s.dist 0.607
p.adjustANOVA 0.00581



Top enriched genes

Top 20 genes
GeneID Gene Rank
CSLC12 9632
KOR 9350
ATCSLA11 8998
CSLA2 8953
CSLA9 8519
CSLC5 7073
CSLC4 6506
CSLA14 6119
CSLC6 5305
CSLC8 4604
PNT1 3013
CSLA10 -6988

Click HERE to show all gene set members

All member genes
GeneID Gene Rank
CSLC12 9632
KOR 9350
ATCSLA11 8998
CSLA2 8953
CSLA9 8519
CSLC5 7073
CSLC4 6506
CSLA14 6119
CSLC6 5305
CSLC8 4604
PNT1 3013
CSLA10 -6988


PROTEIN_SYNTHESIS_RIBOSOMAL_RNA

PROTEIN_SYNTHESIS_RIBOSOMAL_RNA
239
set PROTEIN_SYNTHESIS_RIBOSOMAL_RNA
setSize 12
pANOVA 0.000275
s.dist -0.606
p.adjustANOVA 0.00581



Top enriched genes

Top 20 genes
GeneID Gene Rank
AT2G01020 -10825.5
AT3G41979 -10825.5
RRN23S.1 -10148.5
RRN23S.2 -10148.5
RRN5 -9617.0
AT2G01010 -8564.0
RRN26 -8514.0
RRN16S.1 -7583.5
RRN16S.2 -7583.5
RRN18 -3609.0
AT2G37990 -655.0
AT3G41768 2855.0

Click HERE to show all gene set members

All member genes
GeneID Gene Rank
AT2G01020 -10825.5
AT3G41979 -10825.5
RRN23S.1 -10148.5
RRN23S.2 -10148.5
RRN5 -9617.0
AT2G01010 -8564.0
RRN26 -8514.0
RRN16S.1 -7583.5
RRN16S.2 -7583.5
RRN18 -3609.0
AT2G37990 -655.0
AT3G41768 2855.0


AMINO_ACID_METABOLISM_DEGRADATION_SERINE-GLYCINE-CYSTEINE_GROUP_GLYCINE

AMINO_ACID_METABOLISM_DEGRADATION_SERINE-GLYCINE-CYSTEINE_GROUP_GLYCINE
5
set AMINO_ACID_METABOLISM_DEGRADATION_SERINE-GLYCINE-CYSTEINE_GROUP_GLYCINE
setSize 5
pANOVA 0.0207
s.dist -0.598
p.adjustANOVA 0.112



Top enriched genes

Top 20 genes
GeneID Gene Rank
AT1G72190 -10265
HPR -10098
THA1 -9887
THA2 -5177
AT1G11860 383

Click HERE to show all gene set members

All member genes
GeneID Gene Rank
AT1G72190 -10265
HPR -10098
THA1 -9887
THA2 -5177
AT1G11860 383


SIGNALLING_RECEPTOR_KINASES_LEUCINE_RICH_REPEAT_X

SIGNALLING_RECEPTOR_KINASES_LEUCINE_RICH_REPEAT_X
387
set SIGNALLING_RECEPTOR_KINASES_LEUCINE_RICH_REPEAT_X
setSize 12
pANOVA 0.000343
s.dist 0.597
p.adjustANOVA 0.00692



Top enriched genes

Top 20 genes
GeneID Gene Rank
PSY1R 8651
PSKR2 8336
AT1G69990 7168
BIR2 6744
PSKR1 6545
PXC3 6208
BIR1 6038
BRL1 5852
EMS1 4836
AT1G27190 4112
AT5G42440 2786
AT1G34420 2541

Click HERE to show all gene set members

All member genes
GeneID Gene Rank
PSY1R 8651
PSKR2 8336
AT1G69990 7168
BIR2 6744
PSKR1 6545
PXC3 6208
BIR1 6038
BRL1 5852
EMS1 4836
AT1G27190 4112
AT5G42440 2786
AT1G34420 2541


SIGNALLING_RECEPTOR_KINASES_LEUCINE_RICH_REPEAT_I

SIGNALLING_RECEPTOR_KINASES_LEUCINE_RICH_REPEAT_I
379
set SIGNALLING_RECEPTOR_KINASES_LEUCINE_RICH_REPEAT_I
setSize 19
pANOVA 7.42e-06
s.dist 0.594
p.adjustANOVA 0.000316



Top enriched genes

Top 20 genes
GeneID Gene Rank
CRLK1 10022
SIRK 9932
AT2G14510 9007
AT3G21340 8922
AT1G07550 8817
RHS16 8266
AT1G51620 7599
AT5G59660 7537
AT4G29450 7405
CRLK2 6193
AT3G46420 5238
AT2G37050 5037
AT5G59650 4381
AT1G07560 3960
AT5G59680 3211
AT5G48740 2651
AT3G46410 1807
AT5G59670 586
AT4G29990 -710

Click HERE to show all gene set members

All member genes
GeneID Gene Rank
CRLK1 10022
SIRK 9932
AT2G14510 9007
AT3G21340 8922
AT1G07550 8817
RHS16 8266
AT1G51620 7599
AT5G59660 7537
AT4G29450 7405
CRLK2 6193
AT3G46420 5238
AT2G37050 5037
AT5G59650 4381
AT1G07560 3960
AT5G59680 3211
AT5G48740 2651
AT3G46410 1807
AT5G59670 586
AT4G29990 -710


BIODEGRADATION_OF_XENOBIOTICS_LACTOYLGLUTATHIONE_LYASE

BIODEGRADATION_OF_XENOBIOTICS_LACTOYLGLUTATHIONE_LYASE
18
set BIODEGRADATION_OF_XENOBIOTICS_LACTOYLGLUTATHIONE_LYASE
setSize 9
pANOVA 0.00249
s.dist -0.582
p.adjustANOVA 0.0257



Top enriched genes

Top 20 genes
GeneID Gene Rank
AT1G15380 -11271
AT1G80160 -10597
AT5G57040 -9742
AT5G41650 -7953
AT2G32090 -7055
AT1G64185 -7045
AT1G08110 -5791
AT1G67280 -4880
ATGLX1 2752

Click HERE to show all gene set members

All member genes
GeneID Gene Rank
AT1G15380 -11271
AT1G80160 -10597
AT5G57040 -9742
AT5G41650 -7953
AT2G32090 -7055
AT1G64185 -7045
AT1G08110 -5791
AT1G67280 -4880
ATGLX1 2752


TRANSPORT_P-_AND_V-ATPASES_H+-TRANSPORTING_TWO-SECTOR_ATPASE

TRANSPORT_P-_AND_V-ATPASES_H+-TRANSPORTING_TWO-SECTOR_ATPASE
436
set TRANSPORT_P-_AND_V-ATPASES_H+-TRANSPORTING_TWO-SECTOR_ATPASE
setSize 7
pANOVA 0.0083
s.dist 0.576
p.adjustANOVA 0.0658



Top enriched genes

Top 20 genes
GeneID Gene Rank
VHA-c3 9134
VHA-D1 7666
VHA-D2 7018
VHA-F 6670
VHA-C2 6377
VHA-E3 1847
AVA-P4 462

Click HERE to show all gene set members

All member genes
GeneID Gene Rank
VHA-c3 9134
VHA-D1 7666
VHA-D2 7018
VHA-F 6670
VHA-C2 6377
VHA-E3 1847
AVA-P4 462


CELL_WALL_HEMICELLULOSE_SYNTHESIS_GLUCURONOXYLAN

CELL_WALL_HEMICELLULOSE_SYNTHESIS_GLUCURONOXYLAN
38
set CELL_WALL_HEMICELLULOSE_SYNTHESIS_GLUCURONOXYLAN
setSize 9
pANOVA 0.00279
s.dist 0.576
p.adjustANOVA 0.0275



Top enriched genes

Top 20 genes
GeneID Gene Rank
PGSIP3 8921
GUX3 8470
GATL1 8318
GAUT12 7588
F8H 6319
IRX9 5497
IRX14 5330
GUX1 4106
IRX7 -4240

Click HERE to show all gene set members

All member genes
GeneID Gene Rank
PGSIP3 8921
GUX3 8470
GATL1 8318
GAUT12 7588
F8H 6319
IRX9 5497
IRX14 5330
GUX1 4106
IRX7 -4240


SIGNALLING_RECEPTOR_KINASES_LEUCINE_RICH_REPEAT_V

SIGNALLING_RECEPTOR_KINASES_LEUCINE_RICH_REPEAT_V
382
set SIGNALLING_RECEPTOR_KINASES_LEUCINE_RICH_REPEAT_V
setSize 8
pANOVA 0.00522
s.dist 0.57
p.adjustANOVA 0.0437



Top enriched genes

Top 20 genes
GeneID Gene Rank
SUB 9130
SRF7 8762
SRF3 8335
SRF8 8109
SRF6 7596
SRF2 4761
SRF1 2294
SRF4 -4716

Click HERE to show all gene set members

All member genes
GeneID Gene Rank
SUB 9130
SRF7 8762
SRF3 8335
SRF8 8109
SRF6 7596
SRF2 4761
SRF1 2294
SRF4 -4716


AMINO_ACID_METABOLISM_MISC

AMINO_ACID_METABOLISM_MISC
6
set AMINO_ACID_METABOLISM_MISC
setSize 5
pANOVA 0.0291
s.dist 0.564
p.adjustANOVA 0.136



Top enriched genes

Top 20 genes
GeneID Gene Rank
ACR3 10024
ACR5 9525
MTK 8900
ACR4 4063
ACR8 -5195

Click HERE to show all gene set members

All member genes
GeneID Gene Rank
ACR3 10024
ACR5 9525
MTK 8900
ACR4 4063
ACR8 -5195


CELL_WALL_PRECURSOR_SYNTHESIS_UXS

CELL_WALL_PRECURSOR_SYNTHESIS_UXS
42
set CELL_WALL_PRECURSOR_SYNTHESIS_UXS
setSize 6
pANOVA 0.022
s.dist 0.54
p.adjustANOVA 0.115



Top enriched genes

Top 20 genes
GeneID Gene Rank
UXS3 8078
UXS6 7563
UXS5 6234
UXS2 3973
UXS4 3146
UXS1 2256

Click HERE to show all gene set members

All member genes
GeneID Gene Rank
UXS3 8078
UXS6 7563
UXS5 6234
UXS2 3973
UXS4 3146
UXS1 2256


RNA_REGULATION_OF_TRANSCRIPTION_ARF,_AUXIN_RESPONSE_FACTOR_FAMILY

RNA_REGULATION_OF_TRANSCRIPTION_ARF,_AUXIN_RESPONSE_FACTOR_FAMILY
284
set RNA_REGULATION_OF_TRANSCRIPTION_ARF,_AUXIN_RESPONSE_FACTOR_FAMILY
setSize 16
pANOVA 0.00019
s.dist 0.539
p.adjustANOVA 0.00468



Top enriched genes

Top 20 genes
GeneID Gene Rank
ARF20 10135
ARF18 10127
ARF14 10009
ARF16 9768
ARF11 9405
ARF9 9373
ARF4 6362
ARF3 5522
ARF19 5268
ARF10 4901
ARF1 4018
ARF6 3833
ARF8 2794
ARF17 2180
ARF2 331
ARF5 -10914

Click HERE to show all gene set members

All member genes
GeneID Gene Rank
ARF20 10135
ARF18 10127
ARF14 10009
ARF16 9768
ARF11 9405
ARF9 9373
ARF4 6362
ARF3 5522
ARF19 5268
ARF10 4901
ARF1 4018
ARF6 3833
ARF8 2794
ARF17 2180
ARF2 331
ARF5 -10914


LIPID_METABOLISM_LIPID_TRANSFER_PROTEINS_ETC

LIPID_METABOLISM_LIPID_TRANSFER_PROTEINS_ETC
106
set LIPID_METABOLISM_LIPID_TRANSFER_PROTEINS_ETC
setSize 13
pANOVA 0.000814
s.dist -0.536
p.adjustANOVA 0.0113



Top enriched genes

Top 20 genes
GeneID Gene Rank
LTP3 -11204
LTP1 -11117
LTP2 -10863
LTP4 -10836
LTPG1 -10627
LTP6 -10253
LTP10 -9249
CP5 -7066
LTP7 -5571
LTP5 -4289
GLTP1 -2583
AT2G44300 1611
GLTP3 9524

Click HERE to show all gene set members

All member genes
GeneID Gene Rank
LTP3 -11204
LTP1 -11117
LTP2 -10863
LTP4 -10836
LTPG1 -10627
LTP6 -10253
LTP10 -9249
CP5 -7066
LTP7 -5571
LTP5 -4289
GLTP1 -2583
AT2G44300 1611
GLTP3 9524


CELL_WALL_CELLULOSE_SYNTHESIS_COBRA

CELL_WALL_CELLULOSE_SYNTHESIS_COBRA
30
set CELL_WALL_CELLULOSE_SYNTHESIS_COBRA
setSize 7
pANOVA 0.0144
s.dist 0.534
p.adjustANOVA 0.0915



Top enriched genes

Top 20 genes
GeneID Gene Rank
COB 9732
COBL5 8696
COBL3 8576
COBL7 8405
COBL4 5428
COBL8 2668
COBL1 -7486

Click HERE to show all gene set members

All member genes
GeneID Gene Rank
COB 9732
COBL5 8696
COBL3 8576
COBL7 8405
COBL4 5428
COBL8 2668
COBL1 -7486


PS_LIGHTREACTION_PHOTOSYSTEM_I_LHC-I

PS_LIGHTREACTION_PHOTOSYSTEM_I_LHC-I
264
set PS_LIGHTREACTION_PHOTOSYSTEM_I_LHC-I
setSize 7
pANOVA 0.0144
s.dist -0.534
p.adjustANOVA 0.0915



Top enriched genes

Top 20 genes
GeneID Gene Rank
LHCA3 -9856
LHCA2 -9789
LHCA1 -9780
LHCA4 -9520
LHCA6 -8620
LHCA5 -1225
OHP2 4514

Click HERE to show all gene set members

All member genes
GeneID Gene Rank
LHCA3 -9856
LHCA2 -9789
LHCA1 -9780
LHCA4 -9520
LHCA6 -8620
LHCA5 -1225
OHP2 4514


NOT_ASSIGNED_NO_ONTOLOGY_LATE_EMBRYOGENESIS_ABUNDANT_DOMAIN-CONTAINING_PROTEIN

NOT_ASSIGNED_NO_ONTOLOGY_LATE_EMBRYOGENESIS_ABUNDANT_DOMAIN-CONTAINING_PROTEIN
174
set NOT_ASSIGNED_NO_ONTOLOGY_LATE_EMBRYOGENESIS_ABUNDANT_DOMAIN-CONTAINING_PROTEIN
setSize 6
pANOVA 0.0246
s.dist -0.53
p.adjustANOVA 0.126



Top enriched genes

Top 20 genes
GeneID Gene Rank
AT3G17520 -10812
AT1G72100 -9474
AT2G03850 -8961
AT2G42560 -8614
AT4G36600 -3150
AT4G13230 3326

Click HERE to show all gene set members

All member genes
GeneID Gene Rank
AT3G17520 -10812
AT1G72100 -9474
AT2G03850 -8961
AT2G42560 -8614
AT4G36600 -3150
AT4G13230 3326


RNA_REGULATION_OF_TRANSCRIPTION_NUCLEOSOME/CHROMATIN_ASSEMBLY_FACTOR_GROUP

RNA_REGULATION_OF_TRANSCRIPTION_NUCLEOSOME/CHROMATIN_ASSEMBLY_FACTOR_GROUP
323
set RNA_REGULATION_OF_TRANSCRIPTION_NUCLEOSOME/CHROMATIN_ASSEMBLY_FACTOR_GROUP
setSize 13
pANOVA 0.00108
s.dist -0.524
p.adjustANOVA 0.0133



Top enriched genes

Top 20 genes
GeneID Gene Rank
HMGB2 -10128
HMGB3 -9439
HMGB9 -8212
HMGB1 -7875
HMGB12 -7099
HMGB7 -7037
HMGB10 -6716
FAS2 -6262
HMGB4 -6029
HMGB5 -5420
HMGB6 -4560
AT5G08630 -1609
SSRP1 -368

Click HERE to show all gene set members

All member genes
GeneID Gene Rank
HMGB2 -10128
HMGB3 -9439
HMGB9 -8212
HMGB1 -7875
HMGB12 -7099
HMGB7 -7037
HMGB10 -6716
FAS2 -6262
HMGB4 -6029
HMGB5 -5420
HMGB6 -4560
AT5G08630 -1609
SSRP1 -368


STRESS_BIOTIC_RESPIRATORY_BURST

STRESS_BIOTIC_RESPIRATORY_BURST
411
set STRESS_BIOTIC_RESPIRATORY_BURST
setSize 8
pANOVA 0.0107
s.dist 0.521
p.adjustANOVA 0.0802



Top enriched genes

Top 20 genes
GeneID Gene Rank
RBOHI 9737
RBOHG 9620
RBOHE 8700
RBOHC 7466
RBOHB 7026
RBOHF 4174
RBOHA 2421
RBOHD -9076

Click HERE to show all gene set members

All member genes
GeneID Gene Rank
RBOHI 9737
RBOHG 9620
RBOHE 8700
RBOHC 7466
RBOHB 7026
RBOHF 4174
RBOHA 2421
RBOHD -9076


PROTEIN_POSTRANSLATIONAL_MODIFICATION_KINASE_RECEPTOR_LIKE_CYTOPLASMATIC_KINASE_II

PROTEIN_POSTRANSLATIONAL_MODIFICATION_KINASE_RECEPTOR_LIKE_CYTOPLASMATIC_KINASE_II
222
set PROTEIN_POSTRANSLATIONAL_MODIFICATION_KINASE_RECEPTOR_LIKE_CYTOPLASMATIC_KINASE_II
setSize 5
pANOVA 0.0439
s.dist 0.52
p.adjustANOVA 0.168



Top enriched genes

Top 20 genes
GeneID Gene Rank
AT5G01060 8972
BSK5 7578
BSK1 6688
AT5G25440 5642
AT5G11410 -3892

Click HERE to show all gene set members

All member genes
GeneID Gene Rank
AT5G01060 8972
BSK5 7578
BSK1 6688
AT5G25440 5642
AT5G11410 -3892


AMINO_ACID_METABOLISM_DEGRADATION_AROMATIC_AA_TYROSINE

AMINO_ACID_METABOLISM_DEGRADATION_AROMATIC_AA_TYROSINE
2
set AMINO_ACID_METABOLISM_DEGRADATION_AROMATIC_AA_TYROSINE
setSize 7
pANOVA 0.0189
s.dist -0.513
p.adjustANOVA 0.109



Top enriched genes

Top 20 genes
GeneID Gene Rank
AT4G28410 -10841
AT5G53970 -10791
AT4G15940 -9357
FAH -8163
HGO -7760
FAHD2 -2448
SUR1 6697

Click HERE to show all gene set members

All member genes
GeneID Gene Rank
AT4G28410 -10841
AT5G53970 -10791
AT4G15940 -9357
FAH -8163
HGO -7760
FAHD2 -2448
SUR1 6697


PROTEIN_POSTRANSLATIONAL_MODIFICATION_KINASE_RECEPTOR_LIKE_CYTOPLASMATIC_KINASE_V

PROTEIN_POSTRANSLATIONAL_MODIFICATION_KINASE_RECEPTOR_LIKE_CYTOPLASMATIC_KINASE_V
224
set PROTEIN_POSTRANSLATIONAL_MODIFICATION_KINASE_RECEPTOR_LIKE_CYTOPLASMATIC_KINASE_V
setSize 8
pANOVA 0.0126
s.dist 0.509
p.adjustANOVA 0.0874



Top enriched genes

Top 20 genes
GeneID Gene Rank
AT4G34500 9842
AT5G18500 9733
AT1G56720 9266
GPK1 6916
AT1G09440 6330
AT3G59110 3276
AT2G42960 -184
AT1G01540 -6154

Click HERE to show all gene set members

All member genes
GeneID Gene Rank
AT4G34500 9842
AT5G18500 9733
AT1G56720 9266
GPK1 6916
AT1G09440 6330
AT3G59110 3276
AT2G42960 -184
AT1G01540 -6154


SECONDARY_METABOLISM_PHENYLPROPANOIDS_LIGNIN_BIOSYNTHESIS_CAD

SECONDARY_METABOLISM_PHENYLPROPANOIDS_LIGNIN_BIOSYNTHESIS_CAD
356
set SECONDARY_METABOLISM_PHENYLPROPANOIDS_LIGNIN_BIOSYNTHESIS_CAD
setSize 8
pANOVA 0.0132
s.dist -0.506
p.adjustANOVA 0.0874



Top enriched genes

Top 20 genes
GeneID Gene Rank
CAD9 -11069
CAD5 -10342
CAD8 -9687
CAD2 -8374
CAD6 -7800
CAD7 -6763
CAD1 -2822
CAD4 8661

Click HERE to show all gene set members

All member genes
GeneID Gene Rank
CAD9 -11069
CAD5 -10342
CAD8 -9687
CAD2 -8374
CAD6 -7800
CAD7 -6763
CAD1 -2822
CAD4 8661


SECONDARY_METABOLISM_PHENYLPROPANOIDS_LIGNIN_BIOSYNTHESIS_CCR1

SECONDARY_METABOLISM_PHENYLPROPANOIDS_LIGNIN_BIOSYNTHESIS_CCR1
358
set SECONDARY_METABOLISM_PHENYLPROPANOIDS_LIGNIN_BIOSYNTHESIS_CCR1
setSize 5
pANOVA 0.0555
s.dist -0.494
p.adjustANOVA 0.181



Top enriched genes

Top 20 genes
GeneID Gene Rank
AT4G30470 -10938
CCR2 -10307
AT5G14700 -10288
AT5G58490 -7029
CCR1 9055

Click HERE to show all gene set members

All member genes
GeneID Gene Rank
AT4G30470 -10938
CCR2 -10307
AT5G14700 -10288
AT5G58490 -7029
CCR1 9055


AMINO_ACID_METABOLISM_SYNTHESIS_CENTRAL_AMINO_ACID_METABOLISM_GABA_GLUTAMATE_DECARBOXYLASE

AMINO_ACID_METABOLISM_SYNTHESIS_CENTRAL_AMINO_ACID_METABOLISM_GABA_GLUTAMATE_DECARBOXYLASE
14
set AMINO_ACID_METABOLISM_SYNTHESIS_CENTRAL_AMINO_ACID_METABOLISM_GABA_GLUTAMATE_DECARBOXYLASE
setSize 5
pANOVA 0.0573
s.dist 0.491
p.adjustANOVA 0.184



Top enriched genes

Top 20 genes
GeneID Gene Rank
GAD2 9140
GAD3 7285
GAD4 6266
GAD1 2322
GAD5 -1602

Click HERE to show all gene set members

All member genes
GeneID Gene Rank
GAD2 9140
GAD3 7285
GAD4 6266
GAD1 2322
GAD5 -1602


CELL_CELL_DEATH_PLANTS

CELL_CELL_DEATH_PLANTS
21
set CELL_CELL_DEATH_PLANTS
setSize 6
pANOVA 0.0389
s.dist -0.487
p.adjustANOVA 0.161



Top enriched genes

Top 20 genes
GeneID Gene Rank
PAO -10245
ACD6 -8637
AT5G64830 -7148
CPP1 -3586
CAD1 -2822
ACD11 -2483

Click HERE to show all gene set members

All member genes
GeneID Gene Rank
PAO -10245
ACD6 -8637
AT5G64830 -7148
CPP1 -3586
CAD1 -2822
ACD11 -2483


SECONDARY_METABOLISM_FLAVONOIDS_FLAVONOLS

SECONDARY_METABOLISM_FLAVONOIDS_FLAVONOLS
346
set SECONDARY_METABOLISM_FLAVONOIDS_FLAVONOLS
setSize 8
pANOVA 0.0173
s.dist 0.486
p.adjustANOVA 0.102



Top enriched genes

Top 20 genes
GeneID Gene Rank
AT4G25310 9825
AT1G49390 9453
AT4G25300 9322
AT3G21420 7311
AT3G50210 6977
FLDH 5569
AT3G60290 -532
SRG1 -10890

Click HERE to show all gene set members

All member genes
GeneID Gene Rank
AT4G25310 9825
AT1G49390 9453
AT4G25300 9322
AT3G21420 7311
AT3G50210 6977
FLDH 5569
AT3G60290 -532
SRG1 -10890


SECONDARY_METABOLISM_SIMPLE_PHENOLS

SECONDARY_METABOLISM_SIMPLE_PHENOLS
359
set SECONDARY_METABOLISM_SIMPLE_PHENOLS
setSize 16
pANOVA 0.000808
s.dist 0.484
p.adjustANOVA 0.0113



Top enriched genes

Top 20 genes
GeneID Gene Rank
LAC7 9844
LAC8 9408
LAC13 8375
LAC3 8057
LAC2 7570
LAC5 6999
IRX12 6950
LAC17 6878
LAC11 6347
LAC1 5741
IGMT5 5193
LAC16 4985
LAC6 2772
LAC10 -988
AT1G33030 -5488
LAC12 -9014

Click HERE to show all gene set members

All member genes
GeneID Gene Rank
LAC7 9844
LAC8 9408
LAC13 8375
LAC3 8057
LAC2 7570
LAC5 6999
IRX12 6950
LAC17 6878
LAC11 6347
LAC1 5741
IGMT5 5193
LAC16 4985
LAC6 2772
LAC10 -988
AT1G33030 -5488
LAC12 -9014


CELL_WALL_DEGRADATION_CELLULASES_AND_BETA_-1,4-GLUCANASES

CELL_WALL_DEGRADATION_CELLULASES_AND_BETA_-1,4-GLUCANASES
34
set CELL_WALL_DEGRADATION_CELLULASES_AND_BETA_-1,4-GLUCANASES
setSize 9
pANOVA 0.0126
s.dist 0.48
p.adjustANOVA 0.0874



Top enriched genes

Top 20 genes
GeneID Gene Rank
AT3G47000 9533
AtGH9B8 8889
AtGH9B5 8756
AT3G47040 7718
CEL5 5793
BGLU7 5214
AT3G47050 3894
AT5G20950 -1039
AT3G47010 -7675

Click HERE to show all gene set members

All member genes
GeneID Gene Rank
AT3G47000 9533
AtGH9B8 8889
AtGH9B5 8756
AT3G47040 7718
CEL5 5793
BGLU7 5214
AT3G47050 3894
AT5G20950 -1039
AT3G47010 -7675


HORMONE_METABOLISM_GIBBERELIN_SIGNAL_TRANSDUCTION

HORMONE_METABOLISM_GIBBERELIN_SIGNAL_TRANSDUCTION
81
set HORMONE_METABOLISM_GIBBERELIN_SIGNAL_TRANSDUCTION
setSize 8
pANOVA 0.0187
s.dist 0.48
p.adjustANOVA 0.109



Top enriched genes

Top 20 genes
GeneID Gene Rank
RGA 9337
GID1A 8680
GID1C 8460
GID1B 7823
RGL1 5928
AT1G10588 4044
SPY 2779
PUB21 -10533

Click HERE to show all gene set members

All member genes
GeneID Gene Rank
RGA 9337
GID1A 8680
GID1C 8460
GID1B 7823
RGL1 5928
AT1G10588 4044
SPY 2779
PUB21 -10533


TCA_/_ORG_TRANSFORMATION_OTHER_ORGANIC_ACID_TRANSFORMATONS_ATP-CITRATE_LYASE

TCA_/_ORG_TRANSFORMATION_OTHER_ORGANIC_ACID_TRANSFORMATONS_ATP-CITRATE_LYASE
415
set TCA_/_ORG_TRANSFORMATION_OTHER_ORGANIC_ACID_TRANSFORMATONS_ATP-CITRATE_LYASE
setSize 5
pANOVA 0.0646
s.dist 0.477
p.adjustANOVA 0.196



Top enriched genes

Top 20 genes
GeneID Gene Rank
ACLA-3 9213
ACLA-1 6584
ACLB-1 5841
ACLB-2 1693
ACLA-2 -654

Click HERE to show all gene set members

All member genes
GeneID Gene Rank
ACLA-3 9213
ACLA-1 6584
ACLB-1 5841
ACLB-2 1693
ACLA-2 -654


NOT_ASSIGNED_NO_ONTOLOGY_DC1_DOMAIN_CONTAINING_PROTEIN

NOT_ASSIGNED_NO_ONTOLOGY_DC1_DOMAIN_CONTAINING_PROTEIN
169
set NOT_ASSIGNED_NO_ONTOLOGY_DC1_DOMAIN_CONTAINING_PROTEIN
setSize 108
pANOVA 3.09e-17
s.dist 0.47
p.adjustANOVA 1.37e-14



Top enriched genes

Top 20 genes
GeneID Gene Rank
AT5G40590 10116
AT3G07000 9972
AT1G29180 9952
AT3G46810 9950
AT3G46800 9934
AT5G45730 9910
AT4G13130 9875
AT2G27660 9867
AT2G02610 9865
AT2G37780 9817
AT1G44050 9807
AT1G44020 9748
AT1G66440 9727
AT2G43220 9680
AT1G55390 9665
AT4G14980 9446
AT2G13900 9439
AT2G13950 9390
AT3G13760 9339
AT3G59130 9227

Click HERE to show all gene set members

All member genes
GeneID Gene Rank
AT5G40590 10116
AT3G07000 9972
AT1G29180 9952
AT3G46810 9950
AT3G46800 9934
AT5G45730 9910
AT4G13130 9875
AT2G27660 9867
AT2G02610 9865
AT2G37780 9817
AT1G44050 9807
AT1G44020 9748
AT1G66440 9727
AT2G43220 9680
AT1G55390 9665
AT4G14980 9446
AT2G13900 9439
AT2G13950 9390
AT3G13760 9339
AT3G59130 9227
AT3G43890 9201
AT1G55430 9172
AT2G44380 9143
AT5G42280 9112
AT5G02360 9086
AT5G59930 9040
AT2G02640 9035
AT1G55440 9030
AT5G37210 8912
AT5G03360 8911
AT1G61840 8843
AT4G02180 8738
AT3G27490 8718
AT2G02700 8703
AT4G01350 8684
AT1G55700 8647
AT2G23100 8544
AT5G59940 8378
AT2G37820 8347
AT4G02540 8289
AT3G26240 8275
AT3G45530 8258
AT2G44370 8070
AT4G01925 8020
AT5G55770 7883
AT4G01910 7851
AT2G21830 7719
AT5G42840 7545
AT1G69150 7522
AT3G28650 7378
AT5G02340 7223
AT3G27510 7207
AT1G55380 7058
AT4G15070 6948
AT3G06990 6851
AT3G11402 6523
AT3G50010 6464
AT5G43520 6395
AT2G02680 6135
AT5G54030 6094
AT2G02630 6051
AT4G10370 5708
AT4G11540 5624
AT2G17590 5471
AT2G19660 5264
AT3G11390 5173
AT5G54050 4984
AT4G11550 4540
AT2G16050 4499
AT1G65180 4481
AT5G54040 4458
AT5G55780 3983
AT3G27480 3665
AT4G16015 3657
AT3G27473 3627
AT2G04680 3128
AT3G27500 2358
AT3G45840 2072
AT3G11385 1247
AT5G02350 1218
AT1G66450 1037
AT3G59120 1036
AT5G26190 315
AT5G44770 60
AT1G60420 34
AT1G35610 -483
AT2G04500 -1129
AT1G61710 -1371
AT2G44400 -2411
AT4G11390 -2618
AT4G26380 -3370
AT5G55800 -3462
AT5G17960 -3875
AT4G02190 -3979
AT3G13590 -4007
AT5G29624 -4189
AT5G01480 -4207
AT1G34480 -4903
AT4G13992 -5124
AT5G40320 -5864
AT2G19650 -7201
AT5G48320 -7854
AT3G26550 -7990
AT5G22355 -8568
AT1G20990 -8743
AT2G40050 -9508
AT1G62030 -9730
AT2G28270 -11109


SIGNALLING_PHOSPHINOSITIDES_PHOSPHOINOSITIDE_PHOSPHOLIPASE_C

SIGNALLING_PHOSPHINOSITIDES_PHOSPHOINOSITIDE_PHOSPHOLIPASE_C
372
set SIGNALLING_PHOSPHINOSITIDES_PHOSPHOINOSITIDE_PHOSPHOLIPASE_C
setSize 9
pANOVA 0.0154
s.dist 0.466
p.adjustANOVA 0.0964



Top enriched genes

Top 20 genes
GeneID Gene Rank
PLC9 9773
PLC2 9142
PLC4 9073
AT4G36945 8904
PLC5 8047
PLC7 7426
PLC1 -639
PLC3 -2326
ATPLC8 -9647

Click HERE to show all gene set members

All member genes
GeneID Gene Rank
PLC9 9773
PLC2 9142
PLC4 9073
AT4G36945 8904
PLC5 8047
PLC7 7426
PLC1 -639
PLC3 -2326
ATPLC8 -9647


SECONDARY_METABOLISM_PHENYLPROPANOIDS_LIGNIN_BIOSYNTHESIS_4CL

SECONDARY_METABOLISM_PHENYLPROPANOIDS_LIGNIN_BIOSYNTHESIS_4CL
355
set SECONDARY_METABOLISM_PHENYLPROPANOIDS_LIGNIN_BIOSYNTHESIS_4CL
setSize 7
pANOVA 0.0328
s.dist 0.466
p.adjustANOVA 0.152



Top enriched genes

Top 20 genes
GeneID Gene Rank
4CL4 8177
4CL1 8085
4CL2 7830
4CLL9 6864
4CL3 4850
4CLL6 -581
4CLL7 -4331

Click HERE to show all gene set members

All member genes
GeneID Gene Rank
4CL4 8177
4CL1 8085
4CL2 7830
4CLL9 6864
4CL3 4850
4CLL6 -581
4CLL7 -4331


PS_CALVIN_CYCLE_RUBISCO_INTERACTING

PS_CALVIN_CYCLE_RUBISCO_INTERACTING
258
set PS_CALVIN_CYCLE_RUBISCO_INTERACTING
setSize 6
pANOVA 0.0481
s.dist -0.466
p.adjustANOVA 0.172



Top enriched genes

Top 20 genes
GeneID Gene Rank
RCA -9773
AT1G73110 -7999
LSMT-L -7794
CPN60B1 -7272
PTAC14 -2395
CPN60A1 1667

Click HERE to show all gene set members

All member genes
GeneID Gene Rank
RCA -9773
AT1G73110 -7999
LSMT-L -7794
CPN60B1 -7272
PTAC14 -2395
CPN60A1 1667


LIPID_METABOLISM_PHOSPHOLIPID_SYNTHESIS_DIACYLGLYCEROL_KINASE

LIPID_METABOLISM_PHOSPHOLIPID_SYNTHESIS_DIACYLGLYCEROL_KINASE
109
set LIPID_METABOLISM_PHOSPHOLIPID_SYNTHESIS_DIACYLGLYCEROL_KINASE
setSize 6
pANOVA 0.0507
s.dist 0.461
p.adjustANOVA 0.177



Top enriched genes

Top 20 genes
GeneID Gene Rank
DGK3 9660
DGK2 7822
SPHK2 6552
DGK5 3650
DGK1 -624
DGK7 -924

Click HERE to show all gene set members

All member genes
GeneID Gene Rank
DGK3 9660
DGK2 7822
SPHK2 6552
DGK5 3650
DGK1 -624
DGK7 -924


NOT_ASSIGNED_NO_ONTOLOGY_EPSIN_N-TERMINAL_HOMOLOGY_(ENTH)_DOMAIN-CONTAINING_PROTEIN

NOT_ASSIGNED_NO_ONTOLOGY_EPSIN_N-TERMINAL_HOMOLOGY_(ENTH)_DOMAIN-CONTAINING_PROTEIN
170
set NOT_ASSIGNED_NO_ONTOLOGY_EPSIN_N-TERMINAL_HOMOLOGY_(ENTH)_DOMAIN-CONTAINING_PROTEIN
setSize 18
pANOVA 0.00072
s.dist 0.46
p.adjustANOVA 0.0112



Top enriched genes

Top 20 genes
GeneID Gene Rank
AT5G10410 9192
AT4G40080 7627
AT5G57200 7623
AT5G35200 6805
AT1G08670 6564
EPSIN2 6021
EPSIN1 5830
AT1G25240 5771
AT2G25430 5646
AP180 5554
AT1G14910 4814
AT4G32285 4767
AT1G33340 2983
AT3G46540 2471
AT4G25940 1855
EPSIN3 1767
AT2G01600 1142
AT4G02650 -8112

Click HERE to show all gene set members

All member genes
GeneID Gene Rank
AT5G10410 9192
AT4G40080 7627
AT5G57200 7623
AT5G35200 6805
AT1G08670 6564
EPSIN2 6021
EPSIN1 5830
AT1G25240 5771
AT2G25430 5646
AP180 5554
AT1G14910 4814
AT4G32285 4767
AT1G33340 2983
AT3G46540 2471
AT4G25940 1855
EPSIN3 1767
AT2G01600 1142
AT4G02650 -8112


LIPID_METABOLISM_EXOTICS_(STEROIDS,_SQUALENE_ETC)_SPHINGOLIPIDS

LIPID_METABOLISM_EXOTICS_(STEROIDS,_SQUALENE_ETC)_SPHINGOLIPIDS
89
set LIPID_METABOLISM_EXOTICS_(STEROIDS,_SQUALENE_ETC)_SPHINGOLIPIDS
setSize 20
pANOVA 0.000406
s.dist 0.457
p.adjustANOVA 0.00784



Top enriched genes

Top 20 genes
GeneID Gene Rank
TSC10B 10017
DES-1-LIKE 9710
LPPD 9098
AT3G06060 8656
SBH2 8554
DPL1 8386
AT3G06470 7196
SLD1 6901
SBH1 6662
LAG1 4988
LAG13 4982
ATLCBK1 4940
LAG2 4629
AT3G06460 4050
ATCES1 3344
LCB1 3342
SPHK1 112
SLD2 -3203
ARV1 -6176
AT1G75000 -9972

Click HERE to show all gene set members

All member genes
GeneID Gene Rank
TSC10B 10017
DES-1-LIKE 9710
LPPD 9098
AT3G06060 8656
SBH2 8554
DPL1 8386
AT3G06470 7196
SLD1 6901
SBH1 6662
LAG1 4988
LAG13 4982
ATLCBK1 4940
LAG2 4629
AT3G06460 4050
ATCES1 3344
LCB1 3342
SPHK1 112
SLD2 -3203
ARV1 -6176
AT1G75000 -9972


Here is the session info with all the versions of packages used.

sessionInfo()
## R version 4.0.3 (2020-10-10)
## Platform: x86_64-pc-linux-gnu (64-bit)
## Running under: Ubuntu 20.04.2 LTS
## 
## Matrix products: default
## BLAS:   /usr/lib/x86_64-linux-gnu/blas/libblas.so.3.9.0
## LAPACK: /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3.9.0
## 
## locale:
##  [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C              
##  [3] LC_TIME=en_US.UTF-8        LC_COLLATE=en_US.UTF-8    
##  [5] LC_MONETARY=en_US.UTF-8    LC_MESSAGES=en_US.UTF-8   
##  [7] LC_PAPER=en_US.UTF-8       LC_NAME=C                 
##  [9] LC_ADDRESS=C               LC_TELEPHONE=C            
## [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C       
## 
## attached base packages:
## [1] parallel  stats4    stats     graphics  grDevices utils     datasets 
## [8] methods   base     
## 
## other attached packages:
##  [1] pkgload_1.2.0               GGally_2.1.1               
##  [3] ggplot2_3.3.3               beeswarm_0.3.1             
##  [5] gtools_3.8.2                tibble_3.1.0               
##  [7] dplyr_1.0.5                 echarts4r_0.4.0            
##  [9] vioplot_0.3.5               zoo_1.8-9                  
## [11] sm_2.2-5.6                  UpSetR_1.4.0               
## [13] eulerr_6.1.0                kableExtra_1.3.4           
## [15] mitch_1.2.2                 DESeq2_1.30.0              
## [17] SummarizedExperiment_1.20.0 Biobase_2.50.0             
## [19] MatrixGenerics_1.2.0        matrixStats_0.58.0         
## [21] GenomicRanges_1.42.0        GenomeInfoDb_1.26.0        
## [23] IRanges_2.24.0              S4Vectors_0.28.0           
## [25] BiocGenerics_0.36.0         gplots_3.1.1               
## [27] reshape2_1.4.4             
## 
## loaded via a namespace (and not attached):
##  [1] colorspace_2.0-0       ellipsis_0.3.1         rprojroot_2.0.2       
##  [4] XVector_0.30.0         rstudioapi_0.13        bit64_4.0.5           
##  [7] AnnotationDbi_1.52.0   fansi_0.4.2            xml2_1.3.2            
## [10] splines_4.0.3          cachem_1.0.4           geneplotter_1.68.0    
## [13] knitr_1.31             polyclip_1.10-0        jsonlite_1.7.2        
## [16] annotate_1.68.0        shiny_1.6.0            compiler_4.0.3        
## [19] httr_1.4.2             assertthat_0.2.1       Matrix_1.3-2          
## [22] fastmap_1.1.0          later_1.1.0.1          htmltools_0.5.1.1     
## [25] tools_4.0.3            gtable_0.3.0           glue_1.4.2            
## [28] GenomeInfoDbData_1.2.4 Rcpp_1.0.6             jquerylib_0.1.3       
## [31] vctrs_0.3.6            svglite_2.0.0          polylabelr_0.2.0      
## [34] xfun_0.22              stringr_1.4.0          testthat_3.0.2        
## [37] rvest_1.0.0            mime_0.10              lifecycle_1.0.0       
## [40] XML_3.99-0.6           zlibbioc_1.36.0        MASS_7.3-53.1         
## [43] scales_1.1.1           promises_1.2.0.1       RColorBrewer_1.1-2    
## [46] yaml_2.2.1             memoise_2.0.0          gridExtra_2.3         
## [49] sass_0.3.1             reshape_0.8.8          stringi_1.5.3         
## [52] RSQLite_2.2.4          highr_0.8              genefilter_1.72.0     
## [55] desc_1.3.0             caTools_1.18.1         BiocParallel_1.24.1   
## [58] rlang_0.4.10           pkgconfig_2.0.3        systemfonts_1.0.1     
## [61] bitops_1.0-6           evaluate_0.14          lattice_0.20-41       
## [64] purrr_0.3.4            htmlwidgets_1.5.3      bit_4.0.4             
## [67] tidyselect_1.1.0       plyr_1.8.6             magrittr_2.0.1        
## [70] R6_2.5.0               generics_0.1.0         DelayedArray_0.16.0   
## [73] DBI_1.1.1              withr_2.4.1            pillar_1.5.1          
## [76] survival_3.2-10        RCurl_1.98-1.3         crayon_1.4.1          
## [79] KernSmooth_2.23-18     utf8_1.2.1             rmarkdown_2.7         
## [82] locfit_1.5-9.4         grid_4.0.3             blob_1.2.1            
## [85] digest_0.6.27          webshot_0.5.2          xtable_1.8-4          
## [88] httpuv_1.5.5           munsell_0.5.0          viridisLite_0.3.0     
## [91] bslib_0.2.4            tcltk_4.0.3

END of report