Mitch Report
Antony Kaspi & Mark Ziemann
date generated: 2021-09-03
Background
Mitch performs unidimensional and multidimensional gene set enrichment analysis. The concept behind this dates to work by Cox and Mann (https://doi.org/10.1186/1471-2105-13-S16-S12). This implementation is suited to R based workflows of multi-omics datasets. This software was developed by Antony Kaspi and Mark Ziemann. Learn more about Mitch at the website: https://github.com/markziemann/Mitch
Input profiles
Here is the first few lines of the input profile.
## del3 del5 der3 der5
## AT4G02720 -8.125436 -7.72148549 -1.9811223 -0.3871152
## AT1G80315 8.015142 -0.00267218 -0.3827954 0.9185206
## AT2G02780 6.279646 2.07458854 0.7464578 2.4692916
## AT1G80890 -6.274325 0.42835548 -0.3789169 -2.1720740
## AT4G23680 -6.092344 -8.36865739 -11.1475646 -10.6240253
## AT1G19840 -5.933684 -6.45448729 -1.9891475 -1.5956522| Profile metrics | |
|---|---|
| num_genes_in_profile | 19618 |
| duplicated_genes_present | 0 |
| num_profile_genes_in_sets | 6634 |
| num_profile_genes_not_in_sets | 12984 |
Here is a plot of the input profiles. Note the dynamic ranges. 
Here is the contour plot of the profile including all detected genes. 
Input genesets
Here are some metrics about the gene sets used: GMT file of genesets: ../../ref/Ath_AGI_LOCUS_TAIR10_Aug2012.txt.gmt| Gene sets metrics | |
|---|---|
| num_genesets | 226 |
| num_genesets_excluded | 113 |
| num_genesets_included | 113 |
| del3 | del5 | der3 | der5 | Count | |
|---|---|---|---|---|---|
| 1 | -1 | -1 | -1 | -1 | 3252 |
| 2 | 0 | -1 | -1 | -1 | 1 |
| 3 | 1 | -1 | -1 | -1 | 862 |
| 4 | -1 | 1 | -1 | -1 | 1391 |
| 5 | 1 | 1 | -1 | -1 | 1047 |
| 6 | -1 | -1 | 0 | -1 | 1 |
| 7 | -1 | -1 | 1 | -1 | 1009 |
| 8 | 1 | -1 | 1 | -1 | 495 |
| 9 | -1 | 1 | 1 | -1 | 706 |
| 10 | 1 | 1 | 1 | -1 | 805 |
| 11 | 1 | 1 | -1 | 0 | 1 |
| 12 | -1 | -1 | -1 | 1 | 1034 |
| 13 | 1 | -1 | -1 | 1 | 990 |
| 14 | 1 | 0 | -1 | 1 | 1 |
| 15 | -1 | 1 | -1 | 1 | 661 |
| 16 | 1 | 1 | -1 | 1 | 1330 |
| 17 | -1 | -1 | 1 | 1 | 963 |
| 18 | 1 | -1 | 1 | 1 | 1281 |
| 19 | -1 | 1 | 1 | 1 | 856 |
| 20 | 1 | 1 | 1 | 1 | 2932 |
Gene sets by sector
| s.del3 | s.del5 | s.der3 | s.der5 | Count | |
|---|---|---|---|---|---|
| 1 | -1 | -1 | -1 | -1 | 5 |
| 2 | 1 | -1 | -1 | -1 | 1 |
| 3 | -1 | 1 | -1 | -1 | 7 |
| 4 | 1 | 1 | -1 | -1 | 2 |
| 5 | -1 | -1 | 1 | -1 | 1 |
| 6 | 1 | -1 | 1 | -1 | 2 |
| 7 | -1 | 1 | 1 | -1 | 5 |
| 8 | 1 | 1 | 1 | -1 | 3 |
| 9 | -1 | -1 | -1 | 1 | 5 |
| 10 | 1 | -1 | -1 | 1 | 5 |
| 11 | -1 | 1 | -1 | 1 | 3 |
| 12 | 1 | 1 | -1 | 1 | 6 |
| 13 | -1 | -1 | 1 | 1 | 3 |
| 14 | 1 | -1 | 1 | 1 | 7 |
| 15 | 1 | 1 | 1 | 1 | 11 |
Interactive enrichment scatterplot
All sets with FDR<0.05. Try hovering over the points.
Top N sets irrespective of FDR. Try hovering over the points.
A heatmap of S values for top results
A plot of effect size versus significance
Significance is the -log2(p.adjustMANOVA) and effect size is the s.dist which is the hypotenuse of the s scores.
Results table
Top N= 50 gene sets| set | setSize | pMANOVA | p.adjustMANOVA | s.dist | s.del3 | s.del5 | s.der3 | s.der5 | p.del3 | p.del5 | p.der3 | p.der5 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| transport.sulphate | 12 | 1.64e-06 | 2.33e-05 | 1.340 | -0.57000 | -0.60300 | -0.7420 | -0.75400 | 6.29e-04 | 2.99e-04 | 8.50e-06 | 6.09e-06 |
| protein.synthesis.ribosomal.protein.eukaryotic.60S.subunit.L41 | 5 | 1.39e-03 | 6.73e-03 | 1.180 | -0.90800 | 0.06540 | -0.4920 | -0.55800 | 4.40e-04 | 8.00e-01 | 5.65e-02 | 3.08e-02 |
| cell.wall.cellulose.synthesis | 12 | 7.42e-05 | 5.47e-04 | 1.140 | 0.43300 | 0.47300 | 0.6180 | 0.71200 | 9.43e-03 | 4.54e-03 | 2.11e-04 | 1.93e-05 |
| secondary.metabolism.phenylpropanoids.lignin.biosynthesis.CCR1 | 5 | 2.48e-02 | 6.86e-02 | 1.070 | -0.56700 | -0.02620 | -0.5500 | -0.72400 | 2.81e-02 | 9.19e-01 | 3.33e-02 | 5.02e-03 |
| PS.calvin.cycle.rubisco.interacting | 6 | 1.27e-04 | 8.46e-04 | 1.060 | 0.44100 | 0.81100 | -0.4590 | 0.26600 | 6.13e-02 | 5.80e-04 | 5.15e-02 | 2.60e-01 |
| RNA.regulation.of.transcription.ARF..Auxin.Response.Factor.family | 14 | 2.15e-05 | 1.95e-04 | 1.030 | 0.53700 | 0.11200 | 0.4920 | 0.71800 | 4.99e-04 | 4.70e-01 | 1.43e-03 | 3.27e-06 |
| PS.lightreaction.photosystem.I.PSI.polypeptide.subunits | 16 | 1.15e-14 | 1.14e-12 | 1.030 | 0.05740 | 0.64600 | -0.7970 | 0.02240 | 6.91e-01 | 7.71e-06 | 3.34e-08 | 8.77e-01 |
| transport.ammonium | 6 | 2.33e-02 | 6.71e-02 | 1.000 | 0.21300 | 0.55100 | 0.5700 | 0.57200 | 3.66e-01 | 1.93e-02 | 1.57e-02 | 1.52e-02 |
| PS.lightreaction.photosystem.II.LHC.II | 15 | 7.83e-14 | 5.19e-12 | 0.990 | 0.04290 | 0.55200 | -0.8040 | 0.16300 | 7.73e-01 | 2.15e-04 | 6.87e-08 | 2.75e-01 |
| cell.wall.precursor.synthesis.GAE | 6 | 4.73e-03 | 2.00e-02 | 0.975 | 0.44900 | 0.47600 | 0.7200 | 0.06590 | 5.67e-02 | 4.36e-02 | 2.25e-03 | 7.80e-01 |
| Biodegradation.of.Xenobiotics.lactoylglutathione.lyase | 10 | 1.16e-05 | 1.21e-04 | 0.954 | 0.00606 | 0.38900 | -0.5870 | -0.64400 | 9.74e-01 | 3.33e-02 | 1.32e-03 | 4.21e-04 |
| transport.p..and.v.ATPases.H..transporting.two.sector.ATPase | 8 | 1.18e-07 | 1.81e-06 | 0.936 | -0.02460 | 0.40700 | 0.5570 | -0.63200 | 9.04e-01 | 4.60e-02 | 6.34e-03 | 1.97e-03 |
| PS.lightreaction.photosystem.II.PSII.polypeptide.subunits | 32 | 5.53e-21 | 1.10e-18 | 0.931 | -0.00217 | 0.61900 | -0.6300 | -0.29400 | 9.83e-01 | 1.33e-09 | 6.93e-10 | 4.01e-03 |
| PS.lightreaction.NADH.DH | 9 | 2.49e-05 | 2.16e-04 | 0.928 | -0.16200 | 0.52200 | -0.6330 | -0.40200 | 4.00e-01 | 6.68e-03 | 1.00e-03 | 3.66e-02 |
| protein.synthesis.ribosomal.protein.eukaryotic.40S.subunit.S15A | 5 | 2.48e-02 | 6.86e-02 | 0.916 | -0.73200 | 0.01900 | -0.1900 | -0.51700 | 4.58e-03 | 9.41e-01 | 4.62e-01 | 4.55e-02 |
| cell.wall.pectin.esterases.acetyl.esterase | 11 | 8.68e-03 | 3.26e-02 | 0.912 | 0.42900 | 0.48500 | 0.4010 | 0.50200 | 1.37e-02 | 5.36e-03 | 2.12e-02 | 3.97e-03 |
| cell.wall.cell.wall.proteins.AGPs.AGP | 37 | 6.97e-09 | 1.98e-07 | 0.888 | 0.48200 | 0.37300 | 0.4990 | 0.41100 | 3.85e-07 | 8.63e-05 | 1.52e-07 | 1.52e-05 |
| secondary.metabolism.flavonoids.isoflavones.isoflavone.reductase | 7 | 4.59e-02 | 1.01e-01 | 0.869 | -0.31000 | -0.62400 | -0.3100 | -0.41700 | 1.55e-01 | 4.24e-03 | 1.56e-01 | 5.62e-02 |
| hormone.metabolism.salicylic.acid.synthesis.degradation | 7 | 6.98e-02 | 1.30e-01 | 0.840 | -0.35400 | -0.10900 | -0.5550 | -0.51100 | 1.05e-01 | 6.17e-01 | 1.10e-02 | 1.92e-02 |
| protein.synthesis.ribosome.biogenesis.Pre.rRNA.processing.and.modifications.WD.repeat.proteins | 6 | 3.54e-05 | 2.82e-04 | 0.830 | -0.37700 | 0.24500 | -0.2000 | 0.66800 | 1.10e-01 | 2.99e-01 | 3.96e-01 | 4.57e-03 |
| PS.lightreaction.cyclic.electron.flow.chlororespiration | 9 | 3.37e-03 | 1.49e-02 | 0.813 | 0.04430 | -0.00555 | -0.6300 | -0.51100 | 8.18e-01 | 9.77e-01 | 1.06e-03 | 7.97e-03 |
| PS.lightreaction.photosystem.I.LHC.I | 6 | 1.76e-03 | 8.32e-03 | 0.804 | 0.03220 | 0.61400 | -0.4950 | 0.15200 | 8.91e-01 | 9.23e-03 | 3.56e-02 | 5.20e-01 |
| redox.peroxiredoxin | 5 | 1.45e-02 | 4.62e-02 | 0.798 | -0.39800 | 0.48700 | -0.2260 | -0.43500 | 1.23e-01 | 5.92e-02 | 3.81e-01 | 9.17e-02 |
| secondary.metabolism.phenylpropanoids.lignin.biosynthesis.4CL | 7 | 3.17e-02 | 7.98e-02 | 0.786 | 0.00585 | 0.38000 | 0.4790 | 0.49400 | 9.79e-01 | 8.16e-02 | 2.82e-02 | 2.37e-02 |
| protein.assembly.and.cofactor.ligation | 21 | 4.56e-08 | 9.78e-07 | 0.779 | -0.31600 | 0.34900 | -0.4170 | -0.46000 | 1.21e-02 | 5.61e-03 | 9.27e-04 | 2.65e-04 |
| development.late.embryogenesis.abundant | 15 | 1.07e-02 | 3.82e-02 | 0.764 | -0.33000 | -0.34300 | -0.3770 | -0.46400 | 2.67e-02 | 2.13e-02 | 1.14e-02 | 1.87e-03 |
| transport.Major.Intrinsic.Proteins.TIP | 7 | 8.31e-02 | 1.47e-01 | 0.751 | -0.52300 | -0.22100 | -0.0890 | -0.48300 | 1.66e-02 | 3.11e-01 | 6.83e-01 | 2.68e-02 |
| hormone.metabolism.jasmonate.synthesis.degradation.12.Oxo.PDA.reductase | 5 | 5.54e-02 | 1.15e-01 | 0.750 | 0.16700 | -0.13200 | -0.4380 | -0.57000 | 5.18e-01 | 6.08e-01 | 9.01e-02 | 2.72e-02 |
| nucleotide.metabolism.salvage.phosphoribosyltransferases.upp | 5 | 1.64e-01 | 2.58e-01 | 0.742 | 0.43800 | 0.20500 | 0.0484 | 0.56100 | 9.02e-02 | 4.27e-01 | 8.51e-01 | 3.00e-02 |
| protein.synthesis.ribosome.biogenesis.Pre.rRNA.processing.and.modifications.misc | 9 | 2.79e-03 | 1.26e-02 | 0.728 | -0.47100 | -0.36700 | -0.3970 | 0.12400 | 1.43e-02 | 5.63e-02 | 3.92e-02 | 5.18e-01 |
| PS.lightreaction.other.electron.carrier..ox.red..ferredoxin | 5 | 6.68e-02 | 1.28e-01 | 0.728 | -0.09360 | 0.38900 | -0.3530 | -0.49500 | 7.17e-01 | 1.32e-01 | 1.71e-01 | 5.53e-02 |
| protein.synthesis.ribosome.biogenesis.BRIX | 6 | 1.36e-03 | 6.73e-03 | 0.721 | -0.37800 | -0.19000 | -0.2140 | 0.54400 | 1.09e-01 | 4.21e-01 | 3.64e-01 | 2.10e-02 |
| protein.synthesis.ribosome.biogenesis.Pre.rRNA.processing.and.modifications.DExD.box.helicases | 14 | 5.10e-06 | 6.76e-05 | 0.720 | 0.30100 | -0.06300 | -0.1410 | 0.63500 | 5.08e-02 | 6.83e-01 | 3.61e-01 | 3.88e-05 |
| transport.metabolite.transporters.at.the.envelope.membrane | 21 | 5.37e-04 | 2.89e-03 | 0.719 | 0.17000 | 0.38000 | 0.4530 | 0.37100 | 1.78e-01 | 2.55e-03 | 3.21e-04 | 3.21e-03 |
| major.CHO.metabolism.synthesis.starch.AGPase | 8 | 4.65e-02 | 1.01e-01 | 0.717 | 0.55900 | 0.40400 | -0.0379 | 0.19100 | 6.16e-03 | 4.80e-02 | 8.53e-01 | 3.49e-01 |
| cell.wall.cellulose.synthesis.COBRA | 7 | 1.66e-02 | 5.00e-02 | 0.706 | 0.40900 | 0.20000 | 0.5380 | -0.04650 | 6.12e-02 | 3.58e-01 | 1.36e-02 | 8.31e-01 |
| secondary.metabolism.flavonoids.flavonols | 7 | 5.85e-02 | 1.20e-01 | 0.706 | 0.23800 | -0.05880 | 0.6040 | 0.27200 | 2.75e-01 | 7.88e-01 | 5.66e-03 | 2.13e-01 |
| cell.wall.hemicellulose.synthesis.glucuronoxylan | 9 | 4.50e-02 | 1.01e-01 | 0.700 | 0.24300 | 0.18200 | 0.5890 | 0.22600 | 2.07e-01 | 3.44e-01 | 2.23e-03 | 2.41e-01 |
| RNA.regulation.of.transcription.CCAAT.box.binding.factor.family..HAP2 | 10 | 4.14e-02 | 9.80e-02 | 0.689 | 0.47000 | 0.27600 | 0.3950 | 0.14900 | 1.01e-02 | 1.31e-01 | 3.07e-02 | 4.16e-01 |
| cell.wall.pectin.esterases.misc | 6 | 2.53e-01 | 3.68e-01 | 0.686 | 0.43100 | 0.16400 | 0.4360 | 0.26000 | 6.74e-02 | 4.85e-01 | 6.46e-02 | 2.70e-01 |
| transport.NDP.sugars.at.the.ER | 7 | 4.05e-02 | 9.70e-02 | 0.686 | 0.52000 | 0.01600 | 0.4260 | 0.13200 | 1.71e-02 | 9.42e-01 | 5.10e-02 | 5.44e-01 |
| cell.cell.death.plants | 5 | 2.57e-01 | 3.69e-01 | 0.682 | -0.17900 | -0.57600 | -0.2250 | -0.22400 | 4.89e-01 | 2.58e-02 | 3.83e-01 | 3.85e-01 |
| Biodegradation.of.Xenobiotics.hydroxyacylglutathione.hydrolase | 5 | 5.30e-02 | 1.11e-01 | 0.675 | 0.02550 | -0.51800 | 0.0349 | -0.43100 | 9.21e-01 | 4.47e-02 | 8.92e-01 | 9.53e-02 |
| protein.postranslational.modification.kinase | 17 | 1.01e-03 | 5.27e-03 | 0.675 | 0.47300 | -0.03650 | 0.2450 | 0.41300 | 7.34e-04 | 7.95e-01 | 8.01e-02 | 3.20e-03 |
| cell.wall.precursor.synthesis.UGE | 5 | 3.80e-01 | 4.83e-01 | 0.648 | -0.13300 | -0.41900 | -0.3220 | -0.34900 | 6.06e-01 | 1.05e-01 | 2.12e-01 | 1.76e-01 |
| cell.wall.cell.wall.proteins.LRR | 17 | 2.54e-02 | 6.86e-02 | 0.644 | 0.22900 | 0.29000 | 0.3840 | 0.36300 | 1.03e-01 | 3.86e-02 | 6.10e-03 | 9.65e-03 |
| protein.synthesis.ribosome.biogenesis.export.from.nucleus | 7 | 1.23e-02 | 4.16e-02 | 0.644 | -0.40200 | -0.32800 | -0.2500 | 0.28900 | 6.55e-02 | 1.33e-01 | 2.52e-01 | 1.86e-01 |
| hormone.metabolism.ethylene.signal.transduction | 13 | 6.98e-06 | 8.17e-05 | 0.641 | 0.01880 | -0.31700 | 0.3360 | -0.44400 | 9.07e-01 | 4.80e-02 | 3.62e-02 | 5.52e-03 |
| protein.synthesis.ribosomal.protein.eukaryotic.60S.subunit.L7A | 5 | 4.42e-02 | 1.01e-01 | 0.641 | -0.50700 | 0.21500 | -0.3270 | -0.00217 | 4.98e-02 | 4.04e-01 | 2.05e-01 | 9.93e-01 |
| cell.wall.cellulose.synthesis.cellulose.synthase | 21 | 6.05e-03 | 2.46e-02 | 0.633 | 0.34300 | 0.37900 | 0.3230 | 0.18600 | 6.47e-03 | 2.63e-03 | 1.03e-02 | 1.40e-01 |
Results (complete table)
Click HERE to show results for all gene sets
| set | setSize | pMANOVA | p.adjustMANOVA | s.dist | s.del3 | s.del5 | s.der3 | s.der5 | p.del3 | p.del5 | p.der3 | p.der5 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| transport.sulphate | 12 | 1.64e-06 | 2.33e-05 | 1.3400 | -0.570000 | -0.60300 | -0.74200 | -0.754000 | 6.29e-04 | 2.99e-04 | 8.50e-06 | 6.09e-06 |
| protein.synthesis.ribosomal.protein.eukaryotic.60S.subunit.L41 | 5 | 1.39e-03 | 6.73e-03 | 1.1800 | -0.908000 | 0.06540 | -0.49200 | -0.558000 | 4.40e-04 | 8.00e-01 | 5.65e-02 | 3.08e-02 |
| cell.wall.cellulose.synthesis | 12 | 7.42e-05 | 5.47e-04 | 1.1400 | 0.433000 | 0.47300 | 0.61800 | 0.712000 | 9.43e-03 | 4.54e-03 | 2.11e-04 | 1.93e-05 |
| secondary.metabolism.phenylpropanoids.lignin.biosynthesis.CCR1 | 5 | 2.48e-02 | 6.86e-02 | 1.0700 | -0.567000 | -0.02620 | -0.55000 | -0.724000 | 2.81e-02 | 9.19e-01 | 3.33e-02 | 5.02e-03 |
| PS.calvin.cycle.rubisco.interacting | 6 | 1.27e-04 | 8.46e-04 | 1.0600 | 0.441000 | 0.81100 | -0.45900 | 0.266000 | 6.13e-02 | 5.80e-04 | 5.15e-02 | 2.60e-01 |
| RNA.regulation.of.transcription.ARF..Auxin.Response.Factor.family | 14 | 2.15e-05 | 1.95e-04 | 1.0300 | 0.537000 | 0.11200 | 0.49200 | 0.718000 | 4.99e-04 | 4.70e-01 | 1.43e-03 | 3.27e-06 |
| PS.lightreaction.photosystem.I.PSI.polypeptide.subunits | 16 | 1.15e-14 | 1.14e-12 | 1.0300 | 0.057400 | 0.64600 | -0.79700 | 0.022400 | 6.91e-01 | 7.71e-06 | 3.34e-08 | 8.77e-01 |
| transport.ammonium | 6 | 2.33e-02 | 6.71e-02 | 1.0000 | 0.213000 | 0.55100 | 0.57000 | 0.572000 | 3.66e-01 | 1.93e-02 | 1.57e-02 | 1.52e-02 |
| PS.lightreaction.photosystem.II.LHC.II | 15 | 7.83e-14 | 5.19e-12 | 0.9900 | 0.042900 | 0.55200 | -0.80400 | 0.163000 | 7.73e-01 | 2.15e-04 | 6.87e-08 | 2.75e-01 |
| cell.wall.precursor.synthesis.GAE | 6 | 4.73e-03 | 2.00e-02 | 0.9750 | 0.449000 | 0.47600 | 0.72000 | 0.065900 | 5.67e-02 | 4.36e-02 | 2.25e-03 | 7.80e-01 |
| Biodegradation.of.Xenobiotics.lactoylglutathione.lyase | 10 | 1.16e-05 | 1.21e-04 | 0.9540 | 0.006060 | 0.38900 | -0.58700 | -0.644000 | 9.74e-01 | 3.33e-02 | 1.32e-03 | 4.21e-04 |
| transport.p..and.v.ATPases.H..transporting.two.sector.ATPase | 8 | 1.18e-07 | 1.81e-06 | 0.9360 | -0.024600 | 0.40700 | 0.55700 | -0.632000 | 9.04e-01 | 4.60e-02 | 6.34e-03 | 1.97e-03 |
| PS.lightreaction.photosystem.II.PSII.polypeptide.subunits | 32 | 5.53e-21 | 1.10e-18 | 0.9310 | -0.002170 | 0.61900 | -0.63000 | -0.294000 | 9.83e-01 | 1.33e-09 | 6.93e-10 | 4.01e-03 |
| PS.lightreaction.NADH.DH | 9 | 2.49e-05 | 2.16e-04 | 0.9280 | -0.162000 | 0.52200 | -0.63300 | -0.402000 | 4.00e-01 | 6.68e-03 | 1.00e-03 | 3.66e-02 |
| protein.synthesis.ribosomal.protein.eukaryotic.40S.subunit.S15A | 5 | 2.48e-02 | 6.86e-02 | 0.9160 | -0.732000 | 0.01900 | -0.19000 | -0.517000 | 4.58e-03 | 9.41e-01 | 4.62e-01 | 4.55e-02 |
| cell.wall.pectin.esterases.acetyl.esterase | 11 | 8.68e-03 | 3.26e-02 | 0.9120 | 0.429000 | 0.48500 | 0.40100 | 0.502000 | 1.37e-02 | 5.36e-03 | 2.12e-02 | 3.97e-03 |
| cell.wall.cell.wall.proteins.AGPs.AGP | 37 | 6.97e-09 | 1.98e-07 | 0.8880 | 0.482000 | 0.37300 | 0.49900 | 0.411000 | 3.85e-07 | 8.63e-05 | 1.52e-07 | 1.52e-05 |
| secondary.metabolism.flavonoids.isoflavones.isoflavone.reductase | 7 | 4.59e-02 | 1.01e-01 | 0.8690 | -0.310000 | -0.62400 | -0.31000 | -0.417000 | 1.55e-01 | 4.24e-03 | 1.56e-01 | 5.62e-02 |
| hormone.metabolism.salicylic.acid.synthesis.degradation | 7 | 6.98e-02 | 1.30e-01 | 0.8400 | -0.354000 | -0.10900 | -0.55500 | -0.511000 | 1.05e-01 | 6.17e-01 | 1.10e-02 | 1.92e-02 |
| protein.synthesis.ribosome.biogenesis.Pre.rRNA.processing.and.modifications.WD.repeat.proteins | 6 | 3.54e-05 | 2.82e-04 | 0.8300 | -0.377000 | 0.24500 | -0.20000 | 0.668000 | 1.10e-01 | 2.99e-01 | 3.96e-01 | 4.57e-03 |
| PS.lightreaction.cyclic.electron.flow.chlororespiration | 9 | 3.37e-03 | 1.49e-02 | 0.8130 | 0.044300 | -0.00555 | -0.63000 | -0.511000 | 8.18e-01 | 9.77e-01 | 1.06e-03 | 7.97e-03 |
| PS.lightreaction.photosystem.I.LHC.I | 6 | 1.76e-03 | 8.32e-03 | 0.8040 | 0.032200 | 0.61400 | -0.49500 | 0.152000 | 8.91e-01 | 9.23e-03 | 3.56e-02 | 5.20e-01 |
| redox.peroxiredoxin | 5 | 1.45e-02 | 4.62e-02 | 0.7980 | -0.398000 | 0.48700 | -0.22600 | -0.435000 | 1.23e-01 | 5.92e-02 | 3.81e-01 | 9.17e-02 |
| secondary.metabolism.phenylpropanoids.lignin.biosynthesis.4CL | 7 | 3.17e-02 | 7.98e-02 | 0.7860 | 0.005850 | 0.38000 | 0.47900 | 0.494000 | 9.79e-01 | 8.16e-02 | 2.82e-02 | 2.37e-02 |
| protein.assembly.and.cofactor.ligation | 21 | 4.56e-08 | 9.78e-07 | 0.7790 | -0.316000 | 0.34900 | -0.41700 | -0.460000 | 1.21e-02 | 5.61e-03 | 9.27e-04 | 2.65e-04 |
| development.late.embryogenesis.abundant | 15 | 1.07e-02 | 3.82e-02 | 0.7640 | -0.330000 | -0.34300 | -0.37700 | -0.464000 | 2.67e-02 | 2.13e-02 | 1.14e-02 | 1.87e-03 |
| transport.Major.Intrinsic.Proteins.TIP | 7 | 8.31e-02 | 1.47e-01 | 0.7510 | -0.523000 | -0.22100 | -0.08900 | -0.483000 | 1.66e-02 | 3.11e-01 | 6.83e-01 | 2.68e-02 |
| hormone.metabolism.jasmonate.synthesis.degradation.12.Oxo.PDA.reductase | 5 | 5.54e-02 | 1.15e-01 | 0.7500 | 0.167000 | -0.13200 | -0.43800 | -0.570000 | 5.18e-01 | 6.08e-01 | 9.01e-02 | 2.72e-02 |
| nucleotide.metabolism.salvage.phosphoribosyltransferases.upp | 5 | 1.64e-01 | 2.58e-01 | 0.7420 | 0.438000 | 0.20500 | 0.04840 | 0.561000 | 9.02e-02 | 4.27e-01 | 8.51e-01 | 3.00e-02 |
| protein.synthesis.ribosome.biogenesis.Pre.rRNA.processing.and.modifications.misc | 9 | 2.79e-03 | 1.26e-02 | 0.7280 | -0.471000 | -0.36700 | -0.39700 | 0.124000 | 1.43e-02 | 5.63e-02 | 3.92e-02 | 5.18e-01 |
| PS.lightreaction.other.electron.carrier..ox.red..ferredoxin | 5 | 6.68e-02 | 1.28e-01 | 0.7280 | -0.093600 | 0.38900 | -0.35300 | -0.495000 | 7.17e-01 | 1.32e-01 | 1.71e-01 | 5.53e-02 |
| protein.synthesis.ribosome.biogenesis.BRIX | 6 | 1.36e-03 | 6.73e-03 | 0.7210 | -0.378000 | -0.19000 | -0.21400 | 0.544000 | 1.09e-01 | 4.21e-01 | 3.64e-01 | 2.10e-02 |
| protein.synthesis.ribosome.biogenesis.Pre.rRNA.processing.and.modifications.DExD.box.helicases | 14 | 5.10e-06 | 6.76e-05 | 0.7200 | 0.301000 | -0.06300 | -0.14100 | 0.635000 | 5.08e-02 | 6.83e-01 | 3.61e-01 | 3.88e-05 |
| transport.metabolite.transporters.at.the.envelope.membrane | 21 | 5.37e-04 | 2.89e-03 | 0.7190 | 0.170000 | 0.38000 | 0.45300 | 0.371000 | 1.78e-01 | 2.55e-03 | 3.21e-04 | 3.21e-03 |
| major.CHO.metabolism.synthesis.starch.AGPase | 8 | 4.65e-02 | 1.01e-01 | 0.7170 | 0.559000 | 0.40400 | -0.03790 | 0.191000 | 6.16e-03 | 4.80e-02 | 8.53e-01 | 3.49e-01 |
| cell.wall.cellulose.synthesis.COBRA | 7 | 1.66e-02 | 5.00e-02 | 0.7060 | 0.409000 | 0.20000 | 0.53800 | -0.046500 | 6.12e-02 | 3.58e-01 | 1.36e-02 | 8.31e-01 |
| secondary.metabolism.flavonoids.flavonols | 7 | 5.85e-02 | 1.20e-01 | 0.7060 | 0.238000 | -0.05880 | 0.60400 | 0.272000 | 2.75e-01 | 7.88e-01 | 5.66e-03 | 2.13e-01 |
| cell.wall.hemicellulose.synthesis.glucuronoxylan | 9 | 4.50e-02 | 1.01e-01 | 0.7000 | 0.243000 | 0.18200 | 0.58900 | 0.226000 | 2.07e-01 | 3.44e-01 | 2.23e-03 | 2.41e-01 |
| RNA.regulation.of.transcription.CCAAT.box.binding.factor.family..HAP2 | 10 | 4.14e-02 | 9.80e-02 | 0.6890 | 0.470000 | 0.27600 | 0.39500 | 0.149000 | 1.01e-02 | 1.31e-01 | 3.07e-02 | 4.16e-01 |
| cell.wall.pectin.esterases.misc | 6 | 2.53e-01 | 3.68e-01 | 0.6860 | 0.431000 | 0.16400 | 0.43600 | 0.260000 | 6.74e-02 | 4.85e-01 | 6.46e-02 | 2.70e-01 |
| transport.NDP.sugars.at.the.ER | 7 | 4.05e-02 | 9.70e-02 | 0.6860 | 0.520000 | 0.01600 | 0.42600 | 0.132000 | 1.71e-02 | 9.42e-01 | 5.10e-02 | 5.44e-01 |
| cell.cell.death.plants | 5 | 2.57e-01 | 3.69e-01 | 0.6820 | -0.179000 | -0.57600 | -0.22500 | -0.224000 | 4.89e-01 | 2.58e-02 | 3.83e-01 | 3.85e-01 |
| Biodegradation.of.Xenobiotics.hydroxyacylglutathione.hydrolase | 5 | 5.30e-02 | 1.11e-01 | 0.6750 | 0.025500 | -0.51800 | 0.03490 | -0.431000 | 9.21e-01 | 4.47e-02 | 8.92e-01 | 9.53e-02 |
| protein.postranslational.modification.kinase | 17 | 1.01e-03 | 5.27e-03 | 0.6750 | 0.473000 | -0.03650 | 0.24500 | 0.413000 | 7.34e-04 | 7.95e-01 | 8.01e-02 | 3.20e-03 |
| cell.wall.precursor.synthesis.UGE | 5 | 3.80e-01 | 4.83e-01 | 0.6480 | -0.133000 | -0.41900 | -0.32200 | -0.349000 | 6.06e-01 | 1.05e-01 | 2.12e-01 | 1.76e-01 |
| cell.wall.cell.wall.proteins.LRR | 17 | 2.54e-02 | 6.86e-02 | 0.6440 | 0.229000 | 0.29000 | 0.38400 | 0.363000 | 1.03e-01 | 3.86e-02 | 6.10e-03 | 9.65e-03 |
| protein.synthesis.ribosome.biogenesis.export.from.nucleus | 7 | 1.23e-02 | 4.16e-02 | 0.6440 | -0.402000 | -0.32800 | -0.25000 | 0.289000 | 6.55e-02 | 1.33e-01 | 2.52e-01 | 1.86e-01 |
| hormone.metabolism.ethylene.signal.transduction | 13 | 6.98e-06 | 8.17e-05 | 0.6410 | 0.018800 | -0.31700 | 0.33600 | -0.444000 | 9.07e-01 | 4.80e-02 | 3.62e-02 | 5.52e-03 |
| protein.synthesis.ribosomal.protein.eukaryotic.60S.subunit.L7A | 5 | 4.42e-02 | 1.01e-01 | 0.6410 | -0.507000 | 0.21500 | -0.32700 | -0.002170 | 4.98e-02 | 4.04e-01 | 2.05e-01 | 9.93e-01 |
| cell.wall.cellulose.synthesis.cellulose.synthase | 21 | 6.05e-03 | 2.46e-02 | 0.6330 | 0.343000 | 0.37900 | 0.32300 | 0.186000 | 6.47e-03 | 2.63e-03 | 1.03e-02 | 1.40e-01 |
| secondary.metabolism.isoprenoids | 5 | 1.97e-01 | 3.03e-01 | 0.6290 | 0.073700 | -0.37200 | -0.45000 | -0.222000 | 7.75e-01 | 1.50e-01 | 8.14e-02 | 3.89e-01 |
| major.CHO.metabolism.degradation.sucrose.fructokinase | 7 | 9.97e-02 | 1.70e-01 | 0.6230 | 0.195000 | 0.58700 | 0.07710 | 0.002450 | 3.73e-01 | 7.19e-03 | 7.24e-01 | 9.91e-01 |
| secondary.metabolism.simple.phenols | 16 | 7.50e-03 | 2.93e-02 | 0.6220 | 0.055300 | 0.11000 | 0.50500 | 0.341000 | 7.02e-01 | 4.47e-01 | 4.72e-04 | 1.81e-02 |
| cell.wall.degradation.cellulases.and.beta..1.4.glucanases | 9 | 8.26e-02 | 1.47e-01 | 0.6180 | 0.264000 | 0.24300 | 0.49100 | 0.109000 | 1.71e-01 | 2.07e-01 | 1.07e-02 | 5.71e-01 |
| signalling.phosphinositides.phosphoinositide.phospholipase.C | 9 | 7.56e-02 | 1.38e-01 | 0.6140 | 0.286000 | 0.24700 | 0.47700 | 0.082700 | 1.38e-01 | 1.99e-01 | 1.33e-02 | 6.67e-01 |
| RNA.processing | 7 | 6.22e-02 | 1.23e-01 | 0.6100 | -0.225000 | -0.39600 | -0.39100 | 0.110000 | 3.02e-01 | 6.96e-02 | 7.34e-02 | 6.13e-01 |
| redox.ascorbate.and.glutathione | 17 | 6.44e-06 | 8.01e-05 | 0.6030 | -0.205000 | 0.01170 | 0.23700 | -0.515000 | 1.43e-01 | 9.34e-01 | 9.10e-02 | 2.38e-04 |
| RNA.regulation.of.transcription.CCAAT.box.binding.factor.family..HAP3 | 7 | 3.65e-01 | 4.81e-01 | 0.6020 | -0.406000 | -0.15000 | -0.29600 | -0.296000 | 6.31e-02 | 4.93e-01 | 1.75e-01 | 1.75e-01 |
| RNA.regulation.of.transcription.CPP.Zn..CPP1.related.transcription.factor.family | 7 | 6.75e-02 | 1.28e-01 | 0.5990 | 0.382000 | -0.05090 | -0.05670 | 0.455000 | 7.99e-02 | 8.16e-01 | 7.95e-01 | 3.73e-02 |
| cell.wall.precursor.synthesis.UXS | 6 | 4.53e-02 | 1.01e-01 | 0.5960 | -0.076000 | -0.15400 | 0.56200 | -0.098700 | 7.47e-01 | 5.13e-01 | 1.71e-02 | 6.75e-01 |
| major.CHO.metabolism.degradation.sucrose.hexokinase | 5 | 3.05e-02 | 7.79e-02 | 0.5910 | -0.416000 | 0.25600 | -0.25500 | 0.215000 | 1.08e-01 | 3.22e-01 | 3.24e-01 | 4.05e-01 |
| protein.synthesis.ribosomal.protein.eukaryotic.60S.subunit.unknown | 5 | 2.13e-01 | 3.21e-01 | 0.5910 | 0.401000 | 0.30300 | -0.27600 | 0.141000 | 1.20e-01 | 2.40e-01 | 2.85e-01 | 5.86e-01 |
| RNA.regulation.of.transcription.ARR | 14 | 1.92e-02 | 5.62e-02 | 0.5900 | 0.335000 | -0.08020 | 0.36500 | 0.309000 | 2.99e-02 | 6.04e-01 | 1.81e-02 | 4.53e-02 |
| cell.wall.hemicellulose.synthesis | 11 | 1.02e-02 | 3.70e-02 | 0.5840 | -0.224000 | -0.07700 | 0.41800 | 0.331000 | 1.98e-01 | 6.58e-01 | 1.63e-02 | 5.72e-02 |
| development.squamosa.promoter.binding.like..SPL. | 13 | 1.46e-02 | 4.62e-02 | 0.5590 | 0.019600 | -0.13100 | 0.27000 | 0.471000 | 9.03e-01 | 4.15e-01 | 9.16e-02 | 3.28e-03 |
| hormone.metabolism.gibberelin.signal.transduction | 7 | 5.06e-02 | 1.08e-01 | 0.5560 | -0.241000 | -0.03480 | 0.49700 | -0.051900 | 2.69e-01 | 8.73e-01 | 2.27e-02 | 8.12e-01 |
| protein.degradation.ubiquitin.E3.SCF.SKP | 9 | 3.20e-01 | 4.30e-01 | 0.5520 | -0.218000 | -0.08780 | -0.34700 | -0.358000 | 2.58e-01 | 6.48e-01 | 7.12e-02 | 6.26e-02 |
| signalling.14.3.3.proteins | 11 | 1.25e-02 | 4.16e-02 | 0.5490 | -0.398000 | -0.00426 | 0.17400 | -0.336000 | 2.23e-02 | 9.80e-01 | 3.17e-01 | 5.39e-02 |
| redox.dismutases.and.catalases | 11 | 1.28e-02 | 4.19e-02 | 0.5430 | 0.254000 | 0.38400 | -0.04000 | -0.286000 | 1.44e-01 | 2.76e-02 | 8.19e-01 | 1.01e-01 |
| protein.aa.activation.pseudouridylate.synthase | 16 | 2.15e-04 | 1.34e-03 | 0.5370 | 0.097200 | 0.30200 | -0.30800 | 0.304000 | 5.01e-01 | 3.63e-02 | 3.27e-02 | 3.51e-02 |
| stress | 7 | 1.21e-01 | 1.98e-01 | 0.5170 | -0.370000 | 0.09790 | -0.34300 | -0.053500 | 9.02e-02 | 6.54e-01 | 1.16e-01 | 8.06e-01 |
| Co.factor.and.vitamine.metabolism.iron.sulphur.clusters | 7 | 6.70e-02 | 1.28e-01 | 0.5150 | -0.063000 | 0.25700 | 0.07830 | -0.436000 | 7.73e-01 | 2.40e-01 | 7.20e-01 | 4.60e-02 |
| protein.degradation.ubiquitin.ubiquitin.protease | 20 | 1.18e-02 | 4.13e-02 | 0.5140 | 0.271000 | -0.04700 | 0.17700 | 0.398000 | 3.62e-02 | 7.16e-01 | 1.72e-01 | 2.08e-03 |
| transport.Major.Intrinsic.Proteins.PIP | 13 | 4.04e-02 | 9.70e-02 | 0.5110 | -0.128000 | 0.12700 | -0.19400 | -0.437000 | 4.26e-01 | 4.30e-01 | 2.27e-01 | 6.38e-03 |
| protein.synthesis.ribosomal.protein.prokaryotic.chloroplast.50S.subunit.L12 | 5 | 1.49e-01 | 2.40e-01 | 0.5050 | -0.062900 | 0.28400 | -0.37400 | 0.175000 | 8.07e-01 | 2.71e-01 | 1.48e-01 | 4.98e-01 |
| protein.aa.activation.asparagine.tRNA.ligase | 5 | 4.47e-01 | 5.53e-01 | 0.5020 | -0.464000 | -0.06140 | -0.13300 | -0.121000 | 7.21e-02 | 8.12e-01 | 6.07e-01 | 6.38e-01 |
| mitochondrial.electron.transport…ATP.synthesis.F1.ATPase | 5 | 4.56e-01 | 5.57e-01 | 0.4990 | -0.180000 | 0.17300 | -0.21600 | -0.374000 | 4.86e-01 | 5.04e-01 | 4.04e-01 | 1.47e-01 |
| protein.degradation.ubiquitin.E3.BTB.POZ.Cullin3.BTB.POZ | 10 | 1.06e-01 | 1.79e-01 | 0.4980 | -0.282000 | -0.36100 | 0.18800 | -0.055000 | 1.23e-01 | 4.82e-02 | 3.02e-01 | 7.63e-01 |
| transport.unspecified.anions | 13 | 2.22e-01 | 3.32e-01 | 0.4980 | 0.158000 | 0.28000 | 0.20700 | 0.318000 | 3.23e-01 | 8.03e-02 | 1.95e-01 | 4.68e-02 |
| secondary.metabolism.flavonoids.flavonols.flavonol.synthase..FLS. | 5 | 2.06e-01 | 3.13e-01 | 0.4980 | -0.454000 | 0.16700 | -0.11100 | -0.036800 | 7.87e-02 | 5.19e-01 | 6.67e-01 | 8.87e-01 |
| major.CHO.metabolism.degradation.starch.starch.cleavage.beta.amylase | 8 | 1.54e-01 | 2.43e-01 | 0.4960 | -0.455000 | 0.02920 | -0.02660 | -0.193000 | 2.57e-02 | 8.86e-01 | 8.96e-01 | 3.44e-01 |
| major.CHO.metabolism.degradation.sucrose.invertases.neutral | 8 | 3.17e-01 | 4.30e-01 | 0.4940 | -0.021300 | -0.09280 | -0.41800 | -0.245000 | 9.17e-01 | 6.49e-01 | 4.05e-02 | 2.30e-01 |
| redox.heme | 5 | 5.98e-01 | 6.96e-01 | 0.4940 | 0.417000 | 0.17800 | 0.15700 | 0.116000 | 1.07e-01 | 4.90e-01 | 5.42e-01 | 6.53e-01 |
| cell.division.plastid | 8 | 2.89e-01 | 4.05e-01 | 0.4910 | 0.275000 | 0.40100 | -0.05140 | 0.053700 | 1.79e-01 | 4.97e-02 | 8.01e-01 | 7.93e-01 |
| redox.ascorbate.and.glutathione.glutathione | 12 | 1.63e-02 | 4.99e-02 | 0.4900 | 0.155000 | 0.30700 | 0.29800 | -0.183000 | 3.54e-01 | 6.57e-02 | 7.34e-02 | 2.73e-01 |
| major.CHO.metabolism.synthesis.starch.starch.synthase | 6 | 3.44e-01 | 4.56e-01 | 0.4840 | 0.233000 | 0.36900 | -0.19600 | 0.074500 | 3.23e-01 | 1.17e-01 | 4.07e-01 | 7.52e-01 |
| transport.nucleotides | 17 | 8.73e-05 | 6.20e-04 | 0.4790 | 0.258000 | -0.13100 | 0.31100 | -0.222000 | 6.59e-02 | 3.50e-01 | 2.65e-02 | 1.14e-01 |
| Co.factor.and.vitamine.metabolism.molybdenum.cofactor | 5 | 2.57e-01 | 3.69e-01 | 0.4640 | 0.026200 | 0.24200 | 0.08770 | -0.385000 | 9.19e-01 | 3.48e-01 | 7.34e-01 | 1.36e-01 |
| misc.alcohol.dehydrogenases.cinnamyl.alcohol.dehydrogenase | 5 | 4.49e-01 | 5.53e-01 | 0.4560 | 0.384000 | 0.19300 | -0.14800 | -0.043200 | 1.37e-01 | 4.54e-01 | 5.67e-01 | 8.67e-01 |
| RNA.regulation.of.transcription.G2.like.transcription.factor.family..GARP | 11 | 1.21e-01 | 1.98e-01 | 0.4540 | -0.275000 | -0.32100 | 0.14600 | 0.075600 | 1.15e-01 | 6.50e-02 | 4.02e-01 | 6.64e-01 |
| RNA.regulation.of.transcription.ABI3.VP1.related.B3.domain.containing.transcription.factor.family | 8 | 1.98e-01 | 3.03e-01 | 0.4470 | 0.363000 | -0.13900 | 0.04770 | 0.215000 | 7.55e-02 | 4.96e-01 | 8.15e-01 | 2.93e-01 |
| nucleotide.metabolism.degradation | 12 | 4.11e-01 | 5.15e-01 | 0.4460 | 0.303000 | 0.12100 | 0.19200 | 0.235000 | 6.91e-02 | 4.67e-01 | 2.49e-01 | 1.58e-01 |
| Biodegradation.of.Xenobiotics | 7 | 4.93e-01 | 5.98e-01 | 0.4450 | -0.220000 | -0.00856 | -0.11100 | -0.370000 | 3.13e-01 | 9.69e-01 | 6.12e-01 | 8.99e-02 |
| signalling.lipids | 5 | 5.48e-01 | 6.49e-01 | 0.4430 | -0.177000 | -0.38900 | 0.11400 | 0.015200 | 4.94e-01 | 1.32e-01 | 6.58e-01 | 9.53e-01 |
| protein.folding | 63 | 6.98e-11 | 2.32e-09 | 0.4420 | -0.042800 | 0.40400 | -0.17400 | 0.021100 | 5.57e-01 | 2.95e-08 | 1.68e-02 | 7.72e-01 |
| metal.handling.binding..chelation.and.storage | 41 | 1.25e-02 | 4.16e-02 | 0.4410 | -0.284000 | -0.14100 | -0.16100 | -0.261000 | 1.67e-03 | 1.17e-01 | 7.49e-02 | 3.87e-03 |
| protein.synthesis.ribosome.biogenesis.Pre.rRNA.processing.and.modifications.snoRNPs | 14 | 2.75e-03 | 1.26e-02 | 0.4400 | -0.292000 | 0.04360 | -0.24600 | 0.213000 | 5.82e-02 | 7.78e-01 | 1.11e-01 | 1.68e-01 |
| RNA.regulation.of.transcription.E2F.DP.transcription.factor.family | 8 | 1.20e-01 | 1.98e-01 | 0.4350 | 0.122000 | -0.09660 | -0.13500 | 0.383000 | 5.52e-01 | 6.36e-01 | 5.09e-01 | 6.05e-02 |
| RNA.processing.splicing | 53 | 2.51e-08 | 6.24e-07 | 0.4340 | -0.062200 | -0.34700 | -0.19100 | 0.167000 | 4.34e-01 | 1.25e-05 | 1.64e-02 | 3.59e-02 |
| protein.degradation.ubiquitin.proteasom | 59 | 5.63e-05 | 4.31e-04 | 0.4240 | -0.147000 | 0.06560 | -0.24500 | -0.307000 | 5.14e-02 | 3.84e-01 | 1.16e-03 | 4.51e-05 |
| hormone.metabolism.jasmonate.induced.regulated.responsive.activated | 12 | 2.89e-02 | 7.47e-02 | 0.4230 | -0.098900 | 0.07470 | 0.15400 | -0.373000 | 5.53e-01 | 6.54e-01 | 3.55e-01 | 2.51e-02 |
| nucleotide.metabolism.salvage.phosphoribosyltransferases.aprt | 5 | 6.36e-01 | 7.19e-01 | 0.4230 | 0.246000 | 0.13300 | 0.31600 | 0.026200 | 3.42e-01 | 6.05e-01 | 2.21e-01 | 9.19e-01 |
| protein.synthesis.ribosomal.protein.eukaryotic.40S.subunit.S17 | 6 | 4.50e-01 | 5.53e-01 | 0.4220 | -0.234000 | -0.11100 | -0.33300 | 0.020400 | 3.21e-01 | 6.39e-01 | 1.58e-01 | 9.31e-01 |
| secondary.metabolism.isoprenoids.non.mevalonate.pathway | 6 | 3.70e-01 | 4.81e-01 | 0.4140 | 0.202000 | 0.03240 | -0.20200 | -0.298000 | 3.93e-01 | 8.91e-01 | 3.92e-01 | 2.06e-01 |
| PS.photorespiration.glycolate.oxydase | 5 | 6.33e-01 | 7.19e-01 | 0.4110 | -0.143000 | 0.11400 | -0.33600 | -0.152000 | 5.79e-01 | 6.59e-01 | 1.93e-01 | 5.57e-01 |
| RNA.regulation.of.transcription.Alfin.like | 7 | 6.70e-01 | 7.37e-01 | 0.4070 | -0.096900 | -0.28400 | -0.16500 | -0.220000 | 6.57e-01 | 1.93e-01 | 4.51e-01 | 3.14e-01 |
| transport.porins | 5 | 3.69e-01 | 4.81e-01 | 0.3980 | -0.099500 | -0.08060 | -0.05970 | 0.372000 | 7.00e-01 | 7.55e-01 | 8.17e-01 | 1.49e-01 |
| redox.misc | 6 | 3.30e-01 | 4.41e-01 | 0.3950 | -0.050600 | 0.17800 | 0.31400 | -0.154000 | 8.30e-01 | 4.50e-01 | 1.84e-01 | 5.13e-01 |
| transport.cyclic.nucleotide.or.calcium.regulated.channels | 18 | 6.07e-02 | 1.22e-01 | 0.3950 | 0.225000 | -0.02800 | 0.31500 | 0.073400 | 9.77e-02 | 8.37e-01 | 2.07e-02 | 5.90e-01 |
| protein.synthesis.ribosomal.protein.unknown.unknown | 5 | 5.47e-01 | 6.49e-01 | 0.3920 | -0.063000 | 0.26900 | -0.26600 | -0.083800 | 8.07e-01 | 2.97e-01 | 3.04e-01 | 7.45e-01 |
| hormone.metabolism.abscisic.acid.synthesis.degradation | 10 | 3.81e-01 | 4.83e-01 | 0.3890 | 0.046300 | -0.04120 | -0.28800 | -0.253000 | 8.00e-01 | 8.22e-01 | 1.14e-01 | 1.65e-01 |
| misc.alcohol.dehydrogenases | 7 | 5.58e-01 | 6.57e-01 | 0.3860 | -0.216000 | 0.05500 | -0.07300 | -0.306000 | 3.22e-01 | 8.01e-01 | 7.38e-01 | 1.61e-01 |
| hormone.metabolism.gibberelin.induced.regulated.responsive.activated | 10 | 3.18e-01 | 4.30e-01 | 0.3850 | 0.215000 | -0.08880 | 0.28300 | 0.116000 | 2.38e-01 | 6.27e-01 | 1.21e-01 | 5.26e-01 |
| protein.synthesis.ribosome.biogenesis.Pre.rRNA.processing.and.modifications.methylotransferases | 16 | 2.55e-02 | 6.86e-02 | 0.3830 | 0.004430 | 0.27800 | -0.15300 | 0.214000 | 9.76e-01 | 5.45e-02 | 2.88e-01 | 1.39e-01 |
| cell.wall.degradation.mannan.xylose.arabinose.fucose | 16 | 3.64e-02 | 9.05e-02 | 0.3790 | 0.166000 | 0.24400 | 0.07880 | -0.225000 | 2.50e-01 | 9.13e-02 | 5.85e-01 | 1.20e-01 |
| hormone.metabolism.ethylene.induced.regulated.responsive.activated | 20 | 2.75e-01 | 3.89e-01 | 0.3780 | -0.158000 | -0.16100 | -0.12200 | -0.277000 | 2.22e-01 | 2.12e-01 | 3.46e-01 | 3.19e-02 |
| signalling.misc | 16 | 2.58e-02 | 6.86e-02 | 0.3740 | -0.167000 | 0.20200 | 0.15400 | -0.218000 | 2.49e-01 | 1.63e-01 | 2.87e-01 | 1.31e-01 |
| protein.synthesis.ribosomal.protein.eukaryotic.60S.subunit.L34 | 10 | 6.14e-01 | 7.03e-01 | 0.3660 | -0.150000 | -0.04370 | -0.28500 | -0.168000 | 4.12e-01 | 8.11e-01 | 1.19e-01 | 3.57e-01 |
| development.storage.proteins | 15 | 3.75e-01 | 4.83e-01 | 0.3650 | -0.154000 | -0.08780 | -0.10300 | -0.302000 | 3.01e-01 | 5.56e-01 | 4.91e-01 | 4.29e-02 |
| protein.synthesis.initiation | 78 | 1.67e-05 | 1.59e-04 | 0.3630 | -0.230000 | -0.20600 | -0.19200 | 0.005910 | 4.54e-04 | 1.66e-03 | 3.45e-03 | 9.28e-01 |
| secondary.metabolism.isoprenoids.non.mevalonate.pathway.geranylgeranyl.pyrophosphate.synthase | 5 | 5.35e-01 | 6.42e-01 | 0.3590 | -0.069200 | 0.23900 | 0.11600 | -0.232000 | 7.89e-01 | 3.55e-01 | 6.55e-01 | 3.68e-01 |
| cell.wall.degradation.pectate.lyases.and.polygalacturonases | 53 | 1.58e-02 | 4.90e-02 | 0.3590 | 0.084100 | 0.16300 | 0.21600 | 0.221000 | 2.90e-01 | 4.06e-02 | 6.54e-03 | 5.38e-03 |
| signalling.phosphorelay | 5 | 6.52e-01 | 7.25e-01 | 0.3550 | -0.196000 | -0.07830 | 0.27600 | 0.073100 | 4.48e-01 | 7.62e-01 | 2.85e-01 | 7.77e-01 |
| redox.ascorbate.and.glutathione.ascorbate | 16 | 9.46e-02 | 1.64e-01 | 0.3490 | -0.064700 | 0.28600 | -0.07580 | -0.175000 | 6.54e-01 | 4.79e-02 | 6.00e-01 | 2.27e-01 |
| cell.organisation | 334 | 2.48e-12 | 9.86e-11 | 0.3460 | 0.194000 | 0.11600 | 0.14600 | 0.218000 | 1.04e-09 | 2.84e-04 | 4.30e-06 | 8.01e-12 |
| protein.degradation.ubiquitin.E3.RING | 19 | 2.39e-02 | 6.78e-02 | 0.3450 | 0.102000 | -0.06500 | -0.03030 | -0.322000 | 4.41e-01 | 6.24e-01 | 8.19e-01 | 1.51e-02 |
| secondary.metabolism.phenylpropanoids | 34 | 4.49e-04 | 2.48e-03 | 0.3450 | -0.170000 | 0.19500 | 0.17200 | -0.150000 | 8.66e-02 | 4.86e-02 | 8.24e-02 | 1.30e-01 |
| transport.p..and.v.ATPases | 28 | 6.00e-02 | 1.22e-01 | 0.3450 | 0.292000 | 0.09610 | 0.14900 | 0.044700 | 7.46e-03 | 3.79e-01 | 1.73e-01 | 6.82e-01 |
| RNA.regulation.of.transcription.CCAAT.box.binding.factor.family..HAP5 | 9 | 6.92e-01 | 7.52e-01 | 0.3440 | -0.107000 | 0.01450 | -0.23100 | -0.231000 | 5.77e-01 | 9.40e-01 | 2.30e-01 | 2.31e-01 |
| RNA.processing.RNA.helicase | 33 | 2.30e-04 | 1.38e-03 | 0.3430 | 0.003960 | -0.03890 | -0.14400 | 0.309000 | 9.69e-01 | 6.99e-01 | 1.53e-01 | 2.12e-03 |
| C1.metabolism | 10 | 2.98e-01 | 4.12e-01 | 0.3410 | -0.038100 | 0.33200 | -0.04040 | 0.055700 | 8.35e-01 | 6.88e-02 | 8.25e-01 | 7.60e-01 |
| cell.wall.pectin.esterases.PME | 26 | 6.29e-02 | 1.23e-01 | 0.3410 | -0.057400 | 0.01820 | 0.28600 | 0.176000 | 6.13e-01 | 8.72e-01 | 1.17e-02 | 1.20e-01 |
| nucleotide.metabolism.salvage.NUDIX.hydrolases | 14 | 1.38e-01 | 2.24e-01 | 0.3360 | 0.005740 | -0.29300 | 0.14500 | -0.078600 | 9.70e-01 | 5.80e-02 | 3.48e-01 | 6.10e-01 |
| RNA.regulation.of.transcription.AP2.EREBP..APETALA2.Ethylene.responsive.element.binding.protein.family | 80 | 9.14e-03 | 3.37e-02 | 0.3360 | -0.181000 | -0.17600 | -0.12100 | -0.185000 | 5.25e-03 | 6.38e-03 | 6.23e-02 | 4.14e-03 |
| cell.vesicle.transport | 150 | 3.75e-13 | 1.87e-11 | 0.3320 | 0.264000 | -0.10400 | 0.15100 | 0.080700 | 2.28e-08 | 2.79e-02 | 1.38e-03 | 8.81e-02 |
| misc.misc2 | 26 | 4.46e-02 | 1.01e-01 | 0.3270 | 0.109000 | 0.21800 | -0.19800 | -0.090500 | 3.36e-01 | 5.39e-02 | 8.10e-02 | 4.24e-01 |
| redox.glutaredoxins | 28 | 4.82e-03 | 2.00e-02 | 0.3240 | -0.150000 | 0.09590 | 0.21300 | -0.168000 | 1.71e-01 | 3.80e-01 | 5.16e-02 | 1.23e-01 |
| Co.factor.and.vitamine.metabolism | 11 | 6.78e-01 | 7.41e-01 | 0.3240 | -0.200000 | -0.07480 | -0.06980 | -0.234000 | 2.51e-01 | 6.68e-01 | 6.88e-01 | 1.80e-01 |
| cell.cycle | 83 | 7.37e-08 | 1.25e-06 | 0.3230 | 0.066600 | -0.03520 | -0.05180 | 0.310000 | 2.95e-01 | 5.80e-01 | 4.15e-01 | 1.06e-06 |
| misc.peroxidases | 55 | 9.97e-05 | 6.84e-04 | 0.3200 | -0.158000 | -0.00440 | 0.27800 | 0.016100 | 4.33e-02 | 9.55e-01 | 3.64e-04 | 8.37e-01 |
| signalling.MAP.kinases | 44 | 4.41e-04 | 2.48e-03 | 0.3180 | 0.171000 | -0.18300 | 0.19100 | 0.035900 | 4.91e-02 | 3.55e-02 | 2.81e-02 | 6.80e-01 |
| secondary.metabolism.isoprenoids.terpenoids | 19 | 2.63e-02 | 6.87e-02 | 0.3140 | -0.187000 | 0.03240 | -0.20600 | 0.143000 | 1.58e-01 | 8.07e-01 | 1.21e-01 | 2.82e-01 |
| transport.calcium | 21 | 2.42e-01 | 3.57e-01 | 0.3120 | -0.153000 | -0.24900 | 0.05520 | -0.095200 | 2.24e-01 | 4.82e-02 | 6.61e-01 | 4.50e-01 |
| transport.amino.acids | 50 | 3.81e-04 | 2.23e-03 | 0.3110 | 0.104000 | 0.18500 | 0.19300 | -0.118000 | 2.02e-01 | 2.33e-02 | 1.80e-02 | 1.49e-01 |
| transport.phosphate | 23 | 4.47e-02 | 1.01e-01 | 0.3090 | 0.113000 | -0.14700 | 0.24700 | 0.011900 | 3.48e-01 | 2.22e-01 | 4.00e-02 | 9.21e-01 |
| minor.CHO.metabolism.trehalose.TPP | 9 | 5.80e-01 | 6.79e-01 | 0.3090 | -0.012300 | -0.27700 | -0.13800 | -0.007370 | 9.49e-01 | 1.51e-01 | 4.74e-01 | 9.69e-01 |
| RNA.regulation.of.transcription.C2C2.Zn..CO.like..Constans.like.zinc.finger.family | 21 | 9.99e-02 | 1.70e-01 | 0.3080 | -0.176000 | 0.08460 | -0.23500 | -0.039300 | 1.63e-01 | 5.02e-01 | 6.19e-02 | 7.55e-01 |
| protein.degradation.ubiquitin.E3.SCF.FBOX | 238 | 7.55e-08 | 1.25e-06 | 0.3070 | -0.169000 | -0.18300 | -0.05670 | -0.170000 | 7.10e-06 | 1.18e-06 | 1.32e-01 | 6.25e-06 |
| hormone.metabolism.jasmonate.synthesis.degradation.lipoxygenase | 6 | 6.95e-01 | 7.52e-01 | 0.3060 | 0.183000 | 0.17300 | -0.07340 | -0.158000 | 4.38e-01 | 4.63e-01 | 7.56e-01 | 5.02e-01 |
| protein.glycosylation | 28 | 3.75e-02 | 9.21e-02 | 0.3000 | 0.186000 | -0.17100 | 0.07850 | 0.143000 | 8.86e-02 | 1.18e-01 | 4.72e-01 | 1.91e-01 |
| hormone.metabolism.gibberelin.synthesis.degradation | 7 | 7.32e-01 | 7.83e-01 | 0.2990 | 0.119000 | 0.01670 | 0.01020 | 0.274000 | 5.85e-01 | 9.39e-01 | 9.63e-01 | 2.10e-01 |
| misc.acid.and.other.phosphatases | 23 | 1.88e-02 | 5.58e-02 | 0.2940 | 0.115000 | 0.04880 | 0.17900 | -0.197000 | 3.40e-01 | 6.85e-01 | 1.38e-01 | 1.02e-01 |
| cell.wall.cell.wall.proteins.HRGP | 13 | 5.11e-01 | 6.17e-01 | 0.2940 | -0.151000 | -0.22700 | 0.08810 | -0.066900 | 3.46e-01 | 1.57e-01 | 5.82e-01 | 6.76e-01 |
| DNA.synthesis.chromatin.structure | 10 | 3.83e-01 | 4.83e-01 | 0.2870 | 0.058800 | -0.11600 | -0.22300 | 0.126000 | 7.47e-01 | 5.24e-01 | 2.23e-01 | 4.91e-01 |
| protein.synthesis.ribosome.biogenesis | 11 | 2.46e-01 | 3.59e-01 | 0.2830 | -0.140000 | 0.02990 | -0.18600 | 0.159000 | 4.21e-01 | 8.64e-01 | 2.86e-01 | 3.62e-01 |
| signalling.light.COP9.signalosome | 12 | 3.84e-01 | 4.83e-01 | 0.2820 | 0.154000 | -0.10800 | -0.19300 | -0.082700 | 3.56e-01 | 5.18e-01 | 2.47e-01 | 6.20e-01 |
| minor.CHO.metabolism.trehalose.potential.TPS.TPP | 7 | 7.80e-01 | 8.26e-01 | 0.2810 | -0.035400 | -0.21000 | -0.01700 | -0.182000 | 8.71e-01 | 3.35e-01 | 9.38e-01 | 4.04e-01 |
| RNA.regulation.of.transcription.C2H2.zinc.finger.family | 92 | 3.06e-05 | 2.53e-04 | 0.2800 | -0.104000 | -0.19900 | 0.09520 | 0.137000 | 8.46e-02 | 9.88e-04 | 1.15e-01 | 2.29e-02 |
| RNA.transcription | 79 | 1.68e-05 | 1.59e-04 | 0.2770 | 0.049400 | -0.19000 | -0.18100 | 0.076100 | 4.48e-01 | 3.50e-03 | 5.54e-03 | 2.42e-01 |
| C1.metabolism.glycine.hydroxymethyltransferase | 7 | 6.48e-01 | 7.25e-01 | 0.2760 | -0.231000 | 0.01880 | 0.14500 | 0.040500 | 2.90e-01 | 9.32e-01 | 5.07e-01 | 8.53e-01 |
| RNA.regulation.of.transcription.putative.transcription.regulator | 22 | 9.26e-02 | 1.62e-01 | 0.2760 | 0.095300 | -0.04970 | -0.09420 | 0.236000 | 4.39e-01 | 6.87e-01 | 4.44e-01 | 5.55e-02 |
| secondary.metabolism.phenylpropanoids.lignin.biosynthesis.CCoAOMT | 6 | 7.20e-01 | 7.74e-01 | 0.2750 | -0.246000 | 0.06730 | 0.07970 | -0.068500 | 2.98e-01 | 7.75e-01 | 7.35e-01 | 7.71e-01 |
| transport.peptides.and.oligopeptides | 48 | 8.34e-02 | 1.47e-01 | 0.2670 | 0.109000 | 0.11100 | 0.21200 | 0.046500 | 1.92e-01 | 1.82e-01 | 1.09e-02 | 5.77e-01 |
| RNA.regulation.of.transcription.C2C2.Zn..GATA.transcription.factor.family | 24 | 3.00e-01 | 4.12e-01 | 0.2640 | 0.015600 | 0.02710 | 0.10500 | 0.240000 | 8.95e-01 | 8.18e-01 | 3.73e-01 | 4.16e-02 |
| transport.Major.Intrinsic.Proteins.NIP | 5 | 8.78e-01 | 9.01e-01 | 0.2620 | -0.154000 | 0.00411 | 0.03300 | -0.209000 | 5.50e-01 | 9.87e-01 | 8.98e-01 | 4.18e-01 |
| RNA.regulation.of.transcription.C2C2.Zn..DOF.zinc.finger.family | 29 | 1.52e-01 | 2.41e-01 | 0.2570 | 0.027600 | 0.16100 | -0.17500 | -0.093000 | 7.97e-01 | 1.32e-01 | 1.04e-01 | 3.86e-01 |
| signalling.light | 84 | 3.74e-03 | 1.62e-02 | 0.2540 | 0.113000 | 0.04050 | 0.01600 | 0.224000 | 7.46e-02 | 5.21e-01 | 8.00e-01 | 3.86e-04 |
| RNA.processing.ribonucleases | 34 | 6.95e-02 | 1.30e-01 | 0.2500 | 0.028000 | -0.17500 | 0.03060 | 0.174000 | 7.77e-01 | 7.82e-02 | 7.57e-01 | 7.93e-02 |
| cell.division | 91 | 1.00e-05 | 1.11e-04 | 0.2490 | 0.047000 | 0.05590 | -0.11400 | 0.209000 | 4.39e-01 | 3.57e-01 | 6.01e-02 | 5.74e-04 |
| RNA.regulation.of.transcription.C3H.zinc.finger.family | 24 | 6.15e-01 | 7.03e-01 | 0.2460 | -0.148000 | -0.15700 | -0.10500 | -0.056400 | 2.09e-01 | 1.84e-01 | 3.75e-01 | 6.33e-01 |
| signalling.unspecified | 7 | 8.62e-01 | 8.94e-01 | 0.2430 | -0.072500 | -0.14000 | -0.18500 | 0.009710 | 7.40e-01 | 5.22e-01 | 3.96e-01 | 9.65e-01 |
| stress.biotic | 48 | 8.32e-02 | 1.47e-01 | 0.2390 | 0.008440 | -0.01260 | -0.11300 | -0.210000 | 9.19e-01 | 8.80e-01 | 1.74e-01 | 1.20e-02 |
| amino.acid.metabolism.synthesis.serine.glycine.cysteine.group.cysteine.OASTL | 8 | 7.72e-01 | 8.21e-01 | 0.2380 | 0.089800 | 0.17700 | -0.00437 | -0.131000 | 6.60e-01 | 3.87e-01 | 9.83e-01 | 5.21e-01 |
| misc.cytochrome.P450 | 26 | 6.05e-01 | 7.00e-01 | 0.2330 | -0.081200 | -0.02550 | -0.12100 | -0.180000 | 4.74e-01 | 8.22e-01 | 2.86e-01 | 1.12e-01 |
| protein.postranslational.modification | 209 | 4.91e-08 | 9.78e-07 | 0.2250 | 0.081200 | -0.11800 | 0.16200 | 0.062800 | 4.32e-02 | 3.16e-03 | 5.52e-05 | 1.18e-01 |
| transport.metal | 63 | 6.80e-03 | 2.70e-02 | 0.2150 | -0.065700 | 0.04070 | 0.07730 | -0.185000 | 3.67e-01 | 5.76e-01 | 2.89e-01 | 1.13e-02 |
| metal.handling.acquisition | 7 | 8.15e-01 | 8.54e-01 | 0.2050 | 0.135000 | -0.13800 | 0.06910 | -0.000911 | 5.36e-01 | 5.26e-01 | 7.52e-01 | 9.97e-01 |
| misc.UDP.glucosyl.and.glucoronyl.transferases | 46 | 2.72e-01 | 3.86e-01 | 0.2020 | 0.099700 | 0.17100 | 0.03520 | -0.016900 | 2.42e-01 | 4.47e-02 | 6.80e-01 | 8.43e-01 |
| signalling.in.sugar.and.nutrient.physiology | 26 | 6.67e-01 | 7.37e-01 | 0.1940 | 0.029100 | -0.00693 | 0.11000 | 0.157000 | 7.97e-01 | 9.51e-01 | 3.30e-01 | 1.66e-01 |
| transport.metabolite.transporters.at.the.mitochondrial.membrane | 61 | 1.96e-01 | 3.03e-01 | 0.1800 | -0.073900 | 0.06130 | -0.13200 | -0.076000 | 3.18e-01 | 4.07e-01 | 7.39e-02 | 3.05e-01 |
| cell.wall.modification | 46 | 2.94e-01 | 4.09e-01 | 0.1760 | 0.107000 | 0.03450 | 0.13600 | -0.004270 | 2.11e-01 | 6.86e-01 | 1.11e-01 | 9.60e-01 |
| transport.sugars | 53 | 6.31e-02 | 1.23e-01 | 0.1730 | 0.105000 | 0.03500 | 0.08950 | -0.099300 | 1.88e-01 | 6.60e-01 | 2.60e-01 | 2.11e-01 |
| transport.potassium | 36 | 6.48e-01 | 7.25e-01 | 0.1690 | 0.084900 | 0.02170 | 0.13600 | 0.049200 | 3.78e-01 | 8.22e-01 | 1.57e-01 | 6.09e-01 |
| metal.handling | 10 | 9.25e-01 | 9.40e-01 | 0.1650 | -0.081500 | -0.12300 | 0.07410 | 0.000592 | 6.55e-01 | 5.00e-01 | 6.85e-01 | 9.97e-01 |
| RNA.regulation.of.transcription | 13 | 8.33e-01 | 8.68e-01 | 0.1600 | 0.004970 | -0.12700 | -0.01490 | 0.097300 | 9.75e-01 | 4.29e-01 | 9.26e-01 | 5.44e-01 |
| transport.nitrate | 9 | 9.48e-01 | 9.58e-01 | 0.1520 | 0.063100 | 0.07850 | -0.04430 | 0.105000 | 7.43e-01 | 6.83e-01 | 8.18e-01 | 5.87e-01 |
| transport.ABC.transporters.and.multidrug.resistance.systems | 93 | 7.20e-02 | 1.33e-01 | 0.1500 | 0.069400 | 0.06760 | -0.10000 | 0.055100 | 2.47e-01 | 2.60e-01 | 9.57e-02 | 3.58e-01 |
| RNA.RNA.binding | 160 | 1.21e-03 | 6.20e-03 | 0.1450 | 0.000704 | -0.06340 | -0.08810 | 0.096200 | 9.88e-01 | 1.67e-01 | 5.45e-02 | 3.58e-02 |
| RNA.regulation.of.transcription.bHLH.Basic.Helix.Loop.Helix.family | 98 | 5.27e-02 | 1.11e-01 | 0.1380 | 0.027100 | -0.07930 | -0.05920 | 0.091900 | 6.44e-01 | 1.75e-01 | 3.11e-01 | 1.16e-01 |
| Co.factor.and.vitamine.metabolism.pantothenate.pantothenate.kinase..PANK. | 5 | 9.87e-01 | 9.88e-01 | 0.1320 | -0.023700 | -0.11000 | -0.05280 | 0.044000 | 9.27e-01 | 6.70e-01 | 8.38e-01 | 8.65e-01 |
| major.CHO.metabolism.degradation.sucrose.Susy | 6 | 9.88e-01 | 9.88e-01 | 0.1200 | -0.050300 | 0.07780 | -0.05160 | -0.055300 | 8.31e-01 | 7.41e-01 | 8.27e-01 | 8.15e-01 |
| signalling.G.proteins | 213 | 1.14e-01 | 1.90e-01 | 0.1140 | 0.068800 | -0.00758 | 0.08240 | 0.036200 | 8.37e-02 | 8.49e-01 | 3.83e-02 | 3.63e-01 |
| cell.cycle.peptidylprolyl.isomerase | 32 | 8.73e-01 | 9.00e-01 | 0.1120 | -0.055900 | 0.04450 | -0.05810 | -0.063800 | 5.84e-01 | 6.63e-01 | 5.70e-01 | 5.32e-01 |
| transport.unspecified.cations | 37 | 8.98e-01 | 9.16e-01 | 0.1080 | 0.054800 | 0.05810 | 0.07170 | 0.006380 | 5.64e-01 | 5.41e-01 | 4.50e-01 | 9.46e-01 |
| RNA.regulation.of.transcription.unclassified | 227 | 4.65e-02 | 1.01e-01 | 0.1040 | 0.012800 | -0.07740 | 0.02210 | 0.065100 | 7.40e-01 | 4.47e-02 | 5.66e-01 | 9.14e-02 |
| not.assigned.no.ontology | 519 | 1.67e-04 | 1.07e-03 | 0.1030 | 0.024900 | -0.07750 | 0.01160 | 0.062100 | 3.33e-01 | 2.55e-03 | 6.50e-01 | 1.56e-02 |
| not.assigned.unknown | 584 | 8.68e-03 | 3.26e-02 | 0.1020 | -0.063800 | 0.00619 | -0.03730 | -0.069500 | 8.50e-03 | 7.98e-01 | 1.25e-01 | 4.15e-03 |
| transport.misc | 108 | 2.35e-01 | 3.50e-01 | 0.1010 | 0.039100 | 0.03910 | 0.00817 | -0.083600 | 4.83e-01 | 4.83e-01 | 8.83e-01 | 1.33e-01 |
| development.unspecified | 317 | 7.85e-01 | 8.26e-01 | 0.0309 | 0.026000 | -0.00267 | 0.00941 | -0.013700 | 4.27e-01 | 9.35e-01 | 7.74e-01 | 6.75e-01 |
Detailed Gene set reports
transport.sulphate
| metric | value |
|---|---|
| setSize | 12 |
| pMANOVA | 1.64e-06 |
| p.adjustMANOVA | 2.33e-05 |
| s.dist | 1.34 |
| s.del3 | -0.57 |
| s.del5 | -0.603 |
| s.der3 | -0.742 |
| s.der5 | -0.754 |
| p.del3 | 0.000629 |
| p.del5 | 0.000299 |
| p.der3 | 8.5e-06 |
| p.der5 | 6.09e-06 |
Warning in xtfrm.data.frame(x): cannot xtfrm data frames
| Gene | der5 | der3 |
|---|---|---|
| AT5G19600 | -9524 | -10559 |
| AT3G51895 | -9485 | -10531 |
| AT3G12520 | -9477 | -10523 |
| AT1G78000 | -9505 | -10486 |
| AT5G10180 | -9291 | -10494 |
| AT1G77990 | -8709 | -10144 |
| AT5G13550 | -8569 | -9562 |
| AT3G15990 | -8384 | -8364 |
| AT4G08620 | -8927 | -5312 |
| AT1G22150 | -6813 | -5256 |
Click HERE to show all gene set members
| del3 | del5 | der3 | der5 | |
|---|---|---|---|---|
| AT3G12520 | -9294 | -9852 | -10523 | -9477 |
| AT5G19600 | -9268 | -9859 | -10559 | -9524 |
| AT1G77990 | -9153 | -9832 | -10144 | -8709 |
| AT3G51895 | -8648 | -8716 | -10531 | -9485 |
| AT1G23090 | 8189 | 4770 | -7346 | 864 |
| AT4G02700 | -7799 | 2430 | 2139 | 2003 |
| AT5G13550 | -7345 | -8264 | -9562 | -8569 |
| AT1G22150 | -6204 | -7975 | -5256 | -6813 |
| AT3G15990 | -5153 | -8337 | -8364 | -8384 |
| AT5G10180 | -2124 | 1037 | -10494 | -9291 |
| AT4G08620 | -1477 | -7381 | -5312 | -8927 |
| AT1G78000 | -9544 | -9884 | -10486 | -9505 |
protein.synthesis.ribosomal.protein.eukaryotic.60S.subunit.L41
| metric | value |
|---|---|
| setSize | 5 |
| pMANOVA | 0.00139 |
| p.adjustMANOVA | 0.00673 |
| s.dist | 1.18 |
| s.del3 | -0.908 |
| s.del5 | 0.0654 |
| s.der3 | -0.492 |
| s.der5 | -0.558 |
| p.del3 | 0.00044 |
| p.del5 | 0.8 |
| p.der3 | 0.0565 |
| p.der5 | 0.0308 |
Warning in xtfrm.data.frame(x): cannot xtfrm data frames
| Gene | del3 | der5 |
|---|---|---|
| AT3G08520 | -9850 | -6019 |
| AT3G56020 | -9543 | -6040 |
| AT1G56045 | -9457 | -5814 |
| AT3G11120 | -8330 | -5008 |
| AT2G40205 | -7644 | -3266 |
Click HERE to show all gene set members
| del3 | del5 | der3 | der5 | |
|---|---|---|---|---|
| AT3G08520 | -9850 | -2454 | -3938 | -6019 |
| AT3G56020 | -9543 | 1821 | -6647 | -6040 |
| AT1G56045 | -9457 | -1267 | -6346 | -5814 |
| AT3G11120 | -8330 | 2960 | -3888 | -5008 |
| AT2G40205 | -7644 | 1751 | -7135 | -3266 |
cell.wall.cellulose.synthesis
| metric | value |
|---|---|
| setSize | 12 |
| pMANOVA | 7.42e-05 |
| p.adjustMANOVA | 0.000547 |
| s.dist | 1.14 |
| s.del3 | 0.433 |
| s.del5 | 0.473 |
| s.der3 | 0.618 |
| s.der5 | 0.712 |
| p.del3 | 0.00943 |
| p.del5 | 0.00454 |
| p.der3 | 0.000211 |
| p.der5 | 1.93e-05 |
Warning in xtfrm.data.frame(x): cannot xtfrm data frames
| Gene | der5 | der3 |
|---|---|---|
| AT5G16190 | 9876 | 8089 |
| AT4G07960 | 9025 | 8627 |
| AT5G49720 | 8072 | 8382 |
| AT5G22740 | 8230 | 8045 |
| AT5G03760 | 8319 | 7671 |
| AT4G31590 | 7055 | 6363 |
| AT3G07330 | 8293 | 4766 |
| AT3G56000 | 5808 | 5496 |
| AT2G24630 | 4957 | 4117 |
| AT5G22130 | 6013 | 2708 |
| AT3G28180 | 2179 | 5842 |
Click HERE to show all gene set members
| del3 | del5 | der3 | der5 | |
|---|---|---|---|---|
| AT3G28180 | 9645 | 322 | 5842 | 2179 |
| AT5G49720 | 8967 | 8589 | 8382 | 8072 |
| AT5G16190 | 8917 | 9309 | 8089 | 9876 |
| AT2G24630 | 7470 | 6672 | 4117 | 4957 |
| AT5G22130 | 6855 | 8679 | 2708 | 6013 |
| AT4G07960 | 6683 | -212 | 8627 | 9025 |
| AT3G07330 | 5751 | 5946 | 4766 | 8293 |
| AT5G22740 | -5112 | -5589 | 8045 | 8230 |
| AT1G24070 | -4641 | 5287 | -6569 | 8830 |
| AT3G56000 | 3742 | 1744 | 5496 | 5808 |
| AT4G31590 | 3203 | 8334 | 6363 | 7055 |
| AT5G03760 | -1340 | 5619 | 7671 | 8319 |
secondary.metabolism.phenylpropanoids.lignin.biosynthesis.CCR1
| metric | value |
|---|---|
| setSize | 5 |
| pMANOVA | 0.0248 |
| p.adjustMANOVA | 0.0686 |
| s.dist | 1.07 |
| s.del3 | -0.567 |
| s.del5 | -0.0262 |
| s.der3 | -0.55 |
| s.der5 | -0.724 |
| p.del3 | 0.0281 |
| p.del5 | 0.919 |
| p.der3 | 0.0333 |
| p.der5 | 0.00502 |
Warning in xtfrm.data.frame(x): cannot xtfrm data frames
| Gene | der5 | del3 |
|---|---|---|
| AT1G80820 | -9304 | -7749 |
| AT4G30470 | -9332 | -6606 |
| AT5G14700 | -8037 | -7340 |
| AT1G15950 | -3937 | -3361 |
| AT5G58490 | -3716 | -3062 |
Click HERE to show all gene set members
| del3 | del5 | der3 | der5 | |
|---|---|---|---|---|
| AT1G80820 | -7749 | -9061 | -10306 | -9304 |
| AT5G14700 | -7340 | -497 | -9615 | -8037 |
| AT4G30470 | -6606 | -3597 | -10211 | -9332 |
| AT1G15950 | -3361 | 7953 | 5976 | -3937 |
| AT5G58490 | -3062 | 3522 | -6599 | -3716 |
PS.calvin.cycle.rubisco.interacting
| metric | value |
|---|---|
| setSize | 6 |
| pMANOVA | 0.000127 |
| p.adjustMANOVA | 0.000846 |
| s.dist | 1.06 |
| s.del3 | 0.441 |
| s.del5 | 0.811 |
| s.der3 | -0.459 |
| s.der5 | 0.266 |
| p.del3 | 0.0613 |
| p.del5 | 0.00058 |
| p.der3 | 0.0515 |
| p.der5 | 0.26 |
Warning in xtfrm.data.frame(x): cannot xtfrm data frames
| Gene | del5 | der3 |
|---|---|---|
| AT2G39730 | 9495 | -9139 |
| AT1G55490 | 9237 | -6834 |
| AT1G14030 | 5404 | -7300 |
| AT1G73110 | 4486 | -7515 |
| AT4G20130 | 9062 | -2258 |
Click HERE to show all gene set members
| del3 | del5 | der3 | der5 | |
|---|---|---|---|---|
| AT4G20130 | 9114 | 9062 | -2258 | 8866 |
| AT1G55490 | 6378 | 9237 | -6834 | 7232 |
| AT1G73110 | 4785 | 4486 | -7515 | -3843 |
| AT2G28000 | 4724 | 9556 | 1470 | 3652 |
| AT1G14030 | 4111 | 5404 | -7300 | 2081 |
| AT2G39730 | -3540 | 9495 | -9139 | -929 |
RNA.regulation.of.transcription.ARF..Auxin.Response.Factor.family
| metric | value |
|---|---|
| setSize | 14 |
| pMANOVA | 2.15e-05 |
| p.adjustMANOVA | 0.000195 |
| s.dist | 1.03 |
| s.del3 | 0.537 |
| s.del5 | 0.112 |
| s.der3 | 0.492 |
| s.der5 | 0.718 |
| p.del3 | 0.000499 |
| p.del5 | 0.47 |
| p.der3 | 0.00143 |
| p.der5 | 3.27e-06 |
Warning in xtfrm.data.frame(x): cannot xtfrm data frames
| Gene | der5 | del3 |
|---|---|---|
| AT1G30330 | 10013 | 9311 |
| AT4G30080 | 9613 | 8762 |
| AT1G59750 | 8132 | 9254 |
| AT3G61830 | 10042 | 7457 |
| AT1G19220 | 9490 | 7279 |
| AT5G60450 | 9467 | 7247 |
| AT1G77850 | 5058 | 9384 |
| AT2G33860 | 6123 | 7530 |
| AT4G23980 | 9993 | 3548 |
| AT2G46530 | 9539 | 3198 |
| AT2G28350 | 9861 | 3016 |
| AT5G37020 | 9855 | 126 |
Click HERE to show all gene set members
| del3 | del5 | der3 | der5 | |
|---|---|---|---|---|
| AT1G77850 | 9384 | -1680 | 1950 | 5058 |
| AT1G30330 | 9311 | 1987 | 3440 | 10013 |
| AT1G59750 | 9254 | 3222 | 3073 | 8132 |
| AT4G30080 | 8762 | 5064 | 8738 | 9613 |
| AT2G33860 | 7530 | 8536 | 6334 | 6123 |
| AT3G61830 | 7457 | 2897 | 9028 | 10042 |
| AT1G19220 | 7279 | -1962 | 4738 | 9490 |
| AT5G60450 | 7247 | 6442 | 5718 | 9467 |
| AT5G62000 | -3943 | -5902 | 275 | -959 |
| AT4G23980 | 3548 | -5651 | 8402 | 9993 |
| AT2G46530 | 3198 | -4581 | 8431 | 9539 |
| AT2G28350 | 3016 | -1564 | 4407 | 9861 |
| AT1G19850 | 666 | 2519 | -10183 | -4327 |
| AT5G37020 | 126 | 4870 | 2517 | 9855 |
PS.lightreaction.photosystem.I.PSI.polypeptide.subunits
| metric | value |
|---|---|
| setSize | 16 |
| pMANOVA | 1.15e-14 |
| p.adjustMANOVA | 1.14e-12 |
| s.dist | 1.03 |
| s.del3 | 0.0574 |
| s.del5 | 0.646 |
| s.der3 | -0.797 |
| s.der5 | 0.0224 |
| p.del3 | 0.691 |
| p.del5 | 7.71e-06 |
| p.der3 | 3.34e-08 |
| p.der5 | 0.877 |
Warning in xtfrm.data.frame(x): cannot xtfrm data frames
| Gene | der3 | del5 |
|---|---|---|
| AT1G52230 | -9530 | 9286 |
| AT1G30380 | -9434 | 9021 |
| AT5G64040 | -8916 | 9199 |
| AT2G46820 | -8631 | 9338 |
| AT1G31330 | -9081 | 8567 |
| AT4G12800 | -9273 | 8251 |
| AT4G28750 | -9660 | 7911 |
| AT3G16140 | -9084 | 8327 |
| AT1G55670 | -9353 | 7790 |
| AT1G08380 | -9501 | 6466 |
| AT1G03130 | -9384 | 5957 |
| AT4G02770 | -9059 | 5434 |
| AT2G20260 | -9062 | 4236 |
| ATCG00350 | -7284 | 675 |
| ATCG00340 | -2329 | 667 |
Click HERE to show all gene set members
| del3 | del5 | der3 | der5 | |
|---|---|---|---|---|
| ATCG00630 | -9731 | -1132 | -7618 | -5445 |
| AT1G52230 | 4809 | 9286 | -9530 | 1873 |
| AT1G55670 | -3512 | 7790 | -9353 | 382 |
| AT1G03130 | 3563 | 5957 | -9384 | 3171 |
| AT5G64040 | 3313 | 9199 | -8916 | 1161 |
| AT4G12800 | 2976 | 8251 | -9273 | 2264 |
| AT1G31330 | 2963 | 8567 | -9081 | 3621 |
| AT4G02770 | 2813 | 5434 | -9059 | 614 |
| AT2G46820 | 2438 | 9338 | -8631 | 2043 |
| AT3G16140 | 2380 | 8327 | -9084 | 2636 |
| AT1G08380 | -2033 | 6466 | -9501 | 843 |
| AT2G20260 | 1416 | 4236 | -9062 | 2257 |
| ATCG00350 | -1373 | 675 | -7284 | -5531 |
| AT1G30380 | -1346 | 9021 | -9434 | 1424 |
| ATCG00340 | -418 | 667 | -2329 | -5039 |
| AT4G28750 | -293 | 7911 | -9660 | 1075 |
transport.ammonium
| metric | value |
|---|---|
| setSize | 6 |
| pMANOVA | 0.0233 |
| p.adjustMANOVA | 0.0671 |
| s.dist | 1 |
| s.del3 | 0.213 |
| s.del5 | 0.551 |
| s.der3 | 0.57 |
| s.der5 | 0.572 |
| p.del3 | 0.366 |
| p.del5 | 0.0193 |
| p.der3 | 0.0157 |
| p.der5 | 0.0152 |
Warning in xtfrm.data.frame(x): cannot xtfrm data frames
| Gene | der5 | der3 |
|---|---|---|
| AT3G24300 | 10037 | 9004 |
| AT4G13510 | 9931 | 9000 |
| AT1G64780 | 9968 | 8649 |
| AT2G38290 | 6177 | 8223 |
| AT1G17470 | 1016 | 1600 |
Click HERE to show all gene set members
| del3 | del5 | der3 | der5 | |
|---|---|---|---|---|
| AT2G38290 | 8840 | 9238 | 8223 | 6177 |
| AT1G64780 | -6118 | 5169 | 8649 | 9968 |
| AT1G17470 | 4455 | -5841 | 1600 | 1016 |
| AT4G13510 | 3291 | 8630 | 9000 | 9931 |
| AT1G72660 | 3254 | 8319 | -7531 | -2035 |
| AT3G24300 | -1583 | 6454 | 9004 | 10037 |
PS.lightreaction.photosystem.II.LHC.II
| metric | value |
|---|---|
| setSize | 15 |
| pMANOVA | 7.83e-14 |
| p.adjustMANOVA | 5.19e-12 |
| s.dist | 0.99 |
| s.del3 | 0.0429 |
| s.del5 | 0.552 |
| s.der3 | -0.804 |
| s.der5 | 0.163 |
| p.del3 | 0.773 |
| p.del5 | 0.000215 |
| p.der3 | 6.87e-08 |
| p.der5 | 0.275 |
Warning in xtfrm.data.frame(x): cannot xtfrm data frames
| Gene | der3 | del5 |
|---|---|---|
| AT3G27690 | -10076 | 7811 |
| AT5G01530 | -8866 | 7837 |
| AT1G15820 | -9243 | 7277 |
| AT4G10340 | -9266 | 6669 |
| AT3G08940 | -9476 | 6404 |
| AT1G29910 | -9241 | 6085 |
| AT2G05070 | -9520 | 5594 |
| AT1G29920 | -9972 | 5042 |
| AT1G29930 | -9168 | 5385 |
| AT2G05100 | -9071 | 5242 |
| AT5G54270 | -9426 | 4920 |
| AT2G34430 | -9798 | 4560 |
| AT2G40100 | -4620 | 7310 |
| AT2G34420 | -8490 | 2601 |
Click HERE to show all gene set members
| del3 | del5 | der3 | der5 | |
|---|---|---|---|---|
| AT1G76570 | -6784 | -2807 | -3429 | -1262 |
| AT2G05100 | 6579 | 5242 | -9071 | 2704 |
| AT2G05070 | 5559 | 5594 | -9520 | 1909 |
| AT3G27690 | 4288 | 7811 | -10076 | 4120 |
| AT2G40100 | -3972 | 7310 | -4620 | -5443 |
| AT2G34420 | -3478 | 2601 | -8490 | 1260 |
| AT1G29920 | 2412 | 5042 | -9972 | 5845 |
| AT2G34430 | 1861 | 4560 | -9798 | 7682 |
| AT5G01530 | -1260 | 7837 | -8866 | -2297 |
| AT3G08940 | 709 | 6404 | -9476 | 2831 |
| AT1G15820 | -530 | 7277 | -9243 | -1407 |
| AT1G29910 | 472 | 6085 | -9241 | 3200 |
| AT1G29930 | -340 | 5385 | -9168 | 2053 |
| AT4G10340 | -162 | 6669 | -9266 | 3168 |
| AT5G54270 | -8 | 4920 | -9426 | 3186 |
cell.wall.precursor.synthesis.GAE
| metric | value |
|---|---|
| setSize | 6 |
| pMANOVA | 0.00473 |
| p.adjustMANOVA | 0.02 |
| s.dist | 0.975 |
| s.del3 | 0.449 |
| s.del5 | 0.476 |
| s.der3 | 0.72 |
| s.der5 | 0.0659 |
| p.del3 | 0.0567 |
| p.del5 | 0.0436 |
| p.der3 | 0.00225 |
| p.der5 | 0.78 |
Warning in xtfrm.data.frame(x): cannot xtfrm data frames
| Gene | der3 | del5 |
|---|---|---|
| AT3G23820 | 8137 | 9684 |
| AT4G12250 | 7516 | 7649 |
| AT4G00110 | 4776 | 8090 |
| AT1G02000 | 4605 | 2683 |
Click HERE to show all gene set members
| del3 | del5 | der3 | der5 | |
|---|---|---|---|---|
| AT3G23820 | 9394 | 9684 | 8137 | 9749 |
| AT4G12250 | 6130 | 7649 | 7516 | -5202 |
| AT1G02000 | 5382 | 2683 | 4605 | -555 |
| AT4G00110 | 4577 | 8090 | 4776 | 5832 |
| AT4G30440 | 3104 | -415 | 8186 | -6098 |
| AT2G45310 | -2540 | -179 | 4589 | 1588 |
Biodegradation.of.Xenobiotics.lactoylglutathione.lyase
| metric | value |
|---|---|
| setSize | 10 |
| pMANOVA | 1.16e-05 |
| p.adjustMANOVA | 0.000121 |
| s.dist | 0.954 |
| s.del3 | 0.00606 |
| s.del5 | 0.389 |
| s.der3 | -0.587 |
| s.der5 | -0.644 |
| p.del3 | 0.974 |
| p.del5 | 0.0333 |
| p.der3 | 0.00132 |
| p.der5 | 0.000421 |
Warning in xtfrm.data.frame(x): cannot xtfrm data frames
| Gene | der5 | der3 |
|---|---|---|
| AT1G15380 | -9381 | -10511 |
| AT5G57040 | -8964 | -9110 |
| AT1G80160 | -7874 | -9897 |
| AT2G32090 | -8610 | -6624 |
| AT5G41650 | -5655 | -7478 |
| AT1G67280 | -7946 | -4574 |
| AT1G64185 | -4213 | -6618 |
| AT1G08110 | -3892 | -5454 |
Click HERE to show all gene set members
| del3 | del5 | der3 | der5 | |
|---|---|---|---|---|
| AT1G15380 | -7053 | -2817 | -10511 | -9381 |
| AT1G80160 | 6706 | 4154 | -9897 | -7874 |
| AT1G07645 | 6678 | -2578 | -7321 | 4076 |
| AT1G08110 | -5190 | 6080 | -5454 | -3892 |
| AT1G67280 | -5016 | 6616 | -4574 | -7946 |
| AT2G32090 | 4367 | -259 | -6624 | -8610 |
| AT5G57040 | -3875 | 8460 | -9110 | -8964 |
| AT1G64185 | 4063 | 4760 | -6618 | -4213 |
| AT5G41650 | -1272 | 6539 | -7478 | -5655 |
| AT1G11840 | 541 | 6353 | 2458 | -8277 |
transport.p..and.v.ATPases.H..transporting.two.sector.ATPase
| metric | value |
|---|---|
| setSize | 8 |
| pMANOVA | 1.18e-07 |
| p.adjustMANOVA | 1.81e-06 |
| s.dist | 0.936 |
| s.del3 | -0.0246 |
| s.del5 | 0.407 |
| s.der3 | 0.557 |
| s.der5 | -0.632 |
| p.del3 | 0.904 |
| p.del5 | 0.046 |
| p.der3 | 0.00634 |
| p.der5 | 0.00197 |
Warning in xtfrm.data.frame(x): cannot xtfrm data frames
| Gene | der5 | der3 |
|---|---|---|
| AT3G28710 | -6152 | 6876 |
| AT3G28715 | -5969 | 6281 |
| AT1G19910 | -6399 | 5720 |
| AT4G34720 | -5234 | 6348 |
| AT4G02620 | -4886 | 6014 |
| AT2G16510 | -5166 | 4340 |
| AT1G64200 | -6453 | 1650 |
| AT1G75630 | -7372 | 390 |
Click HERE to show all gene set members
| del3 | del5 | der3 | der5 | |
|---|---|---|---|---|
| AT1G75630 | -9434 | 7273 | 390 | -7372 |
| AT1G64200 | -7010 | -25 | 1650 | -6453 |
| AT4G02620 | 6562 | 5893 | 6014 | -4886 |
| AT4G34720 | 4102 | 8911 | 6348 | -5234 |
| AT2G16510 | 3672 | 8526 | 4340 | -5166 |
| AT3G28715 | 3651 | -2562 | 6281 | -5969 |
| AT3G28710 | -2369 | -5098 | 6876 | -6152 |
| AT1G19910 | -1622 | 8407 | 5720 | -6399 |
PS.lightreaction.photosystem.II.PSII.polypeptide.subunits
| metric | value |
|---|---|
| setSize | 32 |
| pMANOVA | 5.53e-21 |
| p.adjustMANOVA | 1.1e-18 |
| s.dist | 0.931 |
| s.del3 | -0.00217 |
| s.del5 | 0.619 |
| s.der3 | -0.63 |
| s.der5 | -0.294 |
| p.del3 | 0.983 |
| p.del5 | 1.33e-09 |
| p.der3 | 6.93e-10 |
| p.der5 | 0.00401 |
Warning in xtfrm.data.frame(x): cannot xtfrm data frames
| Gene | der3 | del5 |
|---|---|---|
| AT4G21280 | -9262 | 9230 |
| AT1G44575 | -8928 | 9157 |
| AT3G21055 | -8864 | 9010 |
| AT1G03600 | -9370 | 8409 |
| AT1G06680 | -8969 | 8550 |
| AT2G06520 | -8776 | 8592 |
| AT1G67740 | -9035 | 8110 |
| AT1G14150 | -8564 | 8353 |
| AT1G79040 | -9037 | 7671 |
| AT3G55330 | -9383 | 7224 |
| AT3G50820 | -9587 | 6983 |
| AT2G30570 | -9563 | 6982 |
| AT5G11450 | -6991 | 9219 |
| AT1G51400 | -8954 | 7117 |
| AT1G77090 | -8427 | 6972 |
| AT5G66570 | -8723 | 6550 |
| AT3G56650 | -6550 | 8560 |
| ATCG00270 | -8873 | 6197 |
| AT4G05180 | -9547 | 4126 |
| ATCG00080 | -7985 | 4925 |
Click HERE to show all gene set members
| del3 | del5 | der3 | der5 | |
|---|---|---|---|---|
| ATCG00220 | -8599 | 4674 | -7617 | -3470 |
| AT5G02120 | -7581 | 3209 | -6454 | -5956 |
| AT3G55330 | 7785 | 7224 | -9383 | -416 |
| AT1G76450 | 7772 | 7915 | -1374 | -3739 |
| AT3G56650 | 7543 | 8560 | -6550 | -2295 |
| AT4G37230 | -7177 | -3101 | -2880 | -7176 |
| ATCG00080 | -6514 | 4925 | -7985 | -4144 |
| AT4G15510 | 6563 | 9118 | 358 | 2441 |
| AT5G11450 | 6194 | 9219 | -6991 | -6769 |
| ATCG00070 | -5241 | -3155 | 2637 | -5354 |
| AT1G14150 | -4322 | 8353 | -8564 | -1071 |
| ATCG00280 | -3706 | 1664 | -8446 | -7347 |
| ATCG00680 | -3552 | 2374 | -7594 | -6417 |
| ATCG00020 | -3529 | -1656 | -9689 | -7562 |
| AT1G05385 | -3528 | 6881 | 389 | -5159 |
| AT1G67740 | 3616 | 8110 | -9035 | 5282 |
| AT4G21280 | 3480 | 9230 | -9262 | 937 |
| AT5G51545 | 3437 | 4400 | -1529 | -1717 |
| AT1G51400 | 3345 | 7117 | -8954 | -1885 |
| AT3G21055 | 2969 | 9010 | -8864 | 3745 |
| AT4G05180 | 2938 | 4126 | -9547 | -695 |
| AT2G30570 | -2234 | 6982 | -9563 | 702 |
| AT1G79040 | -2025 | 7671 | -9037 | -917 |
| AT1G44575 | 1686 | 9157 | -8928 | -5674 |
| ATCG00270 | -1642 | 6197 | -8873 | -8018 |
| AT1G77090 | -1569 | 6972 | -8427 | -2723 |
| AT1G06680 | 1525 | 8550 | -8969 | 1069 |
| AT4G28660 | -1105 | 7230 | -4125 | -5754 |
| AT3G50820 | 626 | 6983 | -9587 | -7301 |
| AT1G03600 | 513 | 8409 | -9370 | 2383 |
| AT2G06520 | -392 | 8592 | -8776 | 160 |
| AT5G66570 | -21 | 6550 | -8723 | 408 |
PS.lightreaction.NADH.DH
| metric | value |
|---|---|
| setSize | 9 |
| pMANOVA | 2.49e-05 |
| p.adjustMANOVA | 0.000216 |
| s.dist | 0.928 |
| s.del3 | -0.162 |
| s.del5 | 0.522 |
| s.der3 | -0.633 |
| s.der5 | -0.402 |
| p.del3 | 0.4 |
| p.del5 | 0.00668 |
| p.der3 | 0.001 |
| p.der5 | 0.0366 |
Warning in xtfrm.data.frame(x): cannot xtfrm data frames
| Gene | der3 | del5 |
|---|---|---|
| ATCG00430 | -9646 | 9153 |
| ATCG00420 | -9180 | 9107 |
| ATCG00440 | -8689 | 9349 |
| AT1G70760 | -9460 | 5822 |
| ATCG01010 | -9061 | 5963 |
| AT2G01590 | -6366 | 8415 |
Click HERE to show all gene set members
| del3 | del5 | der3 | der5 | |
|---|---|---|---|---|
| AT1G70760 | -6836 | 5822 | -9460 | -3228 |
| AT4G37920 | 6224 | -921 | -4286 | 5052 |
| AT1G74880 | -5808 | -1427 | -4735 | 397 |
| AT2G01590 | 5632 | 8415 | -6366 | -4396 |
| ATCG01010 | -5117 | 5963 | -9061 | -8410 |
| ATCG00430 | -4655 | 9153 | -9646 | -5036 |
| ATCG00420 | -4582 | 9107 | -9180 | -5309 |
| ATCG01050 | 1181 | -110 | -1319 | -6161 |
| ATCG00440 | -928 | 9349 | -8689 | -6250 |
protein.synthesis.ribosomal.protein.eukaryotic.40S.subunit.S15A
| metric | value |
|---|---|
| setSize | 5 |
| pMANOVA | 0.0248 |
| p.adjustMANOVA | 0.0686 |
| s.dist | 0.916 |
| s.del3 | -0.732 |
| s.del5 | 0.019 |
| s.der3 | -0.19 |
| s.der5 | -0.517 |
| p.del3 | 0.00458 |
| p.del5 | 0.941 |
| p.der3 | 0.462 |
| p.der5 | 0.0455 |
Warning in xtfrm.data.frame(x): cannot xtfrm data frames
| Gene | del3 | der5 |
|---|---|---|
| AT4G29430 | -9091 | -7260 |
| AT1G07770 | -7174 | -6739 |
| AT5G59850 | -8103 | -4246 |
| AT3G46040 | -7427 | -4098 |
| AT2G19720 | -4423 | -1789 |
Click HERE to show all gene set members
| del3 | del5 | der3 | der5 | |
|---|---|---|---|---|
| AT4G29430 | -9091 | 588 | -2131 | -7260 |
| AT5G59850 | -8103 | -865 | -5450 | -4246 |
| AT3G46040 | -7427 | -4455 | -6324 | -4098 |
| AT1G07770 | -7174 | 3777 | 3974 | -6739 |
| AT2G19720 | -4423 | 1489 | -3182 | -1789 |
cell.wall.pectin.esterases.acetyl.esterase
| metric | value |
|---|---|
| setSize | 11 |
| pMANOVA | 0.00868 |
| p.adjustMANOVA | 0.0326 |
| s.dist | 0.912 |
| s.del3 | 0.429 |
| s.del5 | 0.485 |
| s.der3 | 0.401 |
| s.der5 | 0.502 |
| p.del3 | 0.0137 |
| p.del5 | 0.00536 |
| p.der3 | 0.0212 |
| p.der5 | 0.00397 |
Warning in xtfrm.data.frame(x): cannot xtfrm data frames
| Gene | der5 | del5 |
|---|---|---|
| AT3G05910 | 9939 | 9610 |
| AT5G26670 | 9174 | 8951 |
| AT4G19410 | 8386 | 9409 |
| AT5G23870 | 9046 | 5754 |
| AT5G45280 | 9874 | 3742 |
| AT2G46930 | 3001 | 8582 |
| AT1G57590 | 635 | 8910 |
Click HERE to show all gene set members
| del3 | del5 | der3 | der5 | |
|---|---|---|---|---|
| AT4G19410 | 9650 | 9409 | 8044 | 8386 |
| AT3G05910 | 9573 | 9610 | 7993 | 9939 |
| AT5G23870 | 9570 | 5754 | 7693 | 9046 |
| AT3G62060 | 5338 | 4038 | -2775 | -3047 |
| AT4G19420 | 5266 | -2033 | 4915 | 1690 |
| AT2G46930 | 4990 | 8582 | 1626 | 3001 |
| AT3G09405 | -3258 | -3181 | -6710 | 1633 |
| AT5G45280 | 2236 | 3742 | 8955 | 9874 |
| AT5G26670 | 2069 | 8951 | 5539 | 9174 |
| AT1G57590 | 860 | 8910 | -5341 | 635 |
| AT3G09410 | -705 | -2367 | 4960 | 6395 |
cell.wall.cell.wall.proteins.AGPs.AGP
| metric | value |
|---|---|
| setSize | 37 |
| pMANOVA | 6.97e-09 |
| p.adjustMANOVA | 1.98e-07 |
| s.dist | 0.888 |
| s.del3 | 0.482 |
| s.del5 | 0.373 |
| s.der3 | 0.499 |
| s.der5 | 0.411 |
| p.del3 | 3.85e-07 |
| p.del5 | 8.63e-05 |
| p.der3 | 1.52e-07 |
| p.der5 | 1.52e-05 |
Warning in xtfrm.data.frame(x): cannot xtfrm data frames
| Gene | der3 | del3 |
|---|---|---|
| AT5G06390 | 8592 | 9040 |
| AT5G10430 | 8167 | 9189 |
| AT4G12730 | 8703 | 8528 |
| AT2G04780 | 7854 | 9014 |
| AT5G18690 | 7476 | 9352 |
| AT2G47930 | 7997 | 8690 |
| AT5G44130 | 8175 | 8499 |
| AT2G23130 | 7285 | 9472 |
| AT4G37450 | 7811 | 8711 |
| AT5G65390 | 7661 | 8589 |
| AT3G11700 | 7840 | 8343 |
| AT2G46330 | 6038 | 9490 |
| AT2G45470 | 6401 | 8909 |
| AT1G03870 | 7956 | 6783 |
| AT5G55730 | 8222 | 6156 |
| AT3G52370 | 8051 | 5631 |
| AT3G46550 | 4650 | 8898 |
| AT2G22470 | 7013 | 4495 |
| AT1G55330 | 3913 | 6639 |
| AT2G14890 | 3473 | 7440 |
Click HERE to show all gene set members
| del3 | del5 | der3 | der5 | |
|---|---|---|---|---|
| AT2G46330 | 9490 | 2857 | 6038 | 9463 |
| AT2G23130 | 9472 | 4500 | 7285 | 5146 |
| AT5G18690 | 9352 | 9541 | 7476 | 5288 |
| AT4G16980 | 9316 | 8209 | -9012 | -2387 |
| AT5G10430 | 9189 | 9073 | 8167 | 9930 |
| AT5G06390 | 9040 | 8725 | 8592 | 9922 |
| AT2G04780 | 9014 | 8005 | 7854 | 9723 |
| AT2G45470 | 8909 | 9256 | 6401 | 8834 |
| AT3G46550 | 8898 | 8149 | 4650 | 8551 |
| AT4G37450 | 8711 | 3376 | 7811 | 9844 |
| AT2G47930 | 8690 | 7744 | 7997 | 8212 |
| AT5G65390 | 8589 | 3402 | 7661 | 9592 |
| AT3G06360 | 8550 | 2095 | -6678 | -5716 |
| AT4G12730 | 8528 | 8126 | 8703 | 9856 |
| AT5G44130 | 8499 | 8486 | 8175 | 3916 |
| AT3G11700 | 8343 | 4543 | 7840 | 7379 |
| AT4G31370 | -7724 | -2812 | -9408 | -8906 |
| AT2G14890 | 7440 | 5671 | 3473 | 4250 |
| AT1G03870 | 6783 | -1272 | 7956 | 8652 |
| AT1G55330 | 6639 | 4169 | 3913 | -3571 |
| AT1G35230 | -6192 | -9321 | -5598 | -4956 |
| AT5G55730 | 6156 | 9280 | 8222 | 9666 |
| AT1G68725 | 5897 | 3556 | 3683 | 4884 |
| AT3G52370 | 5631 | 8305 | 8051 | 6555 |
| AT2G22470 | 4495 | -4631 | 7013 | 7663 |
| AT5G64310 | -3326 | -8658 | -3828 | -1128 |
| AT5G53250 | 3124 | 3597 | 7498 | 9121 |
| AT4G40090 | -2701 | 3933 | 7870 | 6102 |
| AT3G61640 | -2202 | -6729 | -6136 | -467 |
| AT4G26320 | -2044 | -234 | 5856 | 1100 |
| AT4G09030 | 1927 | -6357 | -998 | -2326 |
| AT5G60490 | 1819 | 6367 | 8079 | 9052 |
| AT3G13520 | 1455 | 5435 | 5209 | -1550 |
| AT5G56540 | 979 | 5345 | 1179 | 5659 |
| AT3G60900 | 772 | 7446 | 3161 | 6356 |
| AT5G03170 | 678 | 2737 | 6262 | -1270 |
| AT5G40730 | 66 | 253 | 2039 | -4720 |
secondary.metabolism.flavonoids.isoflavones.isoflavone.reductase
| metric | value |
|---|---|
| setSize | 7 |
| pMANOVA | 0.0459 |
| p.adjustMANOVA | 0.101 |
| s.dist | 0.869 |
| s.del3 | -0.31 |
| s.del5 | -0.624 |
| s.der3 | -0.31 |
| s.der5 | -0.417 |
| p.del3 | 0.155 |
| p.del5 | 0.00424 |
| p.der3 | 0.156 |
| p.der5 | 0.0562 |
Warning in xtfrm.data.frame(x): cannot xtfrm data frames
| Gene | del5 | der5 |
|---|---|---|
| AT1G75280 | -9215 | -9550 |
| AT4G13660 | -9309 | -6262 |
| AT1G75290 | -6998 | -8049 |
| AT1G19540 | -7181 | -6829 |
| AT4G34540 | -9099 | -3304 |
Click HERE to show all gene set members
| del3 | del5 | der3 | der5 | |
|---|---|---|---|---|
| AT1G75280 | -9236 | -9215 | -9620 | -9550 |
| AT4G13660 | -9122 | -9309 | -1789 | -6262 |
| AT1G75290 | 8344 | -6998 | -8963 | -8049 |
| AT4G34540 | -6762 | -9099 | -8727 | -3304 |
| AT1G19540 | -4057 | -7181 | -1266 | -6829 |
| AT4G39230 | -911 | 7261 | 1730 | 2523 |
| AT1G75300 | -17 | -8850 | 2041 | 4538 |
hormone.metabolism.salicylic.acid.synthesis.degradation
| metric | value |
|---|---|
| setSize | 7 |
| pMANOVA | 0.0698 |
| p.adjustMANOVA | 0.13 |
| s.dist | 0.84 |
| s.del3 | -0.354 |
| s.del5 | -0.109 |
| s.der3 | -0.555 |
| s.der5 | -0.511 |
| p.del3 | 0.105 |
| p.del5 | 0.617 |
| p.der3 | 0.011 |
| p.der5 | 0.0192 |
Warning in xtfrm.data.frame(x): cannot xtfrm data frames
| Gene | der3 | der5 |
|---|---|---|
| AT5G04370 | -10172 | -8288 |
| AT1G05680 | -10096 | -7735 |
| AT5G37990 | -9312 | -8177 |
| AT5G38020 | -8167 | -5862 |
| AT1G66690 | -840 | -6383 |
| AT4G36470 | -496 | -4839 |
Click HERE to show all gene set members
| del3 | del5 | der3 | der5 | |
|---|---|---|---|---|
| AT5G38020 | -9064 | 209 | -8167 | -5862 |
| AT4G36470 | -8153 | -1429 | -496 | -4839 |
| AT5G37990 | -7861 | -7504 | -9312 | -8177 |
| AT5G04370 | -7590 | -3637 | -10172 | -8288 |
| AT1G05680 | 4233 | 6927 | -10096 | -7735 |
| AT1G05670 | 3582 | -9064 | -4322 | 7878 |
| AT1G66690 | 99 | 6439 | -840 | -6383 |
protein.synthesis.ribosome.biogenesis.Pre.rRNA.processing.and.modifications.WD.repeat.proteins
| metric | value |
|---|---|
| setSize | 6 |
| pMANOVA | 3.54e-05 |
| p.adjustMANOVA | 0.000282 |
| s.dist | 0.83 |
| s.del3 | -0.377 |
| s.del5 | 0.245 |
| s.der3 | -0.2 |
| s.der5 | 0.668 |
| p.del3 | 0.11 |
| p.del5 | 0.299 |
| p.der3 | 0.396 |
| p.der5 | 0.00457 |
Warning in xtfrm.data.frame(x): cannot xtfrm data frames
| Gene | der5 | del3 |
|---|---|---|
| AT5G16750 | 8414 | -5828 |
| AT4G04940 | 6911 | -5728 |
| AT3G21540 | 5795 | -4968 |
| AT5G14050 | 5212 | -4660 |
| AT2G47990 | 5274 | -4501 |
Click HERE to show all gene set members
| del3 | del5 | der3 | der5 | |
|---|---|---|---|---|
| AT5G16750 | -5828 | -4930 | -5230 | 8414 |
| AT4G04940 | -5728 | 5953 | 2641 | 6911 |
| AT3G21540 | -4968 | -372 | -3045 | 5795 |
| AT5G14050 | -4660 | 7416 | -3310 | 5212 |
| AT2G47990 | -4501 | 4434 | -2665 | 5274 |
| AT2G40360 | 3121 | 1429 | -4736 | 9159 |
PS.lightreaction.cyclic.electron.flow.chlororespiration
| metric | value |
|---|---|
| setSize | 9 |
| pMANOVA | 0.00337 |
| p.adjustMANOVA | 0.0149 |
| s.dist | 0.813 |
| s.del3 | 0.0443 |
| s.del5 | -0.00555 |
| s.der3 | -0.63 |
| s.der5 | -0.511 |
| p.del3 | 0.818 |
| p.del5 | 0.977 |
| p.der3 | 0.00106 |
| p.der5 | 0.00797 |
Warning in xtfrm.data.frame(x): cannot xtfrm data frames
| Gene | der3 | der5 |
|---|---|---|
| AT4G11960 | -9758 | -8418 |
| AT4G22260 | -9519 | -8455 |
| ATCG01100 | -8661 | -7031 |
| AT4G22890 | -7452 | -6406 |
| ATCG01110 | -7728 | -5911 |
| ATCG01090 | -4256 | -5325 |
| AT3G15840 | -9305 | -1630 |
Click HERE to show all gene set members
| del3 | del5 | der3 | der5 | |
|---|---|---|---|---|
| AT2G05620 | -6384 | 3022 | 434 | -246 |
| AT4G22890 | 5124 | 9457 | -7452 | -6406 |
| AT4G22260 | -4464 | -7692 | -9519 | -8455 |
| ATCG01110 | 4490 | -5618 | -7728 | -5911 |
| AT3G15840 | 4167 | 3476 | -9305 | -1630 |
| ATCG01100 | 2866 | -3429 | -8661 | -7031 |
| ATCG01090 | -2469 | 163 | -4256 | -5325 |
| AT1G64770 | -1959 | 8245 | -6232 | 513 |
| AT4G11960 | 1956 | -8829 | -9758 | -8418 |
PS.lightreaction.photosystem.I.LHC.I
| metric | value |
|---|---|
| setSize | 6 |
| pMANOVA | 0.00176 |
| p.adjustMANOVA | 0.00832 |
| s.dist | 0.804 |
| s.del3 | 0.0322 |
| s.del5 | 0.614 |
| s.der3 | -0.495 |
| s.der5 | 0.152 |
| p.del3 | 0.891 |
| p.del5 | 0.00923 |
| p.der3 | 0.0356 |
| p.der5 | 0.52 |
Warning in xtfrm.data.frame(x): cannot xtfrm data frames
| Gene | del5 | der3 |
|---|---|---|
| AT3G61470 | 7720 | -9152 |
| AT1G61520 | 4645 | -9215 |
| AT3G54890 | 3349 | -9144 |
| AT3G47470 | 2083 | -8910 |
| AT1G45474 | 8401 | -1175 |
Click HERE to show all gene set members
| del3 | del5 | der3 | der5 | |
|---|---|---|---|---|
| AT3G61470 | 4491 | 7720 | -9152 | 1320 |
| AT1G45474 | -3111 | 8401 | -1175 | 3953 |
| AT1G61520 | 397 | 4645 | -9215 | 2125 |
| AT3G47470 | -205 | 2083 | -8910 | 794 |
| AT1G34000 | -140 | 9432 | 3876 | -817 |
| AT3G54890 | 77 | 3349 | -9144 | 2985 |
redox.peroxiredoxin
| metric | value |
|---|---|
| setSize | 5 |
| pMANOVA | 0.0145 |
| p.adjustMANOVA | 0.0462 |
| s.dist | 0.798 |
| s.del3 | -0.398 |
| s.del5 | 0.487 |
| s.der3 | -0.226 |
| s.der5 | -0.435 |
| p.del3 | 0.123 |
| p.del5 | 0.0592 |
| p.der3 | 0.381 |
| p.der5 | 0.0917 |
Warning in xtfrm.data.frame(x): cannot xtfrm data frames
| Gene | del5 | der5 |
|---|---|---|
| AT3G06050 | 6437 | -6935 |
| AT1G65970 | 829 | -8280 |
| AT3G26060 | 9142 | -545 |
Click HERE to show all gene set members
| del3 | del5 | der3 | der5 | |
|---|---|---|---|---|
| AT1G65980 | -8207 | -1411 | -3597 | -6618 |
| AT3G06050 | -7783 | 6437 | -3949 | -6935 |
| AT1G65970 | -6548 | 829 | 3274 | -8280 |
| AT3G26060 | 4575 | 9142 | -8987 | -545 |
| AT3G52960 | -1881 | 8499 | -1645 | 2222 |
secondary.metabolism.phenylpropanoids.lignin.biosynthesis.4CL
| metric | value |
|---|---|
| setSize | 7 |
| pMANOVA | 0.0317 |
| p.adjustMANOVA | 0.0798 |
| s.dist | 0.786 |
| s.del3 | 0.00585 |
| s.del5 | 0.38 |
| s.der3 | 0.479 |
| s.der5 | 0.494 |
| p.del3 | 0.979 |
| p.del5 | 0.0816 |
| p.der3 | 0.0282 |
| p.der5 | 0.0237 |
Warning in xtfrm.data.frame(x): cannot xtfrm data frames
| Gene | der5 | der3 |
|---|---|---|
| AT3G21240 | 8773 | 7042 |
| AT1G51680 | 6226 | 7268 |
| AT5G63380 | 7192 | 6182 |
| AT3G21230 | 4866 | 7325 |
| AT1G65060 | 3277 | 4369 |
Click HERE to show all gene set members
| del3 | del5 | der3 | der5 | |
|---|---|---|---|---|
| AT4G05160 | 7988 | 4695 | -4064 | -2455 |
| AT3G21230 | -6684 | -8562 | 7325 | 4866 |
| AT4G19010 | 6044 | 2985 | -580 | 7685 |
| AT1G51680 | -5070 | 5895 | 7268 | 6226 |
| AT1G65060 | -2532 | 4443 | 4369 | 3277 |
| AT5G63380 | 2265 | 8290 | 6182 | 7192 |
| AT3G21240 | -2061 | 7791 | 7042 | 8773 |
protein.assembly.and.cofactor.ligation
| metric | value |
|---|---|
| setSize | 21 |
| pMANOVA | 4.56e-08 |
| p.adjustMANOVA | 9.78e-07 |
| s.dist | 0.779 |
| s.del3 | -0.316 |
| s.del5 | 0.349 |
| s.der3 | -0.417 |
| s.der5 | -0.46 |
| p.del3 | 0.0121 |
| p.del5 | 0.00561 |
| p.der3 | 0.000927 |
| p.der5 | 0.000265 |
Warning in xtfrm.data.frame(x): cannot xtfrm data frames
| Gene | der5 | der3 |
|---|---|---|
| AT3G10670 | -6096.0 | -8946.0 |
| AT5G54290 | -6275.0 | -8546.0 |
| AT4G01940 | -8154.0 | -6538.0 |
| AT5G17170 | -4714.0 | -8694.0 |
| ATCG01130 | -4482.0 | -8773.0 |
| ATCG00360 | -7148.0 | -5190.0 |
| AT4G04770 | -8001.0 | -4357.0 |
| AT1G51390 | -5345.0 | -5468.0 |
| AT5G49940 | -6422.0 | -4140.0 |
| AT3G20970 | -6580.0 | -3747.0 |
| AT5G23120 | -2834.0 | -8270.0 |
| AT1G54500 | -2269.0 | -7805.0 |
| AT3G24430 | -1851.0 | -8286.0 |
| AT3G26710 | -2479.0 | -5500.0 |
| AT4G37200 | -1845.0 | -4811.0 |
| ATCG00860 | -5230.5 | -994.5 |
| ATCG01280 | -5230.5 | -994.5 |
| AT4G25910 | -876.0 | -5740.0 |
Click HERE to show all gene set members
| del3 | del5 | der3 | der5 | |
|---|---|---|---|---|
| AT4G01940 | -9207.0 | -3745.0 | -6538.0 | -8154.0 |
| AT5G49940 | 9037.0 | 5146.0 | -4140.0 | -6422.0 |
| AT4G22220 | -8663.0 | -4751.0 | 6574.0 | -6624.0 |
| AT4G25910 | -8338.0 | -7551.0 | -5740.0 | -876.0 |
| AT3G26710 | -8327.0 | 1174.0 | -5500.0 | -2479.0 |
| AT3G10670 | -8053.0 | 3624.0 | -8946.0 | -6096.0 |
| AT4G37200 | -7032.0 | 1582.0 | -4811.0 | -1845.0 |
| AT5G17170 | -5554.0 | 7016.0 | -8694.0 | -4714.0 |
| AT3G24430 | 4709.0 | 9323.0 | -8286.0 | -1851.0 |
| ATCG00860 | -3789.5 | 3773.5 | -994.5 | -5230.5 |
| ATCG01280 | -3789.5 | 3773.5 | -994.5 | -5230.5 |
| AT1G54500 | -3674.0 | 9316.0 | -7805.0 | -2269.0 |
| AT3G20970 | -3139.0 | -407.0 | -3747.0 | -6580.0 |
| AT1G64810 | -2821.0 | -4401.0 | 1705.0 | -3041.0 |
| AT5G54290 | -2691.0 | 8833.0 | -8546.0 | -6275.0 |
| ATCG00360 | -2445.0 | 8458.0 | -5190.0 | -7148.0 |
| AT5G23120 | -2233.0 | 9144.0 | -8270.0 | -2834.0 |
| AT4G04770 | -2030.0 | 8284.0 | -4357.0 | -8001.0 |
| ATCG01130 | 1027.0 | -3336.0 | -8773.0 | -4482.0 |
| AT1G51390 | 818.0 | 6221.0 | -5468.0 | -5345.0 |
| AT1G59840 | -243.0 | 8698.0 | -3370.0 | 5936.0 |
development.late.embryogenesis.abundant
| metric | value |
|---|---|
| setSize | 15 |
| pMANOVA | 0.0107 |
| p.adjustMANOVA | 0.0382 |
| s.dist | 0.764 |
| s.del3 | -0.33 |
| s.del5 | -0.343 |
| s.der3 | -0.377 |
| s.der5 | -0.464 |
| p.del3 | 0.0267 |
| p.del5 | 0.0213 |
| p.der3 | 0.0114 |
| p.der5 | 0.00187 |
Warning in xtfrm.data.frame(x): cannot xtfrm data frames
| Gene | der5 | der3 |
|---|---|---|
| AT2G35300 | -9068 | -10289 |
| AT2G36640 | -8700 | -10357 |
| AT5G06760 | -7452 | -10090 |
| AT1G52690 | -7491 | -9978 |
| AT3G15670 | -6849 | -9788 |
| AT4G02380 | -9104 | -6907 |
| AT1G01470 | -6378 | -9100 |
| AT1G32560 | -6062 | -7732 |
| AT3G53040 | -3381 | -9881 |
Click HERE to show all gene set members
| del3 | del5 | der3 | der5 | |
|---|---|---|---|---|
| AT1G32560 | -9508 | -7235 | -7732 | -6062 |
| AT2G35300 | -9093 | -9463 | -10289 | -9068 |
| AT1G01470 | -8658 | -9742 | -9100 | -6378 |
| AT5G06760 | -8536 | -5149 | -10090 | -7452 |
| AT2G46140 | -8201 | 5528 | 5240 | -3260 |
| AT5G54370 | 8203 | 2404 | 2816 | -3035 |
| AT3G15670 | -7786 | -9273 | -9788 | -6849 |
| AT2G36640 | -7639 | -9808 | -10357 | -8700 |
| AT3G50790 | 7523 | 5600 | -4556 | 2684 |
| AT5G60530 | 7339 | 2377 | 4553 | 1841 |
| AT1G54890 | 6350 | 32 | 8905 | 9119 |
| AT3G53040 | -5976 | -7180 | -9881 | -3381 |
| AT1G52690 | -5831 | -4413 | -9978 | -7491 |
| AT2G44060 | -5494 | 4219 | 293 | -7453 |
| AT4G02380 | -2243 | -9586 | -6907 | -9104 |
transport.Major.Intrinsic.Proteins.TIP
| metric | value |
|---|---|
| setSize | 7 |
| pMANOVA | 0.0831 |
| p.adjustMANOVA | 0.147 |
| s.dist | 0.751 |
| s.del3 | -0.523 |
| s.del5 | -0.221 |
| s.der3 | -0.089 |
| s.der5 | -0.483 |
| p.del3 | 0.0166 |
| p.del5 | 0.311 |
| p.der3 | 0.683 |
| p.der5 | 0.0268 |
Warning in xtfrm.data.frame(x): cannot xtfrm data frames
| Gene | del3 | der5 |
|---|---|---|
| AT4G17340 | -9554 | -9366 |
| AT5G47450 | -9859 | -9037 |
| AT4G01470 | -7819 | -8541 |
| AT2G36830 | -3805 | -8190 |
Click HERE to show all gene set members
| del3 | del5 | der3 | der5 | |
|---|---|---|---|---|
| AT5G47450 | -9859 | -7868 | -10379 | -9037 |
| AT4G17340 | -9554 | -8312 | -10426 | -9366 |
| AT2G25810 | -8318 | 6636 | 6695 | 4542 |
| AT4G01470 | -7819 | -6348 | -5861 | -8541 |
| AT3G16240 | 5783 | 3056 | 6479 | -1361 |
| AT2G36830 | -3805 | -2267 | -4308 | -8190 |
| AT3G26520 | -2776 | -641 | 6358 | 463 |
hormone.metabolism.jasmonate.synthesis.degradation.12.Oxo.PDA.reductase
| metric | value |
|---|---|
| setSize | 5 |
| pMANOVA | 0.0554 |
| p.adjustMANOVA | 0.115 |
| s.dist | 0.75 |
| s.del3 | 0.167 |
| s.del5 | -0.132 |
| s.der3 | -0.438 |
| s.der5 | -0.57 |
| p.del3 | 0.518 |
| p.del5 | 0.608 |
| p.der3 | 0.0901 |
| p.der5 | 0.0272 |
Warning in xtfrm.data.frame(x): cannot xtfrm data frames
| Gene | der5 | der3 |
|---|---|---|
| AT1G76680 | -9338 | -9821 |
| AT2G06050 | -7795 | -7407 |
| AT1G18020 | -3330 | -2491 |
Click HERE to show all gene set members
| del3 | del5 | der3 | der5 | |
|---|---|---|---|---|
| AT1G18020 | 9572 | 6567 | -2491 | -3330 |
| AT1G17990 | 6095 | -1419 | -8172 | 284 |
| AT1G76690 | -5223 | -5458 | 2622 | -6587 |
| AT1G76680 | -2158 | -975 | -9821 | -9338 |
| AT2G06050 | -429 | -5606 | -7407 | -7795 |
nucleotide.metabolism.salvage.phosphoribosyltransferases.upp
| metric | value |
|---|---|
| setSize | 5 |
| pMANOVA | 0.164 |
| p.adjustMANOVA | 0.258 |
| s.dist | 0.742 |
| s.del3 | 0.438 |
| s.del5 | 0.205 |
| s.der3 | 0.0484 |
| s.der5 | 0.561 |
| p.del3 | 0.0902 |
| p.del5 | 0.427 |
| p.der3 | 0.851 |
| p.der5 | 0.03 |
Warning in xtfrm.data.frame(x): cannot xtfrm data frames
| Gene | der5 | del3 |
|---|---|---|
| AT3G27190 | 7257 | 9179 |
| AT5G40870 | 7809 | 7917 |
| AT4G26510 | 8984 | 4189 |
Click HERE to show all gene set members
| del3 | del5 | der3 | der5 | |
|---|---|---|---|---|
| AT3G27190 | 9179 | 5070 | 8530 | 7257 |
| AT5G40870 | 7917 | 943 | 1276 | 7809 |
| AT4G26510 | 4189 | 2836 | 429 | 8984 |
| AT1G55810 | -2987 | -6700 | -6004 | 5654 |
| AT3G53900 | 2834 | 7516 | -5665 | -1022 |
protein.synthesis.ribosome.biogenesis.Pre.rRNA.processing.and.modifications.misc
| metric | value |
|---|---|
| setSize | 9 |
| pMANOVA | 0.00279 |
| p.adjustMANOVA | 0.0126 |
| s.dist | 0.728 |
| s.del3 | -0.471 |
| s.del5 | -0.367 |
| s.der3 | -0.397 |
| s.der5 | 0.124 |
| p.del3 | 0.0143 |
| p.del5 | 0.0563 |
| p.der3 | 0.0392 |
| p.der5 | 0.518 |
Warning in xtfrm.data.frame(x): cannot xtfrm data frames
| Gene | del3 | der3 |
|---|---|---|
| AT3G55620 | -7703 | -8412 |
| AT5G60340 | -9675 | -6185 |
| AT3G56510 | -7172 | -5584 |
| AT3G22660 | -6985 | -2603 |
| AT2G47420 | -5572 | -2542 |
| AT3G51270 | -2235 | -5455 |
| AT5G37350 | -2163 | -5104 |
| AT1G43860 | -6712 | -108 |
Click HERE to show all gene set members
| del3 | del5 | der3 | der5 | |
|---|---|---|---|---|
| AT5G60340 | -9675 | -4800 | -6185 | -7377 |
| AT3G55620 | -7703 | -9619 | -8412 | -2308 |
| AT3G56510 | -7172 | -3756 | -5584 | -2520 |
| AT3G22660 | -6985 | 625 | -2603 | 5172 |
| AT1G43860 | -6712 | -2617 | -108 | 5504 |
| AT1G06720 | 6041 | 5269 | -5882 | 9168 |
| AT2G47420 | -5572 | -3811 | -2542 | -2792 |
| AT3G51270 | -2235 | -6962 | -5455 | 5094 |
| AT5G37350 | -2163 | -7466 | -5104 | 3198 |
PS.lightreaction.other.electron.carrier..ox.red..ferredoxin
| metric | value |
|---|---|
| setSize | 5 |
| pMANOVA | 0.0668 |
| p.adjustMANOVA | 0.128 |
| s.dist | 0.728 |
| s.del3 | -0.0936 |
| s.del5 | 0.389 |
| s.der3 | -0.353 |
| s.der5 | -0.495 |
| p.del3 | 0.717 |
| p.del5 | 0.132 |
| p.der3 | 0.171 |
| p.der5 | 0.0553 |
Warning in xtfrm.data.frame(x): cannot xtfrm data frames
| Gene | der5 | del5 |
|---|---|---|
| AT1G60950 | -8505 | 9397 |
| AT1G10960 | -6029 | 8454 |
| AT4G32590 | -4776 | 8021 |
Click HERE to show all gene set members
| del3 | del5 | der3 | der5 | |
|---|---|---|---|---|
| AT5G07950 | -7814 | -9336 | -3213 | -3942 |
| AT1G02180 | 2649 | 2122 | 7261 | 183 |
| AT1G10960 | -2538 | 8454 | -7268 | -6029 |
| AT4G32590 | 2556 | 8021 | -8057 | -4776 |
| AT1G60950 | 234 | 9397 | -9847 | -8505 |
protein.synthesis.ribosome.biogenesis.BRIX
| metric | value |
|---|---|
| setSize | 6 |
| pMANOVA | 0.00136 |
| p.adjustMANOVA | 0.00673 |
| s.dist | 0.721 |
| s.del3 | -0.378 |
| s.del5 | -0.19 |
| s.der3 | -0.214 |
| s.der5 | 0.544 |
| p.del3 | 0.109 |
| p.del5 | 0.421 |
| p.der3 | 0.364 |
| p.der5 | 0.021 |
Warning in xtfrm.data.frame(x): cannot xtfrm data frames
| Gene | der5 | del3 |
|---|---|---|
| AT1G52930 | 6669 | -6956 |
| AT5G61770 | 6467 | -5408 |
| AT1G63780 | 4670 | -3085 |
| AT3G23620 | 1200 | -7390 |
| AT3G15460 | 6315 | -356 |
Click HERE to show all gene set members
| del3 | del5 | der3 | der5 | |
|---|---|---|---|---|
| AT3G23620 | -7390 | -6951 | -2467 | 1200 |
| AT1G52930 | -6956 | 2807 | -3401 | 6669 |
| AT5G61770 | -5408 | -7970 | -2331 | 6467 |
| AT1G63780 | -3085 | -5042 | -4091 | 4670 |
| AT4G01560 | 592 | 6307 | -5392 | 8120 |
| AT3G15460 | -356 | -779 | 520 | 6315 |
protein.synthesis.ribosome.biogenesis.Pre.rRNA.processing.and.modifications.DExD.box.helicases
| metric | value |
|---|---|
| setSize | 14 |
| pMANOVA | 5.1e-06 |
| p.adjustMANOVA | 6.76e-05 |
| s.dist | 0.72 |
| s.del3 | 0.301 |
| s.del5 | -0.063 |
| s.der3 | -0.141 |
| s.der5 | 0.635 |
| p.del3 | 0.0508 |
| p.del5 | 0.683 |
| p.der3 | 0.361 |
| p.der5 | 3.88e-05 |
Warning in xtfrm.data.frame(x): cannot xtfrm data frames
| Gene | der5 | del3 |
|---|---|---|
| AT5G65900 | 9321 | 9596 |
| AT1G17690 | 8442 | 9102 |
| AT1G33390 | 8227 | 8817 |
| AT3G09720 | 8835 | 7487 |
| AT5G05450 | 8990 | 5256 |
| AT1G77030 | 9410 | 1273 |
| AT5G60990 | 6300 | 1864 |
| AT3G16840 | 7279 | 958 |
| AT1G16280 | 1234 | 4096 |
| AT5G54910 | 1118 | 208 |
Click HERE to show all gene set members
| del3 | del5 | der3 | der5 | |
|---|---|---|---|---|
| AT5G65900 | 9596 | 4204 | -4265 | 9321 |
| AT1G17690 | 9102 | -1206 | 589 | 8442 |
| AT1G33390 | 8817 | 1327 | 6072 | 8227 |
| AT3G09720 | 7487 | 6625 | -382 | 8835 |
| AT5G05450 | 5256 | -2806 | 2264 | 8990 |
| AT1G16280 | 4096 | -6222 | -6798 | 1234 |
| AT3G19760 | -3590 | 4841 | 6407 | -2793 |
| AT1G31970 | -3027 | -4618 | -6084 | 6096 |
| AT5G60990 | 1864 | -2233 | -613 | 6300 |
| AT4G34910 | -1506 | -8535 | -6271 | 9636 |
| AT1G77030 | 1273 | 5863 | -6109 | 9410 |
| AT3G16840 | 958 | -4361 | -3360 | 7279 |
| AT5G54910 | 208 | -286 | -4684 | 1118 |
| AT2G06990 | -65 | -2351 | -6766 | 8396 |
transport.metabolite.transporters.at.the.envelope.membrane
| metric | value |
|---|---|
| setSize | 21 |
| pMANOVA | 0.000537 |
| p.adjustMANOVA | 0.00289 |
| s.dist | 0.719 |
| s.del3 | 0.17 |
| s.del5 | 0.38 |
| s.der3 | 0.453 |
| s.der5 | 0.371 |
| p.del3 | 0.178 |
| p.del5 | 0.00255 |
| p.der3 | 0.000321 |
| p.der5 | 0.00321 |
Warning in xtfrm.data.frame(x): cannot xtfrm data frames
| Gene | der3 | del5 |
|---|---|---|
| AT1G12500 | 7698 | 9049 |
| AT5G04160 | 7487 | 8939 |
| AT5G33320 | 5303 | 9274 |
| AT5G54800 | 6028 | 7661 |
| AT1G06470 | 7448 | 5494 |
| AT5G05820 | 5376 | 6701 |
| AT5G17520 | 3321 | 9396 |
| AT5G17630 | 6002 | 5123 |
| AT5G12860 | 4528 | 6296 |
| AT4G32390 | 1555 | 6386 |
| AT3G14410 | 7274 | 1291 |
| AT4G32400 | 6351 | 1151 |
| AT3G08580 | 2991 | 2048 |
| AT1G77610 | 1096 | 984 |
Click HERE to show all gene set members
| del3 | del5 | der3 | der5 | |
|---|---|---|---|---|
| AT5G04160 | 9468 | 8939 | 7487 | 6073 |
| AT5G11230 | -9054 | -4837 | 1780 | -5116 |
| AT1G06470 | 8665 | 5494 | 7448 | 9543 |
| AT2G25520 | -7981 | -172 | 1401 | -6296 |
| AT5G12860 | -7852 | 6296 | 4528 | 1808 |
| AT5G05820 | 7539 | 6701 | 5376 | 6804 |
| AT1G12500 | 7513 | 9049 | 7698 | 9399 |
| AT3G17430 | 6928 | -781 | 568 | 5130 |
| AT5G33320 | 6741 | 9274 | 5303 | 4110 |
| AT3G08580 | -6061 | 2048 | 2991 | -848 |
| AT3G14410 | 6089 | 1291 | 7274 | 7735 |
| AT3G11320 | 4710 | -1764 | 3797 | 8476 |
| AT5G17630 | -4196 | 5123 | 6002 | 9304 |
| AT1G48230 | 4199 | -740 | -262 | 5226 |
| AT5G46110 | 4160 | 6346 | -7336 | 6681 |
| AT1G77610 | 3467 | 984 | 1096 | 4919 |
| AT3G10290 | -2451 | -1260 | 4913 | 2238 |
| AT4G32390 | 2443 | 6386 | 1555 | -1159 |
| AT5G54800 | 2184 | 7661 | 6028 | 3573 |
| AT4G32400 | -1821 | 1151 | 6351 | 1975 |
| AT5G17520 | -1132 | 9396 | 3321 | 1886 |
major.CHO.metabolism.synthesis.starch.AGPase
| metric | value |
|---|---|
| setSize | 8 |
| pMANOVA | 0.0465 |
| p.adjustMANOVA | 0.101 |
| s.dist | 0.717 |
| s.del3 | 0.559 |
| s.del5 | 0.404 |
| s.der3 | -0.0379 |
| s.der5 | 0.191 |
| p.del3 | 0.00616 |
| p.del5 | 0.048 |
| p.der3 | 0.853 |
| p.der5 | 0.349 |
Warning in xtfrm.data.frame(x): cannot xtfrm data frames
| Gene | del3 | del5 |
|---|---|---|
| AT5G48300 | 6296 | 8320 |
| AT5G19220 | 8355 | 6169 |
| AT1G05610 | 8506 | 4479 |
| AT1G27680 | 7394 | 2399 |
| AT2G21590 | 1821 | 7582 |
| AT1G74910 | 4603 | 1288 |
Click HERE to show all gene set members
| del3 | del5 | der3 | der5 | |
|---|---|---|---|---|
| AT1G05610 | 8506 | 4479 | -3097 | -3795 |
| AT5G19220 | 8355 | 6169 | 3819 | 8723 |
| AT1G27680 | 7394 | 2399 | -7497 | -672 |
| AT2G04650 | 7113 | -4606 | 7007 | 7948 |
| AT5G48300 | 6296 | 8320 | -6724 | -2032 |
| AT1G74910 | 4603 | 1288 | 3217 | 3535 |
| AT2G21590 | 1821 | 7582 | -4270 | 3002 |
| AT4G39210 | -737 | 5403 | -1516 | 208 |
cell.wall.cellulose.synthesis.COBRA
| metric | value |
|---|---|
| setSize | 7 |
| pMANOVA | 0.0166 |
| p.adjustMANOVA | 0.05 |
| s.dist | 0.706 |
| s.del3 | 0.409 |
| s.del5 | 0.2 |
| s.der3 | 0.538 |
| s.der5 | -0.0465 |
| p.del3 | 0.0612 |
| p.del5 | 0.358 |
| p.der3 | 0.0136 |
| p.der5 | 0.831 |
Warning in xtfrm.data.frame(x): cannot xtfrm data frames
| Gene | der3 | del3 |
|---|---|---|
| AT5G60920 | 8702 | 9467 |
| AT3G29810 | 7714 | 9675 |
| AT5G60950 | 7822 | 9326 |
| AT4G16120 | 7561 | 9017 |
Click HERE to show all gene set members
| del3 | del5 | der3 | der5 | |
|---|---|---|---|---|
| AT3G29810 | 9675 | 9426 | 7714 | -5938 |
| AT5G60920 | 9467 | 9374 | 8702 | 9642 |
| AT5G60950 | 9326 | 5548 | 7822 | 2958 |
| AT4G16120 | 9017 | 314 | 7561 | 6084 |
| AT3G02210 | -7531 | -7892 | -7050 | -2868 |
| AT3G16860 | -2070 | -7815 | 1988 | -6320 |
| AT5G15630 | -291 | 4247 | 4884 | -5076 |
secondary.metabolism.flavonoids.flavonols
| metric | value |
|---|---|
| setSize | 7 |
| pMANOVA | 0.0585 |
| p.adjustMANOVA | 0.12 |
| s.dist | 0.706 |
| s.del3 | 0.238 |
| s.del5 | -0.0588 |
| s.der3 | 0.604 |
| s.der5 | 0.272 |
| p.del3 | 0.275 |
| p.del5 | 0.788 |
| p.der3 | 0.00566 |
| p.der5 | 0.213 |
Warning in xtfrm.data.frame(x): cannot xtfrm data frames
| Gene | der3 | der5 |
|---|---|---|
| AT4G25310 | 8789 | 9823 |
| AT4G25300 | 8366 | 5764 |
| AT3G21420 | 6595 | 7013 |
| AT2G44800 | 1643 | 1475 |
Click HERE to show all gene set members
| del3 | del5 | der3 | der5 | |
|---|---|---|---|---|
| AT3G60290 | 7264 | -2711 | -519 | 2493 |
| AT3G21420 | -6362 | -3100 | 6595 | 7013 |
| AT2G44800 | 5780 | -6523 | 1643 | 1475 |
| AT4G33360 | 5354 | 8227 | 4966 | -5538 |
| AT4G25310 | 2921 | 976 | 8789 | 9823 |
| AT3G50210 | 1647 | -5984 | 6278 | -693 |
| AT4G25300 | -702 | 4524 | 8366 | 5764 |
cell.wall.hemicellulose.synthesis.glucuronoxylan
| metric | value |
|---|---|
| setSize | 9 |
| pMANOVA | 0.045 |
| p.adjustMANOVA | 0.101 |
| s.dist | 0.7 |
| s.del3 | 0.243 |
| s.del5 | 0.182 |
| s.der3 | 0.589 |
| s.der5 | 0.226 |
| p.del3 | 0.207 |
| p.del5 | 0.344 |
| p.der3 | 0.00223 |
| p.der5 | 0.241 |
Warning in xtfrm.data.frame(x): cannot xtfrm data frames
| Gene | der3 | del3 |
|---|---|---|
| AT1G19300 | 7492 | 9219 |
| AT4G33330 | 8022 | 7755 |
| AT1G77130 | 7649 | 5957 |
| AT4G36890 | 4782 | 3188 |
| AT5G22940 | 5687 | 2330 |
Click HERE to show all gene set members
| del3 | del5 | der3 | der5 | |
|---|---|---|---|---|
| AT1G19300 | 9219 | 8682 | 7492 | 494 |
| AT4G33330 | 7755 | 2720 | 8022 | 9460 |
| AT1G77130 | 5957 | 7400 | 7649 | 5366 |
| AT5G54690 | -4397 | -983 | 6828 | -2667 |
| AT4G36890 | 3188 | -220 | 4782 | 5948 |
| AT5G22940 | 2330 | 4330 | 5687 | 9771 |
| AT3G18660 | -1250 | -1760 | 3681 | -4485 |
| AT2G37090 | -1150 | 1127 | 4932 | 2259 |
| AT2G28110 | -809 | -5950 | -3982 | -4072 |
RNA.regulation.of.transcription.CCAAT.box.binding.factor.family..HAP2
| metric | value |
|---|---|
| setSize | 10 |
| pMANOVA | 0.0414 |
| p.adjustMANOVA | 0.098 |
| s.dist | 0.689 |
| s.del3 | 0.47 |
| s.del5 | 0.276 |
| s.der3 | 0.395 |
| s.der5 | 0.149 |
| p.del3 | 0.0101 |
| p.del5 | 0.131 |
| p.der3 | 0.0307 |
| p.der5 | 0.416 |
Warning in xtfrm.data.frame(x): cannot xtfrm data frames
| Gene | del3 | der3 |
|---|---|---|
| AT3G14020 | 9525 | 8221 |
| AT3G05690 | 8072 | 8398 |
| AT1G72830 | 9706 | 6270 |
| AT1G17590 | 8623 | 6516 |
| AT1G30500 | 2626 | 3954 |
| AT5G06510 | 1150 | 8728 |
| AT3G20910 | 3926 | 310 |
Click HERE to show all gene set members
| del3 | del5 | der3 | der5 | |
|---|---|---|---|---|
| AT1G72830 | 9706 | 3401 | 6270 | 7414 |
| AT3G14020 | 9525 | 8406 | 8221 | 6858 |
| AT1G17590 | 8623 | 3005 | 6516 | 8094 |
| AT1G54160 | 8131 | 8048 | -10042 | -8259 |
| AT3G05690 | 8072 | 8568 | 8398 | 6027 |
| AT5G12840 | -4188 | -9257 | -8851 | -8583 |
| AT3G20910 | 3926 | 1256 | 310 | 2063 |
| AT1G30500 | 2626 | -4595 | 3954 | -4954 |
| AT2G34720 | -2133 | 1643 | 7569 | 4073 |
| AT5G06510 | 1150 | 5761 | 8728 | 4224 |
cell.wall.pectin.esterases.misc
| metric | value |
|---|---|
| setSize | 6 |
| pMANOVA | 0.253 |
| p.adjustMANOVA | 0.368 |
| s.dist | 0.686 |
| s.del3 | 0.431 |
| s.del5 | 0.164 |
| s.der3 | 0.436 |
| s.der5 | 0.26 |
| p.del3 | 0.0674 |
| p.del5 | 0.485 |
| p.der3 | 0.0646 |
| p.der5 | 0.27 |
Warning in xtfrm.data.frame(x): cannot xtfrm data frames
| Gene | der3 | del3 |
|---|---|---|
| AT3G59010 | 6117 | 9456 |
| AT2G45220 | 8758 | 6314 |
| AT3G47400 | 5305 | 4372 |
| AT5G64640 | 1457 | 2868 |
Click HERE to show all gene set members
| del3 | del5 | der3 | der5 | |
|---|---|---|---|---|
| AT3G59010 | 9456 | 9679 | 6117 | 2799 |
| AT2G45220 | 6314 | 4 | 8758 | 8077 |
| AT5G48450 | 6168 | -1339 | -2081 | 930 |
| AT1G23200 | -4192 | -6138 | 1505 | -3940 |
| AT3G47400 | 4372 | 4783 | 5305 | 4244 |
| AT5G64640 | 2868 | 2211 | 1457 | 4612 |
transport.NDP.sugars.at.the.ER
| metric | value |
|---|---|
| setSize | 7 |
| pMANOVA | 0.0405 |
| p.adjustMANOVA | 0.097 |
| s.dist | 0.686 |
| s.del3 | 0.52 |
| s.del5 | 0.016 |
| s.der3 | 0.426 |
| s.der5 | 0.132 |
| p.del3 | 0.0171 |
| p.del5 | 0.942 |
| p.der3 | 0.051 |
| p.der5 | 0.544 |
Warning in xtfrm.data.frame(x): cannot xtfrm data frames
| Gene | del3 | der3 |
|---|---|---|
| AT4G23010 | 9288 | 8794 |
| AT2G13650 | 6336 | 4566 |
| AT4G39390 | 5961 | 4543 |
| AT1G14360 | 7828 | 1517 |
| AT3G46180 | 7154 | 1607 |
Click HERE to show all gene set members
| del3 | del5 | der3 | der5 | |
|---|---|---|---|---|
| AT4G23010 | 9288 | 4866 | 8794 | 9438 |
| AT1G14360 | 7828 | 7441 | 1517 | 1705 |
| AT3G46180 | 7154 | -5848 | 1607 | 199 |
| AT2G13650 | 6336 | 86 | 4566 | 4887 |
| AT4G39390 | 5961 | -892 | 4543 | 5561 |
| AT4G32270 | -5508 | -351 | 4571 | -5796 |
| AT2G02810 | 4211 | -4761 | -1698 | -5229 |
cell.cell.death.plants
| metric | value |
|---|---|
| setSize | 5 |
| pMANOVA | 0.257 |
| p.adjustMANOVA | 0.369 |
| s.dist | 0.682 |
| s.del3 | -0.179 |
| s.del5 | -0.576 |
| s.der3 | -0.225 |
| s.der5 | -0.224 |
| p.del3 | 0.489 |
| p.del5 | 0.0258 |
| p.der3 | 0.383 |
| p.der5 | 0.385 |
Warning in xtfrm.data.frame(x): cannot xtfrm data frames
| Gene | del5 | der3 |
|---|---|---|
| AT5G64830 | -7981 | -6735 |
| AT3G44880 | -4387 | -9578 |
| AT2G34690 | -8507 | -2362 |
| AT5G23040 | -1189 | -3385 |
Click HERE to show all gene set members
| del3 | del5 | der3 | der5 | |
|---|---|---|---|---|
| AT2G34690 | -9555 | -8507 | -2362 | -7815 |
| AT5G23040 | -5770 | -1189 | -3385 | -1024 |
| AT5G64830 | 5252 | -7981 | -6735 | 5179 |
| AT1G29690 | 2393 | -6566 | 7205 | 245 |
| AT3G44880 | -1399 | -4387 | -9578 | -6391 |
Biodegradation.of.Xenobiotics.hydroxyacylglutathione.hydrolase
| metric | value |
|---|---|
| setSize | 5 |
| pMANOVA | 0.053 |
| p.adjustMANOVA | 0.111 |
| s.dist | 0.675 |
| s.del3 | 0.0255 |
| s.del5 | -0.518 |
| s.der3 | 0.0349 |
| s.der5 | -0.431 |
| p.del3 | 0.921 |
| p.del5 | 0.0447 |
| p.der3 | 0.892 |
| p.der5 | 0.0953 |
Warning in xtfrm.data.frame(x): cannot xtfrm data frames
| Gene | del5 | der5 |
|---|---|---|
| AT2G31350 | -9468 | -5522 |
| AT1G06130 | -6945 | -5241 |
| AT1G53580 | -3142 | -7586 |
| AT3G10850 | -982 | -3865 |
Click HERE to show all gene set members
| del3 | del5 | der3 | der5 | |
|---|---|---|---|---|
| AT2G43430 | 8256 | -5282 | 7196 | 2290 |
| AT2G31350 | -6651 | -9468 | 4906 | -5522 |
| AT1G53580 | -3745 | -3142 | -3683 | -7586 |
| AT1G06130 | 2516 | -6945 | -10117 | -5241 |
| AT3G10850 | 551 | -982 | -398 | -3865 |
protein.postranslational.modification.kinase
| metric | value |
|---|---|
| setSize | 17 |
| pMANOVA | 0.00101 |
| p.adjustMANOVA | 0.00527 |
| s.dist | 0.675 |
| s.del3 | 0.473 |
| s.del5 | -0.0365 |
| s.der3 | 0.245 |
| s.der5 | 0.413 |
| p.del3 | 0.000734 |
| p.del5 | 0.795 |
| p.der3 | 0.0801 |
| p.der5 | 0.0032 |
Warning in xtfrm.data.frame(x): cannot xtfrm data frames
| Gene | del3 | der5 |
|---|---|---|
| AT3G24715 | 9134 | 9366 |
| AT4G13020 | 9107 | 9089 |
| AT3G63280 | 7930 | 9552 |
| AT1G57870 | 8235 | 8942 |
| AT1G49180 | 8900 | 8008 |
| AT2G22560 | 7434 | 7527 |
| AT2G42640 | 8812 | 6008 |
| AT1G54610 | 7044 | 6274 |
| AT3G48190 | 6520 | 6593 |
| AT3G01090 | 5272 | 7783 |
| AT3G60250 | 5690 | 1156 |
Click HERE to show all gene set members
| del3 | del5 | der3 | der5 | |
|---|---|---|---|---|
| AT3G24715 | 9134 | 6909 | 6842 | 9366 |
| AT4G13020 | 9107 | 8256 | 7697 | 9089 |
| AT1G49180 | 8900 | -3086 | 5312 | 8008 |
| AT2G42640 | 8812 | 2474 | 3657 | 6008 |
| AT4G29810 | 8788 | 4527 | 5072 | -3514 |
| AT1G57870 | 8235 | 4817 | 4844 | 8942 |
| AT3G63280 | 7930 | -4921 | 8618 | 9552 |
| AT2G22560 | 7434 | 6258 | 4879 | 7527 |
| AT1G54610 | 7044 | 4775 | -1287 | 6274 |
| AT3G48190 | 6520 | -523 | 2198 | 6593 |
| AT2G25880 | -5764 | -4394 | -4168 | 42 |
| AT3G60250 | 5690 | -7121 | 3211 | 1156 |
| AT4G33950 | -5018 | -6860 | -7739 | -7012 |
| AT3G01090 | 5272 | 3093 | 1105 | 7783 |
| AT4G11845 | -2116 | -9505 | -2738 | -2170 |
| AT3G04910 | -1929 | -2927 | -682 | 6755 |
| AT4G11890 | -336 | -9201 | -8914 | -1537 |
cell.wall.precursor.synthesis.UGE
| metric | value |
|---|---|
| setSize | 5 |
| pMANOVA | 0.38 |
| p.adjustMANOVA | 0.483 |
| s.dist | 0.648 |
| s.del3 | -0.133 |
| s.del5 | -0.419 |
| s.der3 | -0.322 |
| s.der5 | -0.349 |
| p.del3 | 0.606 |
| p.del5 | 0.105 |
| p.der3 | 0.212 |
| p.der5 | 0.176 |
Warning in xtfrm.data.frame(x): cannot xtfrm data frames
| Gene | del5 | der5 |
|---|---|---|
| AT4G23920 | -8867 | -9090 |
| AT4G10960 | -4192 | -8665 |
| AT1G12780 | -1461 | -8745 |
Click HERE to show all gene set members
| del3 | del5 | der3 | der5 | |
|---|---|---|---|---|
| AT1G63180 | -4591 | -6068 | 4049 | 1255 |
| AT4G23920 | -2452 | -8867 | -10168 | -9090 |
| AT4G10960 | -1640 | -4192 | -9463 | -8665 |
| AT1G64440 | 995 | -361 | 5570 | 9306 |
| AT1G12780 | 829 | -1461 | -9592 | -8745 |
cell.wall.cell.wall.proteins.LRR
| metric | value |
|---|---|
| setSize | 17 |
| pMANOVA | 0.0254 |
| p.adjustMANOVA | 0.0686 |
| s.dist | 0.644 |
| s.del3 | 0.229 |
| s.del5 | 0.29 |
| s.der3 | 0.384 |
| s.der5 | 0.363 |
| p.del3 | 0.103 |
| p.del5 | 0.0386 |
| p.der3 | 0.0061 |
| p.der5 | 0.00965 |
Warning in xtfrm.data.frame(x): cannot xtfrm data frames
| Gene | der3 | der5 |
|---|---|---|
| AT1G62440 | 6841 | 9486 |
| AT3G24480 | 5780 | 9836 |
| AT1G26250 | 7586 | 5709 |
| AT4G13340 | 7337 | 5541 |
| AT2G46630 | 4510 | 7352 |
| AT1G12040 | 6406 | 5062 |
| AT3G19020 | 3447 | 7982 |
| AT2G19780 | 7595 | 2677 |
| AT4G28380 | 4732 | 4194 |
| AT3G22800 | 8765 | 1947 |
| AT4G06744 | 2067 | 88 |
Click HERE to show all gene set members
| del3 | del5 | der3 | der5 | |
|---|---|---|---|---|
| AT4G13340 | 9637 | -225 | 7337 | 5541 |
| AT2G19780 | 9611 | 9522 | 7595 | 2677 |
| AT3G24480 | 9433 | 8467 | 5780 | 9836 |
| AT4G33970 | -8333 | -9231 | -9024 | -5304 |
| AT2G15880 | 7794 | 2191 | -1158 | 1068 |
| AT4G06744 | -6654 | -1809 | 2067 | 88 |
| AT1G62440 | 6775 | 1346 | 6841 | 9486 |
| AT2G46630 | 6734 | 9600 | 4510 | 7352 |
| AT4G28380 | 6594 | 4904 | 4732 | 4194 |
| AT1G26250 | -3658 | -4232 | 7586 | 5709 |
| AT4G29240 | 2336 | 9612 | 1550 | -4059 |
| AT3G22800 | -1270 | 770 | 8765 | 1947 |
| AT3G19020 | -1221 | 3941 | 3447 | 7982 |
| AT1G12040 | -1102 | 3550 | 6406 | 5062 |
| AT1G49490 | -978 | 2026 | -1461 | -2245 |
| AT4G18670 | 730 | 488 | -1999 | 7968 |
| AT2G42800 | 557 | 6018 | -1916 | 7176 |
protein.synthesis.ribosome.biogenesis.export.from.nucleus
| metric | value |
|---|---|
| setSize | 7 |
| pMANOVA | 0.0123 |
| p.adjustMANOVA | 0.0416 |
| s.dist | 0.644 |
| s.del3 | -0.402 |
| s.del5 | -0.328 |
| s.der3 | -0.25 |
| s.der5 | 0.289 |
| p.del3 | 0.0655 |
| p.del5 | 0.133 |
| p.der3 | 0.252 |
| p.der5 | 0.186 |
Warning in xtfrm.data.frame(x): cannot xtfrm data frames
| Gene | del3 | del5 |
|---|---|---|
| AT1G50920 | -8960 | -7061 |
| AT5G60790 | -5122 | -5369 |
| AT3G01610 | -5512 | -3484 |
| AT1G43860 | -6712 | -2617 |
| AT3G51270 | -2235 | -6962 |
| AT3G07050 | -7826 | -948 |
Click HERE to show all gene set members
| del3 | del5 | der3 | der5 | |
|---|---|---|---|---|
| AT1G50920 | -8960 | -7061 | -6805 | 6057 |
| AT2G27200 | 8325 | 3352 | 4325 | -3852 |
| AT3G07050 | -7826 | -948 | -4460 | 7916 |
| AT1G43860 | -6712 | -2617 | -108 | 5504 |
| AT3G01610 | -5512 | -3484 | -6646 | 3415 |
| AT5G60790 | -5122 | -5369 | -3345 | -2639 |
| AT3G51270 | -2235 | -6962 | -5455 | 5094 |
hormone.metabolism.ethylene.signal.transduction
| metric | value |
|---|---|
| setSize | 13 |
| pMANOVA | 6.98e-06 |
| p.adjustMANOVA | 8.17e-05 |
| s.dist | 0.641 |
| s.del3 | 0.0188 |
| s.del5 | -0.317 |
| s.der3 | 0.336 |
| s.der5 | -0.444 |
| p.del3 | 0.907 |
| p.del5 | 0.048 |
| p.der3 | 0.0362 |
| p.der5 | 0.00552 |
Warning in xtfrm.data.frame(x): cannot xtfrm data frames
| Gene | der5 | der3 |
|---|---|---|
| AT4G17500 | -7119 | 6440 |
| AT4G17490 | -4272 | 7499 |
| AT5G47230 | -6087 | 3703 |
| AT5G07580 | -8311 | 2190 |
| AT5G51190 | -2152 | 5673 |
| AT5G61600 | -1317 | 7622 |
| AT4G37580 | -1379 | 4168 |
| AT5G25190 | -1074 | 1883 |
Click HERE to show all gene set members
| del3 | del5 | der3 | der5 | |
|---|---|---|---|---|
| AT5G44210 | -9839 | -7060 | -2104 | -1310 |
| AT5G47220 | -9198 | -7491 | -5252 | -8361 |
| AT5G25190 | 8907 | -3150 | 1883 | -1074 |
| AT5G07580 | 8175 | 3534 | 2190 | -8311 |
| AT5G61590 | 7832 | 49 | 7532 | 675 |
| AT5G61600 | 7826 | 2315 | 7622 | -1317 |
| AT4G17500 | -7133 | -7209 | 6440 | -7119 |
| AT4G34410 | -5205 | -7778 | -421 | -6856 |
| AT4G17490 | 4492 | -3993 | 7499 | -4272 |
| AT4G37580 | -2522 | -197 | 4168 | -1379 |
| AT4G31980 | -926 | -3448 | -6071 | -5964 |
| AT5G47230 | -504 | -703 | 3703 | -6087 |
| AT5G51190 | -349 | -6257 | 5673 | -2152 |
protein.synthesis.ribosomal.protein.eukaryotic.60S.subunit.L7A
| metric | value |
|---|---|
| setSize | 5 |
| pMANOVA | 0.0442 |
| p.adjustMANOVA | 0.101 |
| s.dist | 0.641 |
| s.del3 | -0.507 |
| s.del5 | 0.215 |
| s.der3 | -0.327 |
| s.der5 | -0.00217 |
| p.del3 | 0.0498 |
| p.del5 | 0.404 |
| p.der3 | 0.205 |
| p.der5 | 0.993 |
Warning in xtfrm.data.frame(x): cannot xtfrm data frames
| Gene | del3 | der3 |
|---|---|---|
| AT3G62870 | -7438 | -4638 |
| AT4G12600 | -8152 | -3608 |
| AT2G47610 | -4416 | -5596 |
| AT5G20160 | -8659 | -2632 |
Click HERE to show all gene set members
| del3 | del5 | der3 | der5 | |
|---|---|---|---|---|
| AT5G20160 | -8659 | 7912 | -2632 | 605 |
| AT4G12600 | -8152 | 7299 | -3608 | -3373 |
| AT3G62870 | -7438 | 1366 | -4638 | 2446 |
| AT2G47610 | -4416 | -2024 | -5596 | -464 |
| AT4G01790 | 3502 | -4391 | -3391 | 1877 |
cell.wall.cellulose.synthesis.cellulose.synthase
| metric | value |
|---|---|
| setSize | 21 |
| pMANOVA | 0.00605 |
| p.adjustMANOVA | 0.0246 |
| s.dist | 0.633 |
| s.del3 | 0.343 |
| s.del5 | 0.379 |
| s.der3 | 0.323 |
| s.der5 | 0.186 |
| p.del3 | 0.00647 |
| p.del5 | 0.00263 |
| p.der3 | 0.0103 |
| p.der5 | 0.14 |
Warning in xtfrm.data.frame(x): cannot xtfrm data frames
| Gene | del5 | del3 |
|---|---|---|
| AT4G32410 | 9478 | 9409 |
| AT5G05170 | 9467 | 8919 |
| AT4G39350 | 9229 | 8689 |
| AT1G23480 | 5564 | 9418 |
| AT2G21770 | 6879 | 7564 |
| AT5G64740 | 7566 | 5964 |
| AT4G15290 | 5450 | 4657 |
| AT4G18780 | 4172 | 5023 |
| AT5G17420 | 6058 | 3385 |
| AT1G55850 | 9293 | 1750 |
| AT5G09870 | 6818 | 1521 |
| AT5G44030 | 3346 | 3094 |
| AT2G35650 | 986 | 1368 |
Click HERE to show all gene set members
| del3 | del5 | der3 | der5 | |
|---|---|---|---|---|
| AT1G23480 | 9418 | 5564 | 7717 | 8980 |
| AT4G32410 | 9409 | 9478 | 7982 | 10008 |
| AT5G05170 | 8919 | 9467 | 8441 | 9908 |
| AT4G39350 | 8689 | 9229 | 7689 | 9728 |
| AT2G21770 | 7564 | 6879 | 4293 | 3012 |
| AT4G24000 | 7292 | -62 | -8811 | -9101 |
| AT4G23990 | -6245 | -4980 | -9781 | -9254 |
| AT5G64740 | 5964 | 7566 | 8076 | 9701 |
| AT4G24010 | -5475 | 4771 | -10298 | 139 |
| AT2G32610 | 5777 | -4650 | 5348 | -300 |
| AT4G18780 | 5023 | 4172 | 5498 | -1988 |
| AT4G15290 | 4657 | 5450 | 6985 | 6335 |
| AT5G17420 | 3385 | 6058 | 5249 | -2632 |
| AT5G44030 | 3094 | 3346 | 5147 | -41 |
| AT5G16910 | -1956 | -5130 | 2767 | -5752 |
| AT1G55850 | 1750 | 9293 | -8871 | -7958 |
| AT5G09870 | 1521 | 6818 | 7942 | 9158 |
| AT2G35650 | 1368 | 986 | 5413 | 3145 |
| AT1G02730 | -1198 | 7823 | 3243 | 8715 |
| AT2G32540 | 345 | -1285 | -9388 | -4333 |
| AT3G03050 | -23 | -4458 | 5884 | 5809 |
Here is the session info with all the versions of packages used.
sessionInfo()## R version 4.1.0 (2021-05-18)
## Platform: x86_64-pc-linux-gnu (64-bit)
## Running under: Ubuntu 20.04.2 LTS
##
## Matrix products: default
## BLAS: /usr/lib/x86_64-linux-gnu/blas/libblas.so.3.9.0
## LAPACK: /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3.9.0
##
## locale:
## [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
## [3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8
## [5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8
## [7] LC_PAPER=en_US.UTF-8 LC_NAME=C
## [9] LC_ADDRESS=C LC_TELEPHONE=C
## [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
##
## attached base packages:
## [1] parallel stats4 stats graphics grDevices utils datasets
## [8] methods base
##
## other attached packages:
## [1] pkgload_1.2.1 GGally_2.1.2
## [3] beeswarm_0.4.0 gtools_3.9.2
## [5] tibble_3.1.3 dplyr_1.0.7
## [7] echarts4r_0.4.1 ggplot2_3.3.5
## [9] vioplot_0.3.6 zoo_1.8-9
## [11] sm_2.2-5.6 UpSetR_1.4.0
## [13] eulerr_6.1.0 kableExtra_1.3.4
## [15] mitch_1.4.0 DESeq2_1.32.0
## [17] SummarizedExperiment_1.22.0 Biobase_2.52.0
## [19] MatrixGenerics_1.4.0 matrixStats_0.59.0
## [21] GenomicRanges_1.44.0 GenomeInfoDb_1.28.1
## [23] IRanges_2.26.0 S4Vectors_0.30.0
## [25] BiocGenerics_0.38.0 gplots_3.1.1
## [27] reshape2_1.4.4
##
## loaded via a namespace (and not attached):
## [1] colorspace_2.0-2 ellipsis_0.3.2 rprojroot_2.0.2
## [4] XVector_0.32.0 rstudioapi_0.13 farver_2.1.0
## [7] bit64_4.0.5 AnnotationDbi_1.54.1 fansi_0.5.0
## [10] xml2_1.3.2 splines_4.1.0 cachem_1.0.5
## [13] geneplotter_1.70.0 knitr_1.33 polyclip_1.10-0
## [16] jsonlite_1.7.2 annotate_1.70.0 png_0.1-7
## [19] shiny_1.6.0 compiler_4.1.0 httr_1.4.2
## [22] assertthat_0.2.1 Matrix_1.3-4 fastmap_1.1.0
## [25] later_1.2.0 prettyunits_1.1.1 htmltools_0.5.1.1
## [28] tools_4.1.0 gtable_0.3.0 glue_1.4.2
## [31] GenomeInfoDbData_1.2.6 Rcpp_1.0.7 jquerylib_0.1.4
## [34] vctrs_0.3.8 Biostrings_2.60.1 svglite_2.0.0
## [37] polylabelr_0.2.0 xfun_0.24 stringr_1.4.0
## [40] rvest_1.0.0 mime_0.11 lifecycle_1.0.0
## [43] XML_3.99-0.6 zlibbioc_1.38.0 MASS_7.3-54
## [46] scales_1.1.1 hms_1.1.0 promises_1.2.0.1
## [49] RColorBrewer_1.1-2 yaml_2.2.1 memoise_2.0.0
## [52] gridExtra_2.3 sass_0.4.0 reshape_0.8.8
## [55] stringi_1.7.3 RSQLite_2.2.7 highr_0.9
## [58] genefilter_1.74.0 desc_1.3.0 caTools_1.18.2
## [61] BiocParallel_1.26.1 rlang_0.4.11 pkgconfig_2.0.3
## [64] systemfonts_1.0.2 bitops_1.0-7 evaluate_0.14
## [67] lattice_0.20-44 purrr_0.3.4 labeling_0.4.2
## [70] htmlwidgets_1.5.3 bit_4.0.4 tidyselect_1.1.1
## [73] plyr_1.8.6 magrittr_2.0.1 R6_2.5.0
## [76] generics_0.1.0 DelayedArray_0.18.0 DBI_1.1.1
## [79] pillar_1.6.1 withr_2.4.2 survival_3.2-11
## [82] KEGGREST_1.32.0 RCurl_1.98-1.3 crayon_1.4.1
## [85] KernSmooth_2.23-20 utf8_1.2.2 rmarkdown_2.9
## [88] progress_1.2.2 locfit_1.5-9.4 grid_4.1.0
## [91] blob_1.2.2 digest_0.6.27 webshot_0.5.2
## [94] xtable_1.8-4 httpuv_1.6.1 munsell_0.5.0
## [97] viridisLite_0.4.0 bslib_0.2.5.1 tcltk_4.1.0END of report